AlfalfaGEDB | MsG0880045483.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045483.01

KEGG: -
GO: GO:0003777 GO:0003824 GO:0005524 GO:0005856 GO:0007018 GO:0008017 GO:0016491 GO:0055114
PFAM: PF00225 PF00373

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045483.01.T01	XP_003629038.2	98.734	948	12	0	73	1020	307	1254	0	1921

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045483.01.T01	Q9FHN8	71.146	960	256	3	73	1013	303	1260	0	1367

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045483.01.T01	G7L7W2	98.734	948	12	0	73	1020	307	1254	0.0	1921

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000115.01	MsG0880045483.01	0.827758	1.310857e-54	1.277263e-51
MsG0180000557.01	MsG0880045483.01	0.815246	1.019817e-51	6.993735e-49
MsG0180000600.01	MsG0880045483.01	0.803647	3.155077e-49	1.594005e-46
MsG0180000835.01	MsG0880045483.01	0.803496	3.391213e-49	1.706720e-46
MsG0180001828.01	MsG0880045483.01	0.842760	2.123399e-58	3.251791e-55
MsG0180003094.01	MsG0880045483.01	0.806253	8.999455e-50	4.861856e-47
MsG0180003493.01	MsG0880045483.01	0.810733	9.953174e-51	6.047227e-48
MsG0180003920.01	MsG0880045483.01	0.804973	1.670241e-49	8.731805e-47
MsG0180003951.01	MsG0880045483.01	0.810146	1.332516e-50	7.970829e-48
MsG0180005524.01	MsG0880045483.01	0.801386	9.226832e-49	4.400593e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045483.01.T01	MTR_8g072430	98.734	948	12	0	73	1020	307	1254	0.0	1921
MsG0880045483.01.T01	MTR_5g025100	76.324	963	208	2	73	1016	303	1264	0.0	1500
MsG0880045483.01.T01	MTR_5g049620	41.555	373	214	3	613	982	346	717	3.39e-85	294
MsG0880045483.01.T01	MTR_5g049820	41.287	373	215	3	613	982	346	717	3.60e-84	293
MsG0880045483.01.T01	MTR_5g031470	41.287	373	215	3	613	982	371	742	3.60e-83	292
MsG0880045483.01.T01	MTR_2g082570	31.240	637	374	15	396	973	121	752	7.33e-81	280
MsG0880045483.01.T01	MTR_4g092140	35.101	547	300	18	452	962	130	657	8.95e-80	274
MsG0880045483.01.T01	MTR_7g112420	39.305	374	213	5	629	991	259	629	1.42e-79	278
MsG0880045483.01.T01	MTR_2g069950	36.310	504	288	9	509	988	198	692	3.01e-79	280
MsG0880045483.01.T01	MTR_1g082920	41.240	371	214	3	621	987	127	497	4.25e-79	275

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045483.01.T01	AT5G65930	71.146	960	256	3	73	1013	303	1260	0.0	1367
MsG0880045483.01.T01	AT5G65930	71.146	960	256	3	73	1013	309	1266	0.0	1367
MsG0880045483.01.T01	AT5G65930	70.968	961	258	3	72	1013	301	1259	0.0	1367
MsG0880045483.01.T01	AT5G27550	38.565	446	255	5	560	997	58	492	3.42e-87	297
MsG0880045483.01.T01	AT5G27550	38.565	446	255	5	560	997	58	492	3.42e-87	297
MsG0880045483.01.T01	AT2G22610	41.063	414	231	7	612	1016	388	797	3.04e-85	298
MsG0880045483.01.T01	AT2G22610	41.063	414	231	7	612	1016	389	798	3.77e-85	298
MsG0880045483.01.T01	AT2G22610	41.063	414	231	7	612	1016	388	797	3.80e-85	298
MsG0880045483.01.T01	AT4G27180	32.419	620	356	15	396	961	113	723	1.89e-82	283
MsG0880045483.01.T01	AT4G27180	32.419	620	356	15	396	961	113	723	1.89e-82	283

