AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001710.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001710.01.T01 MTR_1g041435 69.853 272 56 5 25 275 58 324 3.81e-127 364
MsG0180001710.01.T01 MTR_1g041435 83.117 77 12 1 30 106 5 80 8.02e-32 120
MsG0180001710.01.T01 MTR_1g041435 69.853 272 56 5 25 275 33 299 9.16e-127 362
MsG0180001710.01.T01 MTR_1g041435 88.571 35 4 0 73 107 22 56 6.08e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001710.01.T01 AT1G04190 69.430 193 57 1 83 275 138 328 1.88e-96 286
MsG0180001710.01.T01 AT1G04190 60.494 81 31 1 27 107 6 85 8.71e-20 87.8

Find 59 sgRNAs with CRISPR-Local

Find 469 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCAGGGATCCAGAAATTT+TGG 0.181636 1:-25724573 MsG0180001710.01.T01:intron
TAATGTACTTGACTGATATT+TGG 0.182612 1:-25724494 MsG0180001710.01.T01:three_prime_UTR
AAACAGCTGCTGTGTGTTTC+TGG 0.204324 1:+25725668 None:intergenic
TGATTGCTCTTGATCTATTC+TGG 0.236101 1:-25724300 MsG0180001710.01.T01:three_prime_UTR
GCGCCAACGTCCAAAATTTC+TGG 0.288254 1:+25724563 None:intergenic
GTGATTGATATTAAATCTTC+TGG 0.293147 1:-25724194 MsG0180001710.01.T01:three_prime_UTR
ACCTTATCAATATTCACAAT+TGG 0.335540 1:+25725891 None:intergenic
CCTTATCAATATTCACAATT+GGG 0.352170 1:+25725892 None:intergenic
GCTTCCATTTCCTTGATCCT+TGG 0.353756 1:+25724811 None:intergenic
CCCTTGCAGTCTGAAAAGTA+TGG 0.357742 1:-25726059 MsG0180001710.01.T01:intron
AGTTTACTTTCTTCCTGATA+AGG 0.380004 1:-25725940 MsG0180001710.01.T01:CDS
AGATGTTGTATCTGTATTTG+TGG 0.390621 1:-25724221 MsG0180001710.01.T01:three_prime_UTR
TCAGTCAAGTACATTAAGAT+TGG 0.390706 1:+25724501 None:intergenic
AGAAATTATCCAAGCTTTCA+AGG 0.396625 1:-25724355 MsG0180001710.01.T01:three_prime_UTR
TTCAAGGGCAGCCTGCTTAG+TGG 0.397167 1:-25725612 MsG0180001710.01.T01:CDS
TATTCCCAGTTCAAATGAAA+AGG 0.399079 1:-25724727 MsG0180001710.01.T01:CDS
TCTTGATCTATTCTGGAAAC+TGG 0.399277 1:-25724293 MsG0180001710.01.T01:three_prime_UTR
TGCTGCAGCATTGCTACAAT+TGG 0.401785 1:-25728584 MsG0180001710.01.T01:CDS
CAATTCTGAGATATCTTTGA+AGG 0.417985 1:-25730483 MsG0180001710.01.T01:CDS
AACAGTGATAAACAAACTAA+TGG 0.429194 1:+25724270 None:intergenic
TCGGCATACTGCCTAAGAAA+TGG 0.431760 1:+25725644 None:intergenic
AATGCAACTCCTTGAAAGCT+TGG 0.432933 1:+25724346 None:intergenic
GAGATATCTTTGAAGGATCA+AGG 0.445065 1:-25730476 MsG0180001710.01.T01:CDS
CGTGTATCATGGAAAGAGTA+TGG 0.453058 1:-25732048 None:intergenic
CCCAATTGTGAATATTGATA+AGG 0.468621 1:-25725892 MsG0180001710.01.T01:intron
TTTGGAATGTAAAATAATGC+TGG 0.470302 1:-25724411 MsG0180001710.01.T01:three_prime_UTR
AATTAAATTAAAACCCGAAT+GGG 0.475131 1:-25728524 MsG0180001710.01.T01:CDS
ATTCCCAGTTCAAATGAAAA+GGG 0.487057 1:-25724726 MsG0180001710.01.T01:CDS
TCTGGAAAGGCCAAGGATCA+AGG 0.487214 1:-25724821 MsG0180001710.01.T01:CDS
CTCCTTCCGTGCGAAAATTG+TGG 0.490264 1:-25724752 MsG0180001710.01.T01:CDS
AAGGCCAAGGATCAAGGAAA+TGG 0.491879 1:-25724815 MsG0180001710.01.T01:CDS
AGTATGGATCTGAAGAAAGC+TGG 0.495429 1:-25726043 MsG0180001710.01.T01:CDS
GCAGTACATTCAAGTGGGTC+TGG 0.498457 1:+25731998 None:intergenic
GTGTGTTTCTGGTGACTCAA+AGG 0.501172 1:+25725679 None:intergenic
ATTAAAACCCGAATGGGAAA+AGG 0.501785 1:-25728518 MsG0180001710.01.T01:intron
CAGTCAAGTACATTAAGATT+GGG 0.505176 1:+25724502 None:intergenic
TCTATACTCAAGCCATCAAA+AGG 0.507680 1:-25730409 MsG0180001710.01.T01:CDS
ACATTCAAGTGGGTCTGGCT+TGG 0.532430 1:+25732003 None:intergenic
TGGAAGCATGCACAGAATGA+TGG 0.537108 1:-25724795 MsG0180001710.01.T01:CDS
TGGAGACTGCTGTAAAATCA+TGG 0.542267 1:-25725989 MsG0180001710.01.T01:CDS
CTTATCAATATTCACAATTG+GGG 0.543694 1:+25725893 None:intergenic
CTCATTCCTCGTCGAGACCA+TGG 0.548485 1:-25726009 MsG0180001710.01.T01:CDS
TAGTTTGTTTATCACTGTTG+AGG 0.548826 1:-25724266 MsG0180001710.01.T01:three_prime_UTR
CCAAAGAGACAACAAAACAT+AGG 0.562668 1:+25724429 None:intergenic
AAACATCATTGCTTATCCAC+AGG 0.566500 1:-25725582 MsG0180001710.01.T01:intron
TGCCAGGTCTGGAAAGGCCA+AGG 0.570453 1:-25724828 MsG0180001710.01.T01:intron
CAATTAAATTAAAACCCGAA+TGG 0.579725 1:-25728525 MsG0180001710.01.T01:CDS
TATGTCTGCCAGGTCTGGAA+AGG 0.584237 1:-25724834 MsG0180001710.01.T01:intron
AAAAGGGACAGATACTGTGC+AGG 0.590409 1:-25724710 MsG0180001710.01.T01:intron
ATGGCATGAAACTTCTTCAG+TGG 0.598632 1:-25725970 MsG0180001710.01.T01:CDS
GAGGCAAGTTTGTAGACAGT+AGG 0.609601 1:-25724247 MsG0180001710.01.T01:three_prime_UTR
AAAACAAAGAAGATCATCGA+TGG 0.614515 1:-25730524 MsG0180001710.01.T01:intron
TCAAGTACATTAAGATTGGG+AGG 0.637826 1:+25724505 None:intergenic
TTATCAATATTCACAATTGG+GGG 0.644295 1:+25725894 None:intergenic
ATTTCTTAGGCAGTATGCCG+AGG 0.649476 1:-25725642 MsG0180001710.01.T01:CDS
CTTACCGCAGTACATTCAAG+TGG 0.661761 1:+25731992 None:intergenic
CAGTCTCCATGGTCTCGACG+AGG 0.701435 1:+25726003 None:intergenic
TTACCGCAGTACATTCAAGT+GGG 0.716844 1:+25731993 None:intergenic
AGACCCACTTGAATGTACTG+CGG 0.767918 1:-25731996 MsG0180001710.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAATTGTATTATAATG+TGG + Chr1:25729174-25729193 None:intergenic 10.0%
!! AATTAAAGATATGTATAAAT+AGG - Chr1:25730768-25730787 MsG0180001710.01.T01:intron 10.0%
!!! ATTGAAAAATGTATTTTTAA+GGG + Chr1:25727784-25727803 None:intergenic 10.0%
!! AAAAATTATTCAAAAACTAG+AGG + Chr1:25728603-25728622 None:intergenic 15.0%
!! AAGAAAAAAAGTAATTACTA+CGG - Chr1:25727235-25727254 MsG0180001710.01.T01:intron 15.0%
!! AATTAGAATGTTTCTTTAAA+AGG + Chr1:25729121-25729140 None:intergenic 15.0%
!! AATTTGAAAGAAAAAAGAAA+AGG + Chr1:25725884-25725903 None:intergenic 15.0%
!! ATTAAAGAAATTAACATAGA+AGG + Chr1:25728733-25728752 None:intergenic 15.0%
!! ATTAGTGTTTATTATAGTTT+CGG - Chr1:25726074-25726093 MsG0180001710.01.T01:intron 15.0%
!! ATTGACAATTATAATAATAG+TGG + Chr1:25727494-25727513 None:intergenic 15.0%
