AlfalfaGEDB | MsG0180000600.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000600.01

KEGG: K00145
GO: GO:0003942 GO:0005737 GO:0006526 GO:0008652 GO:0016620 GO:0046983 GO:0051287 GO:0055114
PFAM: PF01118 PF02774

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000600.01.T01	XP_003588768.1	88.354	395	16	3	29	423	21	385	0	694

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000600.01.T01	Q93Z70	67.2	375	94	2	49	423	56	401	0	528

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000600.01.T01	G7I708	88.354	395	16	3	29	423	21	385	0.0	694

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000600.01	MsG0180003499.01	0.805949	1.042594e-49	5.588843e-47
MsG0180000600.01	MsG0280009902.01	0.810810	9.578060e-51	5.831159e-48
MsG0180000600.01	MsG0580024317.01	0.813996	1.929048e-51	1.278910e-48
MsG0180000600.01	MsG0580024426.01	0.817877	2.624718e-52	1.934634e-49
MsG0180000600.01	MsG0580029969.01	0.823105	1.656279e-53	1.412858e-50
MsG0180000600.01	MsG0780041487.01	0.805193	1.501987e-49	7.896453e-47
MsG0180000600.01	MsG0880045483.01	0.803647	3.155077e-49	1.594005e-46

Showing 1 to 7 of 7 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000600.01.T01	MTR_1g012540	88.354	395	16	3	29	423	21	385	0.0	694

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000600.01.T01	AT2G19940	62.954	413	121	3	14	423	6	389	0.0	530
MsG0180000600.01.T01	AT2G19940	62.954	413	121	3	14	423	6	389	0.0	530

Showing 1 to 2 of 2 entries

Previous1Next

Find 102 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAGTTGATTGCATACCA+CGG	0.717797	1:+8477527	None:intergenic
AAATCTGGTGTTAGTGGAGC+AGG	0.476022	1:-8478362	MsG0180000600.01.T01:intron
AACCCTATGGAAACAGAGGC+AGG	0.559077	1:+8476858	None:intergenic
AACGATGAAGGAGAATGGGG+GGG	0.632544	1:-8483141	MsG0180000600.01.T01:intron
AACTAAACTTACCATGGCGA+TGG	0.602389	1:+8478168	None:intergenic
AAGAACGATGAAGGAGAATG+GGG	0.591311	1:-8483144	MsG0180000600.01.T01:CDS
AAGAGCAATCATTATATCTG+TGG	0.621026	1:-8477057	MsG0180000600.01.T01:CDS
AAGTCATCAATTCTTACTCC+TGG	0.515745	1:+8477490	None:intergenic
AAGTGGCTATACTGGCTCTG+AGG	0.691116	1:-8481436	MsG0180000600.01.T01:intron
AATGGGATTTCCAGAAAATT+TGG	0.156054	1:-8476891	MsG0180000600.01.T01:CDS

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGTTCTGATGACATTG+TGG	-	Chr1:8478710-8478729	MsG0180000600.01.T01:intron	30.0%
AAACTATTCCGGAGAATTTA+TGG	-	Chr1:8479922-8479941	MsG0180000600.01.T01:intron	30.0%
AAATAGTTGATTGCATACCA+CGG	+	Chr1:8482539-8482558	None:intergenic	30.0%
AACGAAGAAGTCAATTCAAA+TGG	-	Chr1:8480171-8480190	MsG0180000600.01.T01:intron	30.0%
AACTAATTCATGTTCTCTGT+TGG	+	Chr1:8479310-8479329	None:intergenic	30.0%
AACTTCTTATCTTGTGTTGT+TGG	-	Chr1:8478503-8478522	MsG0180000600.01.T01:intron	30.0%
AAGAGCAATCATTATATCTG+TGG	-	Chr1:8483006-8483025	MsG0180000600.01.T01:intron	30.0%
AATCACTACTAATCACTAAG+TGG	-	Chr1:8481973-8481992	MsG0180000600.01.T01:intron	30.0%
AATCTTGCTTCATATCAGAA+TGG	-	Chr1:8479539-8479558	MsG0180000600.01.T01:intron	30.0%
AATGAGTAGTTTAGAAAGCT+AGG	+	Chr1:8480402-8480421	None:intergenic	30.0%