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Find 167 sgRNAs with CRISPR-Local

Find 438 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTCAGCAATTGCACG+AGG	0.712772	8:-59856557	None:intergenic
AAAATATTGTAAAGGTGAGC+TGG	0.474630	8:+59855325	MsG0880045483.01.T01:CDS
AAAATGCAAGAACAATTGGA+GGG	0.629431	8:+59854925	MsG0880045483.01.T01:CDS
AAACTGTATTTGAGGATACA+AGG	0.536909	8:+59856341	MsG0880045483.01.T01:CDS
AAAGCACGATCTTCTAGTGG+CGG	0.681163	8:+59854449	MsG0880045483.01.T01:CDS
AAATATTACCTTCAAGGAAA+AGG	0.466033	8:-59856612	None:intergenic
AAATCACCTGATCCTGTGAA+CGG	0.646420	8:+59852749	MsG0880045483.01.T01:CDS
AAATGAATGAAGAAAGTTCA+AGG	0.497666	8:+59857314	MsG0880045483.01.T01:CDS
AACAAATCCTTATCAGCACT+TGG	0.546054	8:+59857735	MsG0880045483.01.T01:CDS
AACAATGCAGGCATACATGG+TGG	0.684530	8:+59856844	MsG0880045483.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGCAAGAACAATTGG+AGG	+	Chr8:59854924-59854943	MsG0880045483.01.T01:CDS	30.0%
AAAATATTGTAAAGGTGAGC+TGG	+	Chr8:59855325-59855344	MsG0880045483.01.T01:CDS	30.0%
AAAATGCAAGAACAATTGGA+GGG	+	Chr8:59854925-59854944	MsG0880045483.01.T01:CDS	30.0%
AAACTGTATTTGAGGATACA+AGG	+	Chr8:59856341-59856360	MsG0880045483.01.T01:CDS	30.0%
AAAGCACACAATTAAAAGCA+TGG	-	Chr8:59854113-59854132	None:intergenic	30.0%
AAATGTTAATGCACAAAACC+AGG	-	Chr8:59850984-59851003	None:intergenic	30.0%
AACTCAAGAAACTGTATTTG+AGG	+	Chr8:59856333-59856352	MsG0880045483.01.T01:CDS	30.0%
AACTGTATTTGAGGATACAA+GGG	+	Chr8:59856342-59856361	MsG0880045483.01.T01:CDS	30.0%
AACTGTTATGATCAAGAGTT+TGG	-	Chr8:59857164-59857183	None:intergenic	30.0%
AAGAAAACTGAATTCCCATA+AGG	-	Chr8:59853947-59853966	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	59849862	59858733	59849862	ID=MsG0880045483.01;Name=MsG0880045483.01
Chr8	mRNA	59849862	59858733	59849862	ID=MsG0880045483.01.T01;Parent=MsG0880045483.01;Name=MsG0880045483.01.T01;_AED=0.35;_eAED=0.35;_QI=0\|0.31\|0.3\|0.95\|0.89\|0.9\|20\|173\|1020
Chr8	exon	59849862	59849975	59849862	ID=MsG0880045483.01.T01:exon:23021;Parent=MsG0880045483.01.T01
Chr8	exon	59850777	59850890	59850777	ID=MsG0880045483.01.T01:exon:23022;Parent=MsG0880045483.01.T01
Chr8	exon	59852671	59852770	59852671	ID=MsG0880045483.01.T01:exon:23023;Parent=MsG0880045483.01.T01
Chr8	exon	59852865	59853046	59852865	ID=MsG0880045483.01.T01:exon:23024;Parent=MsG0880045483.01.T01
Chr8	exon	59853164	59853279	59853164	ID=MsG0880045483.01.T01:exon:23025;Parent=MsG0880045483.01.T01
Chr8	exon	59853411	59853513	59853411	ID=MsG0880045483.01.T01:exon:23026;Parent=MsG0880045483.01.T01
Chr8	exon	59853887	59854039	59853887	ID=MsG0880045483.01.T01:exon:23027;Parent=MsG0880045483.01.T01
Chr8	exon	59854154	59854300	59854154	ID=MsG0880045483.01.T01:exon:23028;Parent=MsG0880045483.01.T01
Chr8	exon	59854386	59854589	59854386	ID=MsG0880045483.01.T01:exon:23029;Parent=MsG0880045483.01.T01
