AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000798.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000798.01.T01 MTR_1g008220 77.305 282 26 3 1 244 1 282 2.41e-150 420
MsG0180000798.01.T01 MTR_1g008220 90.476 210 17 2 1 207 1 210 5.59e-134 378
MsG0180000798.01.T01 MTR_3g091340 58.865 282 68 8 1 240 1 276 6.20e-89 265
MsG0180000798.01.T01 MTR_3g091340 57.724 246 58 7 35 240 1 240 7.20e-71 217
MsG0180000798.01.T01 MTR_3g091340 57.551 245 58 7 36 240 9 247 6.50e-70 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000798.01.T01 AT5G53420 38.603 272 123 8 1 238 1 262 2.45e-49 163
MsG0180000798.01.T01 AT4G27900 37.770 278 115 8 1 239 1 259 2.87e-44 150
MsG0180000798.01.T01 AT4G27900 37.770 278 115 8 1 239 1 259 2.87e-44 150
MsG0180000798.01.T01 AT5G53420 38.776 196 109 5 1 194 1 187 2.40e-37 130
MsG0180000798.01.T01 AT5G53420 38.542 192 77 6 79 238 1 183 1.23e-29 110
MsG0180000798.01.T01 AT5G53420 38.542 192 77 6 79 238 1 183 1.23e-29 110
MsG0180000798.01.T01 AT5G53420 38.542 192 77 6 79 238 1 183 1.23e-29 110

Find 55 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTTCTCTTACTACAAC+TGG 0.317260 1:-11310724 MsG0180000798.01.T01:five_prime_UTR
TTCAGGAAATTTGAGTTCAA+TGG 0.350069 1:-11308192 MsG0180000798.01.T01:CDS
GCAAATCTTCCACGGATTCT+TGG 0.350555 1:+11306802 None:intergenic
GATAATAGTACATCAGGAAT+TGG 0.361584 1:+11308227 None:intergenic
CCTGCTTTCCTTGATTTCCC+TGG 0.370726 1:-11308143 MsG0180000798.01.T01:CDS
CCGTGGAAGATTTGCGAAAA+CGG 0.381688 1:-11306794 MsG0180000798.01.T01:CDS
GTTTCAATGAGAAACATAAA+AGG 0.384534 1:+11310682 None:intergenic
GATTGTGAGGAAGGGGTTTG+AGG 0.386629 1:+11310780 None:intergenic
CATGGTTTCAGTATGCTTGT+AGG 0.397320 1:-11306846 MsG0180000798.01.T01:CDS
ATCGTGTCAAAGGCTGAAAA+TGG 0.398193 1:+11306895 None:intergenic
AGGAAAGCAGGCTTCATTGC+AGG 0.402149 1:+11308155 None:intergenic
ACCGCGTTAAAATCAATTCC+AGG 0.422111 1:+11308125 None:intergenic
GAAATTTGAGTTCAATGGAT+TGG 0.431971 1:-11308187 MsG0180000798.01.T01:CDS
TTATCAAAGAGTGTCAGTTC+AGG 0.440427 1:-11308209 MsG0180000798.01.T01:CDS
GAGCAGGAATCTTGATTTCA+AGG 0.444374 1:+11308285 None:intergenic
CTCTTTGATAATAGTACATC+AGG 0.447091 1:+11308221 None:intergenic
GTATGTAAAGATTGTGAGGA+AGG 0.455281 1:+11310771 None:intergenic
TGAGAGTAATTATGTAGATA+AGG 0.456263 1:+11310590 None:intergenic
GAGAGTAATTATGTAGATAA+GGG 0.469610 1:+11310591 None:intergenic
AATCAATTCCAGGGAAATCA+AGG 0.470610 1:+11308135 None:intergenic
TGGGGAAGACATGTCGTCGC+AGG 0.471749 1:-11308429 MsG0180000798.01.T01:CDS
TCATAAGTCCAATGCTTCAA+TGG 0.475058 1:-11310534 MsG0180000798.01.T01:intron
CGGTTCTTCAATAATCGTCT+CGG 0.477444 1:+11308499 None:intergenic
ACATTATTAGAATTTGAGTT+CGG 0.481368 1:+11306871 None:intergenic
CGAGACGATTATTGAAGAAC+CGG 0.482715 1:-11308498 MsG0180000798.01.T01:CDS
TGGCTGCTTGCATTTGATCA+AGG 0.489809 1:+11308468 None:intergenic
GTCGCAGGGTCTAAAATCTT+CGG 0.499847 1:-11308414 MsG0180000798.01.T01:CDS
AGAGGGTACCATTGAAGCAT+TGG 0.503291 1:+11310526 None:intergenic
AGAATTTGATTTATTTGTAG+AGG 0.514069 1:-11308540 MsG0180000798.01.T01:CDS
