AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000600.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000600.01.T01 MTR_1g012540 88.354 395 16 3 29 423 21 385 0.0 694
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000600.01.T01 AT2G19940 62.954 413 121 3 14 423 6 389 0.0 530
MsG0180000600.01.T01 AT2G19940 62.954 413 121 3 14 423 6 389 0.0 530

Find 102 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCAAATCATCCACAATT+TGG 0.154402 1:-8481110 MsG0180000600.01.T01:CDS
GCAAGTCCCTGCTCGATTTC+TGG 0.155827 1:+8477694 None:intergenic
AATGGGATTTCCAGAAAATT+TGG 0.156054 1:-8476891 MsG0180000600.01.T01:CDS
GCCAGATTTGATTGCAATAA+AGG 0.198962 1:-8480881 MsG0180000600.01.T01:CDS
GAAATCCCATTATCAAATTA+AGG 0.202057 1:+8476903 None:intergenic
ACAAAACCTTAATTTGATAA+TGG 0.221789 1:-8476909 MsG0180000600.01.T01:CDS
TTCATCCAGGAAATAATTAA+AGG 0.224567 1:-8480648 MsG0180000600.01.T01:intron
TCCTCTTGTTCCACTAATAA+AGG 0.241320 1:-8479699 MsG0180000600.01.T01:intron
CTCATCTGTATTCCCTCATT+TGG 0.258043 1:-8481045 MsG0180000600.01.T01:CDS
TTATTAGATTCTTCGGCTTT+TGG 0.259347 1:-8481129 MsG0180000600.01.T01:intron
TGGCAAATCATCCACAATTT+GGG 0.286120 1:-8481109 MsG0180000600.01.T01:CDS
CAAAACCTTAATTTGATAAT+GGG 0.287240 1:-8476908 MsG0180000600.01.T01:CDS
AATGTTCGTGTTGGTGTTCT+TGG 0.291728 1:-8481462 MsG0180000600.01.T01:CDS
GATATAATGATTGCTCTTCC+AGG 0.320850 1:+8477062 None:intergenic
TTATATCTGTGGTATGTTAT+AGG 0.322210 1:-8477046 MsG0180000600.01.T01:CDS
TCCTTTATTGCAATCAAATC+TGG 0.330544 1:+8480880 None:intergenic
AATTTAGTGAAGGGAGCTTC+AGG 0.348254 1:-8476941 MsG0180000600.01.T01:CDS
TCAACAATCTTCAAGTGCTT+TGG 0.351359 1:+8480621 None:intergenic
TTGTGCAGGCTAATCTTATT+CGG 0.351439 1:-8478409 MsG0180000600.01.T01:intron
CTTGGAGCAAGTGGCTATAC+TGG 0.355381 1:-8481444 MsG0180000600.01.T01:CDS
ATGGGATTTCCAGAAAATTT+GGG 0.367328 1:-8476890 MsG0180000600.01.T01:CDS
ATCAACTATTTATGTGGAAA+TGG 0.368444 1:-8477515 MsG0180000600.01.T01:CDS
TATGTTATAGGTGAAATATT+TGG 0.372987 1:-8477034 MsG0180000600.01.T01:CDS
ACACAGGGCACCAGGTTTGC+AGG 0.381768 1:-8480433 MsG0180000600.01.T01:intron
ATACAGAAAGAAGCTATATA+TGG 0.393240 1:-8479803 MsG0180000600.01.T01:intron
TGATTGCTCTTCCAGGAATT+CGG 0.397058 1:+8477069 None:intergenic
ATTATTGTTGATGCTAAATC+TGG 0.402980 1:-8478377 MsG0180000600.01.T01:CDS
ATACCTGCCTCTGTTTCCAT+AGG 0.406110 1:-8476861 None:intergenic
TCATCTGTATTCCCTCATTT+GGG 0.409424 1:-8481044 MsG0180000600.01.T01:CDS
CATATGATAGTTGCAGTTGA+TGG 0.416038 1:+8477464 None:intergenic
CCACTCTTACCATTGGAATC+AGG 0.428735 1:+8477629 None:intergenic
CGCTGATAGGAAAGCTGGAC+AGG 0.430343 1:-8481072 MsG0180000600.01.T01:CDS
GAAGAACGATGAAGGAGAAT+GGG 0.436860 1:-8483145 MsG0180000600.01.T01:CDS
TTGCATTGATGACCGCTGAT+AGG 0.449515 1:-8481085 MsG0180000600.01.T01:CDS
AGAGGAAGTTGAATGGAAGT+TGG 0.455999 1:+8479716 None:intergenic
AGTATGCTAACCTTTATTAG+TGG 0.459300 1:+8479689 None:intergenic
TGAAGAACGATGAAGGAGAA+TGG 0.460232 1:-8483146 MsG0180000600.01.T01:CDS
ATAAGTCCCACCTGCAAACC+TGG 0.464182 1:+8480423 None:intergenic
CATACTTGTGTGCCCAAATG+AGG 0.473907 1:+8481032 None:intergenic
CAGGGACTTGCTGATGCTGC+AGG 0.475105 1:-8477682 MsG0180000600.01.T01:CDS
CCTTTCACACTATGAGTTCG+AGG 0.475900 1:+8477124 None:intergenic
AAATCTGGTGTTAGTGGAGC+AGG 0.476022 1:-8478362 MsG0180000600.01.T01:intron
TTTGTTGTCCTGTTGGAAAA+CGG 0.476957 1:-8477154 MsG0180000600.01.T01:CDS
GAAACAGAGGCAGGTATTGA+AGG 0.488582 1:+8476867 None:intergenic
TATGCAATCAACTATTTATG+TGG 0.500833 1:-8477521 MsG0180000600.01.T01:CDS
GATGCTAAATCTGGTGTTAG+TGG 0.506428 1:-8478368 MsG0180000600.01.T01:CDS
ATTTATGTGGAAATGGCTCC+AGG 0.507293 1:-8477508 MsG0180000600.01.T01:CDS
TCAACTGCAACTATCATATG+AGG 0.508393 1:-8477461 MsG0180000600.01.T01:intron
CAGATTGATAATTTAGTGAA+GGG 0.510753 1:-8476950 MsG0180000600.01.T01:CDS
TGAAGAATTTGTTGTCCTGT+TGG 0.513433 1:-8477161 MsG0180000600.01.T01:CDS
AAGTCATCAATTCTTACTCC+TGG 0.515745 1:+8477490 None:intergenic
ATAGTCAAAATGGCATGAAA+AGG 0.517009 1:-8483215 None:intergenic
CAGGTGTGGAGTAAAACTAA+TGG 0.519024 1:+8477648 None:intergenic
GCTCTTCCAGGAATTCGGTC+AGG 0.521663 1:+8477074 None:intergenic
ATGACCGCTGATAGGAAAGC+TGG 0.524119 1:-8481077 MsG0180000600.01.T01:CDS
ACCGAGGGTATGAATTCTTA+CGG 0.524334 1:-8478200 MsG0180000600.01.T01:CDS
TACTATATATATTATTGCAA+AGG 0.524907 1:-8476999 MsG0180000600.01.T01:CDS
GCGCGCCTAGTTGCTAATCC+TGG 0.525806 1:-8479746 MsG0180000600.01.T01:CDS
CACAGCTCCAGAAATCGAGC+AGG 0.526658 1:-8477701 MsG0180000600.01.T01:intron
TGGAACAAGAGGAAGTTGAA+TGG 0.526923 1:+8479709 None:intergenic
GCAGATTGATAATTTAGTGA+AGG 0.528521 1:-8476951 MsG0180000600.01.T01:CDS
CCTCGAACTCATAGTGTGAA+AGG 0.536835 1:-8477124 MsG0180000600.01.T01:CDS
ATCTGCGTGAAGAACGATGA+AGG 0.542722 1:-8483153 MsG0180000600.01.T01:CDS
GGTCAGCCACACAGGGCACC+AGG 0.548734 1:-8480441 MsG0180000600.01.T01:CDS
AGTGGTATGGTCAGCCACAC+AGG 0.549332 1:-8480449 MsG0180000600.01.T01:CDS