!! ATTTGAAAGAAAAAAGAAAA+GGG + Chr1:25725883-25725902 None:intergenic 15.0%
!! CGAATATTTATAAAAATGAT+AGG - Chr1:25731763-25731782 MsG0180001710.01.T01:intron 15.0%
!!! AAAAGAAAGTATAAATCAAA+AGG + Chr1:25730967-25730986 None:intergenic 15.0%
!!! ATTTATTCTATCTTTTCTTA+TGG - Chr1:25726282-25726301 MsG0180001710.01.T01:intron 15.0%
!!! ATTTTGAATCTTTTTTCATT+TGG - Chr1:25725901-25725920 MsG0180001710.01.T01:CDS 15.0%
!!! CATTGAAAAATGTATTTTTA+AGG + Chr1:25727785-25727804 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + Chr1:25725321-25725340 None:intergenic 15.0%
!!! TTATTTTAGACTATTGAATA+GGG + Chr1:25728670-25728689 None:intergenic 15.0%
!!! TTCAATAGTCTAAAATAAAA+CGG - Chr1:25728672-25728691 MsG0180001710.01.T01:intron 15.0%
!!! TTTATTTTAGACTATTGAAT+AGG + Chr1:25728671-25728690 None:intergenic 15.0%
!!! TTTTGAATCTTTTTTCATTT+GGG - Chr1:25725902-25725921 MsG0180001710.01.T01:CDS 15.0%
!! AAATTATCCTAATCAACTAT+TGG + Chr1:25725458-25725477 None:intergenic 20.0%
!! AATAGTTGATTAGGATAATT+TGG - Chr1:25725457-25725476 MsG0180001710.01.T01:intron 20.0%
!! AATTAAATTAAAACCCGAAT+GGG - Chr1:25727710-25727729 MsG0180001710.01.T01:intron 20.0%
!! AGCATAAGATATTTATGAAT+TGG + Chr1:25727592-25727611 None:intergenic 20.0%
!! AGTGGTAATCTTATATAATT+TGG + Chr1:25728960-25728979 None:intergenic 20.0%
!! ATAGCATTAATTGTTGAATT+TGG + Chr1:25729965-25729984 None:intergenic 20.0%
!! ATATAGGATATGATATGTTT+AGG + Chr1:25728877-25728896 None:intergenic 20.0%
!! ATATTGAAGAAGATAAAGAA+AGG + Chr1:25730393-25730412 None:intergenic 20.0%
!! ATTGTATTATAATGTGGATT+AGG + Chr1:25729168-25729187 None:intergenic 20.0%
!! CAATAACTAAAAAATTTAGC+AGG + Chr1:25728135-25728154 None:intergenic 20.0%
!! GAAAGGAATTTGAAAATTAT+AGG + Chr1:25730376-25730395 None:intergenic 20.0%
!! GCATAAGATATTTATGAATT+GGG + Chr1:25727591-25727610 None:intergenic 20.0%
!! GTGGTAATCTTATATAATTT+GGG + Chr1:25728959-25728978 None:intergenic 20.0%
!! TAAAAAGATTTAGTTACACA+TGG + Chr1:25725072-25725091 None:intergenic 20.0%
!! TAAAATCATAATACCATACA+GGG + Chr1:25730508-25730527 None:intergenic 20.0%
!! TAAAGATATGTATAAATAGG+AGG - Chr1:25730771-25730790 MsG0180001710.01.T01:intron 20.0%
!! TAGCATTAATTGTTGAATTT+GGG + Chr1:25729964-25729983 None:intergenic 20.0%
!! TCTTAGTTCATTAATTATGA+AGG - Chr1:25730687-25730706 MsG0180001710.01.T01:intron 20.0%
!! TTAAAATCATAATACCATAC+AGG + Chr1:25730509-25730528 None:intergenic 20.0%
!! TTATCATCAAAACTTAAGAT+GGG + Chr1:25725236-25725255 None:intergenic 20.0%
!! TTTATTTGTTCCTTAACTTT+GGG - Chr1:25730071-25730090 MsG0180001710.01.T01:intron 20.0%
!! TTTGTACTAAATACATATCT+CGG + Chr1:25728003-25728022 None:intergenic 20.0%
!!! AAAATTGATTTTGACATGTT+TGG - Chr1:25726599-25726618 MsG0180001710.01.T01:intron 20.0%
!!! AGAAAATTCATTTTATGTAC+TGG - Chr1:25727077-25727096 MsG0180001710.01.T01:intron 20.0%
!!! ATATTTTCCTTGATTTTCTA+GGG - Chr1:25725018-25725037 MsG0180001710.01.T01:intron 20.0%
!!! ATGATCTTCTTTGTTTTTTA+AGG + Chr1:25725707-25725726 None:intergenic 20.0%
!!! GAAAATTCATTTTATGTACT+GGG - Chr1:25727078-25727097 MsG0180001710.01.T01:intron 20.0%
!!! GTTCACTATAAAGTTTTATT+AGG - Chr1:25725172-25725191 MsG0180001710.01.T01:intron 20.0%
!!! GTTTTATTAGGAAATTCTTT+TGG - Chr1:25725184-25725203 MsG0180001710.01.T01:intron 20.0%
!!! TAAACCTCTATTATTTTTGT+CGG - Chr1:25725108-25725127 MsG0180001710.01.T01:intron 20.0%
!!! TATATTTTCCTTGATTTTCT+AGG - Chr1:25725017-25725036 MsG0180001710.01.T01:intron 20.0%
!!! TATTTTTTTAGCAAATTGAG+TGG - Chr1:25727516-25727535 MsG0180001710.01.T01:intron 20.0%
!!! TGTAATTTTATTCGTTTTGT+GGG - Chr1:25724861-25724880 MsG0180001710.01.T01:intron 20.0%
!!! TGTATTTTGAATGGAAATAA+TGG + Chr1:25731151-25731170 None:intergenic 20.0%
!!! TTTATTCTTTGCATTTTTTC+AGG + Chr1:25724336-25724355 None:intergenic 20.0%
!!! TTTTATTTGTTCCTTAACTT+TGG - Chr1:25730070-25730089 MsG0180001710.01.T01:intron 20.0%
! AAAAAAATAGTGAGAATCAG+AGG + Chr1:25731032-25731051 None:intergenic 25.0%
! AAAAAATAGTGAGAATCAGA+GGG + Chr1:25731031-25731050 None:intergenic 25.0%
! AAAACTACGGATAATCAATT+TGG + Chr1:25729068-25729087 None:intergenic 25.0%
! AAACAAACCAATAGTTGATT+AGG - Chr1:25725448-25725467 MsG0180001710.01.T01:intron 25.0%
! AAATAAGTGCATCCAAAAAA+GGG + Chr1:25731561-25731580 None:intergenic 25.0%
! AACAGTGATAAACAAACTAA+TGG + Chr1:25731967-25731986 None:intergenic 25.0%
! AAGAAAAAGAAGACATTGAT+AGG + Chr1:25728699-25728718 None:intergenic 25.0%
! AAGGTAAAGTGATTTATGAT+TGG + Chr1:25726758-25726777 None:intergenic 25.0%
! AAGTTATCATAGATAGCTTA+TGG + Chr1:25726226-25726245 None:intergenic 25.0%
! AATATGCCAAAAGAAAACAA+AGG - Chr1:25725609-25725628 MsG0180001710.01.T01:CDS 25.0%
! AATTACCAAACAAATAGCTT+AGG - Chr1:25729681-25729700 MsG0180001710.01.T01:intron 25.0%
! ACCTTATCAATATTCACAAT+TGG + Chr1:25730346-25730365 None:intergenic 25.0%
! AGCATTAATTGTTGAATTTG+GGG + Chr1:25729963-25729982 None:intergenic 25.0%
! AGCATTTATATGATAACACT+TGG - Chr1:25726320-25726339 MsG0180001710.01.T01:intron 25.0%
! ATAGGATAAAGAGTTAGTTA+GGG - Chr1:25730725-25730744 MsG0180001710.01.T01:intron 25.0%
! ATATCCGACAAAAATAATAG+AGG + Chr1:25725115-25725134 None:intergenic 25.0%
! ATATGCCAAAAGAAAACAAA+GGG - Chr1:25725610-25725629 MsG0180001710.01.T01:CDS 25.0%
! CAATTAAATTAAAACCCGAA+TGG - Chr1:25727709-25727728 MsG0180001710.01.T01:intron 25.0%
! CATTTATATGATAACACTTG+GGG - Chr1:25726322-25726341 MsG0180001710.01.T01:intron 25.0%
! CCAAGTACAAAATTCATAAA+AGG + Chr1:25729585-25729604 None:intergenic 25.0%
! CCTTATCAATATTCACAATT+GGG + Chr1:25730345-25730364 None:intergenic 25.0%
! CGTCATTTCTTAGAAAATAT+AGG + Chr1:25728893-25728912 None:intergenic 25.0%
! CTAAAATGCTATGTTTGTTT+CGG + Chr1:25724562-25724581 None:intergenic 25.0%
! CTAAATATACTTGCACATTT+GGG - Chr1:25730434-25730453 MsG0180001710.01.T01:CDS 25.0%
