Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001906.01.T01 | RHN78727.1 | 98.345 | 423 | 7 | 0 | 1 | 423 | 79 | 501 | 0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001906.01.T01 | O23024 | 75.65 | 423 | 100 | 2 | 4 | 423 | 15 | 437 | 0 | 675 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001906.01.T01 | A0A396JVJ7 | 98.345 | 423 | 7 | 0 | 1 | 423 | 79 | 501 | 0.0 | 867 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180003762.01 | MsG0180001906.01 | PPI |
| MsG0780040831.01 | MsG0180001906.01 | PPI |
| MsG0380017591.01 | MsG0180001906.01 | PPI |
| MsG0180001906.01 | MsG0580025734.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001906.01.T01 | MTR_1g046230 | 98.345 | 423 | 7 | 0 | 1 | 423 | 1 | 423 | 0.0 | 862 |
| MsG0180001906.01.T01 | MTR_7g099330 | 72.170 | 424 | 109 | 2 | 1 | 423 | 1 | 416 | 0.0 | 633 |
| MsG0180001906.01.T01 | MTR_1g069275 | 71.875 | 416 | 112 | 2 | 9 | 423 | 10 | 421 | 0.0 | 617 |
| MsG0180001906.01.T01 | MTR_1g008380 | 60.051 | 393 | 153 | 2 | 16 | 407 | 34 | 423 | 9.16e-177 | 500 |
| MsG0180001906.01.T01 | MTR_6g086870 | 58.961 | 385 | 156 | 2 | 20 | 402 | 16 | 400 | 1.07e-174 | 494 |
| MsG0180001906.01.T01 | MTR_1g011630 | 57.732 | 388 | 158 | 1 | 15 | 402 | 7 | 388 | 1.31e-173 | 491 |
| MsG0180001906.01.T01 | MTR_3g109520 | 59.640 | 389 | 154 | 2 | 19 | 406 | 34 | 420 | 5.57e-172 | 488 |
| MsG0180001906.01.T01 | MTR_7g099160 | 71.471 | 333 | 86 | 2 | 92 | 423 | 213 | 537 | 7.09e-171 | 489 |
| MsG0180001906.01.T01 | MTR_7g107710 | 47.074 | 376 | 190 | 5 | 25 | 398 | 7 | 375 | 1.20e-117 | 348 |
| MsG0180001906.01.T01 | MTR_5g033260 | 44.792 | 384 | 201 | 6 | 25 | 405 | 7 | 382 | 1.02e-114 | 341 |
| MsG0180001906.01.T01 | MTR_7g107690 | 44.000 | 375 | 201 | 4 | 25 | 397 | 9 | 376 | 3.57e-114 | 339 |
| MsG0180001906.01.T01 | MTR_8g432640 | 44.974 | 378 | 199 | 5 | 25 | 400 | 7 | 377 | 1.67e-113 | 338 |
| MsG0180001906.01.T01 | MTR_3g088945 | 42.328 | 378 | 205 | 5 | 25 | 398 | 8 | 376 | 3.02e-108 | 325 |
| MsG0180001906.01.T01 | MTR_3g088925 | 42.063 | 378 | 206 | 5 | 25 | 398 | 8 | 376 | 6.78e-108 | 324 |
| MsG0180001906.01.T01 | MTR_3g088955 | 42.063 | 378 | 206 | 5 | 25 | 398 | 8 | 376 | 1.21e-106 | 321 |
| MsG0180001906.01.T01 | MTR_4g051642 | 42.857 | 378 | 202 | 6 | 25 | 398 | 8 | 375 | 1.79e-106 | 320 |
| MsG0180001906.01.T01 | MTR_3g096030 | 38.764 | 178 | 83 | 3 | 25 | 202 | 7 | 158 | 1.12e-34 | 126 |
| MsG0180001906.01.T01 | MTR_2g450310 | 27.415 | 383 | 199 | 21 | 26 | 342 | 7 | 376 | 3.70e-15 | 77.8 |