Chr8	exon	59854886	59855050	59854886	ID=MsG0880045483.01.T01:exon:23030;Parent=MsG0880045483.01.T01
Chr8	exon	59855134	59855181	59855134	ID=MsG0880045483.01.T01:exon:23031;Parent=MsG0880045483.01.T01
Chr8	exon	59855299	59855439	59855299	ID=MsG0880045483.01.T01:exon:23032;Parent=MsG0880045483.01.T01
Chr8	exon	59855511	59855705	59855511	ID=MsG0880045483.01.T01:exon:23033;Parent=MsG0880045483.01.T01
Chr8	exon	59855954	59856080	59855954	ID=MsG0880045483.01.T01:exon:23034;Parent=MsG0880045483.01.T01
Chr8	exon	59856161	59856363	59856161	ID=MsG0880045483.01.T01:exon:23035;Parent=MsG0880045483.01.T01
Chr8	exon	59856443	59856625	59856443	ID=MsG0880045483.01.T01:exon:23036;Parent=MsG0880045483.01.T01
Chr8	exon	59856854	59856949	59856854	ID=MsG0880045483.01.T01:exon:23037;Parent=MsG0880045483.01.T01
Chr8	exon	59857208	59857405	59857208	ID=MsG0880045483.01.T01:exon:23038;Parent=MsG0880045483.01.T01
Chr8	exon	59857651	59857922	59857651	ID=MsG0880045483.01.T01:exon:23039;Parent=MsG0880045483.01.T01
Chr8	exon	59858359	59858733	59858359	ID=MsG0880045483.01.T01:exon:23040;Parent=MsG0880045483.01.T01
Chr8	CDS	59849862	59849975	59849862	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59850777	59850890	59850777	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59852671	59852770	59852671	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59852865	59853046	59852865	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59853164	59853279	59853164	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59853411	59853513	59853411	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59853887	59854039	59853887	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59854154	59854300	59854154	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59854386	59854589	59854386	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59854886	59855050	59854886	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59855134	59855181	59855134	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59855299	59855439	59855299	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59855511	59855705	59855511	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59855954	59856080	59855954	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59856161	59856363	59856161	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59856443	59856625	59856443	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59856854	59856949	59856854	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59857208	59857405	59857208	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59857651	59857922	59857651	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	CDS	59858359	59858560	59858359	ID=MsG0880045483.01.T01:cds;Parent=MsG0880045483.01.T01
Chr8	three_prime_UTR	59858561	59858733	59858561	ID=MsG0880045483.01.T01:three_prime_utr;Parent=MsG0880045483.01.T01