TTCTCGTCAATGTTCAGAGC+AGG 0.527138 1:+11308269 None:intergenic
ATGTAAAGATTGTGAGGAAG+GGG 0.535767 1:+11310773 None:intergenic
ATTTGATCAAGGTCCATCTC+CGG 0.536269 1:+11308479 None:intergenic
CAAATTCTAATAATGTTGCA+TGG 0.537050 1:-11306864 MsG0180000798.01.T01:CDS
CCAGGGAAATCAAGGAAAGC+AGG 0.538494 1:+11308143 None:intergenic
GAATTTGATTTATTTGTAGA+GGG 0.539422 1:-11308539 MsG0180000798.01.T01:CDS
AGTTCAATGGATTGGATGCA+TGG 0.542974 1:-11308179 MsG0180000798.01.T01:CDS
ATTTCAAGGATTTCAGAAAG+AGG 0.543254 1:+11308299 None:intergenic
GCAGCCATGTCAATGATGTC+TGG 0.545025 1:-11308452 MsG0180000798.01.T01:CDS
TATGTAAAGATTGTGAGGAA+GGG 0.546950 1:+11310772 None:intergenic
GATTATTGAAGAACCGGAGA+TGG 0.549985 1:-11308492 MsG0180000798.01.T01:CDS
GGTTCTTCAATAATCGTCTC+GGG 0.551243 1:+11308500 None:intergenic
TGAGTTCGGAATCGTGTCAA+AGG 0.552285 1:+11306885 None:intergenic
CCGCGTTAAAATCAATTCCA+GGG 0.559154 1:+11308126 None:intergenic
GGGGAAGACATGTCGTCGCA+GGG 0.576526 1:-11308428 MsG0180000798.01.T01:CDS
CGGAGGAGTTAGATATCAAG+AGG 0.594972 1:-11306774 MsG0180000798.01.T01:CDS
CCATGTCAATGATGTCTGGT+GGG 0.605089 1:-11308448 MsG0180000798.01.T01:CDS
GTTTCAGTATGCTTGTAGGA+AGG 0.605930 1:-11306842 MsG0180000798.01.T01:CDS
GACAGTCAACCAAGAATCCG+TGG 0.616160 1:-11306811 MsG0180000798.01.T01:CDS
CCCACCAGACATCATTGACA+TGG 0.626711 1:+11308448 None:intergenic
GCCATGTCAATGATGTCTGG+TGG 0.631276 1:-11308449 MsG0180000798.01.T01:CDS
AGAAAGAGGTGATTCTATAG+CGG 0.645696 1:+11308313 None:intergenic
TGGAAGATTTGCGAAAACGG+AGG 0.654676 1:-11306791 MsG0180000798.01.T01:CDS
ACATCGCATATGATTGAACA+AGG 0.660417 1:+11308564 None:intergenic
GTATGTATGTAAAGATTGTG+AGG 0.669763 1:+11310767 None:intergenic
CATGTCAATGATGTCTGGTG+GGG 0.675165 1:-11308447 MsG0180000798.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAATACTAATATTTAAA+AGG - Chr1:11308851-11308870 MsG0180000798.01.T01:intron 10.0%
!! TATAAATTAAATAACATCTA+TGG - Chr1:11309530-11309549 MsG0180000798.01.T01:intron 10.0%
!!! TTAATTTTTCTTCAATTTTA+TGG - Chr1:11307749-11307768 MsG0180000798.01.T01:intron 10.0%
!! AAAAATTGATTAAGTTCATA+AGG - Chr1:11307548-11307567 MsG0180000798.01.T01:intron 15.0%
!! AATATTATTACCAAGAAAAA+AGG + Chr1:11307862-11307881 None:intergenic 15.0%
!! ATAAAAAATATCACAGAAAT+TGG + Chr1:11307078-11307097 None:intergenic 15.0%
!! ATATTATTACCAAGAAAAAA+GGG + Chr1:11307861-11307880 None:intergenic 15.0%
!! TAAATATATAGTTACAAAAG+AGG - Chr1:11307938-11307957 MsG0180000798.01.T01:intron 15.0%
!! TTAAACATTATATGTTGTAT+TGG - Chr1:11309561-11309580 MsG0180000798.01.T01:intron 15.0%
!! TTGAAGTTAGATTAATTTAA+CGG - Chr1:11308037-11308056 MsG0180000798.01.T01:intron 15.0%
!!! ATATTTCTTAATAGTTTTCT+AGG - Chr1:11307253-11307272 MsG0180000798.01.T01:intron 15.0%
!!! ATATTTTCTTTATGAGTATA+TGG - Chr1:11307474-11307493 MsG0180000798.01.T01:intron 15.0%
!!! TAATTTTAATCATATGTGAT+TGG - Chr1:11307417-11307436 MsG0180000798.01.T01:intron 15.0%
!!! TTATGATACTTTTCTATTAT+TGG - Chr1:11308884-11308903 MsG0180000798.01.T01:intron 15.0%