| MsG0180001906.01.T01 | MTR_2g450510 | 25.397 | 378 | 215 | 16 | 25 | 342 | 6 | 376 | 1.49e-12 | 69.7 |
| MsG0180001906.01.T01 | MTR_2g044140 | 25.916 | 382 | 219 | 15 | 16 | 339 | 6 | 381 | 4.89e-12 | 68.2 |
| MsG0180001906.01.T01 | MTR_2g020630 | 26.984 | 252 | 143 | 11 | 16 | 230 | 6 | 253 | 2.38e-11 | 65.9 |
| MsG0180001906.01.T01 | MTR_3g437580 | 22.917 | 240 | 142 | 6 | 26 | 232 | 15 | 244 | 3.39e-11 | 64.7 |
| MsG0180001906.01.T01 | MTR_3g437580 | 22.917 | 240 | 142 | 6 | 26 | 232 | 15 | 244 | 6.57e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001906.01.T01 | AT1G04610 | 75.650 | 423 | 100 | 2 | 4 | 423 | 15 | 437 | 0.0 | 675 |
| MsG0180001906.01.T01 | AT2G33230 | 73.634 | 421 | 109 | 2 | 4 | 423 | 12 | 431 | 0.0 | 632 |
| MsG0180001906.01.T01 | AT4G28720 | 69.007 | 413 | 127 | 1 | 11 | 422 | 12 | 424 | 0.0 | 603 |
| MsG0180001906.01.T01 | AT5G43890 | 70.343 | 408 | 119 | 2 | 15 | 421 | 16 | 422 | 0.0 | 600 |
| MsG0180001906.01.T01 | AT1G04180 | 68.447 | 412 | 125 | 3 | 11 | 421 | 12 | 419 | 0.0 | 584 |
| MsG0180001906.01.T01 | AT5G25620 | 59.194 | 397 | 155 | 3 | 16 | 409 | 24 | 416 | 9.29e-173 | 490 |
| MsG0180001906.01.T01 | AT5G25620 | 58.191 | 409 | 163 | 4 | 17 | 422 | 25 | 428 | 5.24e-172 | 489 |
| MsG0180001906.01.T01 | AT5G11320 | 59.173 | 387 | 150 | 2 | 19 | 405 | 12 | 390 | 9.86e-169 | 479 |
| MsG0180001906.01.T01 | AT4G13260 | 55.665 | 406 | 170 | 3 | 15 | 419 | 19 | 415 | 1.72e-168 | 479 |
| MsG0180001906.01.T01 | AT4G32540 | 51.889 | 397 | 183 | 2 | 19 | 414 | 16 | 405 | 1.74e-160 | 459 |
| MsG0180001906.01.T01 | AT4G32540 | 51.629 | 399 | 183 | 3 | 19 | 414 | 16 | 407 | 5.45e-159 | 455 |
| MsG0180001906.01.T01 | AT5G11320 | 58.485 | 330 | 129 | 2 | 19 | 348 | 12 | 333 | 6.50e-137 | 396 |
| MsG0180001906.01.T01 | AT4G13260 | 57.823 | 294 | 122 | 1 | 15 | 308 | 19 | 310 | 1.20e-128 | 374 |
| MsG0180001906.01.T01 | AT1G21430 | 46.277 | 376 | 190 | 6 | 25 | 397 | 10 | 376 | 1.79e-116 | 346 |
| MsG0180001906.01.T01 | AT4G13260 | 52.761 | 326 | 136 | 4 | 95 | 419 | 4 | 312 | 1.17e-114 | 338 |
| MsG0180001906.01.T01 | AT1G48910 | 44.000 | 375 | 201 | 5 | 25 | 397 | 6 | 373 | 2.50e-113 | 337 |
| MsG0180001906.01.T01 | AT1G19250 | 25.134 | 374 | 214 | 15 | 25 | 339 | 14 | 380 | 2.40e-16 | 81.6 |
| MsG0180001906.01.T01 | AT5G45180 | 26.346 | 353 | 196 | 14 | 25 | 339 | 14 | 340 | 2.87e-16 | 80.9 |
| MsG0180001906.01.T01 | AT1G62620 | 23.673 | 245 | 145 | 7 | 26 | 237 | 15 | 250 | 3.02e-11 | 65.1 |
| MsG0180001906.01.T01 | AT1G62560 | 23.721 | 215 | 131 | 6 | 26 | 211 | 15 | 225 | 6.12e-11 | 64.3 |