ATCAATGCAACCCCAAATTG+TGG 0.551428 1:+8481098 None:intergenic
GTCAAAATGGCATGAAAAGG+TGG 0.551887 1:-8483212 None:intergenic
AACCCTATGGAAACAGAGGC+AGG 0.559077 1:+8476858 None:intergenic
ACCTTTATTAGTGGAACAAG+AGG 0.561262 1:+8479698 None:intergenic
TACTCCACACCTGATTCCAA+TGG 0.570570 1:-8477638 MsG0180000600.01.T01:intron
GAACGATGAAGGAGAATGGG+GGG 0.573020 1:-8483142 MsG0180000600.01.T01:CDS
TACCTGCCTCTGTTTCCATA+GGG 0.575309 1:-8476860 None:intergenic
AGAACGATGAAGGAGAATGG+GGG 0.575355 1:-8483143 MsG0180000600.01.T01:CDS
CAATCTTCAAGTGCTTTGGA+AGG 0.575725 1:+8480625 None:intergenic
AGCAACCAGGATTAGCAACT+AGG 0.580076 1:+8479741 None:intergenic
TCACAAAACAATGTTCGTGT+TGG 0.582896 1:-8481471 MsG0180000600.01.T01:CDS
TGCAAACCTGGTGCCCTGTG+TGG 0.584197 1:+8480435 None:intergenic
ATGGAAGTTGGATAGCAACC+AGG 0.586547 1:+8479728 None:intergenic
AAGAACGATGAAGGAGAATG+GGG 0.591311 1:-8483144 MsG0180000600.01.T01:CDS
GGTGTTACTCGCCATCGCCA+TGG 0.592901 1:-8478179 MsG0180000600.01.T01:intron
ATACTTGTGTGCCCAAATGA+GGG 0.594202 1:+8481033 None:intergenic
GGCAAATCATCCACAATTTG+GGG 0.598401 1:-8481108 MsG0180000600.01.T01:CDS
ACCGTAAGAATTCATACCCT+CGG 0.601925 1:+8478199 None:intergenic
AACTAAACTTACCATGGCGA+TGG 0.602389 1:+8478168 None:intergenic
ATCTAACCCTATGGAAACAG+AGG 0.604686 1:+8476854 None:intergenic
CTGTCCAGCTTTCCTATCAG+CGG 0.609674 1:+8481073 None:intergenic
GTTGGTGTTCTTGGAGCAAG+TGG 0.615469 1:-8481453 MsG0180000600.01.T01:CDS
AAGAGCAATCATTATATCTG+TGG 0.621026 1:-8477057 MsG0180000600.01.T01:CDS
ATGTTTCTGAGTATGAAGAG+TGG 0.629886 1:-8480467 MsG0180000600.01.T01:CDS
ATTGTTCACTGAAGTGACCG+AGG 0.630123 1:-8478216 MsG0180000600.01.T01:CDS
AACGATGAAGGAGAATGGGG+GGG 0.632544 1:-8483141 MsG0180000600.01.T01:intron
CTTACCATTGGAATCAGGTG+TGG 0.639704 1:+8477634 None:intergenic
TCTGAGTATGAAGAGTGGTA+TGG 0.641976 1:-8480462 MsG0180000600.01.T01:CDS
TTGTTCACTGAAGTGACCGA+GGG 0.642694 1:-8478215 MsG0180000600.01.T01:CDS
GTATTCTGTTGTTTACCACA+TGG 0.650776 1:-8480832 MsG0180000600.01.T01:CDS
TTTACCACATGGAACTACGC+AGG 0.659872 1:-8480821 MsG0180000600.01.T01:intron
GTGGTATGGTCAGCCACACA+GGG 0.666810 1:-8480448 MsG0180000600.01.T01:CDS
AGCTATATATGGATTAACAG+AGG 0.682127 1:-8479792 MsG0180000600.01.T01:CDS
ACAGCTCCAGAAATCGAGCA+GGG 0.687580 1:-8477700 MsG0180000600.01.T01:intron
AAGTGGCTATACTGGCTCTG+AGG 0.691116 1:-8481436 MsG0180000600.01.T01:intron
AAATAGTTGATTGCATACCA+CGG 0.717797 1:+8477527 None:intergenic
TGAACCTGCGTAGTTCCATG+TGG 0.740745 1:+8480817 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTA+TGG - Chr1:8479103-8479122 MsG0180000600.01.T01:intron 0.0%
!! AAAATATTAGAGTTTAATTA+TGG - Chr1:8477250-8477269 MsG0180000600.01.T01:intron 10.0%
!! AGAAAAGAAAAAAATATATT+AGG + Chr1:8481046-8481065 None:intergenic 10.0%
!! TTAATAGAATGAAATTAAAA+TGG + Chr1:8478484-8478503 None:intergenic 10.0%
!!! AATTAATGATTTTATTTATG+TGG + Chr1:8477343-8477362 None:intergenic 10.0%
!!! ATAAAAATCATTTTCAAAAT+AGG + Chr1:8481571-8481590 None:intergenic 10.0%
!!! ATTAATGATTTTATTTATGT+GGG + Chr1:8477342-8477361 None:intergenic 10.0%
!!! CTCTAATATTTTTTTTTTTT+AGG + Chr1:8477242-8477261 None:intergenic 10.0%
!! ACTATAAAGAAAGAAAAAAA+AGG - Chr1:8477536-8477555 MsG0180000600.01.T01:intron 15.0%
!! ATATAATAACTAAACCAAAA+AGG + Chr1:8477177-8477196 None:intergenic 15.0%
!! TAAATATATGAGTTTAATTG+TGG + Chr1:8477430-8477449 None:intergenic 15.0%
!! TACTATATATATTATTGCAA+AGG - Chr1:8483064-8483083 MsG0180000600.01.T01:intron 15.0%
!! TATAATAACTAAACCAAAAA+GGG + Chr1:8477176-8477195 None:intergenic 15.0%
!!! ATTCATTTTATTAGATTCTT+CGG - Chr1:8478927-8478946 MsG0180000600.01.T01:intron 15.0%
!!! TTAATGATTTTATTTATGTG+GGG + Chr1:8477341-8477360 None:intergenic 15.0%
!!! TTGTTTTCATTATAGATTAA+AGG - Chr1:8479515-8479534 MsG0180000600.01.T01:intron 15.0%
!!! TTTATTAAATGAACTTGTTT+TGG - Chr1:8482868-8482887 MsG0180000600.01.T01:intron 15.0%
!! ATATTAGAGTTTAATTATGG+TGG - Chr1:8477253-8477272 MsG0180000600.01.T01:intron 20.0%
!! CAAATAAATGAAATATGCAT+AGG + Chr1:8481320-8481339 None:intergenic 20.0%
!! CTATGCATATTTCATTTATT+TGG - Chr1:8481318-8481337 MsG0180000600.01.T01:intron 20.0%
!! GATCTTAATATGATTGTAAA+AGG + Chr1:8482782-8482801 None:intergenic 20.0%
!! GTAAAAAGTAGTGAAATAAA+AGG + Chr1:8482633-8482652 None:intergenic 20.0%
!! TAATTACCTTAAGATGTAAT+TGG - Chr1:8478650-8478669 MsG0180000600.01.T01:intron 20.0%
!! TATGTTATAGGTGAAATATT+TGG - Chr1:8483029-8483048 MsG0180000600.01.T01:intron 20.0%
!! TATTAGAGTTTAATTATGGT+GGG - Chr1:8477254-8477273 MsG0180000600.01.T01:intron 20.0%
!! TGAAAAACATTTATTGTGTT+TGG - Chr1:8482054-8482073 MsG0180000600.01.T01:intron 20.0%
!! TTGAGAAAATATATGAATGA+CGG - Chr1:8477087-8477106 MsG0180000600.01.T01:CDS 20.0%
!! TTTCAATATCAGTTTAAATC+TGG - Chr1:8478881-8478900 MsG0180000600.01.T01:intron 20.0%
!!! AAGATATAGTTGAGTTTTAT+TGG - Chr1:8477659-8477678 MsG0180000600.01.T01:CDS 20.0%