!! AAATGAATTTAAGAAAGTCT+TGG + Chr1:11310401-11310420 None:intergenic 20.0%
!! AATTCTCAATAGTTAGTTAA+TGG - Chr1:11308817-11308836 MsG0180000798.01.T01:intron 20.0%
!! ACATATAATGTTTAACAAAG+TGG + Chr1:11309556-11309575 None:intergenic 20.0%
!! ATTATGTACATAATTAGTTG+AGG + Chr1:11307317-11307336 None:intergenic 20.0%
!! TATAAATTAAGTAACATCCA+TGG + Chr1:11309807-11309826 None:intergenic 20.0%
!! TCTATGTATCTATCTATATA+TGG - Chr1:11307382-11307401 MsG0180000798.01.T01:intron 20.0%
!! TGAAGAAAAATTAAAGAACA+CGG + Chr1:11307743-11307762 None:intergenic 20.0%
!! TTCATAAAAGAAGAAAGTTA+TGG - Chr1:11308182-11308201 MsG0180000798.01.T01:CDS 20.0%
!! TTGCATCTCATTAAATATTA+AGG - Chr1:11310131-11310150 MsG0180000798.01.T01:intron 20.0%
!!! ACATTATTAGAATTTGAGTT+CGG + Chr1:11310686-11310705 None:intergenic 20.0%
!!! AGAATTTGATTTATTTGTAG+AGG - Chr1:11309014-11309033 MsG0180000798.01.T01:intron 20.0%
!!! CACATGTTAATAATTCATTT+TGG - Chr1:11307900-11307919 MsG0180000798.01.T01:intron 20.0%
!!! GAATTTGATTTATTTGTAGA+GGG - Chr1:11309015-11309034 MsG0180000798.01.T01:intron 20.0%
!!! TCTTGGTAATAATATTGAAA+AGG - Chr1:11307866-11307885 MsG0180000798.01.T01:intron 20.0%
!!! TTAAATTTTTATATTGGACC+TGG + Chr1:11309682-11309701 None:intergenic 20.0%
!!! TTTCAAAGTCAGATTTTTTT+GGG - Chr1:11308305-11308324 MsG0180000798.01.T01:CDS 20.0%
!!! TTTTATGAATACACAAAACA+CGG + Chr1:11308171-11308190 None:intergenic 20.0%
! AAAATTTCAAAAGATGTGTG+AGG + Chr1:11310106-11310125 None:intergenic 25.0%
! AAGAGAGAAGAAAAAAAAGA+GGG + Chr1:11307048-11307067 None:intergenic 25.0%
! AGGTTATTTGAATTGGTATT+AGG + Chr1:11308367-11308386 None:intergenic 25.0%
! ATTAATCTAACTTCAAAGTG+CGG + Chr1:11308033-11308052 None:intergenic 25.0%
! ATTCCATCAAGTAATTGTTA+AGG + Chr1:11308706-11308725 None:intergenic 25.0%
! ATTTAGTGAAGGAGATATAA+AGG - Chr1:11309470-11309489 MsG0180000798.01.T01:intron 25.0%
! CAAAAAAGATCTCTTAGAAA+AGG - Chr1:11309218-11309237 MsG0180000798.01.T01:intron 25.0%
! CAAATTCTAATAATGTTGCA+TGG - Chr1:11310690-11310709 MsG0180000798.01.T01:five_prime_UTR 25.0%
! CTCATTAAATATTAAGGATC+CGG - Chr1:11310137-11310156 MsG0180000798.01.T01:intron 25.0%
! GAGAGTAATTATGTAGATAA+GGG + Chr1:11306966-11306985 None:intergenic 25.0%
! GGAAATAAAAGTGATTAAGA+TGG - Chr1:11307693-11307712 MsG0180000798.01.T01:intron 25.0%
! GTTTCAATGAGAAACATAAA+AGG + Chr1:11306875-11306894 None:intergenic 25.0%
! TGAGAGTAATTATGTAGATA+AGG + Chr1:11306967-11306986 None:intergenic 25.0%
! TTCTATAACCTATGAAAACT+CGG - Chr1:11308567-11308586 MsG0180000798.01.T01:CDS 25.0%
! TTTGCCATATCAAAATGATT+TGG - Chr1:11309854-11309873 MsG0180000798.01.T01:intron 25.0%
!! ATATAATGTCTAAGACAAAG+AGG - Chr1:11309781-11309800 MsG0180000798.01.T01:intron 25.0%
!! GAAATTTGTAATTTGCATAG+TGG - Chr1:11308680-11308699 MsG0180000798.01.T01:intron 25.0%
!! TCTTACAAAACTAGTTTGTA+AGG + Chr1:11309654-11309673 None:intergenic 25.0%
!!! ATCATTTTGATATGGCAAAT+AGG + Chr1:11309853-11309872 None:intergenic 25.0%
!!! CATATTATTCCCTTTTTTCT+TGG - Chr1:11307849-11307868 MsG0180000798.01.T01:intron 25.0%