| MsG0180001906.01.T01 | AT1G62620 | 23.673 | 245 | 145 | 7 | 26 | 237 | 15 | 250 | 7.48e-11 | 64.3 |
| MsG0180001906.01.T01 | AT1G62560 | 23.504 | 234 | 138 | 7 | 26 | 230 | 15 | 236 | 7.82e-11 | 64.3 |
Find 91 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTCTGACTCGTGTGATTT+TGG | 0.152127 | 1:+29139219 | MsG0180001906.01.T01:CDS |
| GTTGTTGGCTGTGGAAATTC+TGG | 0.197319 | 1:+29138910 | MsG0180001906.01.T01:CDS |
| TTCGAAGGTTTGGCTGATTT+TGG | 0.199341 | 1:+29138823 | MsG0180001906.01.T01:CDS |
| CCATTGATGGATTTGCATTA+TGG | 0.206435 | 1:-29138960 | None:intergenic |
| CCATTTGGAAATGGATCTTT+TGG | 0.223238 | 1:-29139698 | None:intergenic |
| AGCACTGTTTCATTGAAATT+TGG | 0.226962 | 1:-29138658 | None:intergenic |
| TTTACAAGGAGAGGTCTTTC+TGG | 0.245828 | 1:+29139755 | MsG0180001906.01.T01:CDS |
| TGATGAAAAGGTTGCCAATT+TGG | 0.246817 | 1:+29139176 | MsG0180001906.01.T01:CDS |
| GTGTTACCAAGGGAAATATT+TGG | 0.264585 | 1:+29139124 | MsG0180001906.01.T01:CDS |
| GTGATCAGGGAAAGGAAAAT+TGG | 0.273886 | 1:-29138563 | None:intergenic |
| TCGAAAAGTATGGTCTTAAA+AGG | 0.282601 | 1:+29139248 | MsG0180001906.01.T01:CDS |
| AGGTCTTTCTGGTGCTTCAT+TGG | 0.310265 | 1:+29139766 | MsG0180001906.01.T01:CDS |
| CCTTTCCATCCATTTGGAAA+TGG | 0.337340 | 1:-29139707 | None:intergenic |
| GGTAGTTGACACAATTGTTT+AGG | 0.340912 | 1:-29138541 | None:intergenic |
| TTAGAGCTTAAGAACACTTC+AGG | 0.349301 | 1:+29139286 | MsG0180001906.01.T01:CDS |
| ATCTTATCGACCATCCAAAT+TGG | 0.356347 | 1:-29139190 | None:intergenic |
| GCATTTCCTTTCCATCCATT+TGG | 0.357379 | 1:-29139713 | None:intergenic |
| CTCAAGACATTGCTAAAAGT+TGG | 0.362798 | 1:+29139804 | MsG0180001906.01.T01:CDS |
| GGTCAAATTAAAGTTGTTCC+TGG | 0.367198 | 1:+29139355 | MsG0180001906.01.T01:CDS |
| GAGCTTCTAACAACCATTGA+TGG | 0.371002 | 1:-29138973 | None:intergenic |
| ATGATGAAACCTTTGGTCTA+TGG | 0.372822 | 1:+29138692 | MsG0180001906.01.T01:CDS |
| CAATGTACCATCTTGGCTTA+AGG | 0.373912 | 1:+29139468 | MsG0180001906.01.T01:CDS |
| AGCAGTTGCAGCTTGTCTTA+AGG | 0.375176 | 1:+29138426 | MsG0180001906.01.T01:CDS |
| TTGGGGAATGTCGAAAAGTA+TGG | 0.384596 | 1:+29139238 | MsG0180001906.01.T01:CDS |
| GATTCTGTTGTTCTTGCTAC+TGG | 0.392350 | 1:+29139436 | MsG0180001906.01.T01:CDS |
| TGAGCCGGAGTTCGAAGGTT+TGG | 0.396120 | 1:+29138813 | MsG0180001906.01.T01:CDS |
| GGACGACGAAAGGAACATTT+TGG | 0.398512 | 1:-29138450 | None:intergenic |
| ATAGTTGGAGCTGGTCCATC+AGG | 0.401112 | 1:+29138400 | MsG0180001906.01.T01:CDS |
| AAGACACCAGTATTAGATAT+TGG | 0.401231 | 1:+29139310 | MsG0180001906.01.T01:CDS |