Showing 1 to 10 of 345 entries

Previous1 2 3 4 5…35Next

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	8476862	8483223	8476862	ID=MsG0180000600.01;Name=MsG0180000600.01
Chr1	mRNA	8476862	8483223	8476862	ID=MsG0180000600.01.T01;Parent=MsG0180000600.01;Name=MsG0180000600.01.T01;_AED=0.49;_eAED=0.53;_QI=0\|0.90\|0.83\|1\|1\|1\|12\|0\|423
Chr1	exon	8483142	8483223	8483142	ID=MsG0180000600.01.T01:exon:2421;Parent=MsG0180000600.01.T01
Chr1	exon	8481437	8481552	8481437	ID=MsG0180000600.01.T01:exon:2422;Parent=MsG0180000600.01.T01
Chr1	exon	8481037	8481144	8481037	ID=MsG0180000600.01.T01:exon:2423;Parent=MsG0180000600.01.T01
Chr1	exon	8480822	8480908	8480822	ID=MsG0180000600.01.T01:exon:2424;Parent=MsG0180000600.01.T01
Chr1	exon	8480611	8480661	8480611	ID=MsG0180000600.01.T01:exon:2425;Parent=MsG0180000600.01.T01
Chr1	exon	8480434	8480505	8480434	ID=MsG0180000600.01.T01:exon:2426;Parent=MsG0180000600.01.T01
Chr1	exon	8479700	8479819	8479700	ID=MsG0180000600.01.T01:exon:2427;Parent=MsG0180000600.01.T01
Chr1	exon	8478363	8478423	8478363	ID=MsG0180000600.01.T01:exon:2428;Parent=MsG0180000600.01.T01
Chr1	exon	8478180	8478260	8478180	ID=MsG0180000600.01.T01:exon:2429;Parent=MsG0180000600.01.T01
Chr1	exon	8477639	8477718	8477639	ID=MsG0180000600.01.T01:exon:2430;Parent=MsG0180000600.01.T01
Chr1	exon	8477462	8477551	8477462	ID=MsG0180000600.01.T01:exon:2431;Parent=MsG0180000600.01.T01
Chr1	exon	8476862	8477185	8476862	ID=MsG0180000600.01.T01:exon:2432;Parent=MsG0180000600.01.T01
Chr1	CDS	8483142	8483223	8483142	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8481437	8481552	8481437	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8481037	8481144	8481037	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8480822	8480908	8480822	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8480611	8480661	8480611	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8480434	8480505	8480434	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8479700	8479819	8479700	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8478363	8478423	8478363	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8478180	8478260	8478180	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8477639	8477718	8477639	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8477462	8477551	8477462	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1	CDS	8476862	8477185	8476862	ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01

Gene Sequence

>MsG0180000600.01.T01

ATGAAAAGGTGGAAATTGAACAACATTGATACTGAAGAGAAGAAAGAGATCTGCGTGAAGAACGATGAAGGAGAATGGGGGGGATTGATAAAGCAACAGAATGTGAAGAAGTTGTCGCCTATTAAGTGTTCGATCAAAAGTTCACAAAACAATGTTCGTGTTGGTGTTCTTGGAGCAAGTGGCTATACTGGCTCTGAGATTCTTCGGCTTTTGGCAAATCATCCACAATTTGGGGTTGCATTGATGACCGCTGATAGGAAAGCTGGACAGGCAATCTCATCTGTATTCCCTCATTTGGGCACACAAGACTTGCCAGATTTGATTGCAATAAAGGATGCAGATTTTTCTGATGTGGATGCTGTATTCTGTTGTTTACCACATGGAACTACGCAGGAAATAATTAAAGGCCTTCCAAAGCACTTGAAGATTGTTGATCTTTCAGCAGATTTTCGTCTAAGAGATGTTTCTGAGTATGAAGAGTGGTATGGTCAGCCACACAGGGCACCAGGTTTGCAGAAAGAAGCTATATATGGATTAACAGAGGTTTTGAGGGAGGAAATAAAGAATGCGCGCCTAGTTGCTAATCCTGGTTGCTATCCAACTTCCATTCAACTTCCTCTTGTTCCACTAATAAAGGCTAATCTTATTCGGACTACTAATATTATTGTTGATGCTAAATCTGGTGTTAGTGGAGCAGGGCGAAGTGCGAAAGAAAATTTATTGTTCACTGAAGTGACCGAGGGTATGAATTCTTACGGTGTTACTCGCCATCGCCATGCTCCAGAAATCGAGCAGGGACTTGCTGATGCTGCAGGTTCAAAAGTAACCATTAGTTTTACTCCACACCTGATTCCAATGAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTAAGAATTGATGACTTGCGCCATCAACTGCAACTATCATATGAGGATGAAGAATTTGTTGTCCTGTTGGAAAACGGAGTCATTCCTCGAACTCATAGTGTGAAAGGATCAAATTACTGTTTATTCAATGTTTTCCTGACCGAATTCCTGGAAGAGCAATCATTATATCTGTGGTATGTTATAGGTGAAATATTTGGATTACTTAATTATACTATATATATTATTGCAAAGGCTCTAAGTATTGTTGATATGTTGTTGCAGATTGATAATTTAGTGAAGGGAGCTTCAGGTCAAGCCTTACAAAACCTTAATTTGATAATGGGATTTCCAGAAAATTTGGGCCTTCAATACCTGCCTCTGTTTCCATAG

Protein sequence

>MsG0180000600.01.T01

MKRWKLNNIDTEEKKEICVKNDEGEWGGLIKQQNVKKLSPIKCSIKSSQNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTADRKAGQAISSVFPHLGTQDLPDLIAIKDADFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSADFRLRDVSEYEEWYGQPHRAPGLQKEAIYGLTEVLREEIKNARLVANPGCYPTSIQLPLVPLIKANLIRTTNIIVDAKSGVSGAGRSAKENLLFTEVTEGMNSYGVTRHRHAPEIEQGLADAAGSKVTISFTPHLIPMSRGMQSTIYVEMAPGVRIDDLRHQLQLSYEDEEFVVLLENGVIPRTHSVKGSNYCLFNVFLTEFLEEQSLYLWYVIGEIFGLLNYTIYIIAKALSIVDMLLQIDNLVKGASGQALQNLNLIMGFPENLGLQYLPLFP*