Gene Sequence

>MsG0880045483.01.T01

ATGCTCAACTGGGTCAGTGCTAATTTCAAACTCATGTCTGTTAATGCTTGGTTTTTCAAAGTTTGTGACTTTTTCCGATCTTATGCTTCCTTGTTTGATGTTTCAAGCATTTTGCACACCGTCAACTCTGTCAGACTGTTCAGCAGAACTCGCTGGAGCTTACCCTTAATCGACAGATTTCAGGTTAGAAAGTTTATTTTAATCCAGATATTGATAGATAAAACTATGGAACTTGCGGGGCTCATTAAACTGTCAACATACTCTAGCTTTAGTCTGTTTGAATGTCGTAAAGTTGTTACAAGTTCCAAATCACCTGATCCTGTGAACGAGGAGTACATTGGATTAGATGATAACAAATATATTGGGGATCTCTTGACGGAATTTAGAGCAGCAAAAGATCGAAGTAAAGGAGAAATCTTGCACTGTAAACTGATATTCAAGAAAAAGTTATTTCGTGAGTCAGATGAAGCCGTGACAGATCCGATGTTTGTGCAGTTGTCCTATGTACAAATGCAACATGATTATATTTTGGGTAATTATCCTGTTGGAAAAGACGATGCTGCTCAGCTTTCTGCATTACAAATCTTGGCTGAGATTGGATTTGTTAGCACACCTGAATCATGCACCAACTGGAATTCACTTCTGGAGCGATTCCTTCCCAGACAAATTTCAATGACACGAGCAAAACGTGAATGGGAGTTTGATATTCTCTCTAGATATCGTTCATTGGAGCATCAGACAAAAGATGATGCAAGACAACAATTTCTGCGTATATTGAGAGCACTCCCTTATGGGAATTCAGTTTTCTTCAACGTTCGCAAGATTGATGATCCTATTGGACTCTTGCCCGGACGAATAATAATTGGAATCAATAAAAGAGGGATTCATTTTTTTCGTCCAGTTCCTAAGGAATATTTGCACTCGGCTGAGTTGAGAGACATAATGCAATTTGGAAGCAGCAATTCAGCAGTCTTTTTCAAAATGCGAGTAGCAGGTGTTCTTCACATATTCCAGTTTGAAACCAAGCAGGGTGAAGAAATTTGTGTAGCTCTTCAGACACATATAAATGATGTAATGCTGCGCCGCTATTCGAAAGCACGATCTTCTAGTGGCGGTAGTTCTTTGAATGGAGATGCTTCTATCAATTCAAAGCCTCCTAATTTAGAATCATATGAGAAGCGCATTCAAGATTTATCAAAACTTGTTGAAGAATCTCAAAGAAGTGCTGATCAATTGCATAAAGATTTGCGTGAGAAGCAAGAAAAGGAAGTAAAAATGCAAGAACAATTGGAGGGTTTGAAGGAATCTTTAAAAGCTAATGAGCAAAATCTTCAAGCAGTTACAAGTGACTGTGAAAGACTTAGGTCACAATGCAATAAAAAAGATCAGGCGCTACAGGCTATAGAGAGCACTTCCAAAAAGGATCTCGTTGAAACAAACAACCAAGTGCTACAAAAGCTTAAATATGAGCTAAAATATTGTAAAGGTGAGCTGGATTCGGCTGAAGAAACTATCAAAACCTTGAGAAGTGAAAAGGCGATTTTGGAACAGAAGCTATCTGTGCTTGAGAAGAGGAATTCTGAAGAGAGTAGTTCTCTTCAACGGAAGCTTGAGCAAGAACGCAAAGCTGTGAAGTCTGAAGTGTATGACCTTGAAAGAAAGATAGAAGGGTATAGACAAGAATTAATGGCTGCTAAGTCTATTATTTCAGTCAAGGACTCTGAATTGGCTGCATTGCAAAATAATTTCAAGGAACTGGAAGAACTGCGAGAAATGAAAGAGGACATTGATAGAAAGAATGAACAGACAGCTTCCATATTGAAGATGCAAAGGGCTCAACTAGCCGAAATGGAAGGTCTTTATAAAGAAGAACAAGTTTTAAGAAAACGTTATTTTAATGTAATAGAAGACATGAAAGGCAAGATCAGGGTTTATTGCCGGCTAAGACCTATCAGTGAAAAAGAGGTTGCTGAGAAAGAAAGAGAAGCTGTTACTGCGGTAGATGAATTTACTGTTGAGTTTCTCTGGAAAGATGATAATCCAAAACAGTATATATATGATCGTGTTTTTGGTGGTGATGCAACTCAAGAAACTGTATTTGAGGATACAAGGTATTTGGTGCAATCTGCTGTTGATGGTTATAATGTGTGCATATTTGCTTACGGTCAAACTGGATCTGGAAAGACATTCACAATCTATGGATCAGAAGACAACCCCGGTCTTACACCTCGTGCAATTGCTGAACTTTTTAGAATTTTAAGGAGAGATAGTAACAAGTATTCCTTTTCCTTGAAGGCATACATGGTGGAATTATATCAAGATACCCTAATAGATCTTCTGTTACCTAAGAATGCAAAGCATTCTCGATTGGATATCAAGAAGGATTCAACGGGAATGGTTGTTGTGGAAAATGTGACAGTGATGTCAATTTCCACAATTGAAGAATTGAATTATATAATACAAAAGGGTTCTGAGCGACGACATATATCTGGGACACAAATGAATGAAGAAAGTTCAAGGTCTCATCTCATTCTTTCAATAGTAATTGAAAGTACCAACCTTCAAAGCCAGTCAGTTGCAAGGGGAAAGCTGAGTTTTGTTGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCCATGGGTAGTCAACTCAAAGAAGCACAAAGTATCAACAAATCCTTATCAGCACTTGGAGATGTTATAAGTGCTTTATCTTCTGGTGGCCAACACACACCTTACAGGAATCACAAGTTAACTATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTCAATGTTTCTCCAATAGAATCAAGCTTGGATGAGACTCATAACTCTCTCACGTACGCATCACGAGTAAGATCGATTGTGAATGACCCTAGCAAAAATGTTAGTTCGAAAGAAATTGCTCGATTAAAGAAGTTGGTTACATACTGGAAACAACAAGCTGGAAGAGCAATTGAGTATGAAGACTTGGAAGAAATTCAAGATGAACGACCAAACAAGGAGAGGCCAGATAGTCATGGTAGCTCTAGCTCTAGGTAA