| GGGAAAGTTGAACTTGTTGA+TGG | 0.406344 | 1:+29139397 | MsG0180001906.01.T01:CDS |
| GGTTGCTACCGGTGAAAATT+CGG | 0.407888 | 1:+29138783 | MsG0180001906.01.T01:CDS |
| TGGTCTTAAAAGGCCATGTA+TGG | 0.410967 | 1:+29139258 | MsG0180001906.01.T01:CDS |
| GGGTATTCAGGGAAGTGATC+AGG | 0.411727 | 1:-29138577 | None:intergenic |
| TATGGAGGATTAAGAGCAAT+AGG | 0.415166 | 1:+29138710 | MsG0180001906.01.T01:CDS |
| GGACCAGCTCCAACTATAAC+AGG | 0.417852 | 1:-29138394 | None:intergenic |
| TTGAAGTTGAGTATATTTGT+AGG | 0.421139 | 1:+29138752 | MsG0180001906.01.T01:CDS |
| CATGCTTGTGACTATAAATC+TGG | 0.421528 | 1:+29138859 | MsG0180001906.01.T01:CDS |
| AAACAGTGGCTGCACGTCAT+AGG | 0.425092 | 1:+29139852 | MsG0180001906.01.T01:CDS |
| GCTAAGTATGATGAAACCTT+TGG | 0.428804 | 1:+29138685 | MsG0180001906.01.T01:CDS |
| AGTGCTCCAATATCTAATAC+TGG | 0.440252 | 1:-29139316 | None:intergenic |
| GTGAATGGACCTGTTATAGT+TGG | 0.443384 | 1:+29138385 | MsG0180001906.01.T01:CDS |
| ATTTGGAAAATCTACTTATG+AGG | 0.443961 | 1:+29139141 | MsG0180001906.01.T01:CDS |
| AATGTTCTTGTTGTTGGCTG+TGG | 0.445856 | 1:+29138901 | MsG0180001906.01.T01:CDS |
| TGATCAGGGAAAGGAAAATT+GGG | 0.452224 | 1:-29138562 | None:intergenic |
| CAATGCAGTTAGCTCTTTCG+AGG | 0.466628 | 1:-29138471 | None:intergenic |
| CTAACTGCATTGCTTCCCTT+TGG | 0.470550 | 1:+29138482 | MsG0180001906.01.T01:CDS |
| GAAGTGTTCTTAAGCTCTAA+AGG | 0.482235 | 1:-29139283 | None:intergenic |
| ATAGAAGCAATGTACCATCT+TGG | 0.483598 | 1:+29139461 | MsG0180001906.01.T01:CDS |
| CCAAAAGATCCATTTCCAAA+TGG | 0.490262 | 1:+29139698 | MsG0180001906.01.T01:CDS |
| TAGCTGTTATGTTGATGAAA+AGG | 0.494702 | 1:+29139164 | MsG0180001906.01.T01:CDS |
| TAGAGCTTAAGAACACTTCA+GGG | 0.496144 | 1:+29139287 | MsG0180001906.01.T01:CDS |
| CCATAATGCAAATCCATCAA+TGG | 0.497074 | 1:+29138960 | MsG0180001906.01.T01:CDS |
| AACCGTTGCATATTAGTGAA+TGG | 0.502495 | 1:+29138370 | MsG0180001906.01.T01:CDS |
| GGGTCGAATGTTTGAGACAT+TGG | 0.515170 | 1:-29138331 | None:intergenic |
| AAGATCCATTTCCAAATGGA+TGG | 0.517361 | 1:+29139702 | MsG0180001906.01.T01:CDS |
| AGGTGGCTTGTGGTTGCTAC+CGG | 0.524010 | 1:+29138772 | MsG0180001906.01.T01:CDS |
| GCACTTGAGAAGGTTAGATC+TGG | 0.524284 | 1:+29139334 | MsG0180001906.01.T01:CDS |
| CCATTTCCAAATGGATGGAA+AGG | 0.525251 | 1:+29139707 | MsG0180001906.01.T01:CDS |
| ATCAATGGTTGTTAGAAGCT+CGG | 0.527251 | 1:+29138975 | MsG0180001906.01.T01:CDS |
| AAATCTGGTGTGAATCATAG+TGG | 0.531964 | 1:+29138874 | MsG0180001906.01.T01:CDS |
| AGCTCTAAAGGTCCCATACA+TGG | 0.538443 | 1:-29139271 | None:intergenic |
| ATGGTCGATAAGATATTGCT+TGG | 0.541229 | 1:+29139199 | MsG0180001906.01.T01:CDS |
