AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045256.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045256.01.T01 MTR_8g068830 84.906 53 8 0 1 53 63 115 7.49e-27 97.8
MsG0880045256.01.T01 MTR_8g068830 84.906 53 8 0 1 53 71 123 1.18e-26 97.4
MsG0880045256.01.T01 MTR_4g093600 55.102 49 22 0 1 49 83 131 2.11e-14 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045256.01.T01 AT2G22570 61.224 49 19 0 1 49 62 110 1.70e-19 77.0
MsG0880045256.01.T01 AT2G22570 61.224 49 19 0 1 49 62 110 3.24e-19 77.8

Find 45 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGATTTGGTCAAATAATT+TGG 0.138354 8:+56499515 MsG0880045256.01.T01:five_prime_UTR
GTCCTCGTTGATCTTGTTAA+TGG 0.182595 8:+56499668 MsG0880045256.01.T01:five_prime_UTR
TTATCCTCCTCATGTCTTAT+TGG 0.192817 8:+56499978 MsG0880045256.01.T01:CDS
GTATTGATTGATAATGTTAT+TGG 0.198327 8:+56503026 MsG0880045256.01.T01:three_prime_UTR
ATGACACCTTTGATGCTATC+TGG 0.225300 8:-56502874 None:intergenic
TATCCTCCTCATGTCTTATT+GGG 0.271755 8:+56499979 MsG0880045256.01.T01:CDS
CCTTATAAAATTACGTGATT+TGG 0.272101 8:+56499502 MsG0880045256.01.T01:five_prime_UTR
ATTCAGAGCCCATGTTGTTT+TGG 0.286383 8:-56499557 None:intergenic
TGAGGAGGATAAGGAGGTTC+AGG 0.372183 8:-56499967 None:intergenic
TCAAAGGTGTCATTGAATAA+AGG 0.380515 8:+56502884 MsG0880045256.01.T01:three_prime_UTR
TAAGGAGGTTCAGGAATATC+AGG 0.390296 8:-56499958 None:intergenic
GAATCAAGGTAAGCAAATAT+TGG 0.409329 8:-56499928 None:intergenic
AGGACTAATTTGCTTTCATC+AGG 0.417994 8:-56500003 None:intergenic
AAGAATAATTACGAAGTTGC+CGG 0.420829 8:-56499708 None:intergenic
TTATTGGAATGTGTTTATAC+TGG 0.423417 8:+56503042 MsG0880045256.01.T01:three_prime_UTR
GGTTTCTGCACCGTTGGATC+CGG 0.450802 8:+56499689 MsG0880045256.01.T01:five_prime_UTR
ATTATGTTCAATAACATGTT+TGG 0.454405 8:+56502947 MsG0880045256.01.T01:three_prime_UTR
GTTAATGGTTTCTGCACCGT+TGG 0.463955 8:+56499683 MsG0880045256.01.T01:five_prime_UTR
TACGAAGTTGCCGGATCCAA+CGG 0.481544 8:-56499699 None:intergenic
AATAAGACATGAGGAGGATA+AGG 0.483202 8:-56499976 None:intergenic
AAGTTATCTGATAGAAGAAG+AGG 0.488655 8:-56499633 None:intergenic
TGACACCTTTGATGCTATCT+GGG 0.494722 8:-56502873 None:intergenic
TGGAATGTGTTTATACTGGT+TGG 0.497121 8:+56503046 MsG0880045256.01.T01:three_prime_UTR
TCTATCAGATAACTTCAAAA+CGG 0.519741 8:+56499641 MsG0880045256.01.T01:five_prime_UTR
TGGTGTGCATTAAAAGTCCT+TGG 0.530824 8:+56502967 MsG0880045256.01.T01:three_prime_UTR
CACTTTACATAGCTGTGGAA+GGG 0.538165 8:+56502847 MsG0880045256.01.T01:CDS
AAGGAAACTTCGTTAAGTGT+TGG 0.539307 8:+56502903 MsG0880045256.01.T01:three_prime_UTR
ACTTTACATAGCTGTGGAAG+GGG 0.543910 8:+56502848 MsG0880045256.01.T01:CDS
CGATGAGAAAATTAGTAAGA+TGG 0.545937 8:+56499858 MsG0880045256.01.T01:exon
TGAGAAAATTAGTAAGATGG+TGG 0.546145 8:+56499861 MsG0880045256.01.T01:exon
CTCTGAATCTCAATCTCCGA+CGG 0.551673 8:+56499572 MsG0880045256.01.T01:five_prime_UTR
TCCGACGGTGGAGCTTGTAA+AGG 0.551838 8:+56499587 MsG0880045256.01.T01:five_prime_UTR
TGATGAAAGCAAATTAGTCC+TGG 0.560083 8:+56500005 MsG0880045256.01.T01:CDS