! CTTATAGCATAAGTAATGTT+TGG + Chr1:25726851-25726870 None:intergenic 25.0%
! CTTATCAATATTCACAATTG+GGG + Chr1:25730344-25730363 None:intergenic 25.0%
! CTTATCATCAAAACTTAAGA+TGG + Chr1:25725237-25725256 None:intergenic 25.0%
! GAATTTCTCGTTCAAAATTA+TGG - Chr1:25724952-25724971 MsG0180001710.01.T01:intron 25.0%
! GCATTTATATGATAACACTT+GGG - Chr1:25726321-25726340 MsG0180001710.01.T01:intron 25.0%
! GTGATTGATATTAAATCTTC+TGG - Chr1:25732040-25732059 MsG0180001710.01.T01:CDS 25.0%
! TAAAATGCTATGTTTGTTTC+GGG + Chr1:25724561-25724580 None:intergenic 25.0%
! TAAATAAGTGCATCCAAAAA+AGG + Chr1:25731562-25731581 None:intergenic 25.0%
! TAATGTACTTGACTGATATT+TGG - Chr1:25731740-25731759 MsG0180001710.01.T01:intron 25.0%
! TAGGGGAAATATTAGTTAAT+GGG - Chr1:25730743-25730762 MsG0180001710.01.T01:intron 25.0%
! TATAGGATAAAGAGTTAGTT+AGG - Chr1:25730724-25730743 MsG0180001710.01.T01:intron 25.0%
! TATATAAGATTACCACTATG+TGG - Chr1:25728963-25728982 MsG0180001710.01.T01:intron 25.0%
! TATTATTGATAAGCTTGTCA+AGG - Chr1:25726397-25726416 MsG0180001710.01.T01:intron 25.0%
! TATTCAAAAACTAGAGGTTT+CGG + Chr1:25728597-25728616 None:intergenic 25.0%
! TCACAAAATTTCATATGTGT+CGG + Chr1:25728464-25728483 None:intergenic 25.0%
! TCATTTCCTTTACAAGTTAT+AGG - Chr1:25727356-25727375 MsG0180001710.01.T01:intron 25.0%
! TCTAAATATACTTGCACATT+TGG - Chr1:25730433-25730452 MsG0180001710.01.T01:CDS 25.0%
! TGAAAAAGAAACCAAAACTA+CGG + Chr1:25729081-25729100 None:intergenic 25.0%
! TGATCAAAAGTTAAGAGAAA+AGG + Chr1:25727909-25727928 None:intergenic 25.0%
! TGGATAAATTCATGTAAAAG+TGG + Chr1:25726738-25726757 None:intergenic 25.0%
! TTAAGGTTATGTTTGTGATT+CGG + Chr1:25725690-25725709 None:intergenic 25.0%
! TTACAAAAGTCTCAAATCAT+AGG + Chr1:25724504-25724523 None:intergenic 25.0%
! TTAGGGGAAATATTAGTTAA+TGG - Chr1:25730742-25730761 MsG0180001710.01.T01:intron 25.0%
! TTATCAATATTCACAATTGG+GGG + Chr1:25730343-25730362 None:intergenic 25.0%
!! AAATTGATTATCCGTAGTTT+TGG - Chr1:25729067-25729086 MsG0180001710.01.T01:intron 25.0%
!! AACAAACATAGCATTTTAGA+AGG - Chr1:25724563-25724582 MsG0180001710.01.T01:CDS 25.0%
!! ATATGAAATTTTGTGAAGCA+CGG - Chr1:25728468-25728487 MsG0180001710.01.T01:intron 25.0%
!! CCTTTTATGAATTTTGTACT+TGG - Chr1:25729582-25729601 MsG0180001710.01.T01:intron 25.0%
!! GATTTATACTTTCTTTTCCA+TGG - Chr1:25730970-25730989 MsG0180001710.01.T01:intron 25.0%
!! GTGTAATTTTATTCGTTTTG+TGG - Chr1:25724860-25724879 MsG0180001710.01.T01:intron 25.0%
!! TAACTTGTAAAGGAAATGAA+AGG + Chr1:25727355-25727374 None:intergenic 25.0%
!! TCTCATTACTTTCTGTATTT+TGG - Chr1:25730031-25730050 MsG0180001710.01.T01:intron 25.0%
!! TGCTAACTTTTGTGATTTTT+TGG + Chr1:25729777-25729796 None:intergenic 25.0%
!! TTATAGTGGAGATTTCTAAA+TGG + Chr1:25724912-25724931 None:intergenic 25.0%
!! TTTGGAATGTAAAATAATGC+TGG - Chr1:25731823-25731842 MsG0180001710.01.T01:intron 25.0%
!!! AATCAATTTGGTTTTATGCT+CGG + Chr1:25729056-25729075 None:intergenic 25.0%
!!! ACAAACAACAGTTTAAGTTT+TGG - Chr1:25724382-25724401 MsG0180001710.01.T01:three_prime_UTR 25.0%
!!! ATAAGTAATGTTTGGTTTTG+CGG + Chr1:25726843-25726862 None:intergenic 25.0%
!!! CAAACAACAGTTTAAGTTTT+GGG - Chr1:25724383-25724402 MsG0180001710.01.T01:three_prime_UTR 25.0%
!!! GTTTTTCAGTCATTTTTAGT+AGG - Chr1:25724442-25724461 MsG0180001710.01.T01:three_prime_UTR 25.0%
!!! TGTATGTTTGGTTTCAATTT+TGG - Chr1:25726549-25726568 MsG0180001710.01.T01:intron 25.0%
!!! TGTCTTTAGAATTTTCGTTA+GGG - Chr1:25731215-25731234 MsG0180001710.01.T01:intron 25.0%
!!! TTATAATGTGGATTAGGAAT+TGG + Chr1:25729162-25729181 None:intergenic 25.0%
!!! TTCAAAATGAATGTCACTTT+CGG - Chr1:25725332-25725351 MsG0180001710.01.T01:intron 25.0%
!!! TTGTCTTTAGAATTTTCGTT+AGG - Chr1:25731214-25731233 MsG0180001710.01.T01:intron 25.0%
!!! TTTCTGACATTTTGTTTTTC+AGG + Chr1:25730007-25730026 None:intergenic 25.0%
!!! TTTTCTAAGAAATGACGTAT+CGG - Chr1:25728896-25728915 MsG0180001710.01.T01:intron 25.0%
AAAACAAAGAAGATCATCGA+TGG - Chr1:25725710-25725729 MsG0180001710.01.T01:intron 30.0%
AAAATTGAGTCTGGCTAAAA+GGG + Chr1:25726786-25726805 None:intergenic 30.0%
AAACATACCCTAGAAAATCA+AGG + Chr1:25725028-25725047 None:intergenic 30.0%
AAGAAATCAAAAGTTACCTG+TGG + Chr1:25730671-25730690 None:intergenic 30.0%
AATTGCACACGATTAAAGAA+GGG + Chr1:25725514-25725533 None:intergenic 30.0%
ACAAAAAGCAAGGTTGTTTA+AGG - Chr1:25729388-25729407 MsG0180001710.01.T01:intron 30.0%
ACAAAATCTACTAATCTGCA+AGG + Chr1:25726991-25727010 None:intergenic 30.0%
ACAAAATTCATAAAAGGAGC+CGG + Chr1:25729579-25729598 None:intergenic 30.0%
ACAATTGTACTAACCAATTC+AGG + Chr1:25728356-25728375 None:intergenic 30.0%
ACCAATAATGAAGATTCAAG+AGG - Chr1:25724663-25724682 MsG0180001710.01.T01:intron 30.0%
ACTATAGTGCTATAGAATAG+CGG - Chr1:25727957-25727976 MsG0180001710.01.T01:intron 30.0%
AGAAATTATCCAAGCTTTCA+AGG - Chr1:25731879-25731898 MsG0180001710.01.T01:intron 30.0%
AGATGTTGTATCTGTATTTG+TGG - Chr1:25732013-25732032 MsG0180001710.01.T01:CDS 30.0%
AGGAATGCTGATATTTATAG+TGG + Chr1:25724926-25724945 None:intergenic 30.0%
AGTCAAATACAACATGAAAG+TGG + Chr1:25727458-25727477 None:intergenic 30.0%
AGTTTACTTTCTTCCTGATA+AGG - Chr1:25730294-25730313 MsG0180001710.01.T01:intron 30.0%
ATTCCCAGTTCAAATGAAAA+GGG - Chr1:25731508-25731527 MsG0180001710.01.T01:intron 30.0%
ATTGGTTAGTACAATTGTTC+TGG - Chr1:25728358-25728377 MsG0180001710.01.T01:intron 30.0%
CAGTCAAGTACATTAAGATT+GGG + Chr1:25731735-25731754 None:intergenic 30.0%
CATACAAATAACTCACAGTA+TGG + Chr1:25729887-25729906 None:intergenic 30.0%
CATACTGTGAGTTATTTGTA+TGG - Chr1:25729885-25729904 MsG0180001710.01.T01:intron 30.0%
CCCAATTGTGAATATTGATA+AGG - Chr1:25730342-25730361 MsG0180001710.01.T01:intron 30.0%
CTTAAAATAAGGTTCTGTCT+GGG - Chr1:25729708-25729727 MsG0180001710.01.T01:intron 30.0%