!!! ACAAAACCTTAATTTGATAA+TGG - Chr1:8483154-8483173 MsG0180000600.01.T01:CDS 20.0%
!!! ATTTAAGACATTTCTACATA+CGG + Chr1:8481234-8481253 None:intergenic 20.0%
!!! CAAAACCTTAATTTGATAAT+GGG - Chr1:8483155-8483174 MsG0180000600.01.T01:CDS 20.0%
!!! GAAATAAGTTGAAACAATTA+CGG - Chr1:8479944-8479963 MsG0180000600.01.T01:intron 20.0%
!!! TATCAAATTAAGGTTTTGTA+AGG + Chr1:8483153-8483172 None:intergenic 20.0%
!!! TGAAAGATTCAAATTTTCTA+TGG + Chr1:8482232-8482251 None:intergenic 20.0%
!!! TTTAGTTTGCTTGATATAAT+TGG - Chr1:8481911-8481930 MsG0180000600.01.T01:intron 20.0%
!!! TTTCTTTTTAATTTTTTCGG+TGG - Chr1:8480451-8480470 MsG0180000600.01.T01:CDS 20.0%
! AACTAGATTAATTCAGTATG+AGG + Chr1:8480237-8480256 None:intergenic 25.0%
! ACTAATCCAATTACATCTTA+AGG + Chr1:8478659-8478678 None:intergenic 25.0%
! ACTTATTTCCATAAATTCTC+CGG + Chr1:8479933-8479952 None:intergenic 25.0%
! ATACAGAAAGAAGCTATATA+TGG - Chr1:8480260-8480279 MsG0180000600.01.T01:intron 25.0%
! ATATACCATAGAACTTAAAG+AGG + Chr1:8480048-8480067 None:intergenic 25.0%
! ATATATGAGTTTAATTGTGG+TGG + Chr1:8477427-8477446 None:intergenic 25.0%
! ATCAACTATTTATGTGGAAA+TGG - Chr1:8482548-8482567 MsG0180000600.01.T01:intron 25.0%
! ATGGTTATTCTTCATCATTA+AGG - Chr1:8482738-8482757 MsG0180000600.01.T01:intron 25.0%
! ATTATTGTTGATGCTAAATC+TGG - Chr1:8481686-8481705 MsG0180000600.01.T01:intron 25.0%
! CTGTTAACCAATAAGATATT+AGG + Chr1:8478121-8478140 None:intergenic 25.0%
! GAAATCCCATTATCAAATTA+AGG + Chr1:8483163-8483182 None:intergenic 25.0%
! GACAACATTCAAACAATTAA+TGG - Chr1:8482719-8482738 MsG0180000600.01.T01:intron 25.0%
! GTGCAAAAGATTAGAATTTA+AGG + Chr1:8478813-8478832 None:intergenic 25.0%
! TATCAAAAAGATCAGTTCAA+CGG + Chr1:8481157-8481176 None:intergenic 25.0%
! TATGCAATCAACTATTTATG+TGG - Chr1:8482542-8482561 MsG0180000600.01.T01:intron 25.0%
! TATTTCATCGAACTTAACTT+AGG - Chr1:8479762-8479781 MsG0180000600.01.T01:CDS 25.0%
! TTATATCTGTGGTATGTTAT+AGG - Chr1:8483017-8483036 MsG0180000600.01.T01:intron 25.0%
! TTCATCCAGGAAATAATTAA+AGG - Chr1:8479415-8479434 MsG0180000600.01.T01:intron 25.0%
! TTGATACTGTGAAAAAATTG+CGG - Chr1:8481284-8481303 MsG0180000600.01.T01:intron 25.0%
!! AAGAAAACTCATTTTCAAAG+GGG + Chr1:8481632-8481651 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG + Chr1:8479992-8480011 None:intergenic 25.0%
!! ATGGTAAATTTGCATTTTGT+AGG - Chr1:8479558-8479577 MsG0180000600.01.T01:intron 25.0%
!! CAAGAAAACTCATTTTCAAA+GGG + Chr1:8481633-8481652 None:intergenic 25.0%
!! CAGATTGATAATTTAGTGAA+GGG - Chr1:8483113-8483132 MsG0180000600.01.T01:intron 25.0%
!! GAGTAATAGTTTGCATTAAA+AGG - Chr1:8481383-8481402 MsG0180000600.01.T01:intron 25.0%
!! TATTTGGTGAAATGAACAAA+TGG - Chr1:8481334-8481353 MsG0180000600.01.T01:intron 25.0%
!! TCTAAAATAAGACAAACTCA+AGG + Chr1:8478016-8478035 None:intergenic 25.0%
!! TCTTTTTGATATTTTCGATG+AGG - Chr1:8481166-8481185 MsG0180000600.01.T01:intron 25.0%
!! TGCATCATTGATTACAAATT+TGG - Chr1:8479142-8479161 MsG0180000600.01.T01:intron 25.0%
!! TTAGTTAACATTTCCCTTTT+TGG - Chr1:8477160-8477179 MsG0180000600.01.T01:CDS 25.0%
!!! ACTTTTTCATGTTTTGTTGT+TGG - Chr1:8478441-8478460 MsG0180000600.01.T01:intron 25.0%
!!! AGATGTAATTGGATTAGTAT+TGG - Chr1:8478661-8478680 MsG0180000600.01.T01:intron 25.0%
!!! ATGCTAGTGATTTTAGTTAT+TGG - Chr1:8482291-8482310 MsG0180000600.01.T01:intron 25.0%
!!! ATGTTTTTCAAAGAGTTCTA+TGG + Chr1:8482044-8482063 None:intergenic 25.0%
!!! CTTTTTCATGTTTTGTTGTT+GGG - Chr1:8478442-8478461 MsG0180000600.01.T01:intron 25.0%
!!! GATGTAATTGGATTAGTATT+GGG - Chr1:8478662-8478681 MsG0180000600.01.T01:intron 25.0%
!!! TAGTTGAGTTTTATTGGATA+TGG - Chr1:8477665-8477684 MsG0180000600.01.T01:CDS 25.0%
!!! TGCTAGTGATTTTAGTTATT+GGG - Chr1:8482292-8482311 MsG0180000600.01.T01:intron 25.0%
!!! TGTTTTTCAAAGAGTTCTAT+GGG + Chr1:8482043-8482062 None:intergenic 25.0%
!!! TTTTTCATGTTTTGTTGTTG+GGG - Chr1:8478443-8478462 MsG0180000600.01.T01:intron 25.0%
AAAATGTTCTGATGACATTG+TGG - Chr1:8478710-8478729 MsG0180000600.01.T01:intron 30.0%
AAACTATTCCGGAGAATTTA+TGG - Chr1:8479922-8479941 MsG0180000600.01.T01:intron 30.0%
AAATAGTTGATTGCATACCA+CGG + Chr1:8482539-8482558 None:intergenic 30.0%
AACGAAGAAGTCAATTCAAA+TGG - Chr1:8480171-8480190 MsG0180000600.01.T01:intron 30.0%
AACTAATTCATGTTCTCTGT+TGG + Chr1:8479310-8479329 None:intergenic 30.0%
AACTTCTTATCTTGTGTTGT+TGG - Chr1:8478503-8478522 MsG0180000600.01.T01:intron 30.0%
AAGAGCAATCATTATATCTG+TGG - Chr1:8483006-8483025 MsG0180000600.01.T01:intron 30.0%
AATCACTACTAATCACTAAG+TGG - Chr1:8481973-8481992 MsG0180000600.01.T01:intron 30.0%
AATCTTGCTTCATATCAGAA+TGG - Chr1:8479539-8479558 MsG0180000600.01.T01:intron 30.0%
AATGAGTAGTTTAGAAAGCT+AGG + Chr1:8480402-8480421 None:intergenic 30.0%
AATGGGATTTCCAGAAAATT+TGG - Chr1:8483172-8483191 MsG0180000600.01.T01:CDS 30.0%
AATGTCTTAAATTGCAGTTG+TGG - Chr1:8481242-8481261 MsG0180000600.01.T01:intron 30.0%