!!! CTTTCAAAGTCAGATTTTTT+TGG - Chr1:11308304-11308323 MsG0180000798.01.T01:CDS 25.0%
!!! TACACCAAATCATTTTGATA+TGG + Chr1:11309861-11309880 None:intergenic 25.0%
AAGAAAAACTCTCCAGATAT+AGG - Chr1:11309990-11310009 MsG0180000798.01.T01:intron 30.0%
AATGACAAAAGACATACTAG+GGG + Chr1:11308922-11308941 None:intergenic 30.0%
ACAAAAATGTTTGCAGAAAC+TGG - Chr1:11306931-11306950 MsG0180000798.01.T01:intron 30.0%
AGAATGACAAAAGACATACT+AGG + Chr1:11308924-11308943 None:intergenic 30.0%
ATTTCAAGGATTTCAGAAAG+AGG + Chr1:11309258-11309277 None:intergenic 30.0%
CAAGAGAGAAGAAAAAAAAG+AGG + Chr1:11307049-11307068 None:intergenic 30.0%
CTTTCTCTCTCTTTGTAAAA+TGG - Chr1:11308620-11308639 MsG0180000798.01.T01:intron 30.0%
GAAAAGATTTAGACCAATAG+AGG + Chr1:11308657-11308676 None:intergenic 30.0%
GAATGACAAAAGACATACTA+GGG + Chr1:11308923-11308942 None:intergenic 30.0%
GACTATCTAATCCAAATCAA+TGG + Chr1:11310276-11310295 None:intergenic 30.0%
GATAATAGTACATCAGGAAT+TGG + Chr1:11309330-11309349 None:intergenic 30.0%
GATATAGGAATAAGAAGACA+AGG - Chr1:11310005-11310024 MsG0180000798.01.T01:intron 30.0%
GTATGTATGTAAAGATTGTG+AGG + Chr1:11306790-11306809 None:intergenic 30.0%
TAAAGTCTTCTATGTTCATG+TGG + Chr1:11310063-11310082 None:intergenic 30.0%
TAACTACTGCAGAAAATTCT+CGG + Chr1:11308512-11308531 None:intergenic 30.0%
TATGTAAAGATTGTGAGGAA+GGG + Chr1:11306785-11306804 None:intergenic 30.0%
TATGTTGATGTATCTAGACT+CGG - Chr1:11309702-11309721 MsG0180000798.01.T01:intron 30.0%
TATTACTCAGCTCAAGAATA+TGG + Chr1:11308210-11308229 None:intergenic 30.0%
TCAACATTATACTTCATACC+AGG + Chr1:11310358-11310377 None:intergenic 30.0%
TGTCTTCTTATTCCTATATC+TGG + Chr1:11310005-11310024 None:intergenic 30.0%
TTGTTTGTATAACAGACTCT+TGG - Chr1:11309890-11309909 MsG0180000798.01.T01:intron 30.0%
TTTCTTTCTCTTACTACAAC+TGG - Chr1:11306830-11306849 MsG0180000798.01.T01:CDS 30.0%
TTTGCAAATACTAATACTCC+TGG - Chr1:11310337-11310356 MsG0180000798.01.T01:intron 30.0%
! AAAACTAGTTTGTAAGGTGA+GGG + Chr1:11309648-11309667 None:intergenic 30.0%
! AAACATTTTTGTTAGCTGAG+AGG + Chr1:11306923-11306942 None:intergenic 30.0%
! AACTTTTCGTACAAGCAAAA+TGG + Chr1:11308147-11308166 None:intergenic 30.0%
! AAGTACTTAAAAGCATGCAA+GGG + Chr1:11310591-11310610 None:intergenic 30.0%
! AATCATTGCTTCAACTTTTG+AGG - Chr1:11310488-11310507 MsG0180000798.01.T01:intron 30.0%
! CTCTTTGATAATAGTACATC+AGG + Chr1:11309336-11309355 None:intergenic 30.0%
! GAAATTTGAGTTCAATGGAT+TGG - Chr1:11309367-11309386 MsG0180000798.01.T01:intron 30.0%
! GGAGTATTAGTATTTGCAAA+TGG + Chr1:11310337-11310356 None:intergenic 30.0%
! GTTTTCACTTTAACTGTGTA+AGG - Chr1:11308746-11308765 MsG0180000798.01.T01:intron 30.0%
! TTCAGGAAATTTGAGTTCAA+TGG - Chr1:11309362-11309381 MsG0180000798.01.T01:intron 30.0%
!! ATCTGGAAAAGTGTTACAAA+AGG - Chr1:11307672-11307691 MsG0180000798.01.T01:intron 30.0%
!! ATTGATTTTAACGCGGTTTA+TGG - Chr1:11309435-11309454 MsG0180000798.01.T01:intron 30.0%
!!! AGATTTTTTTGGGTGAAGTA+TGG - Chr1:11308315-11308334 MsG0180000798.01.T01:CDS 30.0%