CTTCAGTGTATCTAAATGTT+TGG + Chr1:25728333-25728352 None:intergenic 30.0%
GAGTTATTTGTATGGCAAAA+AGG - Chr1:25729893-25729912 MsG0180001710.01.T01:intron 30.0%
GCTAGAAGCTAATTCAAAAT+AGG + Chr1:25727016-25727035 None:intergenic 30.0%
GCTTAATTAAGTAGGAAAAG+TGG - Chr1:25726924-25726943 MsG0180001710.01.T01:intron 30.0%
GCTTAGGAACTCTTAAAATA+AGG - Chr1:25729697-25729716 MsG0180001710.01.T01:intron 30.0%
GGATTGAACAATAAAACTCA+AGG + Chr1:25726717-25726736 None:intergenic 30.0%
GTGGTTAATCAATATTGACA+TGG + Chr1:25727439-25727458 None:intergenic 30.0%
TAAAATTGAGTCTGGCTAAA+AGG + Chr1:25726787-25726806 None:intergenic 30.0%
TACATCATCATATCGTTTCA+TGG + Chr1:25727862-25727881 None:intergenic 30.0%
TACTCCATTTACTTTGACAA+TGG - Chr1:25731088-25731107 MsG0180001710.01.T01:intron 30.0%
TAGCAAAAACACAAAAAGCA+AGG - Chr1:25729378-25729397 MsG0180001710.01.T01:intron 30.0%
TAGGATAAAGAGTTAGTTAG+GGG - Chr1:25730726-25730745 MsG0180001710.01.T01:intron 30.0%
TATCAATAGAGTAGTTGAAG+AGG + Chr1:25728635-25728654 None:intergenic 30.0%
TATTCCCAGTTCAAATGAAA+AGG - Chr1:25731507-25731526 MsG0180001710.01.T01:intron 30.0%
TCAAAATACAAGTTCTGTGA+AGG - Chr1:25731161-25731180 MsG0180001710.01.T01:intron 30.0%
TCAATACTTCTTGACTTTGT+GGG + Chr1:25728227-25728246 None:intergenic 30.0%
TCAGTCAAGTACATTAAGAT+TGG + Chr1:25731736-25731755 None:intergenic 30.0%
TCTTAAAATAAGGTTCTGTC+TGG - Chr1:25729707-25729726 MsG0180001710.01.T01:intron 30.0%
TGAAACCAAACATACACTAA+GGG + Chr1:25726545-25726564 None:intergenic 30.0%
TGAACGAGAAATTCTGAATA+AGG + Chr1:25724946-25724965 None:intergenic 30.0%
TGATATATGAGTAGACAGAT+AGG + Chr1:25730119-25730138 None:intergenic 30.0%
TGATCTTGTAAAATTGAGTC+TGG + Chr1:25726795-25726814 None:intergenic 30.0%
TGTCAAAATAGCGAATATAG+CGG - Chr1:25727933-25727952 MsG0180001710.01.T01:intron 30.0%
TTAAAATAAGGTTCTGTCTG+GGG - Chr1:25729709-25729728 MsG0180001710.01.T01:intron 30.0%
TTACTCACTTAACAAAGTAG+CGG - Chr1:25729441-25729460 MsG0180001710.01.T01:intron 30.0%
TTATAATAAAACCCGTATCC+CGG - Chr1:25729557-25729576 MsG0180001710.01.T01:intron 30.0%
TTCAATACTTCTTGACTTTG+TGG + Chr1:25728228-25728247 None:intergenic 30.0%
TTCCATAAAAATCACTGTCA+CGG - Chr1:25727279-25727298 MsG0180001710.01.T01:intron 30.0%
TTGAAACCAAACATACACTA+AGG + Chr1:25726546-25726565 None:intergenic 30.0%
TTGCTTGTGTGAATATTTGT+AGG - Chr1:25728167-25728186 MsG0180001710.01.T01:intron 30.0%
TTTAGCAAATTGAGTGGTTT+CGG - Chr1:25727522-25727541 MsG0180001710.01.T01:intron 30.0%
TTTATATGCATGTTCTTTGC+TGG - Chr1:25728764-25728783 MsG0180001710.01.T01:intron 30.0%
TTTCACTTGATTCAGTTGTT+GGG - Chr1:25725932-25725951 MsG0180001710.01.T01:CDS 30.0%
! AAGCTAGAATTTGTAGGTTT+TGG - Chr1:25726672-25726691 MsG0180001710.01.T01:intron 30.0%
! AATAAACCACAATTTTCGCA+CGG + Chr1:25731491-25731510 None:intergenic 30.0%
! AGGTGCTTGATTTGAATTTA+TGG + Chr1:25729623-25729642 None:intergenic 30.0%
! GGTGCTTGATTTGAATTTAT+GGG + Chr1:25729622-25729641 None:intergenic 30.0%
! GTCAATGTCTAGAATAATGT+TGG - Chr1:25729350-25729369 MsG0180001710.01.T01:intron 30.0%
! TAAAAAGTGTGGGATTTGAA+GGG + Chr1:25725852-25725871 None:intergenic 30.0%
! TGGATAAGCAATGATGTTTT+TGG + Chr1:25730651-25730670 None:intergenic 30.0%
! TGTAGGGTTTACTAAGTTTT+GGG + Chr1:25725655-25725674 None:intergenic 30.0%
! TTCTTTAAAAGGTGATTGAG+CGG + Chr1:25729110-25729129 None:intergenic 30.0%
! TTGAGTTGTTAGATTGAGAT+TGG + Chr1:25725589-25725608 None:intergenic 30.0%
! TTGCAAAAAGTAACCACTTT+TGG - Chr1:25729294-25729313 MsG0180001710.01.T01:intron 30.0%
! TTGTAGGGTTTACTAAGTTT+TGG + Chr1:25725656-25725675 None:intergenic 30.0%
! TTTTAACAACCATGAGAGAA+TGG + Chr1:25729205-25729224 None:intergenic 30.0%
! TTTTCACTTGATTCAGTTGT+TGG - Chr1:25725931-25725950 MsG0180001710.01.T01:CDS 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr1:25725295-25725314 None:intergenic 30.0%
!! ATGTTTGGTTTCAATTTTGG+TGG - Chr1:25726552-25726571 MsG0180001710.01.T01:intron 30.0%
!! CAATTCTGAGATATCTTTGA+AGG - Chr1:25725751-25725770 MsG0180001710.01.T01:intron 30.0%
!! CACAGAACTTGTATTTTGAA+TGG + Chr1:25731160-25731179 None:intergenic 30.0%
!! TAGTTTGTTTATCACTGTTG+AGG - Chr1:25731968-25731987 MsG0180001710.01.T01:intron 30.0%
!! TGTTTGGTTTCAATTTTGGT+GGG - Chr1:25726553-25726572 MsG0180001710.01.T01:intron 30.0%
!!! ATGTGCATGTCTTTTTTTAG+TGG - Chr1:25731190-25731209 MsG0180001710.01.T01:intron 30.0%
!!! GGATACGGGTTTTATTATAA+AGG + Chr1:25729557-25729576 None:intergenic 30.0%
!!! GGTTTTATTATAAAGGTGCA+GGG + Chr1:25729550-25729569 None:intergenic 30.0%
!!! TTTCAAGGAGTTGCATTTTT+TGG - Chr1:25731894-25731913 MsG0180001710.01.T01:intron 30.0%
AAACATCATTGCTTATCCAC+AGG - Chr1:25730652-25730671 MsG0180001710.01.T01:intron 35.0%
AAACTCACATTGAAAGCTTC+CGG - Chr1:25729259-25729278 MsG0180001710.01.T01:intron 35.0%
AACACATTCAGAACTGAACA+GGG - Chr1:25729927-25729946 MsG0180001710.01.T01:intron 35.0%
AAGATTACCACTATGTGGAT+TGG - Chr1:25728968-25728987 MsG0180001710.01.T01:intron 35.0%
ACATTCAGTAAATAGAGCAG+TGG - Chr1:25730827-25730846 MsG0180001710.01.T01:intron 35.0%
ACGTATCATAACAGATACGT+TGG - Chr1:25728535-25728554 MsG0180001710.01.T01:CDS 35.0%
ACTCAATAAAGTTCCCTGTA+TGG - Chr1:25730492-25730511 MsG0180001710.01.T01:CDS 35.0%
ACTTGAGAACTCTTAAAGTG+AGG + Chr1:25729643-25729662 None:intergenic 35.0%
ATCAAAACTTAAGATGGGAG+TGG + Chr1:25725231-25725250 None:intergenic 35.0%
ATCCAGTATTCCCCAATAAT+CGG + Chr1:25727132-25727151 None:intergenic 35.0%
ATTAAAACCCGAATGGGAAA+AGG - Chr1:25727716-25727735 MsG0180001710.01.T01:intron 35.0%
ATTATGAAGGTGAGTCTGTT+AGG - Chr1:25730700-25730719 MsG0180001710.01.T01:intron 35.0%
CAAAATTATGGCAGTTCAAG+AGG - Chr1:25724964-25724983 MsG0180001710.01.T01:intron 35.0%
CAAAATTCATAAAAGGAGCC+GGG + Chr1:25729578-25729597 None:intergenic 35.0%