ACATTTATTGTGTTTGGATG+TGG - Chr1:8482060-8482079 MsG0180000600.01.T01:intron 30.0%
ACCATTAAAATGGTGTGTAA+TGG + Chr1:8477631-8477650 None:intergenic 30.0%
AGAAAGACCAAAATACAAAG+AGG + Chr1:8480786-8480805 None:intergenic 30.0%
AGACACTCCTAATATCTTAT+TGG - Chr1:8478111-8478130 MsG0180000600.01.T01:intron 30.0%
AGATGTTGTACCAATTTAGT+GGG - Chr1:8480810-8480829 MsG0180000600.01.T01:intron 30.0%
AGTACTTAGATGTTAATCAG+TGG - Chr1:8481492-8481511 MsG0180000600.01.T01:CDS 30.0%
AGTATGCTAACCTTTATTAG+TGG + Chr1:8480377-8480396 None:intergenic 30.0%
ATCAAACACTTTACTACTAG+AGG - Chr1:8478048-8478067 MsG0180000600.01.T01:intron 30.0%
ATCTACTTGTATTTGCATTG+TGG - Chr1:8480541-8480560 MsG0180000600.01.T01:intron 30.0%
ATGGGATTTCCAGAAAATTT+GGG - Chr1:8483173-8483192 MsG0180000600.01.T01:CDS 30.0%
ATGTGATTTAGAAAAACACG+TGG + Chr1:8477131-8477150 None:intergenic 30.0%
ATTAAGATCTCAGAGTTTGA+AGG - Chr1:8482793-8482812 MsG0180000600.01.T01:intron 30.0%
ATTCAGTATGAGGAGTAAAA+TGG + Chr1:8480227-8480246 None:intergenic 30.0%
CAAAAGGTTCTCATTTATCT+AGG - Chr1:8479675-8479694 MsG0180000600.01.T01:intron 30.0%
CATAAACTGATCCTTTAAAC+AGG + Chr1:8481197-8481216 None:intergenic 30.0%
CATTTATTGTGTTTGGATGT+GGG - Chr1:8482061-8482080 MsG0180000600.01.T01:intron 30.0%
GGAAATCAGCTTAATGTAAA+GGG + Chr1:8480604-8480623 None:intergenic 30.0%
GTCTGTTAAAGAAAATGGAA+CGG + Chr1:8478353-8478372 None:intergenic 30.0%
TCCTTTATTGCAATCAAATC+TGG + Chr1:8479186-8479205 None:intergenic 30.0%
TGTTCTATTACTTCATTGCA+GGG - Chr1:8481804-8481823 MsG0180000600.01.T01:intron 30.0%
TTATCCTCTTGAACTACAAA+AGG - Chr1:8479659-8479678 MsG0180000600.01.T01:intron 30.0%
TTCACGTCATACCATTAAAA+TGG + Chr1:8477641-8477660 None:intergenic 30.0%
TTCAGTATGAGGAGTAAAAT+GGG + Chr1:8480226-8480245 None:intergenic 30.0%
TTCATAAGCACCTATATGAT+AGG + Chr1:8479833-8479852 None:intergenic 30.0%
TTGTTCTATTACTTCATTGC+AGG - Chr1:8481803-8481822 MsG0180000600.01.T01:intron 30.0%
! AAGTAAACCTATCCTGTTTT+GGG - Chr1:8482336-8482355 MsG0180000600.01.T01:intron 30.0%
! AATTTTCATCTTGTAGACAC+TGG - Chr1:8482096-8482115 MsG0180000600.01.T01:intron 30.0%
! AGCTATATATGGATTAACAG+AGG - Chr1:8480271-8480290 MsG0180000600.01.T01:intron 30.0%
! CCAAGAAAACTCATTTTCAA+AGG + Chr1:8481634-8481653 None:intergenic 30.0%
! CTTTTGATCGAACACTTAAT+AGG + Chr1:8478571-8478590 None:intergenic 30.0%
! GCAGATTGATAATTTAGTGA+AGG - Chr1:8483112-8483131 MsG0180000600.01.T01:intron 30.0%
! GTGATTAGTAGTGATTAGTT+AGG + Chr1:8481969-8481988 None:intergenic 30.0%
! TAAGTAAACCTATCCTGTTT+TGG - Chr1:8482335-8482354 MsG0180000600.01.T01:intron 30.0%
! TCCATTACACACCATTTTAA+TGG - Chr1:8477627-8477646 MsG0180000600.01.T01:intron 30.0%
! TTATTAGATTCTTCGGCTTT+TGG - Chr1:8478934-8478953 MsG0180000600.01.T01:intron 30.0%
! TTCTACAGTTTTCAACCATA+CGG + Chr1:8477009-8477028 None:intergenic 30.0%
!! AAAAAATGAAAGCGTCTTGT+TGG - Chr1:8478200-8478219 MsG0180000600.01.T01:CDS 30.0%
!! AGATACAAAGCTTTGAACTA+TGG + Chr1:8482265-8482284 None:intergenic 30.0%
!! ATACAAAGCTTTGAACTATG+GGG + Chr1:8482263-8482282 None:intergenic 30.0%
!! CATTACAGTTTAAGTTGAGT+TGG + Chr1:8478788-8478807 None:intergenic 30.0%
!! CCTTTGAAAATGAGTTTTCT+TGG - Chr1:8481631-8481650 MsG0180000600.01.T01:intron 30.0%
!! GATACAAAGCTTTGAACTAT+GGG + Chr1:8482264-8482283 None:intergenic 30.0%
!! GCTGTTTTCATAAACTATTC+CGG - Chr1:8479911-8479930 MsG0180000600.01.T01:intron 30.0%
!! TTGGATTAGTATTGGGAAAA+TGG - Chr1:8478669-8478688 MsG0180000600.01.T01:intron 30.0%
!!! GAACTTGTTTTGGTGATTTT+AGG - Chr1:8482878-8482897 MsG0180000600.01.T01:intron 30.0%
!!! GCAATTTTTTCACAGTATCA+AGG + Chr1:8481285-8481304 None:intergenic 30.0%
!!! GCTAGTGATTTTAGTTATTG+GGG - Chr1:8482293-8482312 MsG0180000600.01.T01:intron 30.0%
AAAACCTTGTTAGAAGAGTG+AGG + Chr1:8478375-8478394 None:intergenic 35.0%
AAATGGTGTAGCAAGCAAAA+AGG - Chr1:8480637-8480656 MsG0180000600.01.T01:CDS 35.0%
AACGACATCTAAATGTGATG+AGG + Chr1:8482655-8482674 None:intergenic 35.0%
AACTTAACTTAGGCTCTACT+TGG - Chr1:8479772-8479791 MsG0180000600.01.T01:CDS 35.0%
AAGTCATCAATTCTTACTCC+TGG + Chr1:8482576-8482595 None:intergenic 35.0%
ACAAATTTGGACTTCTTTGC+AGG - Chr1:8479155-8479174 MsG0180000600.01.T01:intron 35.0%
ACATCTAAGTACTTCAGTCA+TGG + Chr1:8481485-8481504 None:intergenic 35.0%
ACCTTTATTAGTGGAACAAG+AGG + Chr1:8480368-8480387 None:intergenic 35.0%
AGAACACATCGTCAACTTAA+AGG - Chr1:8479723-8479742 MsG0180000600.01.T01:CDS 35.0%
AGGTTTACTTATTCGAACAG+AGG + Chr1:8482326-8482345 None:intergenic 35.0%
AGTAAAATGGGAAAACGAGA+TGG + Chr1:8480214-8480233 None:intergenic 35.0%
ATAAGACAAACTCAAGGCAA+AGG + Chr1:8478010-8478029 None:intergenic 35.0%
ATGAGGTTTGTCCTGTTTAA+AGG - Chr1:8481183-8481202 MsG0180000600.01.T01:intron 35.0%
CAAGCAAACTAAACTTACCA+TGG + Chr1:8481904-8481923 None:intergenic 35.0%
CAGATGTTGTACCAATTTAG+TGG - Chr1:8480809-8480828 MsG0180000600.01.T01:intron 35.0%