!!! GATTTTTTTGGGTGAAGTAT+GGG - Chr1:11308316-11308335 MsG0180000798.01.T01:CDS 30.0%
!!! GTAATCATGCTTGCTATTTT+TGG - Chr1:11307960-11307979 MsG0180000798.01.T01:intron 30.0%
AAAAAACTGCATCAGTAGCA+AGG - Chr1:11310559-11310578 MsG0180000798.01.T01:CDS 35.0%
AACTACTGCAGAAAATTCTC+GGG + Chr1:11308511-11308530 None:intergenic 35.0%
AAGAAGACAAGGAGAAACTT+TGG - Chr1:11310016-11310035 MsG0180000798.01.T01:intron 35.0%
AAGGAGAGGTTTATTGAAGA+AGG - Chr1:11307819-11307838 MsG0180000798.01.T01:intron 35.0%
AATCAATTCCAGGGAAATCA+AGG + Chr1:11309422-11309441 None:intergenic 35.0%
AATTCCATTGAACCTTGACA+TGG + Chr1:11308417-11308436 None:intergenic 35.0%
AATTTGAAAGCTGACAGCAT+AGG - Chr1:11310215-11310234 MsG0180000798.01.T01:intron 35.0%
ACATCGCATATGATTGAACA+AGG + Chr1:11308993-11309012 None:intergenic 35.0%
AGAAAGAGGTGATTCTATAG+CGG + Chr1:11309244-11309263 None:intergenic 35.0%
AGAAGACAAGGAGAAACTTT+GGG - Chr1:11310017-11310036 MsG0180000798.01.T01:intron 35.0%
AGACATTAATTCAGTCCAGA+AGG + Chr1:11308241-11308260 None:intergenic 35.0%
ATACTTGCTTCTCTTACATC+AGG + Chr1:11310167-11310186 None:intergenic 35.0%
ATCAAGCAAATGCAGTTCAA+AGG + Chr1:11307159-11307178 None:intergenic 35.0%
ATGTAAAGATTGTGAGGAAG+GGG + Chr1:11306784-11306803 None:intergenic 35.0%
ATGTTGATGTATCTAGACTC+GGG - Chr1:11309703-11309722 MsG0180000798.01.T01:intron 35.0%
CTCTCTTTGTAAAATGGTTG+AGG - Chr1:11308626-11308645 MsG0180000798.01.T01:intron 35.0%
CTCTGCATTAAAACACAGTA+AGG + Chr1:11308967-11308986 None:intergenic 35.0%
GCTGTCAGCTTTCAAATTAA+TGG + Chr1:11310213-11310232 None:intergenic 35.0%
GTATGTAAAGATTGTGAGGA+AGG + Chr1:11306786-11306805 None:intergenic 35.0%
GTGTCACAGGTTATTTGAAT+TGG + Chr1:11308374-11308393 None:intergenic 35.0%
TACTTGCTTCTCTTACATCA+GGG + Chr1:11310166-11310185 None:intergenic 35.0%
TCAATAAACCTCTCCTTAGT+GGG + Chr1:11307816-11307835 None:intergenic 35.0%
TCATAAGTCCAATGCTTCAA+TGG - Chr1:11307020-11307039 MsG0180000798.01.T01:intron 35.0%
TGCATAATGCAGTTATTGCA+GGG - Chr1:11310308-11310327 MsG0180000798.01.T01:intron 35.0%
TTCAATAAACCTCTCCTTAG+TGG + Chr1:11307817-11307836 None:intergenic 35.0%
TTTGAACTGCATTTGCTTGA+TGG - Chr1:11307158-11307177 MsG0180000798.01.T01:intron 35.0%
! AAACTAGTTTGTAAGGTGAG+GGG + Chr1:11309647-11309666 None:intergenic 35.0%
! AAACTTTGGGAGGAAAATCA+AGG - Chr1:11310030-11310049 MsG0180000798.01.T01:intron 35.0%
! AACAAACTCGTCCATTGATT+TGG - Chr1:11310262-11310281 MsG0180000798.01.T01:intron 35.0%
! CAAAACTAGTTTGTAAGGTG+AGG + Chr1:11309649-11309668 None:intergenic 35.0%
! GAAGTACTTAAAAGCATGCA+AGG + Chr1:11310592-11310611 None:intergenic 35.0%
! GAATGATACCGAGTTTTCAT+AGG + Chr1:11308578-11308597 None:intergenic 35.0%
! TGGCCTTAACAATTACTTGA+TGG - Chr1:11308700-11308719 MsG0180000798.01.T01:intron 35.0%
! TTAAAAGCATGCAAGGGATT+AGG + Chr1:11310585-11310604 None:intergenic 35.0%
! TTGGATTAGATAGTCGAGAT+CGG - Chr1:11310281-11310300 MsG0180000798.01.T01:intron 35.0%
!! CTAGAGTTAGCTTTAATTGC+TGG - Chr1:11307649-11307668 MsG0180000798.01.T01:intron 35.0%
!! TTAGCTTTAATTGCTGGATC+TGG - Chr1:11307655-11307674 MsG0180000798.01.T01:intron 35.0%