CAATTCTTATGGTTCCTCTA+AGG - Chr1:25731255-25731274 MsG0180001710.01.T01:intron 35.0%
CAATTGCACACGATTAAAGA+AGG + Chr1:25725515-25725534 None:intergenic 35.0%
CACGAAGAAATCATGCAAAT+CGG - Chr1:25724600-25724619 MsG0180001710.01.T01:intron 35.0%
CATTTACTTTGACAATGGAG+AGG - Chr1:25731093-25731112 MsG0180001710.01.T01:intron 35.0%
CCAAAGAGACAACAAAACAT+AGG + Chr1:25731808-25731827 None:intergenic 35.0%
CGTATCATAACAGATACGTT+GGG - Chr1:25728536-25728555 MsG0180001710.01.T01:CDS 35.0%
CTCTCCATTGTCAAAGTAAA+TGG + Chr1:25731095-25731114 None:intergenic 35.0%
CTGGATTGTGATGAAAATGA+CGG - Chr1:25727146-25727165 MsG0180001710.01.T01:intron 35.0%
CTTCTTTAATCGTGTGCAAT+TGG - Chr1:25725513-25725532 MsG0180001710.01.T01:intron 35.0%
GAACCATAAGAATTGATCGA+TGG + Chr1:25731250-25731269 None:intergenic 35.0%
GACCTAAAAACGACGAAAAT+CGG - Chr1:25724753-25724772 MsG0180001710.01.T01:CDS 35.0%
GAGTTCCTAAGCTATTTGTT+TGG + Chr1:25729689-25729708 None:intergenic 35.0%
GATACTTACCAGACACAATA+CGG + Chr1:25728511-25728530 None:intergenic 35.0%
GATGAGATAACCCAAAGTTA+AGG + Chr1:25730084-25730103 None:intergenic 35.0%
GCCTCTTGAATCTTCATTAT+TGG + Chr1:25724667-25724686 None:intergenic 35.0%
GGAATTCTCTCTTTAAACTC+CGG + Chr1:25727324-25727343 None:intergenic 35.0%
GGAGATTTCTAAATGGCTTT+AGG + Chr1:25724905-25724924 None:intergenic 35.0%
GGAGTTACGTATTTAAACTG+TGG - Chr1:25727543-25727562 MsG0180001710.01.T01:intron 35.0%
GTCTCTACAGAAGACAATAT+AGG - Chr1:25730930-25730949 MsG0180001710.01.T01:intron 35.0%
TAAAATAAGGTTCTGTCTGG+GGG - Chr1:25729710-25729729 MsG0180001710.01.T01:intron 35.0%
TACGTGAAGCTAGAATTTGT+AGG - Chr1:25726666-25726685 MsG0180001710.01.T01:intron 35.0%
TAGTAGAGAATCAGCATAAC+CGG - Chr1:25727302-25727321 MsG0180001710.01.T01:intron 35.0%
TATGAGATCGAATGTTGACA+TGG - Chr1:25728307-25728326 MsG0180001710.01.T01:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG - Chr1:25726519-25726538 MsG0180001710.01.T01:intron 35.0%
TCAAGTACATTAAGATTGGG+AGG + Chr1:25731732-25731751 None:intergenic 35.0%
TCTATACTCAAGCCATCAAA+AGG - Chr1:25725825-25725844 MsG0180001710.01.T01:intron 35.0%
TCTCCATCGATCAATTCTTA+TGG - Chr1:25731244-25731263 MsG0180001710.01.T01:intron 35.0%
TCTGCTTGAATACATTTCCA+GGG - Chr1:25727807-25727826 MsG0180001710.01.T01:intron 35.0%
TCTTCTGTAGAGACACTATT+AGG + Chr1:25730924-25730943 None:intergenic 35.0%
TGATTGCTCTTGATCTATTC+TGG - Chr1:25731934-25731953 MsG0180001710.01.T01:intron 35.0%
TTCACACAAGCAAATGTATC+AGG + Chr1:25728160-25728179 None:intergenic 35.0%
TTCTGCTTGAATACATTTCC+AGG - Chr1:25727806-25727825 MsG0180001710.01.T01:intron 35.0%
! AAATAACTTGCATCGGAACT+TGG + Chr1:25724724-25724743 None:intergenic 35.0%
! AAGCTTGAATGCCGATTATT+GGG - Chr1:25727118-25727137 MsG0180001710.01.T01:intron 35.0%
! AATAACTTGCATCGGAACTT+GGG + Chr1:25724723-25724742 None:intergenic 35.0%
! AGATCTTACCTTTTCCCATT+CGG + Chr1:25727727-25727746 None:intergenic 35.0%
! ATTATGTGGCTTTTGTCAGA+GGG - Chr1:25729492-25729511 MsG0180001710.01.T01:intron 35.0%
! CATTGTGGTTTTCTTGATCT+GGG - Chr1:25725984-25726003 MsG0180001710.01.T01:CDS 35.0%
! CGTCTTCAAATAACTTGCAT+CGG + Chr1:25724731-25724750 None:intergenic 35.0%
! CTAAAAAGTGTGGGATTTGA+AGG + Chr1:25725853-25725872 None:intergenic 35.0%
! CTCACTCCTATAACTTGTAA+AGG + Chr1:25727365-25727384 None:intergenic 35.0%
! CTTTTGGATTTTAAACTCCC+TGG - Chr1:25729310-25729329 MsG0180001710.01.T01:intron 35.0%
! GAGATATCTTTGAAGGATCA+AGG - Chr1:25725758-25725777 MsG0180001710.01.T01:intron 35.0%
! GCTAAAGCGCTTAATTAAGT+AGG - Chr1:25726916-25726935 MsG0180001710.01.T01:intron 35.0%
! GCTTGATTTGAATTTATGGG+AGG + Chr1:25729619-25729638 None:intergenic 35.0%
! GGGAGTTTAAAATCCAAAAG+TGG + Chr1:25729310-25729329 None:intergenic 35.0%
! TACCGTGACAGTGATTTTTA+TGG + Chr1:25727284-25727303 None:intergenic 35.0%
! TCAGGAAAAGCATACATTTC+CGG + Chr1:25724318-25724337 None:intergenic 35.0%
! TCCTTTTGTAAATGCTCTTG+AGG + Chr1:25724689-25724708 None:intergenic 35.0%
! TCGGTTGCAAATGTTTTGTA+GGG + Chr1:25725671-25725690 None:intergenic 35.0%
! TCTTGATCTATTCTGGAAAC+TGG - Chr1:25731941-25731960 MsG0180001710.01.T01:intron 35.0%
! TGTATACCTTGCTATGTTCA+GGG - Chr1:25731646-25731665 MsG0180001710.01.T01:intron 35.0%
! TGTCCCTTTTCATTTGAACT+GGG + Chr1:25731514-25731533 None:intergenic 35.0%
! TTCGGTTGCAAATGTTTTGT+AGG + Chr1:25725672-25725691 None:intergenic 35.0%
! TTGTATACCTTGCTATGTTC+AGG - Chr1:25731645-25731664 MsG0180001710.01.T01:intron 35.0%
! TTTGGGATAATCTTTCTCGT+TGG - Chr1:25730451-25730470 MsG0180001710.01.T01:CDS 35.0%
!! AAGCGACACTCATTTTGATA+CGG - Chr1:25725539-25725558 MsG0180001710.01.T01:intron 35.0%
!! ACTGCTTTTGATTGGAAGTT+GGG - Chr1:25728106-25728125 MsG0180001710.01.T01:intron 35.0%
!! AGTAGGTTTTAGCAGCAAAA+AGG - Chr1:25724459-25724478 MsG0180001710.01.T01:three_prime_UTR 35.0%
!! ATGTGGATTAGGAATTGGAA+TGG + Chr1:25729157-25729176 None:intergenic 35.0%
!! CCTATGTTTTGTTGTCTCTT+TGG - Chr1:25731805-25731824 MsG0180001710.01.T01:intron 35.0%
!! CTTCAAATCCCACACTTTTT+AGG - Chr1:25725851-25725870 MsG0180001710.01.T01:intron 35.0%
!! GCTTTTTCTATCGTTACTTG+AGG - Chr1:25724359-25724378 MsG0180001710.01.T01:three_prime_UTR 35.0%
!! GTTGATTTTGATACTCTCCA+GGG + Chr1:25729330-25729349 None:intergenic 35.0%
!! GTTTGGTTTCAATTTTGGTG+GGG - Chr1:25726554-25726573 MsG0180001710.01.T01:intron 35.0%
!! TAATCTTTCTCGTTGGCTTA+TGG - Chr1:25730458-25730477 MsG0180001710.01.T01:CDS 35.0%
!! TCAAGAGCATTTACAAAAGG+AGG - Chr1:25724688-25724707 MsG0180001710.01.T01:intron 35.0%
!! TTGACAACACTGCTTTTGAT+TGG - Chr1:25728098-25728117 MsG0180001710.01.T01:intron 35.0%
!!! AAATCCCACACTTTTTAGGT+AGG - Chr1:25725855-25725874 MsG0180001710.01.T01:intron 35.0%
!!! AAGTTTTGGGTTGTGATTAC+AGG - Chr1:25724396-25724415 MsG0180001710.01.T01:three_prime_UTR 35.0%