GCACTTTACATAGCTGTGGA+AGG 0.562839 8:+56502846 MsG0880045256.01.T01:CDS
TCCTTTACAAGCTCCACCGT+CGG 0.571855 8:-56499588 None:intergenic
TGAATCTCAATCTCCGACGG+TGG 0.574215 8:+56499575 MsG0880045256.01.T01:five_prime_UTR
GGGAGCCCAGATAGCATCAA+AGG 0.586512 8:+56502868 MsG0880045256.01.T01:exon
TATCAGGATGATGAGAATCA+AGG 0.588323 8:-56499942 None:intergenic
TGTTGCACTTTACATAGCTG+TGG 0.594693 8:+56502842 MsG0880045256.01.T01:CDS
AACTCCAAACCAAAACAACA+TGG 0.595457 8:+56499548 MsG0880045256.01.T01:five_prime_UTR
GGACCCAATAAGACATGAGG+AGG 0.623539 8:-56499982 None:intergenic
AAGACATGAGGAGGATAAGG+AGG 0.629193 8:-56499973 None:intergenic
TCAGGACCCAATAAGACATG+AGG 0.668347 8:-56499985 None:intergenic
ACTCCAAACCAAAACAACAT+GGG 0.686000 8:+56499549 MsG0880045256.01.T01:five_prime_UTR
AACCATTAACAAGATCAACG+AGG 0.806684 8:-56499670 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATAAAATCAAG+TGG - Chr8:56502126-56502145 None:intergenic 10.0%
!!! TTTTATTTTTAAAAACATTG+AGG + Chr8:56502136-56502155 MsG0880045256.01.T01:intron 10.0%
!!! TTTTCTAAAATTTATGTTAA+AGG + Chr8:56500644-56500663 MsG0880045256.01.T01:intron 10.0%
!! AAATAAAATAATAACAACAC+AGG - Chr8:56501061-56501080 None:intergenic 15.0%
!! GATAAACAAAATTAACATTT+GGG - Chr8:56500704-56500723 None:intergenic 15.0%
!! TAAACTTAATATCTTAAAGT+TGG + Chr8:56501863-56501882 MsG0880045256.01.T01:intron 15.0%
!! TGATAAACAAAATTAACATT+TGG - Chr8:56500705-56500724 None:intergenic 15.0%
!! AAATAATGCTCAAAAGTTAT+TGG - Chr8:56500736-56500755 None:intergenic 20.0%
!! AATAATGCTCAAAAGTTATT+GGG - Chr8:56500735-56500754 None:intergenic 20.0%
!! AATCTCATTATTTAGATGTT+TGG + Chr8:56502073-56502092 MsG0880045256.01.T01:intron 20.0%
!! AATGTAGATGCAAAAAAAAT+TGG - Chr8:56502553-56502572 None:intergenic 20.0%
!! AGCATTATTTCAACTATTAA+GGG + Chr8:56500746-56500765 MsG0880045256.01.T01:intron 20.0%
!! AGTGTAAATATTATTCATCA+TGG - Chr8:56501327-56501346 None:intergenic 20.0%
!! ATTATGTTCAATAACATGTT+TGG + Chr8:56502947-56502966 MsG0880045256.01.T01:three_prime_UTR 20.0%
!!! AAAAATTTGCTGAGAAAAAT+TGG + Chr8:56499905-56499924 MsG0880045256.01.T01:CDS 20.0%
!!! AATACAAAGTTTTACCATAA+CGG + Chr8:56501459-56501478 MsG0880045256.01.T01:intron 20.0%
!!! AATTTTCCAAACAAATAGAA+GGG + Chr8:56500585-56500604 MsG0880045256.01.T01:intron 20.0%
!!! CAAATCACGTAATTTTATAA+GGG - Chr8:56499504-56499523 None:intergenic 20.0%
!!! GATTTTACTAGTTTGAATTT+GGG + Chr8:56501250-56501269 MsG0880045256.01.T01:intron 20.0%
!!! GTATTGATTGATAATGTTAT+TGG + Chr8:56503026-56503045 MsG0880045256.01.T01:three_prime_UTR 20.0%
!!! TAATTTTCCAAACAAATAGA+AGG + Chr8:56500584-56500603 MsG0880045256.01.T01:intron 20.0%
!!! TATTTTGTTGTTATTGTGAT+AGG + Chr8:56499823-56499842 MsG0880045256.01.T01:intron 20.0%
!!! TGATTTTACTAGTTTGAATT+TGG + Chr8:56501249-56501268 MsG0880045256.01.T01:intron 20.0%
!!! TTTTAGTTGATTTTTGAAAC+TGG + Chr8:56501167-56501186 MsG0880045256.01.T01:intron 20.0%
! AAAAGAATATACTTCTCCTA+AGG - Chr8:56500625-56500644 None:intergenic 25.0%
! AAACAGTCTGATTGAAAATT+TGG + Chr8:56502259-56502278 MsG0880045256.01.T01:intron 25.0%
! AATAAAGAATCTGTCAATTG+AGG - Chr8:56501555-56501574 None:intergenic 25.0%