CATATGATAGTTGCAGTTGA+TGG + Chr1:8482602-8482621 None:intergenic 35.0%
CTATGGCCAATGTTAAGTTT+GGG + Chr1:8482215-8482234 None:intergenic 35.0%
GAAAAAATTGCGGACAAATG+CGG - Chr1:8481294-8481313 MsG0180000600.01.T01:intron 35.0%
GAAGGCCTTTAATTATTTCC+TGG + Chr1:8479423-8479442 None:intergenic 35.0%
GATATAATGATTGCTCTTCC+AGG + Chr1:8483004-8483023 None:intergenic 35.0%
GCATTGTGGCTTGAAAATTA+TGG - Chr1:8480555-8480574 MsG0180000600.01.T01:intron 35.0%
GCCAGATTTGATTGCAATAA+AGG - Chr1:8479182-8479201 MsG0180000600.01.T01:intron 35.0%
GGCACTAAGAGTTATATCTT+TGG - Chr1:8482455-8482474 MsG0180000600.01.T01:intron 35.0%
GGCTTGAAAATTATGGTCTA+GGG - Chr1:8480562-8480581 MsG0180000600.01.T01:intron 35.0%
GGGAAATCAGCTTAATGTAA+AGG + Chr1:8480605-8480624 None:intergenic 35.0%
GTGAGGTCTGTTAAAGAAAA+TGG + Chr1:8478358-8478377 None:intergenic 35.0%
GTGGAATACATGATTGCTAT+TGG + Chr1:8477600-8477619 None:intergenic 35.0%
TACTCATAATCCCAAAACCA+TGG + Chr1:8478738-8478757 None:intergenic 35.0%
TAGAACTTAAAGAGGTTCAG+TGG + Chr1:8480040-8480059 None:intergenic 35.0%
TAGTTTATGCTCTTTCATCC+AGG - Chr1:8479402-8479421 MsG0180000600.01.T01:intron 35.0%
TCAACAATCTTCAAGTGCTT+TGG + Chr1:8479445-8479464 None:intergenic 35.0%
TCAACTGCAACTATCATATG+AGG - Chr1:8482602-8482621 MsG0180000600.01.T01:intron 35.0%
TCACAAAACAATGTTCGTGT+TGG - Chr1:8478592-8478611 MsG0180000600.01.T01:intron 35.0%
TCATCTGTATTCCCTCATTT+GGG - Chr1:8479019-8479038 MsG0180000600.01.T01:intron 35.0%
TCCTCTTGTTCCACTAATAA+AGG - Chr1:8480364-8480383 MsG0180000600.01.T01:intron 35.0%
TCTATGGCCAATGTTAAGTT+TGG + Chr1:8482216-8482235 None:intergenic 35.0%
TGAGTACAATACACGAAAAG+TGG + Chr1:8478838-8478857 None:intergenic 35.0%
TGGCAAATCATCCACAATTT+GGG - Chr1:8478954-8478973 MsG0180000600.01.T01:intron 35.0%
TGGCTTGAAAATTATGGTCT+AGG - Chr1:8480561-8480580 MsG0180000600.01.T01:intron 35.0%
TGTGCATATCATAGCATACT+CGG - Chr1:8480676-8480695 MsG0180000600.01.T01:intron 35.0%
TTCAACGGAATTACACATCT+GGG + Chr1:8481142-8481161 None:intergenic 35.0%
TTCCACAATCAAATGAAACC+AGG + Chr1:8482829-8482848 None:intergenic 35.0%
TTCTTGCCCAAACTTAACAT+TGG - Chr1:8482206-8482225 MsG0180000600.01.T01:intron 35.0%
TTGGCAAATCATCCACAATT+TGG - Chr1:8478953-8478972 MsG0180000600.01.T01:intron 35.0%
TTGTGCAGGCTAATCTTATT+CGG - Chr1:8481654-8481673 MsG0180000600.01.T01:intron 35.0%
TTTCACAGTATCAAGGATCA+CGG + Chr1:8481278-8481297 None:intergenic 35.0%
! AGAACCTTTTGTAGTTCAAG+AGG + Chr1:8479666-8479685 None:intergenic 35.0%
! AGATTCCACTGTTGTTTAAC+TGG + Chr1:8478288-8478307 None:intergenic 35.0%
! AGTAAACCTATCCTGTTTTG+GGG - Chr1:8482337-8482356 MsG0180000600.01.T01:intron 35.0%
! ATCTTGTGTTGTTGGTATTC+AGG - Chr1:8478511-8478530 MsG0180000600.01.T01:intron 35.0%
! ATGAACAAATGGAGTGTTCA+TGG - Chr1:8481345-8481364 MsG0180000600.01.T01:intron 35.0%
! ATGTTTCTGAGTATGAAGAG+TGG - Chr1:8479596-8479615 MsG0180000600.01.T01:intron 35.0%
! CTGAACCTCTTTAAGTTCTA+TGG - Chr1:8480040-8480059 MsG0180000600.01.T01:intron 35.0%
! GTATTCTGTTGTTTACCACA+TGG - Chr1:8479231-8479250 MsG0180000600.01.T01:intron 35.0%
! TATTGAAGGCCCAAATTTTC+TGG + Chr1:8483185-8483204 None:intergenic 35.0%
! TTAGTAGTGATTAGTTAGGC+TGG + Chr1:8481965-8481984 None:intergenic 35.0%
! TTTGTTGTCCTGTTGGAAAA+CGG - Chr1:8482909-8482928 MsG0180000600.01.T01:intron 35.0%
!! ATGGATTAACAGAGGTTTTG+AGG - Chr1:8480279-8480298 MsG0180000600.01.T01:intron 35.0%
!! ATGGTGTGTAATGGATCATT+TGG + Chr1:8477622-8477641 None:intergenic 35.0%
!! ATGTTGCTGCTTTACTAATG+CGG - Chr1:8481423-8481442 MsG0180000600.01.T01:intron 35.0%
!! TGAAGAATTTGTTGTCCTGT+TGG - Chr1:8482902-8482921 MsG0180000600.01.T01:intron 35.0%
!! TGGATTAACAGAGGTTTTGA+GGG - Chr1:8480280-8480299 MsG0180000600.01.T01:intron 35.0%
AACTAAACTTACCATGGCGA+TGG + Chr1:8481898-8481917 None:intergenic 40.0%
AAGAACGATGAAGGAGAATG+GGG - Chr1:8476919-8476938 MsG0180000600.01.T01:CDS 40.0%
AAGAAGAAGATCACGATCTG+AGG - Chr1:8476951-8476970 MsG0180000600.01.T01:CDS 40.0%
AAGCCTAGTCTCCTAGATAA+TGG + Chr1:8481536-8481555 None:intergenic 40.0%
AAGTTCAACGTTTGCGACAA+AGG + Chr1:8482188-8482207 None:intergenic 40.0%
AATTTAGTGAAGGGAGCTTC+AGG - Chr1:8483122-8483141 MsG0180000600.01.T01:intron 40.0%
ACAATCAAATGAAACCAGGC+AGG + Chr1:8482825-8482844 None:intergenic 40.0%
ACATCTGGGCAATCTAAATG+AGG + Chr1:8481128-8481147 None:intergenic 40.0%
ACCGTAAGAATTCATACCCT+CGG + Chr1:8481867-8481886 None:intergenic 40.0%
AGAGGAAGTTGAATGGAAGT+TGG + Chr1:8480350-8480369 None:intergenic 40.0%
ATACTTGTGTGCCCAAATGA+GGG + Chr1:8479033-8479052 None:intergenic 40.0%
ATCAATGCAACCCCAAATTG+TGG + Chr1:8478968-8478987 None:intergenic 40.0%
ATTTATGTGGAAATGGCTCC+AGG - Chr1:8482555-8482574 MsG0180000600.01.T01:intron 40.0%
CAGGTGTGGAGTAAAACTAA+TGG + Chr1:8482418-8482437 None:intergenic 40.0%
CGCATATGCACCTATCATAT+AGG - Chr1:8479820-8479839 MsG0180000600.01.T01:intron 40.0%
CTCATCTGTATTCCCTCATT+TGG - Chr1:8479018-8479037 MsG0180000600.01.T01:intron 40.0%