!!! ACCTTCCCTTTGTTTTCTTT+TGG + Chr1:25725618-25725637 None:intergenic 35.0%
!!! GGGTTTTATTATAAAGGTGC+AGG + Chr1:25729551-25729570 None:intergenic 35.0%
AACAACATTCTATGTCTGCC+AGG - Chr1:25731390-25731409 MsG0180001710.01.T01:intron 40.0%
AACTCACATTGAAAGCTTCC+GGG - Chr1:25729260-25729279 MsG0180001710.01.T01:intron 40.0%
AAGCATAAAGCTAGCATCCA+TGG + Chr1:25730990-25731009 None:intergenic 40.0%
AAGTGATCGAAGGCTCTATT+TGG + Chr1:25726894-25726913 None:intergenic 40.0%
AAGTGCATCCAAAAAAGGGT+GGG + Chr1:25731557-25731576 None:intergenic 40.0%
AATGCAACTCCTTGAAAGCT+TGG + Chr1:25731891-25731910 None:intergenic 40.0%
AGAGTTCTCAAGTGAAGAGT+TGG - Chr1:25729650-25729669 MsG0180001710.01.T01:intron 40.0%
AGATACACTGAAGCCTGAAT+TGG - Chr1:25728340-25728359 MsG0180001710.01.T01:intron 40.0%
AGCCACATAATGATTTGACG+TGG + Chr1:25729483-25729502 None:intergenic 40.0%
AGGTGAGTCTGTTAGGTTAT+AGG - Chr1:25730707-25730726 MsG0180001710.01.T01:intron 40.0%
AGTATGGATCTGAAGAAAGC+TGG - Chr1:25730191-25730210 MsG0180001710.01.T01:intron 40.0%
ATACTGCGAAGCTATCTGAA+AGG + Chr1:25728202-25728221 None:intergenic 40.0%
ATGGCATGAAACTTCTTCAG+TGG - Chr1:25730264-25730283 MsG0180001710.01.T01:intron 40.0%
ATTATGGCAGTTCAAGAGGA+AGG - Chr1:25724968-25724987 MsG0180001710.01.T01:intron 40.0%
CAACACATTCAGAACTGAAC+AGG - Chr1:25729926-25729945 MsG0180001710.01.T01:intron 40.0%
CACAATTGGGGGATACTTAT+CGG + Chr1:25730332-25730351 None:intergenic 40.0%
CACATAATGATTTGACGTGG+TGG + Chr1:25729480-25729499 None:intergenic 40.0%
CACCACGTCAAATCATTATG+TGG - Chr1:25729478-25729497 MsG0180001710.01.T01:intron 40.0%
CATCTAACCAATCCACATAG+TGG + Chr1:25728978-25728997 None:intergenic 40.0%
CATGCTAGTTGAGCACTATT+AGG + Chr1:25728391-25728410 None:intergenic 40.0%
GAATCAGAGGGATAAAGAGA+AGG + Chr1:25731019-25731038 None:intergenic 40.0%
GACCCACATCGTTATTTACA+GGG + Chr1:25727201-25727220 None:intergenic 40.0%
GCCAAAAGAAAACAAAGGGA+AGG - Chr1:25725614-25725633 MsG0180001710.01.T01:CDS 40.0%
GCTTTAGCATAAGTGATCGA+AGG + Chr1:25726904-25726923 None:intergenic 40.0%
GGATCTTTACTCTAGCTACA+TGG - Chr1:25731114-25731133 MsG0180001710.01.T01:intron 40.0%
TAACAACCATGAGAGAATGG+CGG + Chr1:25729202-25729221 None:intergenic 40.0%
TAAGGTTCTCTACTATGCCT+GGG - Chr1:25731273-25731292 MsG0180001710.01.T01:intron 40.0%
TAAGTGCATCCAAAAAAGGG+TGG + Chr1:25731558-25731577 None:intergenic 40.0%
TAATATACATGACCCATCCC+AGG + Chr1:25731293-25731312 None:intergenic 40.0%
TAATCCAATCCAACGTTCGA+CGG - Chr1:25729841-25729860 MsG0180001710.01.T01:intron 40.0%
TACATTTCCAGGGACATTTC+CGG - Chr1:25727817-25727836 MsG0180001710.01.T01:intron 40.0%
TATGAGAAAACTCTCCTCCA+CGG + Chr1:25730873-25730892 None:intergenic 40.0%
TGACCCACATCGTTATTTAC+AGG + Chr1:25727202-25727221 None:intergenic 40.0%
TGGAGACTGCTGTAAAATCA+TGG - Chr1:25730245-25730264 MsG0180001710.01.T01:intron 40.0%
TTACCGCAGTACATTCAAGT+GGG + Chr1:25724244-25724263 None:intergenic 40.0%
TTGTGATGAAAATGACGGTG+CGG - Chr1:25727151-25727170 MsG0180001710.01.T01:intron 40.0%
! AGCTTGAATGCCGATTATTG+GGG - Chr1:25727119-25727138 MsG0180001710.01.T01:intron 40.0%
! CAGGAAAAGCATACATTTCC+GGG + Chr1:25724317-25724336 None:intergenic 40.0%
! CATACTTTTCAGACTGCAAG+GGG + Chr1:25730177-25730196 None:intergenic 40.0%
! CATTATGTGGCTTTTGTCAG+AGG - Chr1:25729491-25729510 MsG0180001710.01.T01:intron 40.0%
! CCATACTTTTCAGACTGCAA+GGG + Chr1:25730178-25730197 None:intergenic 40.0%
! CCTCACATTTGAAATGCTCA+GGG + Chr1:25724833-25724852 None:intergenic 40.0%
! CTGTCCCTTTTCATTTGAAC+TGG + Chr1:25731515-25731534 None:intergenic 40.0%
! GAAGCTTGAATGCCGATTAT+TGG - Chr1:25727117-25727136 MsG0180001710.01.T01:intron 40.0%
! GATCCAGAAATTTTGGACGT+TGG - Chr1:25731668-25731687 MsG0180001710.01.T01:intron 40.0%
! GATCTTACCTTTTCCCATTC+GGG + Chr1:25727726-25727745 None:intergenic 40.0%
! GATTTGAAGGGTCCTTTTGA+TGG + Chr1:25725840-25725859 None:intergenic 40.0%
! GCATTGTGGTTTTCTTGATC+TGG - Chr1:25725983-25726002 MsG0180001710.01.T01:CDS 40.0%
! GGTACCTACCTAAAAAGTGT+GGG + Chr1:25725862-25725881 None:intergenic 40.0%
! GTCTTTTCTTTGAACAAGCG+AGG + Chr1:25731710-25731729 None:intergenic 40.0%
! GTTCAGGGATCCAGAAATTT+TGG - Chr1:25731661-25731680 MsG0180001710.01.T01:intron 40.0%
! TATTCTAGAAGGGTATACCG+TGG - Chr1:25730853-25730872 MsG0180001710.01.T01:intron 40.0%
! TCCATACTTTTCAGACTGCA+AGG + Chr1:25730179-25730198 None:intergenic 40.0%
! TCCTCACATTTGAAATGCTC+AGG + Chr1:25724834-25724853 None:intergenic 40.0%
! TGATTTTACAGCAGTCTCCA+TGG + Chr1:25730245-25730264 None:intergenic 40.0%
! TGTGTCTCATTCCATTTTCC+AGG - Chr1:25730532-25730551 MsG0180001710.01.T01:intron 40.0%
!! AGCGACACTCATTTTGATAC+GGG - Chr1:25725540-25725559 MsG0180001710.01.T01:intron 40.0%
!! AGGTTTTAGCAGCAAAAAGG+AGG - Chr1:25724462-25724481 MsG0180001710.01.T01:three_prime_UTR 40.0%
!! CAACTTGTTGCTACGAATGA+TGG + Chr1:25729017-25729036 None:intergenic 40.0%
!! CACTATGTGGATTGGTTAGA+TGG - Chr1:25728976-25728995 MsG0180001710.01.T01:intron 40.0%
!! CACTGCTTTTGATTGGAAGT+TGG - Chr1:25728105-25728124 MsG0180001710.01.T01:intron 40.0%
!! GCAGCTGTTTTCCATTTCTT+AGG - Chr1:25730579-25730598 MsG0180001710.01.T01:intron 40.0%
!! GCCTCAAGAGCATTTACAAA+AGG - Chr1:25724685-25724704 MsG0180001710.01.T01:intron 40.0%
!! GCTTGCTATCTTTCACTAGT+TGG + Chr1:25728268-25728287 None:intergenic 40.0%
!! GTTGTTTTGTCACTGCATTG+TGG - Chr1:25725969-25725988 MsG0180001710.01.T01:CDS 40.0%
!! TGGCTTTAGGCTAAAAACAC+AGG + Chr1:25724892-25724911 None:intergenic 40.0%
!!! CGTTGATTTTGATACTCTCC+AGG + Chr1:25729331-25729350 None:intergenic 40.0%
!!! CTCCGATTTTCGTCGTTTTT+AGG + Chr1:25724758-25724777 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr1:25725291-25725310 None:intergenic 40.0%