| AATGCTGGTCTATATGCTGT+TGG | 0.542155 | 1:+29139731 | MsG0180001906.01.T01:CDS |
| CGTAGGTTCGATTCTGCCAA+AGG | 0.545565 | 1:-29138498 | None:intergenic |
| TCAGCCAAACCTTCGAACTC+CGG | 0.546694 | 1:-29138817 | None:intergenic |
| AATGGATGGAAAGGAAATGC+TGG | 0.546827 | 1:+29139716 | MsG0180001906.01.T01:CDS |
| AAACTAACCTTAAGCCAAGA+TGG | 0.557267 | 1:-29139475 | None:intergenic |
| GGACCTGTTATAGTTGGAGC+TGG | 0.559689 | 1:+29138391 | MsG0180001906.01.T01:CDS |
| TATATGCTGTTGGATTTACA+AGG | 0.562777 | 1:+29139741 | MsG0180001906.01.T01:CDS |
| GGTATTCAGGGAAGTGATCA+GGG | 0.569347 | 1:-29138576 | None:intergenic |
| GCTCTTTCGAGGACGACGAA+AGG | 0.572773 | 1:-29138460 | None:intergenic |
| AAAGTTGAGCCGGAGTTCGA+AGG | 0.573012 | 1:+29138808 | MsG0180001906.01.T01:CDS |
| ATGAAACCTTTGGTCTATGG+AGG | 0.575369 | 1:+29138695 | MsG0180001906.01.T01:CDS |
| ATGAAGTTTAAGACGATCGT+AGG | 0.577864 | 1:-29138515 | None:intergenic |
| CTTAATCCTCCATAGACCAA+AGG | 0.582115 | 1:-29138701 | None:intergenic |
| AGATATTGGAGCACTTGAGA+AGG | 0.585530 | 1:+29139324 | MsG0180001906.01.T01:CDS |
| GCTGTTGGATTTACAAGGAG+AGG | 0.586125 | 1:+29139746 | MsG0180001906.01.T01:CDS |
| GTATATTTGTAGGTGGCTTG+TGG | 0.588469 | 1:+29138762 | MsG0180001906.01.T01:CDS |
| TCGAATGTTTGAGACATTGG+TGG | 0.588628 | 1:-29138328 | None:intergenic |
| GCTGCAACTGCTAAGCCTGA+TGG | 0.591010 | 1:-29138415 | None:intergenic |
| GGTCTTAAAAGGCCATGTAT+GGG | 0.595116 | 1:+29139259 | MsG0180001906.01.T01:CDS |
| AATAGGTTCATGTGTTACCA+AGG | 0.598175 | 1:+29139113 | MsG0180001906.01.T01:intron |
| GTAGGTTCGATTCTGCCAAA+GGG | 0.600880 | 1:-29138497 | None:intergenic |
| ATAGGTTCATGTGTTACCAA+GGG | 0.601879 | 1:+29139114 | MsG0180001906.01.T01:intron |
| AAGTTGAGTATATTTGTAGG+TGG | 0.602864 | 1:+29138755 | MsG0180001906.01.T01:CDS |
| GAAAAGGTTGCCAATTTGGA+TGG | 0.608907 | 1:+29139180 | MsG0180001906.01.T01:CDS |
| AAATTCGGAGAAAGTTGAGC+CGG | 0.610705 | 1:+29138798 | MsG0180001906.01.T01:CDS |
| GTCCATTCACTAATATGCAA+CGG | 0.611348 | 1:-29138372 | None:intergenic |
| TCAGGGAAGTGATCAGGGAA+AGG | 0.611951 | 1:-29138571 | None:intergenic |
| TGGCTGTGGAAATTCTGGCA+TGG | 0.638016 | 1:+29138915 | MsG0180001906.01.T01:CDS |
| TAAACAAAGAAAGAAAACAG+TGG | 0.722515 | 1:+29139838 | MsG0180001906.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCACAAAAAAAATAAAGA+TGG | - | Chr1:29139086-29139105 | None:intergenic | 15.0% |
| !!! | TTTTGTGATTTTTGATTAAT+AGG | + | Chr1:29139096-29139115 | MsG0180001906.01.T01:intron | 15.0% |