! ACAAAGATATACATGCTTAT+TGG + Chr8:56500842-56500861 MsG0880045256.01.T01:intron 25.0%
! ACAAATGTCTACTTTATATC+TGG + Chr8:56502583-56502602 MsG0880045256.01.T01:intron 25.0%
! ATTCAAACAATCATTAGTTG+AGG - Chr8:56501392-56501411 None:intergenic 25.0%
! ATTTATAACCAACACAAGAT+GGG - Chr8:56501948-56501967 None:intergenic 25.0%
! CCTTATAAAATTACGTGATT+TGG + Chr8:56499502-56499521 MsG0880045256.01.T01:five_prime_UTR 25.0%
! CTATTAGATATTCTCAATGA+AGG - Chr8:56500490-56500509 None:intergenic 25.0%
! GAGCATTATTTCAACTATTA+AGG + Chr8:56500745-56500764 MsG0880045256.01.T01:intron 25.0%
! GATAGAAAAGAAATAATACC+AGG - Chr8:56500026-56500045 None:intergenic 25.0%
! GTAATTATATATGTCAGTGT+CGG - Chr8:56500272-56500291 None:intergenic 25.0%
! TATTTATAACCAACACAAGA+TGG - Chr8:56501949-56501968 None:intergenic 25.0%
! TCAAATATGGAAACTCTAAA+AGG + Chr8:56500551-56500570 MsG0880045256.01.T01:intron 25.0%
! TCTATCAGATAACTTCAAAA+CGG + Chr8:56499641-56499660 MsG0880045256.01.T01:five_prime_UTR 25.0%
! TGAAAACATTAATCTTCACA+TGG - Chr8:56501354-56501373 None:intergenic 25.0%
! TTATTGGAATGTGTTTATAC+TGG + Chr8:56503042-56503061 MsG0880045256.01.T01:three_prime_UTR 25.0%
!! AATGTTTTCACTTTCCTATA+TGG + Chr8:56501364-56501383 MsG0880045256.01.T01:intron 25.0%
!! AATTTTCAATCAGACTGTTT+AGG - Chr8:56502259-56502278 None:intergenic 25.0%
!! ATTATTTAGATGTTTGGTGA+TGG + Chr8:56502079-56502098 MsG0880045256.01.T01:intron 25.0%
!! CAAATATGGAAACTCTAAAA+GGG + Chr8:56500552-56500571 MsG0880045256.01.T01:intron 25.0%
!! CCAAATCACGTAATTTTATA+AGG - Chr8:56499505-56499524 None:intergenic 25.0%
!! TCGAATGTAACTATATGTTT+TGG + Chr8:56500140-56500159 MsG0880045256.01.T01:intron 25.0%
!! TTGTTTAGTTCATAGATTCT+TGG + Chr8:56501585-56501604 MsG0880045256.01.T01:intron 25.0%
!!! TTTTATTTCTCTGTTATTGC+AGG + Chr8:56501073-56501092 MsG0880045256.01.T01:intron 25.0%
AAAAATTGGCAGCAAAAACA+AGG - Chr8:56502539-56502558 None:intergenic 30.0%
AAAATTTGGTCCAATTGTCT+GGG + Chr8:56502273-56502292 MsG0880045256.01.T01:intron 30.0%
AAGAATAATTACGAAGTTGC+CGG - Chr8:56499711-56499730 None:intergenic 30.0%
AAGTTATCTGATAGAAGAAG+AGG - Chr8:56499636-56499655 None:intergenic 30.0%
AATATACTTCTCCTAAGGTT+TGG - Chr8:56500620-56500639 None:intergenic 30.0%
ACTGTAAGCTACTATGTTTA+AGG + Chr8:56501212-56501231 MsG0880045256.01.T01:intron 30.0%
AGAGTTTCCATATTTGATGA+GGG - Chr8:56500548-56500567 None:intergenic 30.0%
AGATAACAGAGTAAGTTAAG+AGG - Chr8:56499755-56499774 None:intergenic 30.0%
AGGAAACCAAAACCAAATTA+GGG - Chr8:56500882-56500901 None:intergenic 30.0%
ATAGTACCAACTTCCTAATA+AGG + Chr8:56500506-56500525 MsG0880045256.01.T01:intron 30.0%
ATTTGATGAGGGGATTTAAA+GGG - Chr8:56500537-56500556 None:intergenic 30.0%
CGATGAGAAAATTAGTAAGA+TGG + Chr8:56499858-56499877 MsG0880045256.01.T01:exon 30.0%
CTGCAGCAAAACAATAATAA+TGG - Chr8:56502808-56502827 None:intergenic 30.0%
GAATCAAGGTAAGCAAATAT+TGG - Chr8:56499931-56499950 None:intergenic 30.0%
GATATACATGCTTATTGGAA+TGG + Chr8:56500847-56500866 MsG0880045256.01.T01:intron 30.0%