!!! GGGTTTACTAAGTTTTGGGT+AGG + Chr1:25725651-25725670 None:intergenic 40.0%
!!! GGTAACGAGTTTTTCAAGTC+AGG - Chr1:25725779-25725798 MsG0180001710.01.T01:intron 40.0%
!!! GGTTACTTTTTGCAACCACT+TGG + Chr1:25729289-25729308 None:intergenic 40.0%
AAAAGGGACAGATACTGTGC+AGG - Chr1:25731524-25731543 MsG0180001710.01.T01:intron 45.0%
AAACAGCTGCTGTGTGTTTC+TGG + Chr1:25730569-25730588 None:intergenic 45.0%
AAGGCCAAGGATCAAGGAAA+TGG - Chr1:25731419-25731438 MsG0180001710.01.T01:intron 45.0%
ACACAATACGGCGAGCAAAT+TGG + Chr1:25728499-25728518 None:intergenic 45.0%
ACAGGCCCTTAGTGTATGTT+TGG - Chr1:25726537-25726556 MsG0180001710.01.T01:intron 45.0%
ACATACACTAAGGGCCTGTT+TGG + Chr1:25726536-25726555 None:intergenic 45.0%
ACATGCGAGTGGCGTTAAAT+TGG - Chr1:25729411-25729430 MsG0180001710.01.T01:intron 45.0%
AGACCCACTTGAATGTACTG+CGG - Chr1:25724238-25724257 MsG0180001710.01.T01:three_prime_UTR 45.0%
AGGGCCAGTCACTTAGATTA+GGG + Chr1:25727182-25727201 None:intergenic 45.0%
ATTTCTTAGGCAGTATGCCG+AGG - Chr1:25730592-25730611 MsG0180001710.01.T01:intron 45.0%
CAAAACAGAGCACAAGCCAT+TGG + Chr1:25728567-25728586 None:intergenic 45.0%
CAGAGGGATAAAGAGAAGGA+AGG + Chr1:25731015-25731034 None:intergenic 45.0%
CATGCGAGTGGCGTTAAATT+GGG - Chr1:25729412-25729431 MsG0180001710.01.T01:intron 45.0%
CCCTGAGCATTTCAAATGTG+AGG - Chr1:25724830-25724849 MsG0180001710.01.T01:intron 45.0%
CCCTTGCAGTCTGAAAAGTA+TGG - Chr1:25730175-25730194 MsG0180001710.01.T01:intron 45.0%
CGACGAAAATCGGAGAAACT+AGG - Chr1:25724763-25724782 MsG0180001710.01.T01:CDS 45.0%
CTAAGGTTCTCTACTATGCC+TGG - Chr1:25731272-25731291 MsG0180001710.01.T01:intron 45.0%
CTTACCGCAGTACATTCAAG+TGG + Chr1:25724245-25724264 None:intergenic 45.0%
GAGGCAAGTTTGTAGACAGT+AGG - Chr1:25731987-25732006 MsG0180001710.01.T01:intron 45.0%
GATGTACTAAGCACAACTCC+CGG - Chr1:25724296-25724315 MsG0180001710.01.T01:three_prime_UTR 45.0%
GCTTCCATTTCCTTGATCCT+TGG + Chr1:25731426-25731445 None:intergenic 45.0%
GGCATAGTAGAGAACCTTAG+AGG + Chr1:25731272-25731291 None:intergenic 45.0%
GGCCCTGTAAATAACGATGT+GGG - Chr1:25727196-25727215 MsG0180001710.01.T01:intron 45.0%
GGGTACCTACCTAAAAAGTG+TGG + Chr1:25725863-25725882 None:intergenic 45.0%
GTTCAAGAGGAAGGCTACTT+TGG - Chr1:25724977-25724996 MsG0180001710.01.T01:intron 45.0%
GTTGTTTAAGGACATGCGAG+TGG - Chr1:25729400-25729419 MsG0180001710.01.T01:intron 45.0%
TAGCCCCTAATCTAAGTGAC+TGG - Chr1:25727175-25727194 MsG0180001710.01.T01:intron 45.0%
TCATAAAAGGAGCCGGGATA+CGG + Chr1:25729572-25729591 None:intergenic 45.0%
TCGGCATACTGCCTAAGAAA+TGG + Chr1:25730593-25730612 None:intergenic 45.0%
TCTGGCTAAAAGGGAGTTGA+AGG + Chr1:25726777-25726796 None:intergenic 45.0%
TGACTCAAAGGCCTGGAAAA+TGG + Chr1:25730546-25730565 None:intergenic 45.0%
TGCCCTTGAAAAAGACTCCT+CGG + Chr1:25730612-25730631 None:intergenic 45.0%
TGCTGCAGCATTGCTACAAT+TGG - Chr1:25727650-25727669 MsG0180001710.01.T01:intron 45.0%
TGGCCCTGTAAATAACGATG+TGG - Chr1:25727195-25727214 MsG0180001710.01.T01:intron 45.0%
TTCTCTACTATGCCTGGGAT+GGG - Chr1:25731278-25731297 MsG0180001710.01.T01:intron 45.0%
TTTATGCTCGGTAGATCACC+AGG + Chr1:25729044-25729063 None:intergenic 45.0%
TTTCCGGAAGGGATGCATAT+TGG - Chr1:25727833-25727852 MsG0180001710.01.T01:intron 45.0%
! AACCACAATTTTCGCACGGA+AGG + Chr1:25731487-25731506 None:intergenic 45.0%
! AGCAGTGGCTCTATTCTAGA+AGG - Chr1:25730842-25730861 MsG0180001710.01.T01:intron 45.0%
! GCAGTGGCTCTATTCTAGAA+GGG - Chr1:25730843-25730862 MsG0180001710.01.T01:intron 45.0%
! GTCTGCGTCTTTTCCTTATC+AGG + Chr1:25730310-25730329 None:intergenic 45.0%
! TGCCGATTATTGGGGAATAC+TGG - Chr1:25727127-25727146 MsG0180001710.01.T01:intron 45.0%
! TGGAAGCATGCACAGAATGA+TGG - Chr1:25731439-25731458 MsG0180001710.01.T01:intron 45.0%
! TGTTGCTACGAATGATGGAG+CGG + Chr1:25729012-25729031 None:intergenic 45.0%
! TTTTCTCCGCCATTCTCTCA+TGG - Chr1:25729193-25729212 MsG0180001710.01.T01:intron 45.0%
!! AGGAAATGAAAGGTACTCGC+TGG + Chr1:25727345-25727364 None:intergenic 45.0%
!! ATGCCGAGGAGTCTTTTTCA+AGG - Chr1:25730606-25730625 MsG0180001710.01.T01:intron 45.0%
!! CGACACTCATTTTGATACGG+GGG - Chr1:25725542-25725561 MsG0180001710.01.T01:intron 45.0%
!! GCGACACTCATTTTGATACG+GGG - Chr1:25725541-25725560 MsG0180001710.01.T01:intron 45.0%
!! GTGTGTTTCTGGTGACTCAA+AGG + Chr1:25730558-25730577 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr1:25725292-25725311 None:intergenic 45.0%
!!! GTTTCTCTCCCACCCTTTTT+TGG - Chr1:25731546-25731565 MsG0180001710.01.T01:intron 45.0%
!!! TGCCGAGGAGTCTTTTTCAA+GGG - Chr1:25730607-25730626 MsG0180001710.01.T01:intron 45.0%
!! GTAATATAATATTAATTAAA+GGG + Chr1:25725394-25725413 None:intergenic 5.0%
!! TGTAATATAATATTAATTAA+AGG + Chr1:25725395-25725414 None:intergenic 5.0%
!!! TTAAAGAAAAAATAATATTT+TGG + Chr1:25725424-25725443 None:intergenic 5.0%
ACATTCAAGTGGGTCTGGCT+TGG + Chr1:25724234-25724253 None:intergenic 50.0%
ATCGGAGAAACTAGGCCACA+AGG - Chr1:25724771-25724790 MsG0180001710.01.T01:CDS 50.0%
CAATGCTGCAGCACGATTAC+TGG + Chr1:25727643-25727662 None:intergenic 50.0%
CACTAAGGGCCTGTTTGGAT+TGG + Chr1:25726531-25726550 None:intergenic 50.0%
CAGGGCCAGTCACTTAGATT+AGG + Chr1:25727183-25727202 None:intergenic 50.0%
CATAAAAGGAGCCGGGATAC+GGG + Chr1:25729571-25729590 None:intergenic 50.0%
CATTCTATGTCTGCCAGGTC+TGG - Chr1:25731395-25731414 MsG0180001710.01.T01:intron 50.0%
CCTCCAATATGCATCCCTTC+CGG + Chr1:25727839-25727858 None:intergenic 50.0%
CTCCTTCCGTGCGAAAATTG+TGG - Chr1:25731482-25731501 MsG0180001710.01.T01:intron 50.0%
CTGGATCCCTGAACATAGCA+AGG + Chr1:25731655-25731674 None:intergenic 50.0%
GATACGTTGGGATGCACCAA+TGG - Chr1:25728548-25728567 MsG0180001710.01.T01:CDS 50.0%
GCAGTACATTCAAGTGGGTC+TGG + Chr1:25724239-25724258 None:intergenic 50.0%
GCGCCAACGTCCAAAATTTC+TGG + Chr1:25731674-25731693 None:intergenic 50.0%