| !!! | GAATTAAAAGATTTTCACAA+GGG | + | Chr1:29139377-29139396 | MsG0180001906.01.T01:CDS | 20.0% |
| !!! | TTATGAACTGAAATTTTGTA+GGG | - | Chr1:29138600-29138619 | None:intergenic | 20.0% |
| ! | ATTTGGAAAATCTACTTATG+AGG | + | Chr1:29139141-29139160 | MsG0180001906.01.T01:CDS | 25.0% |
| ! | TAAACAAAGAAAGAAAACAG+TGG | + | Chr1:29139838-29139857 | MsG0180001906.01.T01:CDS | 25.0% |
| ! | TTCTATGTTATGTATTGAAC+AGG | + | Chr1:29139646-29139665 | MsG0180001906.01.T01:intron | 25.0% |
| ! | TTCTTTGTAATTATACGTGT+CGG | + | Chr1:29139507-29139526 | MsG0180001906.01.T01:intron | 25.0% |
| ! | TTGAAGTTGAGTATATTTGT+AGG | + | Chr1:29138752-29138771 | MsG0180001906.01.T01:CDS | 25.0% |
| !! | AATGAATTCTTTTCCAAAGA+TGG | + | Chr1:29139671-29139690 | MsG0180001906.01.T01:CDS | 25.0% |
| !! | CTTATGAACTGAAATTTTGT+AGG | - | Chr1:29138601-29138620 | None:intergenic | 25.0% |
| !! | GGAATTAAAAGATTTTCACA+AGG | + | Chr1:29139376-29139395 | MsG0180001906.01.T01:CDS | 25.0% |
| !!! | TGTGAAAATCTTTTAATTCC+AGG | - | Chr1:29139376-29139395 | None:intergenic | 25.0% |
| AAGACACCAGTATTAGATAT+TGG | + | Chr1:29139310-29139329 | MsG0180001906.01.T01:CDS | 30.0% | |
| AAGTTGAGTATATTTGTAGG+TGG | + | Chr1:29138755-29138774 | MsG0180001906.01.T01:CDS | 30.0% | |
| AGCACTGTTTCATTGAAATT+TGG | - | Chr1:29138661-29138680 | None:intergenic | 30.0% | |
| GACACGTATAATTACAAAGA+AGG | - | Chr1:29139508-29139527 | None:intergenic | 30.0% | |
| TATATGCTGTTGGATTTACA+AGG | + | Chr1:29139741-29139760 | MsG0180001906.01.T01:CDS | 30.0% | |
| ! | GATTTTCCAAATATTTCCCT+TGG | - | Chr1:29139133-29139152 | None:intergenic | 30.0% |
| ! | GGAAAAAATGTTCTTGTTGT+TGG | + | Chr1:29138895-29138914 | MsG0180001906.01.T01:CDS | 30.0% |
| ! | TAGCTGTTATGTTGATGAAA+AGG | + | Chr1:29139164-29139183 | MsG0180001906.01.T01:CDS | 30.0% |
| ! | TCGAAAAGTATGGTCTTAAA+AGG | + | Chr1:29139248-29139267 | MsG0180001906.01.T01:CDS | 30.0% |
| !! | GAAATTTTGTAGGGTATTCA+GGG | - | Chr1:29138591-29138610 | None:intergenic | 30.0% |
| !! | TGAAATTTTGTAGGGTATTC+AGG | - | Chr1:29138592-29138611 | None:intergenic | 30.0% |
| !!! | AGTTTTTAGCATATGATTCG+AGG | - | Chr1:29138627-29138646 | None:intergenic | 30.0% |
| AAACTAACCTTAAGCCAAGA+TGG | - | Chr1:29139478-29139497 | None:intergenic | 35.0% | |
| AAATCTGGTGTGAATCATAG+TGG | + | Chr1:29138874-29138893 | MsG0180001906.01.T01:CDS | 35.0% | |
| AACCGTTGCATATTAGTGAA+TGG | + | Chr1:29138370-29138389 | MsG0180001906.01.T01:CDS | 35.0% | |
| AAGATCCATTTCCAAATGGA+TGG | + | Chr1:29139702-29139721 | MsG0180001906.01.T01:CDS | 35.0% | |