!! TTATCAAAGAGTGTCAGTTC+AGG - Chr1:11309345-11309364 MsG0180000798.01.T01:intron 35.0%
!!! TAGTTTTGTAAGAATGAGCC+AGG - Chr1:11309661-11309680 MsG0180000798.01.T01:intron 35.0%
ACCGCGTTAAAATCAATTCC+AGG + Chr1:11309432-11309451 None:intergenic 40.0%
AGAAGCTTTGCGTAAACGAA+AGG + Chr1:11308450-11308469 None:intergenic 40.0%
AGACACTTAGCTACTCATTG+AGG + Chr1:11310459-11310478 None:intergenic 40.0%
AGTAATAGTCCAGTTCCTTC+TGG - Chr1:11308223-11308242 MsG0180000798.01.T01:CDS 40.0%
AGTCATACTCAAAGCACAAG+TGG - Chr1:11307620-11307639 MsG0180000798.01.T01:intron 40.0%
ATCGTGTCAAAGGCTGAAAA+TGG + Chr1:11310662-11310681 None:intergenic 40.0%
ATTTGATCAAGGTCCATCTC+CGG + Chr1:11309078-11309097 None:intergenic 40.0%
CAATAAACCTCTCCTTAGTG+GGG + Chr1:11307815-11307834 None:intergenic 40.0%
CATGGTTTCAGTATGCTTGT+AGG - Chr1:11310708-11310727 MsG0180000798.01.T01:five_prime_UTR 40.0%
CATTGAACCTTGACATGGAA+AGG + Chr1:11308412-11308431 None:intergenic 40.0%
CCGCGTTAAAATCAATTCCA+GGG + Chr1:11309431-11309450 None:intergenic 40.0%
CGAGACGATTATTGAAGAAC+CGG - Chr1:11309056-11309075 MsG0180000798.01.T01:intron 40.0%
CGGTTCTTCAATAATCGTCT+CGG + Chr1:11309058-11309077 None:intergenic 40.0%
CGTTGAGAAGAGATAAGACT+TGG - Chr1:11309601-11309620 MsG0180000798.01.T01:intron 40.0%
CTGCATAATGCAGTTATTGC+AGG - Chr1:11310307-11310326 MsG0180000798.01.T01:intron 40.0%
CTTTCCATGTCAAGGTTCAA+TGG - Chr1:11308410-11308429 MsG0180000798.01.T01:CDS 40.0%
GAGCAGGAATCTTGATTTCA+AGG + Chr1:11309272-11309291 None:intergenic 40.0%
GATTAATCCAACGACTGATC+AGG - Chr1:11308086-11308105 MsG0180000798.01.T01:intron 40.0%
GATTATTGAAGAACCGGAGA+TGG - Chr1:11309062-11309081 MsG0180000798.01.T01:intron 40.0%
GGTTCTTCAATAATCGTCTC+GGG + Chr1:11309057-11309076 None:intergenic 40.0%
GTATAACAGACTCTTGGCAA+TGG - Chr1:11309896-11309915 MsG0180000798.01.T01:intron 40.0%
GTCTTATCTCTTCTCAACGT+GGG + Chr1:11309600-11309619 None:intergenic 40.0%
GTTGAAGTGTGAACTCATAG+TGG - Chr1:11307773-11307792 MsG0180000798.01.T01:intron 40.0%
GTTTCAGTATGCTTGTAGGA+AGG - Chr1:11310712-11310731 MsG0180000798.01.T01:five_prime_UTR 40.0%
TAATTCAGTCCAGAAGGAAC+TGG + Chr1:11308235-11308254 None:intergenic 40.0%
TACAAGCAAAATGGAACCCT+AGG + Chr1:11308138-11308157 None:intergenic 40.0%
TTCGTGTTTACTGAGTAACG+CGG + Chr1:11308794-11308813 None:intergenic 40.0%
TTCTCTTACATCAGGGAATC+CGG + Chr1:11310159-11310178 None:intergenic 40.0%
! AGTCTTATCTCTTCTCAACG+TGG + Chr1:11309601-11309620 None:intergenic 40.0%
!! AAGCGAACAACTTTTGAGTG+AGG - Chr1:11309182-11309201 MsG0180000798.01.T01:intron 40.0%
!! AGTTCAATGGATTGGATGCA+TGG - Chr1:11309375-11309394 MsG0180000798.01.T01:intron 40.0%
!! ATGCGAAGAGCATTTAGTGA+AGG - Chr1:11309459-11309478 MsG0180000798.01.T01:intron 40.0%
!! CCCTGGAATTGATTTTAACG+CGG - Chr1:11309428-11309447 MsG0180000798.01.T01:intron 40.0%
AGAAGCTGCATAAGCAACCT+AGG - Chr1:11308118-11308137 MsG0180000798.01.T01:intron 45.0%
AGACAAGGAGAAACTTTGGG+AGG - Chr1:11310020-11310039 MsG0180000798.01.T01:intron 45.0%