GCTCTAATGTGTTTATGATT+GGG + Chr8:56501004-56501023 MsG0880045256.01.T01:intron 30.0%
TAAAATCCCTTCTATTGCTA+TGG - Chr8:56502620-56502639 None:intergenic 30.0%
TACACTTTCTTGCTTAATGA+TGG - Chr8:56501111-56501130 None:intergenic 30.0%
TAGAGTTTCCATATTTGATG+AGG - Chr8:56500549-56500568 None:intergenic 30.0%
TATTTGATGAGGGGATTTAA+AGG - Chr8:56500538-56500557 None:intergenic 30.0%
TCAAAACAAGTAAAGTTGCA+AGG - Chr8:56501979-56501998 None:intergenic 30.0%
TGAGAAAATTAGTAAGATGG+TGG + Chr8:56499861-56499880 MsG0880045256.01.T01:exon 30.0%
TGATGTTGATATTGAGCTAA+AGG + Chr8:56502382-56502401 MsG0880045256.01.T01:intron 30.0%
TTAAACATAGTAGCTTACAG+TGG - Chr8:56501213-56501232 None:intergenic 30.0%
TTAAATCCCCTCATCAAATA+TGG + Chr8:56500538-56500557 MsG0880045256.01.T01:intron 30.0%
TTAAGGAACTATGAATGAGA+AGG + Chr8:56501285-56501304 MsG0880045256.01.T01:intron 30.0%
TTGGATCTAACATACAAAGT+TGG + Chr8:56502231-56502250 MsG0880045256.01.T01:intron 30.0%
TTTCATCCATAGCAATAGAA+GGG + Chr8:56502611-56502630 MsG0880045256.01.T01:intron 30.0%
! AAGCTACTATGTTTAAGGTA+GGG + Chr8:56501217-56501236 MsG0880045256.01.T01:intron 30.0%
! AATTTTCTCATCGTGTTCTT+TGG - Chr8:56499851-56499870 None:intergenic 30.0%
! ACCACAATTTAGAACTATGT+TGG - Chr8:56501422-56501441 None:intergenic 30.0%
! CATGTTCTGACTTTGTATTT+TGG + Chr8:56502212-56502231 MsG0880045256.01.T01:intron 30.0%
! TAAGCTACTATGTTTAAGGT+AGG + Chr8:56501216-56501235 MsG0880045256.01.T01:intron 30.0%
! TACTAGTTTGAATTTGGGAT+AGG + Chr8:56501255-56501274 MsG0880045256.01.T01:intron 30.0%
! TTAATTTGACGAAATACCTG+TGG - Chr8:56501828-56501847 None:intergenic 30.0%
!! ACCAACATAGTTCTAAATTG+TGG + Chr8:56501418-56501437 MsG0880045256.01.T01:intron 30.0%
!! CATCCATTTTTATTAAGCCA+TGG + Chr8:56500423-56500442 MsG0880045256.01.T01:intron 30.0%
!! CATTATTATTGTTTTGCTGC+AGG + Chr8:56502806-56502825 MsG0880045256.01.T01:intron 30.0%
!! CGTGATTTGGTCAAATAATT+TGG + Chr8:56499515-56499534 MsG0880045256.01.T01:five_prime_UTR 30.0%
!! GGTTCTTGAAGTCATTTTAT+TGG + Chr8:56500665-56500684 MsG0880045256.01.T01:intron 30.0%
!! TCAAAGGTGTCATTGAATAA+AGG + Chr8:56502884-56502903 MsG0880045256.01.T01:three_prime_UTR 30.0%
!! TTAAAGGGTACTTCCTTATT+AGG - Chr8:56500522-56500541 None:intergenic 30.0%
!! TTTGAATTTGGGATAGGTTT+TGG + Chr8:56501261-56501280 MsG0880045256.01.T01:intron 30.0%
!! TTTTCACTTGTTACAGGTTT+TGG + Chr8:56501628-56501647 MsG0880045256.01.T01:intron 30.0%
!!! ATTCTTGTGCTGATTTTACA+TGG + Chr8:56502730-56502749 MsG0880045256.01.T01:intron 30.0%
!!! TAGTTGATTTTTGAAACTGG+TGG + Chr8:56501170-56501189 MsG0880045256.01.T01:intron 30.0%
AAATTTGGTCCAATTGTCTG+GGG + Chr8:56502274-56502293 MsG0880045256.01.T01:intron 35.0%
AACCATTAACAAGATCAACG+AGG - Chr8:56499673-56499692 None:intergenic 35.0%
AACTCCAAACCAAAACAACA+TGG + Chr8:56499548-56499567 MsG0880045256.01.T01:five_prime_UTR 35.0%
AAGGAAACTTCGTTAAGTGT+TGG + Chr8:56502903-56502922 MsG0880045256.01.T01:three_prime_UTR 35.0%
AATAAGACATGAGGAGGATA+AGG - Chr8:56499979-56499998 None:intergenic 35.0%
AATGAAATGAAGATCTCCTC+TGG + Chr8:56500905-56500924 MsG0880045256.01.T01:intron 35.0%