Protein sequence

>MsG0880045483.01.T01

MLNWVSANFKLMSVNAWFFKVCDFFRSYASLFDVSSILHTVNSVRLFSRTRWSLPLIDRFQVRKFILIQILIDKTMELAGLIKLSTYSSFSLFECRKVVTSSKSPDPVNEEYIGLDDNKYIGDLLTEFRAAKDRSKGEILHCKLIFKKKLFRESDEAVTDPMFVQLSYVQMQHDYILGNYPVGKDDAAQLSALQILAEIGFVSTPESCTNWNSLLERFLPRQISMTRAKREWEFDILSRYRSLEHQTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIIIGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSSSGGSSLNGDASINSKPPNLESYEKRIQDLSKLVEESQRSADQLHKDLREKQEKEVKMQEQLEGLKESLKANEQNLQAVTSDCERLRSQCNKKDQALQAIESTSKKDLVETNNQVLQKLKYELKYCKGELDSAEETIKTLRSEKAILEQKLSVLEKRNSEESSSLQRKLEQERKAVKSEVYDLERKIEGYRQELMAAKSIISVKDSELAALQNNFKELEELREMKEDIDRKNEQTASILKMQRAQLAEMEGLYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPISEKEVAEKEREAVTAVDEFTVEFLWKDDNPKQYIYDRVFGGDATQETVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDNPGLTPRAIAELFRILRRDSNKYSFSLKAYMVELYQDTLIDLLLPKNAKHSRLDIKKDSTGMVVVENVTVMSISTIEELNYIIQKGSERRHISGTQMNEESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSMGSQLKEAQSINKSLSALGDVISALSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPIESSLDETHNSLTYASRVRSIVNDPSKNVSSKEIARLKKLVTYWKQQAGRAIEYEDLEEIQDERPNKERPDSHGSSSSR*