AGCTCTTCCTTTCCATGTCA+AGG - Chr1:11308402-11308421 MsG0180000798.01.T01:CDS 45.0%
ATCTAACTTCAAAGTGCGGC+TGG + Chr1:11308029-11308048 None:intergenic 45.0%
CATGTCAATGATGTCTGGTG+GGG - Chr1:11309107-11309126 MsG0180000798.01.T01:intron 45.0%
CCATGTCAATGATGTCTGGT+GGG - Chr1:11309106-11309125 MsG0180000798.01.T01:intron 45.0%
CCGTGGAAGATTTGCGAAAA+CGG - Chr1:11310760-11310779 MsG0180000798.01.T01:five_prime_UTR 45.0%
CGGAGGAGTTAGATATCAAG+AGG - Chr1:11310780-11310799 MsG0180000798.01.T01:five_prime_UTR 45.0%
GAAGCTGCATAAGCAACCTA+GGG - Chr1:11308119-11308138 MsG0180000798.01.T01:intron 45.0%
GCAAATCTTCCACGGATTCT+TGG + Chr1:11310755-11310774 None:intergenic 45.0%
GGCAATGGTAACATGAGTGT+TGG - Chr1:11309911-11309930 MsG0180000798.01.T01:intron 45.0%
GGTTGAGGAACAACCTCTAT+TGG - Chr1:11308641-11308660 MsG0180000798.01.T01:intron 45.0%
GTGCAGTTGCTGAGAAGAAA+AGG + Chr1:11309956-11309975 None:intergenic 45.0%
TCAGCCATCAACCAACAGTT+GGG - Chr1:11308279-11308298 MsG0180000798.01.T01:CDS 45.0%
TGAGTTCGGAATCGTGTCAA+AGG + Chr1:11310672-11310691 None:intergenic 45.0%
TGGAAGATTTGCGAAAACGG+AGG - Chr1:11310763-11310782 MsG0180000798.01.T01:five_prime_UTR 45.0%
TGGCTGCTTGCATTTGATCA+AGG + Chr1:11309089-11309108 None:intergenic 45.0%
TTCAGCCATCAACCAACAGT+TGG - Chr1:11308278-11308297 MsG0180000798.01.T01:CDS 45.0%
TTCTCGTCAATGTTCAGAGC+AGG + Chr1:11309288-11309307 None:intergenic 45.0%
! AAGAAAAGGCCTCTCTAGAG+TGG + Chr1:11309942-11309961 None:intergenic 45.0%
! CCGTTTTCGCAAATCTTCCA+CGG + Chr1:11310763-11310782 None:intergenic 45.0%
! CTTTGAAAGAGCCCAACTGT+TGG + Chr1:11308293-11308312 None:intergenic 45.0%
! GTCGCAGGGTCTAAAATCTT+CGG - Chr1:11309140-11309159 MsG0180000798.01.T01:intron 45.0%
! TGTCTAAGACAAAGAGGCCA+TGG - Chr1:11309787-11309806 MsG0180000798.01.T01:intron 45.0%
! TGTCTTTTTCTGCCCCACTA+AGG - Chr1:11307800-11307819 MsG0180000798.01.T01:intron 45.0%
!! AGAGGGTACCATTGAAGCAT+TGG + Chr1:11307031-11307050 None:intergenic 45.0%
!!! AACATATTAAATTTTTATAT+TGG + Chr1:11309688-11309707 None:intergenic 5.0%
ACTGAGTAACGCGGATGAGT+TGG + Chr1:11308785-11308804 None:intergenic 50.0%
AGGAAAGCAGGCTTCATTGC+AGG + Chr1:11309402-11309421 None:intergenic 50.0%
ATCCAACGACTGATCAGGTG+CGG - Chr1:11308091-11308110 MsG0180000798.01.T01:intron 50.0%
CCAGGGAAATCAAGGAAAGC+AGG + Chr1:11309414-11309433 None:intergenic 50.0%
CCCACCAGACATCATTGACA+TGG + Chr1:11309109-11309128 None:intergenic 50.0%
CCTGCTTTCCTTGATTTCCC+TGG - Chr1:11309411-11309430 MsG0180000798.01.T01:intron 50.0%
CTGAGTAACGCGGATGAGTT+GGG + Chr1:11308784-11308803 None:intergenic 50.0%
GACAGTCAACCAAGAATCCG+TGG - Chr1:11310743-11310762 MsG0180000798.01.T01:five_prime_UTR 50.0%
GAGCTGAGTAGTAGTGTCAC+AGG + Chr1:11308387-11308406 None:intergenic 50.0%
GATTGTGAGGAAGGGGTTTG+AGG + Chr1:11306777-11306796 None:intergenic 50.0%
GCAGCCATGTCAATGATGTC+TGG - Chr1:11309102-11309121 MsG0180000798.01.T01:intron 50.0%
GCCATGTCAATGATGTCTGG+TGG - Chr1:11309105-11309124 MsG0180000798.01.T01:intron 50.0%
! AGAGCCCAACTGTTGGTTGA+TGG + Chr1:11308286-11308305 None:intergenic 50.0%