ACATGTCCCTTCTATTTGTT+TGG - Chr8:56500594-56500613 None:intergenic 35.0%
ACTCCAAACCAAAACAACAT+GGG + Chr8:56499549-56499568 MsG0880045256.01.T01:five_prime_UTR 35.0%
ATCATAAGTAGCACAAGCAT+GGG - Chr8:56501761-56501780 None:intergenic 35.0%
CTTTCATCCATAGCAATAGA+AGG + Chr8:56502610-56502629 MsG0880045256.01.T01:intron 35.0%
GAAAATTTGGTCCAATTGTC+TGG + Chr8:56502272-56502291 MsG0880045256.01.T01:intron 35.0%
GAGATCTTCATTTCATTCAG+AGG - Chr8:56500902-56500921 None:intergenic 35.0%
GAGGAAACCAAAACCAAATT+AGG - Chr8:56500883-56500902 None:intergenic 35.0%
GAGTTTCCATATTTGATGAG+GGG - Chr8:56500547-56500566 None:intergenic 35.0%
GGTTGGATCAAGATTTACAT+GGG + Chr8:56502354-56502373 MsG0880045256.01.T01:intron 35.0%
GTACTTCCTTATTAGGAAGT+TGG - Chr8:56500515-56500534 None:intergenic 35.0%
TATCAGGATGATGAGAATCA+AGG - Chr8:56499945-56499964 None:intergenic 35.0%
TCACAGATTCACAATTCACA+TGG - Chr8:56502693-56502712 None:intergenic 35.0%
TGATGAAAGCAAATTAGTCC+TGG + Chr8:56500005-56500024 MsG0880045256.01.T01:CDS 35.0%
TGGAATGTGTTTATACTGGT+TGG + Chr8:56503046-56503065 MsG0880045256.01.T01:three_prime_UTR 35.0%
TTATCCTCCTCATGTCTTAT+TGG + Chr8:56499978-56499997 MsG0880045256.01.T01:CDS 35.0%
! ACTGTATGATAACGAACACT+TGG + Chr8:56502482-56502501 MsG0880045256.01.T01:intron 35.0%
! ATCCAATCTCTCTGAGAATT+GGG - Chr8:56502321-56502340 None:intergenic 35.0%
! GGCTCTAATGTGTTTATGAT+TGG + Chr8:56501003-56501022 MsG0880045256.01.T01:intron 35.0%
! TATCCTCCTCATGTCTTATT+GGG + Chr8:56499979-56499998 MsG0880045256.01.T01:CDS 35.0%
!! AGGACTAATTTGCTTTCATC+AGG - Chr8:56500006-56500025 None:intergenic 35.0%
!! ATTGGTTCGTATGAGAAAGA+TGG + Chr8:56500982-56501001 MsG0880045256.01.T01:intron 35.0%
!! CTATGTTTAAGGTAGGGTTT+TGG + Chr8:56501223-56501242 MsG0880045256.01.T01:intron 35.0%
!! TTTCTGCCCTAATTTGGTTT+TGG + Chr8:56500873-56500892 MsG0880045256.01.T01:intron 35.0%
!!! AGAAGAGGTTGTTGTTTTAC+AGG - Chr8:56499621-56499640 None:intergenic 35.0%
!!! GAAGAGGTTGTTGTTTTACA+GGG - Chr8:56499620-56499639 None:intergenic 35.0%
!!! TGTTACAGGTTTTGGTTTGT+GGG + Chr8:56501636-56501655 MsG0880045256.01.T01:intron 35.0%
!!! TTGGGATAGGTTTTGGTTTA+AGG + Chr8:56501268-56501287 MsG0880045256.01.T01:intron 35.0%
!!! TTGTTACAGGTTTTGGTTTG+TGG + Chr8:56501635-56501654 MsG0880045256.01.T01:intron 35.0%
AATTCCATGCGAGTGACATA+AGG - Chr8:56502437-56502456 None:intergenic 40.0%
AATTTGGTCCAATTGTCTGG+GGG + Chr8:56502275-56502294 MsG0880045256.01.T01:intron 40.0%
ACAAAATGACATAGCCGACA+AGG + Chr8:56500449-56500468 MsG0880045256.01.T01:intron 40.0%
ACAAGGTCTAGATCACAGTT+TGG - Chr8:56502522-56502541 None:intergenic 40.0%
ACTGCAAAATGAAGTCAGAG+AGG + Chr8:56501998-56502017 MsG0880045256.01.T01:intron 40.0%
ACTTTACATAGCTGTGGAAG+GGG + Chr8:56502848-56502867 MsG0880045256.01.T01:CDS 40.0%
ATGACACCTTTGATGCTATC+TGG - Chr8:56502877-56502896 None:intergenic 40.0%
ATGATCCAAATGCAACACTC+AGG + Chr8:56500935-56500954 MsG0880045256.01.T01:intron 40.0%
CAAAATGACATAGCCGACAA+GGG + Chr8:56500450-56500469 MsG0880045256.01.T01:intron 40.0%
CACTTTACATAGCTGTGGAA+GGG + Chr8:56502847-56502866 MsG0880045256.01.T01:CDS 40.0%