GAACCATTATCTAGGAGACT+AGG - Chr1:8481530-8481549 MsG0180000600.01.T01:CDS 40.0%
GAAGAACGATGAAGGAGAAT+GGG - Chr1:8476918-8476937 MsG0180000600.01.T01:CDS 40.0%
GGAGTCTGTAAGACATGAAA+AGG + Chr1:8481944-8481963 None:intergenic 40.0%
GGCAAATCATCCACAATTTG+GGG - Chr1:8478955-8478974 MsG0180000600.01.T01:intron 40.0%
GTATTCTTGTACTGCTGATC+AGG - Chr1:8482477-8482496 MsG0180000600.01.T01:intron 40.0%
GTGCATATCATAGCATACTC+GGG - Chr1:8480677-8480696 MsG0180000600.01.T01:intron 40.0%
GTTCAACGGAATTACACATC+TGG + Chr1:8481143-8481162 None:intergenic 40.0%
GTTCTCTGTTGGTCAAAAGA+TGG + Chr1:8479299-8479318 None:intergenic 40.0%
TACCATGCAACCCACTAAAT+TGG + Chr1:8480823-8480842 None:intergenic 40.0%
TAGTGGAGCAGGTTAGAAAT+TGG - Chr1:8481712-8481731 MsG0180000600.01.T01:intron 40.0%
TCTGAGTATGAAGAGTGGTA+TGG - Chr1:8479601-8479620 MsG0180000600.01.T01:intron 40.0%
TGAAGAACGATGAAGGAGAA+TGG - Chr1:8476917-8476936 MsG0180000600.01.T01:CDS 40.0%
TGATTGCTCTTCCAGGAATT+CGG + Chr1:8482997-8483016 None:intergenic 40.0%
TGCCTGGTTTCATTTGATTG+TGG - Chr1:8482824-8482843 MsG0180000600.01.T01:intron 40.0%
TGGAACAAGAGGAAGTTGAA+TGG + Chr1:8480357-8480376 None:intergenic 40.0%
TTCACAGTATCAAGGATCAC+GGG + Chr1:8481277-8481296 None:intergenic 40.0%
TTGTTTAACTGGTCGGTCTT+AGG + Chr1:8478277-8478296 None:intergenic 40.0%
TTTATGCATCAGAGGGTCAA+GGG - Chr1:8480886-8480905 MsG0180000600.01.T01:CDS 40.0%
! AATGTTCGTGTTGGTGTTCT+TGG - Chr1:8478601-8478620 MsG0180000600.01.T01:intron 40.0%
! ACACCATTTTGAGCCATCAA+CGG + Chr1:8480626-8480645 None:intergenic 40.0%
! ACCGAGGGTATGAATTCTTA+CGG - Chr1:8481863-8481882 MsG0180000600.01.T01:intron 40.0%
! ATGAGTTTTCTTGGTTGTGC+AGG - Chr1:8481640-8481659 MsG0180000600.01.T01:intron 40.0%
! CAATCTTCAAGTGCTTTGGA+AGG + Chr1:8479441-8479460 None:intergenic 40.0%
! GATGCTAAATCTGGTGTTAG+TGG - Chr1:8481695-8481714 MsG0180000600.01.T01:intron 40.0%
! GCAGATGCCTCTTTGTATTT+TGG - Chr1:8480776-8480795 MsG0180000600.01.T01:intron 40.0%
! GGATGCAGATTTTTCTGATG+TGG - Chr1:8479203-8479222 MsG0180000600.01.T01:intron 40.0%
! TCCACTGTTGTTTAACTGGT+CGG + Chr1:8478284-8478303 None:intergenic 40.0%
! TTAAGCTGATTTCCCGTTGA+TGG - Chr1:8480610-8480629 MsG0180000600.01.T01:intron 40.0%
! TTTTATGCATCAGAGGGTCA+AGG - Chr1:8480885-8480904 MsG0180000600.01.T01:CDS 40.0%
!! GTGTGTAATGGATCATTTGG+TGG + Chr1:8477619-8477638 None:intergenic 40.0%
!! TACCAATTTAGTGGGTTGCA+TGG - Chr1:8480818-8480837 MsG0180000600.01.T01:intron 40.0%
!! TGTGGGTTTTATGCATCAGA+GGG - Chr1:8480879-8480898 MsG0180000600.01.T01:CDS 40.0%
!!! ATTAACAGAGGTTTTGAGGG+AGG - Chr1:8480283-8480302 MsG0180000600.01.T01:intron 40.0%
AAATGAAACCAGGCAGGACA+AGG + Chr1:8482819-8482838 None:intergenic 45.0%
ACCGACCAGTTAAACAACAG+TGG - Chr1:8478280-8478299 MsG0180000600.01.T01:intron 45.0%
AGAACGATGAAGGAGAATGG+GGG - Chr1:8476920-8476939 MsG0180000600.01.T01:CDS 45.0%
AGAGGTTCAGTGGTTTACGA+AGG + Chr1:8480030-8480049 None:intergenic 45.0%
ATCTGCGTGAAGAACGATGA+AGG - Chr1:8476910-8476929 MsG0180000600.01.T01:CDS 45.0%
ATGGAAGTTGGATAGCAACC+AGG + Chr1:8480338-8480357 None:intergenic 45.0%
ATTGTTCACTGAAGTGACCG+AGG - Chr1:8481847-8481866 MsG0180000600.01.T01:intron 45.0%
CACACGTGGAACCATTATCT+AGG - Chr1:8481522-8481541 MsG0180000600.01.T01:CDS 45.0%
CAGACCTCACTCTTCTAACA+AGG - Chr1:8478368-8478387 MsG0180000600.01.T01:CDS 45.0%
CATACTTGTGTGCCCAAATG+AGG + Chr1:8479034-8479053 None:intergenic 45.0%
CCACTCTTACCATTGGAATC+AGG + Chr1:8482437-8482456 None:intergenic 45.0%
CCTCGAACTCATAGTGTGAA+AGG - Chr1:8482939-8482958 MsG0180000600.01.T01:intron 45.0%
CCTCTGCTTCGAAAATGCAT+AGG + Chr1:8481096-8481115 None:intergenic 45.0%
CCTGATTCCAATGGTAAGAG+TGG - Chr1:8482434-8482453 MsG0180000600.01.T01:intron 45.0%
CCTTTCACACTATGAGTTCG+AGG + Chr1:8482942-8482961 None:intergenic 45.0%
CTCATTTGGGCACACAAGTA+TGG - Chr1:8479032-8479051 MsG0180000600.01.T01:intron 45.0%
CTTACCATTGGAATCAGGTG+TGG + Chr1:8482432-8482451 None:intergenic 45.0%
GAAAATGGAACGGAATGCTG+TGG + Chr1:8478343-8478362 None:intergenic 45.0%
GAGGTTCAGTGGTTTACGAA+GGG + Chr1:8480029-8480048 None:intergenic 45.0%
TACTCCACACCTGATTCCAA+TGG - Chr1:8482425-8482444 MsG0180000600.01.T01:intron 45.0%
TGTGATCCCCAAAACAGGAT+AGG + Chr1:8482346-8482365 None:intergenic 45.0%
TTACTAATGCGGCTGTCTAG+TGG - Chr1:8481434-8481453 MsG0180000600.01.T01:intron 45.0%
TTGTTCACTGAAGTGACCGA+GGG - Chr1:8481848-8481867 MsG0180000600.01.T01:intron 45.0%
TTTACCACATGGAACTACGC+AGG - Chr1:8479242-8479261 MsG0180000600.01.T01:intron 45.0%
TTTGGGCACACAAGTATGGT+TGG - Chr1:8479036-8479055 MsG0180000600.01.T01:intron 45.0%
! AAATCTGGTGTTAGTGGAGC+AGG - Chr1:8481701-8481720 MsG0180000600.01.T01:intron 45.0%
! AATGGAGTGTTCATGGCAGA+AGG - Chr1:8481352-8481371 MsG0180000600.01.T01:intron 45.0%
! ACATTGTGGCTCCATGGTTT+TGG - Chr1:8478724-8478743 MsG0180000600.01.T01:intron 45.0%