! TTGGCCAATCCACTCTAGAG+AGG - Chr1:11309930-11309949 MsG0180000798.01.T01:intron 50.0%
! TTTTCTGCCCCACTAAGGAG+AGG - Chr1:11307805-11307824 MsG0180000798.01.T01:intron 50.0%
!! AAGGCCTCTCTAGAGTGGAT+TGG + Chr1:11309937-11309956 None:intergenic 50.0%
AACCGCACCTGATCAGTCGT+TGG + Chr1:11308096-11308115 None:intergenic 55.0%
ACTTCAAAGTGCGGCTGGAG+AGG + Chr1:11308024-11308043 None:intergenic 55.0%
GTCCTCTTTAGCGCTGCACA+CGG - Chr1:11309725-11309744 MsG0180000798.01.T01:intron 55.0%
TTAGCGCTGCACACGGTGAA+CGG - Chr1:11309732-11309751 MsG0180000798.01.T01:intron 55.0%
! GCGGATGAGTTGGGCTACAT+GGG + Chr1:11308775-11308794 None:intergenic 55.0%
CACCGTGTGCAGCGCTAAAG+AGG + Chr1:11309730-11309749 None:intergenic 60.0%
GGGGAAGACATGTCGTCGCA+GGG - Chr1:11309126-11309145 MsG0180000798.01.T01:intron 60.0%
TGGGGAAGACATGTCGTCGC+AGG - Chr1:11309125-11309144 MsG0180000798.01.T01:intron 60.0%
! CGCGGATGAGTTGGGCTACA+TGG + Chr1:11308776-11308795 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 11306768 11310808 11306768 ID=MsG0180000798.01;Name=MsG0180000798.01
Chr1 mRNA 11306768 11310808 11306768 ID=MsG0180000798.01.T01;Parent=MsG0180000798.01;Name=MsG0180000798.01.T01;_AED=0.48;_eAED=0.52;_QI=169|0.5|0.33|1|1|1|3|0|244
Chr1 exon 11310535 11310808 11310535 ID=MsG0180000798.01.T01:exon:823;Parent=MsG0180000798.01.T01
Chr1 exon 11308127 11308591 11308127 ID=MsG0180000798.01.T01:exon:824;Parent=MsG0180000798.01.T01
Chr1 exon 11306768 11306932 11306768 ID=MsG0180000798.01.T01:exon:825;Parent=MsG0180000798.01.T01
Chr1 five_prime_UTR 11310640 11310808 11310640 ID=MsG0180000798.01.T01:five_prime_utr;Parent=MsG0180000798.01.T01
Chr1 CDS 11310535 11310639 11310535 ID=MsG0180000798.01.T01:cds;Parent=MsG0180000798.01.T01
Chr1 CDS 11308127 11308591 11308127 ID=MsG0180000798.01.T01:cds;Parent=MsG0180000798.01.T01
Chr1 CDS 11306768 11306932 11306768 ID=MsG0180000798.01.T01:cds;Parent=MsG0180000798.01.T01
Gene Sequence

>MsG0180000798.01.T01

ATGTTTGCAGAAACTGGTCTTCTTTTCCCTTATCTACATAATTACTCTCAAGAGTATCAACAACTTGAAGACTATTGCATGACTCATAAGTCCAATGCTTCAATGAGTGACCTTGTTCAATCATATGCGATGTCAGAATTTGATTTATTTGTAGAGGGAGATCTGTTCAAAGCACCCGAGACGATTATTGAAGAACCGGAGATGGACCTTGATCAAATGCAAGCAGCCATGTCAATGATGTCTGGTGGGGAAGACATGTCGTCGCAGGGTCTAAAATCTTCGGATATTGATGATGTGCTTCAAAGCGAACAACTTTTGAGTGAGGTCTACTATGATTGCAAAAAAGATCTCTTAGAAAAGGCCGCTATAGAATCACCTCTTTCTGAAATCCTTGAAATCAAGATTCCTGCTCTGAACATTGACGAGAATTCGATTCAAGAAAACAAACCAATTCCTGATGTACTATTATCAAAGAGTGTCAGTTCAGGAAATTTGAGTTCAATGGATTGGATGCATGGTCCTGCAATGAAGCCTGCTTTCCTTGATTTCCCTGGAATTGATTTTAACGCGAATATTTCAAAGACTCCATTTTCAGCCTTTGACACGATTCCGAACTCAAATTCTAATAATGTTGCATGGTTTCAGTATGCTTGTAGGAAGGCGCTTGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCGAAAACGGAGGAGTTAGATATCAAGAGGCAATGA
Protein sequence

>MsG0180000798.01.T01

MFAETGLLFPYLHNYSQEYQQLEDYCMTHKSNASMSDLVQSYAMSEFDLFVEGDLFKAPETIIEEPEMDLDQMQAAMSMMSGGEDMSSQGLKSSDIDDVLQSEQLLSEVYYDCKKDLLEKAAIESPLSEILEIKIPALNIDENSIQENKPIPDVLLSKSVSSGNLSSMDWMHGPAMKPAFLDFPGIDFNANISKTPFSAFDTIPNSNSNNVAWFQYACRKALADSQPRIRGRFAKTEELDIKRQ*