CATTAGTTGAGGAGCCATAT+AGG - Chr8:56501381-56501400 None:intergenic 40.0%
CGGTTGGATCAAGATTTACA+TGG + Chr8:56502353-56502372 MsG0880045256.01.T01:intron 40.0%
CTTTGTATTGCAGTCGCAAT+TGG - Chr8:56501448-56501467 None:intergenic 40.0%
GAATCTGTCAATTGAGGTTG+TGG - Chr8:56501549-56501568 None:intergenic 40.0%
GATCATAAGTAGCACAAGCA+TGG - Chr8:56501762-56501781 None:intergenic 40.0%
GATTCTTGGTTGAGATTCTG+AGG + Chr8:56501599-56501618 MsG0880045256.01.T01:intron 40.0%
GGACATGTAAACCAAACCTT+AGG + Chr8:56500606-56500625 MsG0880045256.01.T01:intron 40.0%
GGGCCATGGCTTAATAAAAA+TGG - Chr8:56500429-56500448 None:intergenic 40.0%
GTCCTCGTTGATCTTGTTAA+TGG + Chr8:56499668-56499687 MsG0880045256.01.T01:five_prime_UTR 40.0%
TAACCAACACAAGATGGGAA+AGG - Chr8:56501943-56501962 None:intergenic 40.0%
TAAGGAGGTTCAGGAATATC+AGG - Chr8:56499961-56499980 None:intergenic 40.0%
TAATCACACAGTCACCAATC+TGG + Chr8:56502159-56502178 MsG0880045256.01.T01:intron 40.0%
TATGAAGCACAGACACTACT+TGG + Chr8:56500217-56500236 MsG0880045256.01.T01:intron 40.0%
TGACACCTTTGATGCTATCT+GGG - Chr8:56502876-56502895 None:intergenic 40.0%
TGGTGTGCATTAAAAGTCCT+TGG + Chr8:56502967-56502986 MsG0880045256.01.T01:three_prime_UTR 40.0%
TGTGATCCAACATACCAGAT+TGG - Chr8:56502176-56502195 None:intergenic 40.0%
TGTTGCACTTTACATAGCTG+TGG + Chr8:56502842-56502861 MsG0880045256.01.T01:CDS 40.0%
TTCCCAATTCTCAGAGAGAT+TGG + Chr8:56502316-56502335 MsG0880045256.01.T01:intron 40.0%
TTGACGAAATACCTGTGGAT+GGG - Chr8:56501823-56501842 None:intergenic 40.0%
TTTGACGAAATACCTGTGGA+TGG - Chr8:56501824-56501843 None:intergenic 40.0%
! CTACTTGGATTAGGTTGTCT+TGG + Chr8:56500232-56500251 MsG0880045256.01.T01:intron 40.0%
! GATCACAGTTTGGAACTAAG+AGG - Chr8:56502512-56502531 None:intergenic 40.0%
! GATCCAATCTCTCTGAGAAT+TGG - Chr8:56502322-56502341 None:intergenic 40.0%
! GTAGAGACACTTTTCATCCA+AGG - Chr8:56502987-56503006 None:intergenic 40.0%
! TCACATTTTCCAGAGGAGAA+AGG - Chr8:56501729-56501748 None:intergenic 40.0%
! TGGTGTTTTCTGCCCTAATT+TGG + Chr8:56500867-56500886 MsG0880045256.01.T01:intron 40.0%
!! ATATATGTCAGTGTCGGTGT+CGG - Chr8:56500266-56500285 None:intergenic 40.0%
!! ATTCAGAGCCCATGTTGTTT+TGG - Chr8:56499560-56499579 None:intergenic 40.0%
!! CATTTCTGAAGTACCCTTGT+CGG - Chr8:56500466-56500485 None:intergenic 40.0%
!! GACTGCATTGATGGATTCAT+TGG + Chr8:56500964-56500983 MsG0880045256.01.T01:intron 40.0%
!!! GTTACAGGTTTTGGTTTGTG+GGG + Chr8:56501637-56501656 MsG0880045256.01.T01:intron 40.0%
!!! TGCTGGTTTTCACTTGTTAC+AGG + Chr8:56501622-56501641 MsG0880045256.01.T01:intron 40.0%
!!! TGTCGGCTATGTCATTTTGT+GGG - Chr8:56500449-56500468 None:intergenic 40.0%
!!! TTGTCGGCTATGTCATTTTG+TGG - Chr8:56500450-56500469 None:intergenic 40.0%
AAATGAAGATCTCCTCTGGC+TGG + Chr8:56500909-56500928 MsG0880045256.01.T01:intron 45.0%
AAGACATGAGGAGGATAAGG+AGG - Chr8:56499976-56499995 None:intergenic 45.0%
AGCCAAAGCAAGCAAAGATC+TGG + Chr8:56501794-56501813 MsG0880045256.01.T01:intron 45.0%
AGGAGCAAAGACTGCATTGA+TGG + Chr8:56500955-56500974 MsG0880045256.01.T01:intron 45.0%