! AGCAACCAGGATTAGCAACT+AGG + Chr1:8480325-8480344 None:intergenic 45.0%
! ATGGAGTGTTCATGGCAGAA+GGG - Chr1:8481353-8481372 MsG0180000600.01.T01:intron 45.0%
! ATGGTCTAGGGTGTTAAGCT+TGG - Chr1:8480574-8480593 MsG0180000600.01.T01:intron 45.0%
! CACCATTTTGAGCCATCAAC+GGG + Chr1:8480625-8480644 None:intergenic 45.0%
! CATTGTGGCTCCATGGTTTT+GGG - Chr1:8478725-8478744 MsG0180000600.01.T01:intron 45.0%
! CCTATGCATTTTCGAAGCAG+AGG - Chr1:8481093-8481112 MsG0180000600.01.T01:CDS 45.0%
! CTTAGTGCCACTCTTACCAT+TGG + Chr1:8482444-8482463 None:intergenic 45.0%
! GAATGACTCCGTTTTCCAAC+AGG + Chr1:8482920-8482939 None:intergenic 45.0%
! TCAGTGGTTGATTTCACACG+TGG - Chr1:8481508-8481527 MsG0180000600.01.T01:CDS 45.0%
! TGTTTTCCTGACCGAATTCC+TGG - Chr1:8482983-8483002 MsG0180000600.01.T01:intron 45.0%
! TTGCATTGATGACCGCTGAT+AGG - Chr1:8478978-8478997 MsG0180000600.01.T01:intron 45.0%
!! CATACCACGGCTCTGAAAAA+GGG + Chr1:8482526-8482545 None:intergenic 45.0%
!! GAAACAGAGGCAGGTATTGA+AGG + Chr1:8483199-8483218 None:intergenic 45.0%
!! GTGTGGGTTTTATGCATCAG+AGG - Chr1:8480878-8480897 MsG0180000600.01.T01:CDS 45.0%
!! TCTAGTGGATTGGTGGAAGT+TGG - Chr1:8481449-8481468 MsG0180000600.01.T01:CDS 45.0%
!! TTCCCGTTGATGGCTCAAAA+TGG - Chr1:8480620-8480639 MsG0180000600.01.T01:CDS 45.0%
!!! ATTTTTCTTTTTAATTTTTT+CGG - Chr1:8480448-8480467 MsG0180000600.01.T01:CDS 5.0%
!!! TCTAATATTTTTTTTTTTTA+GGG + Chr1:8477241-8477260 None:intergenic 5.0%
AACCATACGGATCTTGCTGC+TGG + Chr1:8476996-8477015 None:intergenic 50.0%
AACGATGAAGGAGAATGGGG+GGG - Chr1:8476922-8476941 MsG0180000600.01.T01:CDS 50.0%
ACAGCTCCAGAAATCGAGCA+GGG - Chr1:8482363-8482382 MsG0180000600.01.T01:intron 50.0%
ACTCGGGCGAGTATGGATAA+TGG - Chr1:8480693-8480712 MsG0180000600.01.T01:intron 50.0%
ATAAAACCCACACCCCTCCT+AGG + Chr1:8480871-8480890 None:intergenic 50.0%
ATAAGTCCCACCTGCAAACC+TGG + Chr1:8479643-8479662 None:intergenic 50.0%
ATAGCATACTCGGGCGAGTA+TGG - Chr1:8480686-8480705 MsG0180000600.01.T01:intron 50.0%
ATGACCGCTGATAGGAAAGC+TGG - Chr1:8478986-8479005 MsG0180000600.01.T01:intron 50.0%
CAACATCTCGCGATTCATGC+TGG + Chr1:8481409-8481428 None:intergenic 50.0%
CTGATGACATTGTGGCTCCA+TGG - Chr1:8478718-8478737 MsG0180000600.01.T01:intron 50.0%
CTGTCCAGCTTTCCTATCAG+CGG + Chr1:8478993-8479012 None:intergenic 50.0%
CTTGGAGCAAGTGGCTATAC+TGG - Chr1:8478619-8478638 MsG0180000600.01.T01:intron 50.0%
GAACGATGAAGGAGAATGGG+GGG - Chr1:8476921-8476940 MsG0180000600.01.T01:CDS 50.0%
TGAACCTGCGTAGTTCCATG+TGG + Chr1:8479249-8479268 None:intergenic 50.0%
TGGTTTACGAAGGGCAGGAA+TGG + Chr1:8480020-8480039 None:intergenic 50.0%
TTCAGTGGTTTACGAAGGGC+AGG + Chr1:8480025-8480044 None:intergenic 50.0%
! AATGCGGCTGTCTAGTGGAT+TGG - Chr1:8481439-8481458 MsG0180000600.01.T01:CDS 50.0%
! GTTGGTGTTCTTGGAGCAAG+TGG - Chr1:8478610-8478629 MsG0180000600.01.T01:intron 50.0%
! TGGAGTGTTCATGGCAGAAG+GGG - Chr1:8481354-8481373 MsG0180000600.01.T01:intron 50.0%
!! AAGTGGCTATACTGGCTCTG+AGG - Chr1:8478627-8478646 MsG0180000600.01.T01:intron 50.0%
!! GCATACCACGGCTCTGAAAA+AGG + Chr1:8482527-8482546 None:intergenic 50.0%
!!! CTTTCCCTTTTTCAGAGCCG+TGG - Chr1:8482519-8482538 MsG0180000600.01.T01:intron 50.0%
ACCTGCAACTGTGACAGCGA+TGG + Chr1:8482129-8482148 None:intergenic 55.0%
AGTGGTATGGTCAGCCACAC+AGG - Chr1:8479614-8479633 MsG0180000600.01.T01:intron 55.0%
ATCGCTGTCACAGTTGCAGG+TGG - Chr1:8482128-8482147 MsG0180000600.01.T01:intron 55.0%
CACAGCTCCAGAAATCGAGC+AGG - Chr1:8482362-8482381 MsG0180000600.01.T01:intron 55.0%
CCTGCAACTGTGACAGCGAT+GGG + Chr1:8482128-8482147 None:intergenic 55.0%
CGCTGATAGGAAAGCTGGAC+AGG - Chr1:8478991-8479010 MsG0180000600.01.T01:intron 55.0%
CTCCAGCAGCAAGATCCGTA+TGG - Chr1:8476991-8477010 MsG0180000600.01.T01:CDS 55.0%
CTGCAACTGTGACAGCGATG+GGG + Chr1:8482127-8482146 None:intergenic 55.0%
GCAAGTCCCTGCTCGATTTC+TGG + Chr1:8482372-8482391 None:intergenic 55.0%
GCTCTTCCAGGAATTCGGTC+AGG + Chr1:8482992-8483011 None:intergenic 55.0%
GGAGCTGTGATCCCCAAAAC+AGG + Chr1:8482351-8482370 None:intergenic 55.0%
GTGGTATGGTCAGCCACACA+GGG - Chr1:8479615-8479634 MsG0180000600.01.T01:intron 55.0%
TGCAACTGTGACAGCGATGG+GGG + Chr1:8482126-8482145 None:intergenic 55.0%
TGCATCAGAGGGTCAAGGGA+AGG - Chr1:8480890-8480909 MsG0180000600.01.T01:intron 55.0%
! TGCTGGAGCGTCAGTACTGT+TGG + Chr1:8476979-8476998 None:intergenic 55.0%
! TTTGAAGGCCTTGTCCTGCC+TGG - Chr1:8482808-8482827 MsG0180000600.01.T01:intron 55.0%
AACCCACACCCCTCCTAGGT+AGG + Chr1:8480867-8480886 None:intergenic 60.0%
ACCCACACCCCTCCTAGGTA+GGG + Chr1:8480866-8480885 None:intergenic 60.0%
CCCATCGCTGTCACAGTTGC+AGG - Chr1:8482125-8482144 MsG0180000600.01.T01:intron 60.0%
GCGCGCCTAGTTGCTAATCC+TGG - Chr1:8480317-8480336 MsG0180000600.01.T01:intron 60.0%
TGCAAACCTGGTGCCCTGTG+TGG + Chr1:8479631-8479650 None:intergenic 60.0%
! ACACAGGGCACCAGGTTTGC+AGG - Chr1:8479630-8479649 MsG0180000600.01.T01:intron 60.0%