GGGCCAGTCACTTAGATTAG+GGG + Chr1:25727181-25727200 None:intergenic 50.0%
GTAGCAACAAGTTGCTGTCC+TGG - Chr1:25729023-25729042 MsG0180001710.01.T01:intron 50.0%
GTCTGGGGGTTCACAGAAAT+GGG - Chr1:25729724-25729743 MsG0180001710.01.T01:intron 50.0%
GTTCTCTACTATGCCTGGGA+TGG - Chr1:25731277-25731296 MsG0180001710.01.T01:intron 50.0%
TAGCAAGCGAGCTCAAGAAG+TGG - Chr1:25728280-25728299 MsG0180001710.01.T01:intron 50.0%
TATGTCTGCCAGGTCTGGAA+AGG - Chr1:25731400-25731419 MsG0180001710.01.T01:intron 50.0%
TCACATTGAAAGCTTCCGGG+TGG - Chr1:25729263-25729282 MsG0180001710.01.T01:intron 50.0%
TCTGGAAAGGCCAAGGATCA+AGG - Chr1:25731413-25731432 MsG0180001710.01.T01:intron 50.0%
TGTCTGGGGGTTCACAGAAA+TGG - Chr1:25729723-25729742 MsG0180001710.01.T01:intron 50.0%
TTAGTCCAACCGTCGAACGT+TGG + Chr1:25729853-25729872 None:intergenic 50.0%
TTCCAGGGACATTTCCGGAA+GGG - Chr1:25727822-25727841 MsG0180001710.01.T01:intron 50.0%
TTTCCAGGGACATTTCCGGA+AGG - Chr1:25727821-25727840 MsG0180001710.01.T01:intron 50.0%
TTTGCTCGCCGTATTGTGTC+TGG - Chr1:25728500-25728519 MsG0180001710.01.T01:intron 50.0%
! CGAATGATGGAGCGGTAAGA+AGG + Chr1:25729004-25729023 None:intergenic 50.0%
! TCTAGAAGGGTATACCGTGG+AGG - Chr1:25730856-25730875 MsG0180001710.01.T01:intron 50.0%
! TTTCTGGTGACTCAAAGGCC+TGG + Chr1:25730553-25730572 None:intergenic 50.0%
!! GACGTGGTGGCTTTAGATTG+TGG + Chr1:25729467-25729486 None:intergenic 50.0%
!! GCTAGAGCACTGTAGTGTAG+TGG - Chr1:25728040-25728059 MsG0180001710.01.T01:intron 50.0%
!!! GTTTTTGGCAGCCACTAAGC+AGG + Chr1:25730636-25730655 None:intergenic 50.0%
ACAATTTGCCATGCCGCGCA+TGG + Chr1:25724802-25724821 None:intergenic 55.0%
ATCCCTTCCGGAAATGTCCC+TGG + Chr1:25727827-25727846 None:intergenic 55.0%
CCAACCGTCGAACGTTGGAT+TGG + Chr1:25729848-25729867 None:intergenic 55.0%
CCAATCCAACGTTCGACGGT+TGG - Chr1:25729845-25729864 MsG0180001710.01.T01:intron 55.0%
CCGGAAGGGATGCATATTGG+AGG - Chr1:25727836-25727855 MsG0180001710.01.T01:intron 55.0%
CTCATTCCTCGTCGAGACCA+TGG - Chr1:25730225-25730244 MsG0180001710.01.T01:intron 55.0%
TTCAAGGGCAGCCTGCTTAG+TGG - Chr1:25730622-25730641 MsG0180001710.01.T01:intron 55.0%
TTTGCAACCACTTGGCCACC+CGG + Chr1:25729281-25729300 None:intergenic 55.0%
! ATCCTTGGCCTTTCCAGACC+TGG + Chr1:25731411-25731430 None:intergenic 55.0%
AAAGCTTCCGGGTGGCCAAG+TGG - Chr1:25729271-25729290 MsG0180001710.01.T01:intron 60.0%
CAGTCTCCATGGTCTCGACG+AGG + Chr1:25730234-25730253 None:intergenic 60.0%
CCACAAGGAGCAACCATGCG+CGG - Chr1:25724786-25724805 MsG0180001710.01.T01:CDS 60.0%
TGCCAGGTCTGGAAAGGCCA+AGG - Chr1:25731406-25731425 MsG0180001710.01.T01:intron 60.0%
AGGAGCAACCATGCGCGGCA+TGG - Chr1:25724791-25724810 MsG0180001710.01.T01:CDS 65.0%
CCGCGCATGGTTGCTCCTTG+TGG + Chr1:25724789-25724808 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 25724194 25732062 25724194 ID=MsG0180001710.01;Name=MsG0180001710.01
Chr1 mRNA 25724194 25732062 25724194 ID=MsG0180001710.01.T01;Parent=MsG0180001710.01;Name=MsG0180001710.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0.5|0.71|0.85|0.66|0.71|7|320|275
Chr1 exon 25724194 25724589 25724194 ID=MsG0180001710.01.T01:exon:595;Parent=MsG0180001710.01.T01
Chr1 exon 25724711 25724844 25724711 ID=MsG0180001710.01.T01:exon:594;Parent=MsG0180001710.01.T01
Chr1 exon 25725583 25725702 25725583 ID=MsG0180001710.01.T01:exon:593;Parent=MsG0180001710.01.T01
Chr1 exon 25725893 25726072 25725893 ID=MsG0180001710.01.T01:exon:592;Parent=MsG0180001710.01.T01
Chr1 exon 25728519 25728612 25728519 ID=MsG0180001710.01.T01:exon:591;Parent=MsG0180001710.01.T01
Chr1 exon 25730380 25730537 25730380 ID=MsG0180001710.01.T01:exon:590;Parent=MsG0180001710.01.T01
Chr1 exon 25731997 25732062 25731997 ID=MsG0180001710.01.T01:exon:589;Parent=MsG0180001710.01.T01
Chr1 CDS 25731997 25732062 25731997 ID=MsG0180001710.01.T01:cds;Parent=MsG0180001710.01.T01
Chr1 CDS 25730380 25730537 25730380 ID=MsG0180001710.01.T01:cds;Parent=MsG0180001710.01.T01
Chr1 CDS 25728519 25728612 25728519 ID=MsG0180001710.01.T01:cds;Parent=MsG0180001710.01.T01
Chr1 CDS 25725893 25726072 25725893 ID=MsG0180001710.01.T01:cds;Parent=MsG0180001710.01.T01
Chr1 CDS 25725583 25725702 25725583 ID=MsG0180001710.01.T01:cds;Parent=MsG0180001710.01.T01
Chr1 CDS 25724711 25724844 25724711 ID=MsG0180001710.01.T01:cds;Parent=MsG0180001710.01.T01
Chr1 CDS 25724514 25724589 25724514 ID=MsG0180001710.01.T01:cds;Parent=MsG0180001710.01.T01
Chr1 three_prime_UTR 25724194 25724513 25724194 ID=MsG0180001710.01.T01:three_prime_utr;Parent=MsG0180001710.01.T01
Gene Sequence

>MsG0180001710.01.T01

ATGGAAAGAGTATGGCTGAGAATATATGTTACTTTTACCAAGCCAGACCCACTTGAATGTACTGCGAAGATCATCGATGGCAGAAACAAAAGAAGTAACAATTCTGAGATATCTTTGAAGGATCAAGGTAACGAGTTTTTCAAGTCAGGAAAGTATCTCAAAGCTGCTGCACTCTATACTCAAGCCATCAAAAGGACCCTTCAAATCCCACACTTTTTAGGTAGTAATCGTGCTGCAGCATTGCTACAATTGGACAAGCTTAACAAAGCTCTTGATGATGCTGAAATGACAATTAAATTAAAACCCGAATGGGAAAAGTCTGAAAAGTATGGATCTGAAGAAAGCTGGAAAGACATGTTCTCATTCCTCGTCGAGACCATGGAGACTGCTGTAAAATCATGGCATGAAACTTCTTCAGTGGATGCTAGAGTTTACTTTCTTCCTGATAAGGAAAAGACGCAGACCGATAAGTATCCCCCAATTGTGAATATTGATAAGGCCTTTGAGTCACCAGAAACACACAGCAGCTGTTTTCCATTTCTTAGGCAGTATGCCGAGGAGTCTTTTTCAAGGGCAGCCTGCTTAGTGGCTGCCAAAAACATCATTGCTTATCCACAGGTCTGGAAAGGCCAAGGATCAAGGAAATGGAAGCATGCACAGAATGATGGTTTCTTTGTTCAATTTGAGTCTCCTTCCGTGCGAAAATTGTGGTTTATTCCCAGTTCAAATGAAAAGGGACAGATACTGTGCAGGGATCCAGAAATTTTGGACGTTGGCGCTCATGAAGTTGTTCCTCGCTTGTTCAAAGAAAAGACCTCCCAATCTTAA
Protein sequence

>MsG0180001710.01.T01

MERVWLRIYVTFTKPDPLECTAKIIDGRNKRSNNSEISLKDQGNEFFKSGKYLKAAALYTQAIKRTLQIPHFLGSNRAAALLQLDKLNKALDDAEMTIKLKPEWEKSEKYGSEESWKDMFSFLVETMETAVKSWHETSSVDARVYFLPDKEKTQTDKYPPIVNIDKAFESPETHSSCFPFLRQYAEESFSRAACLVAAKNIIAYPQVWKGQGSRKWKHAQNDGFFVQFESPSVRKLWFIPSSNEKGQILCRDPEILDVGAHEVVPRLFKEKTSQS*