ATAAGTAGCACAAGCATGGG+AGG - Chr8:56501758-56501777 None:intergenic 45.0%
ATATTGCAGACGCAGCAATG+CGG - Chr8:56501502-56501521 None:intergenic 45.0%
ATTTGGTCCAATTGTCTGGG+GGG + Chr8:56502276-56502295 MsG0880045256.01.T01:intron 45.0%
CACCAGATCTTTGCTTGCTT+TGG - Chr8:56501799-56501818 None:intergenic 45.0%
CAGAGCTTCATAGATCCGAA+GGG + Chr8:56500355-56500374 MsG0880045256.01.T01:intron 45.0%
CAGTCACCAATCTGGTATGT+TGG + Chr8:56502167-56502186 MsG0880045256.01.T01:intron 45.0%
CTCTGAATCTCAATCTCCGA+CGG + Chr8:56499572-56499591 MsG0880045256.01.T01:five_prime_UTR 45.0%
GCACAGACACTACTTGGATT+AGG + Chr8:56500223-56500242 MsG0880045256.01.T01:intron 45.0%
GCACTTTACATAGCTGTGGA+AGG + Chr8:56502846-56502865 MsG0880045256.01.T01:CDS 45.0%
GTCAATTGAGGTTGTGGTCA+CGG - Chr8:56501543-56501562 None:intergenic 45.0%
GTGTCTGTGCTTCATAGCTT+TGG - Chr8:56500213-56500232 None:intergenic 45.0%
GTTAATGGTTTCTGCACCGT+TGG + Chr8:56499683-56499702 MsG0880045256.01.T01:five_prime_UTR 45.0%
TAAAGGCTCTTTGCAGTGGA+AGG + Chr8:56502399-56502418 MsG0880045256.01.T01:intron 45.0%
TCAGAGCTTCATAGATCCGA+AGG + Chr8:56500354-56500373 MsG0880045256.01.T01:intron 45.0%
TCAGGACCCAATAAGACATG+AGG - Chr8:56499988-56500007 None:intergenic 45.0%
TCTCGCAGACAAAACTGAAC+AGG - Chr8:56501696-56501715 None:intergenic 45.0%
TGGGAATCATGCATTTGACG+TGG - Chr8:56502302-56502321 None:intergenic 45.0%
TGTATTGCAGTCGCAATTGG+CGG - Chr8:56501445-56501464 None:intergenic 45.0%
TTGAAGACGTGTTCACTGTC+CGG - Chr8:56500189-56500208 None:intergenic 45.0%
! GGATCTATGAAGCTCTGACA+CGG - Chr8:56500352-56500371 None:intergenic 45.0%
! GTGTTACTATCAAACACCGC+CGG + Chr8:56500167-56500186 MsG0880045256.01.T01:intron 45.0%
! GTTTTGTCTGCGAGAAATCG+TGG + Chr8:56501701-56501720 MsG0880045256.01.T01:intron 45.0%
! TCCTCTGGAAAATGTGAGTG+TGG + Chr8:56501732-56501751 MsG0880045256.01.T01:intron 45.0%
! TTGCTCCTGAGTGTTGCATT+TGG - Chr8:56500943-56500962 None:intergenic 45.0%
! TTGGATCATTTTCCAGCCAG+AGG - Chr8:56500924-56500943 None:intergenic 45.0%
!! GCTTTAAGACGCACTGTAAC+TGG + Chr8:56502031-56502050 MsG0880045256.01.T01:intron 45.0%
!!! CTATGTCATTTTGTGGGCCA+TGG - Chr8:56500443-56500462 None:intergenic 45.0%
!!! GAGCCCATGTTGTTTTGGTT+TGG - Chr8:56499555-56499574 None:intergenic 45.0%
!! ATAAATCAAATAATATTATA+TGG + Chr8:56500054-56500073 MsG0880045256.01.T01:intron 5.0%
ATCGTGGTTCCTTTCTCCTC+TGG + Chr8:56501717-56501736 MsG0880045256.01.T01:intron 50.0%
CAAGCGTGCAATTGCCGTTA+TGG - Chr8:56501476-56501495 None:intergenic 50.0%
CCATGCGAGTGACATAAGGA+AGG - Chr8:56502433-56502452 None:intergenic 50.0%
CCTTCCTTATGTCACTCGCA+TGG + Chr8:56502430-56502449 MsG0880045256.01.T01:intron 50.0%
CTGCCTTTCCCATCTTGTGT+TGG + Chr8:56501937-56501956 MsG0880045256.01.T01:intron 50.0%
GAGCTAAAGGCTCTTTGCAG+TGG + Chr8:56502395-56502414 MsG0880045256.01.T01:intron 50.0%
GATTGGATCGCTGCAGAAAG+CGG + Chr8:56502333-56502352 MsG0880045256.01.T01:intron 50.0%
GCTTCATAGATCCGAAGGGT+TGG + Chr8:56500359-56500378 MsG0880045256.01.T01:intron 50.0%
GGACCCAATAAGACATGAGG+AGG - Chr8:56499985-56500004 None:intergenic 50.0%
TACGAAGTTGCCGGATCCAA+CGG - Chr8:56499702-56499721 None:intergenic 50.0%