! ACCCTACCTAGGAGGGGTGT+GGG - Chr1:8480862-8480881 MsG0180000600.01.T01:CDS 60.0%
! AGGGCACCAGGTTTGCAGGT+GGG - Chr1:8479634-8479653 MsG0180000600.01.T01:intron 60.0%
!! CAGGGACTTGCTGATGCTGC+AGG - Chr1:8482381-8482400 MsG0180000600.01.T01:intron 60.0%
!! GCGGCTGTCTAGTGGATTGG+TGG - Chr1:8481442-8481461 MsG0180000600.01.T01:CDS 60.0%
!! GGTGTTACTCGCCATCGCCA+TGG - Chr1:8481884-8481903 MsG0180000600.01.T01:intron 60.0%
GACCCTACCTAGGAGGGGTG+TGG - Chr1:8480861-8480880 MsG0180000600.01.T01:CDS 65.0%
! CAGGGCACCAGGTTTGCAGG+TGG - Chr1:8479633-8479652 MsG0180000600.01.T01:intron 65.0%
! GGTCAGCCACACAGGGCACC+AGG - Chr1:8479622-8479641 MsG0180000600.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 8476862 8483223 8476862 ID=MsG0180000600.01;Name=MsG0180000600.01
Chr1 mRNA 8476862 8483223 8476862 ID=MsG0180000600.01.T01;Parent=MsG0180000600.01;Name=MsG0180000600.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0.90|0.83|1|1|1|12|0|423
Chr1 exon 8483142 8483223 8483142 ID=MsG0180000600.01.T01:exon:2421;Parent=MsG0180000600.01.T01
Chr1 exon 8481437 8481552 8481437 ID=MsG0180000600.01.T01:exon:2422;Parent=MsG0180000600.01.T01
Chr1 exon 8481037 8481144 8481037 ID=MsG0180000600.01.T01:exon:2423;Parent=MsG0180000600.01.T01
Chr1 exon 8480822 8480908 8480822 ID=MsG0180000600.01.T01:exon:2424;Parent=MsG0180000600.01.T01
Chr1 exon 8480611 8480661 8480611 ID=MsG0180000600.01.T01:exon:2425;Parent=MsG0180000600.01.T01
Chr1 exon 8480434 8480505 8480434 ID=MsG0180000600.01.T01:exon:2426;Parent=MsG0180000600.01.T01
Chr1 exon 8479700 8479819 8479700 ID=MsG0180000600.01.T01:exon:2427;Parent=MsG0180000600.01.T01
Chr1 exon 8478363 8478423 8478363 ID=MsG0180000600.01.T01:exon:2428;Parent=MsG0180000600.01.T01
Chr1 exon 8478180 8478260 8478180 ID=MsG0180000600.01.T01:exon:2429;Parent=MsG0180000600.01.T01
Chr1 exon 8477639 8477718 8477639 ID=MsG0180000600.01.T01:exon:2430;Parent=MsG0180000600.01.T01
Chr1 exon 8477462 8477551 8477462 ID=MsG0180000600.01.T01:exon:2431;Parent=MsG0180000600.01.T01
Chr1 exon 8476862 8477185 8476862 ID=MsG0180000600.01.T01:exon:2432;Parent=MsG0180000600.01.T01
Chr1 CDS 8483142 8483223 8483142 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8481437 8481552 8481437 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8481037 8481144 8481037 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8480822 8480908 8480822 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8480611 8480661 8480611 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8480434 8480505 8480434 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8479700 8479819 8479700 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8478363 8478423 8478363 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8478180 8478260 8478180 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8477639 8477718 8477639 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8477462 8477551 8477462 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Chr1 CDS 8476862 8477185 8476862 ID=MsG0180000600.01.T01:cds;Parent=MsG0180000600.01.T01
Gene Sequence

>MsG0180000600.01.T01

ATGAAAAGGTGGAAATTGAACAACATTGATACTGAAGAGAAGAAAGAGATCTGCGTGAAGAACGATGAAGGAGAATGGGGGGGATTGATAAAGCAACAGAATGTGAAGAAGTTGTCGCCTATTAAGTGTTCGATCAAAAGTTCACAAAACAATGTTCGTGTTGGTGTTCTTGGAGCAAGTGGCTATACTGGCTCTGAGATTCTTCGGCTTTTGGCAAATCATCCACAATTTGGGGTTGCATTGATGACCGCTGATAGGAAAGCTGGACAGGCAATCTCATCTGTATTCCCTCATTTGGGCACACAAGACTTGCCAGATTTGATTGCAATAAAGGATGCAGATTTTTCTGATGTGGATGCTGTATTCTGTTGTTTACCACATGGAACTACGCAGGAAATAATTAAAGGCCTTCCAAAGCACTTGAAGATTGTTGATCTTTCAGCAGATTTTCGTCTAAGAGATGTTTCTGAGTATGAAGAGTGGTATGGTCAGCCACACAGGGCACCAGGTTTGCAGAAAGAAGCTATATATGGATTAACAGAGGTTTTGAGGGAGGAAATAAAGAATGCGCGCCTAGTTGCTAATCCTGGTTGCTATCCAACTTCCATTCAACTTCCTCTTGTTCCACTAATAAAGGCTAATCTTATTCGGACTACTAATATTATTGTTGATGCTAAATCTGGTGTTAGTGGAGCAGGGCGAAGTGCGAAAGAAAATTTATTGTTCACTGAAGTGACCGAGGGTATGAATTCTTACGGTGTTACTCGCCATCGCCATGCTCCAGAAATCGAGCAGGGACTTGCTGATGCTGCAGGTTCAAAAGTAACCATTAGTTTTACTCCACACCTGATTCCAATGAGCCGTGGTATGCAATCAACTATTTATGTGGAAATGGCTCCAGGAGTAAGAATTGATGACTTGCGCCATCAACTGCAACTATCATATGAGGATGAAGAATTTGTTGTCCTGTTGGAAAACGGAGTCATTCCTCGAACTCATAGTGTGAAAGGATCAAATTACTGTTTATTCAATGTTTTCCTGACCGAATTCCTGGAAGAGCAATCATTATATCTGTGGTATGTTATAGGTGAAATATTTGGATTACTTAATTATACTATATATATTATTGCAAAGGCTCTAAGTATTGTTGATATGTTGTTGCAGATTGATAATTTAGTGAAGGGAGCTTCAGGTCAAGCCTTACAAAACCTTAATTTGATAATGGGATTTCCAGAAAATTTGGGCCTTCAATACCTGCCTCTGTTTCCATAG
Protein sequence

>MsG0180000600.01.T01

MKRWKLNNIDTEEKKEICVKNDEGEWGGLIKQQNVKKLSPIKCSIKSSQNNVRVGVLGASGYTGSEILRLLANHPQFGVALMTADRKAGQAISSVFPHLGTQDLPDLIAIKDADFSDVDAVFCCLPHGTTQEIIKGLPKHLKIVDLSADFRLRDVSEYEEWYGQPHRAPGLQKEAIYGLTEVLREEIKNARLVANPGCYPTSIQLPLVPLIKANLIRTTNIIVDAKSGVSGAGRSAKENLLFTEVTEGMNSYGVTRHRHAPEIEQGLADAAGSKVTISFTPHLIPMSRGMQSTIYVEMAPGVRIDDLRHQLQLSYEDEEFVVLLENGVIPRTHSVKGSNYCLFNVFLTEFLEEQSLYLWYVIGEIFGLLNYTIYIIAKALSIVDMLLQIDNLVKGASGQALQNLNLIMGFPENLGLQYLPLFP*