TCCTTTACAAGCTCCACCGT+CGG - Chr8:56499591-56499610 None:intergenic 50.0%
TGAATCTCAATCTCCGACGG+TGG + Chr8:56499575-56499594 MsG0880045256.01.T01:five_prime_UTR 50.0%
TGAGGAGGATAAGGAGGTTC+AGG - Chr8:56499970-56499989 None:intergenic 50.0%
TGCTAGGTGCTAGTGCTTCA+TGG + Chr8:56500382-56500401 MsG0880045256.01.T01:intron 50.0%
! ATGCACTGATATCTGCGTGC+TGG + Chr8:56501662-56501681 MsG0880045256.01.T01:intron 50.0%
! GCCACACTCACATTTTCCAG+AGG - Chr8:56501736-56501755 None:intergenic 50.0%
! TGCACTGATATCTGCGTGCT+GGG + Chr8:56501663-56501682 MsG0880045256.01.T01:intron 50.0%
!! TGGTTGAGATTCTGAGGTGC+TGG + Chr8:56501605-56501624 MsG0880045256.01.T01:intron 50.0%
AAGACGTGTTCACTGTCCGG+CGG - Chr8:56500186-56500205 None:intergenic 55.0%
AGATCTGGTGTCCCATCCAC+AGG + Chr8:56501809-56501828 MsG0880045256.01.T01:intron 55.0%
AGCACCTAGCACCAACCCTT+CGG - Chr8:56500373-56500392 None:intergenic 55.0%
GGGAGCCCAGATAGCATCAA+AGG + Chr8:56502868-56502887 MsG0880045256.01.T01:exon 55.0%
GGTTTCTGCACCGTTGGATC+CGG + Chr8:56499689-56499708 MsG0880045256.01.T01:five_prime_UTR 55.0%
TCCGACGGTGGAGCTTGTAA+AGG + Chr8:56499587-56499606 MsG0880045256.01.T01:five_prime_UTR 55.0%
! GCACTGATATCTGCGTGCTG+GGG + Chr8:56501664-56501683 MsG0880045256.01.T01:intron 55.0%
! TGAAGCTCTGACACGGACAC+TGG - Chr8:56500345-56500364 None:intergenic 55.0%
!! AGATCCGAAGGGTTGGTGCT+AGG + Chr8:56500366-56500385 MsG0880045256.01.T01:intron 55.0%
GGATCGCTGCAGAAAGCGGT+TGG + Chr8:56502337-56502356 MsG0880045256.01.T01:intron 60.0%
GACGTGGCCCCCCAGACAAT+TGG - Chr8:56502286-56502305 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 56499488 56503166 56499488 ID=MsG0880045256.01;Name=MsG0880045256.01
Chr8 mRNA 56499488 56503166 56499488 ID=MsG0880045256.01.T01;Parent=MsG0880045256.01;Name=MsG0880045256.01.T01;_AED=0.20;_eAED=0.20;_QI=263|0.5|1|1|0|0|3|285|67
Chr8 exon 56499488 56499718 56499488 ID=MsG0880045256.01.T01:exon:24269;Parent=MsG0880045256.01.T01
Chr8 exon 56499845 56500026 56499845 ID=MsG0880045256.01.T01:exon:24270;Parent=MsG0880045256.01.T01
Chr8 exon 56502828 56503166 56502828 ID=MsG0880045256.01.T01:exon:24271;Parent=MsG0880045256.01.T01
Chr8 five_prime_UTR 56499488 56499718 56499488 ID=MsG0880045256.01.T01:five_prime_utr;Parent=MsG0880045256.01.T01
Chr8 five_prime_UTR 56499845 56499876 56499845 ID=MsG0880045256.01.T01:five_prime_utr;Parent=MsG0880045256.01.T01
Chr8 CDS 56499877 56500026 56499877 ID=MsG0880045256.01.T01:cds;Parent=MsG0880045256.01.T01
Chr8 CDS 56502828 56502881 56502828 ID=MsG0880045256.01.T01:cds;Parent=MsG0880045256.01.T01
Chr8 three_prime_UTR 56502882 56503166 56502882 ID=MsG0880045256.01.T01:three_prime_utr;Parent=MsG0880045256.01.T01
Gene Sequence

>MsG0880045256.01.T01

ATGGTGGAAGAATCAGTGAAGCTATCAAAAAAATTTGCTGAGAAAAATTGGCCAATATTTGCTTACCTTGATTCTCATCATCCTGATATTCCTGAACCTCCTTATCCTCCTCATGTCTTATTGGGTCCTGATGAAAGCAAATTAGTCCTGGAGCTAATGCATCATGTTGCACTTTACATAGCTGTGGAAGGGGAGCCCAGATAG

Protein sequence

>MsG0880045256.01.T01

MVEESVKLSKKFAEKNWPIFAYLDSHHPDIPEPPYPPHVLLGPDESKLVLELMHHVALYIAVEGEPR*