| AATAGGTTCATGTGTTACCA+AGG | + | Chr1:29139113-29139132 | MsG0180001906.01.T01:intron | 35.0% | |
| AGTGCTCCAATATCTAATAC+TGG | - | Chr1:29139319-29139338 | None:intergenic | 35.0% | |
| ATAGAAGCAATGTACCATCT+TGG | + | Chr1:29139461-29139480 | MsG0180001906.01.T01:CDS | 35.0% | |
| ATAGGTTCATGTGTTACCAA+GGG | + | Chr1:29139114-29139133 | MsG0180001906.01.T01:intron | 35.0% | |
| ATCAATGGTTGTTAGAAGCT+CGG | + | Chr1:29138975-29138994 | MsG0180001906.01.T01:CDS | 35.0% | |
| ATCTTATCGACCATCCAAAT+TGG | - | Chr1:29139193-29139212 | None:intergenic | 35.0% | |
| ATGATGAAACCTTTGGTCTA+TGG | + | Chr1:29138692-29138711 | MsG0180001906.01.T01:CDS | 35.0% | |
| ATGGTCGATAAGATATTGCT+TGG | + | Chr1:29139199-29139218 | MsG0180001906.01.T01:CDS | 35.0% | |
| CATGCTTGTGACTATAAATC+TGG | + | Chr1:29138859-29138878 | MsG0180001906.01.T01:CDS | 35.0% | |
| CCAAAAGATCCATTTCCAAA+TGG | + | Chr1:29139698-29139717 | MsG0180001906.01.T01:CDS | 35.0% | |
| CCATAATGCAAATCCATCAA+TGG | + | Chr1:29138960-29138979 | MsG0180001906.01.T01:CDS | 35.0% | |
| CTCAAGACATTGCTAAAAGT+TGG | + | Chr1:29139804-29139823 | MsG0180001906.01.T01:CDS | 35.0% | |
| GCTAAGTATGATGAAACCTT+TGG | + | Chr1:29138685-29138704 | MsG0180001906.01.T01:CDS | 35.0% | |
| GGTAGTTGACACAATTGTTT+AGG | - | Chr1:29138544-29138563 | None:intergenic | 35.0% | |
| GGTCAAATTAAAGTTGTTCC+TGG | + | Chr1:29139355-29139374 | MsG0180001906.01.T01:CDS | 35.0% | |
| GTCCATTCACTAATATGCAA+CGG | - | Chr1:29138375-29138394 | None:intergenic | 35.0% | |
| GTGTTACCAAGGGAAATATT+TGG | + | Chr1:29139124-29139143 | MsG0180001906.01.T01:CDS | 35.0% | |
| TAGAGCTTAAGAACACTTCA+GGG | + | Chr1:29139287-29139306 | MsG0180001906.01.T01:CDS | 35.0% | |
| TATGGAGGATTAAGAGCAAT+AGG | + | Chr1:29138710-29138729 | MsG0180001906.01.T01:CDS | 35.0% | |
| TGATCAGGGAAAGGAAAATT+GGG | - | Chr1:29138565-29138584 | None:intergenic | 35.0% | |
| TGATGAAAAGGTTGCCAATT+TGG | + | Chr1:29139176-29139195 | MsG0180001906.01.T01:CDS | 35.0% | |
| TTAGAGCTTAAGAACACTTC+AGG | + | Chr1:29139286-29139305 | MsG0180001906.01.T01:CDS | 35.0% | |
| ! | AACTTTCTCCGAATTTTCAC+CGG | - | Chr1:29138794-29138813 | None:intergenic | 35.0% |
| ! | ATCTTTTGGCATTCCATCTT+TGG | - | Chr1:29139687-29139706 | None:intergenic | 35.0% |
| ! | ATGAAGTTTAAGACGATCGT+AGG | - | Chr1:29138518-29138537 | None:intergenic | 35.0% |
| ! | CCATTTGGAAATGGATCTTT+TGG | - | Chr1:29139701-29139720 | None:intergenic | 35.0% |
| ! | GAAGTGTTCTTAAGCTCTAA+AGG | - | Chr1:29139286-29139305 | None:intergenic | 35.0% |
| !! | ACGGTTTTTGAGAATGTCTT+CGG | - | Chr1:29138356-29138375 | None:intergenic | 35.0% |
| !! | CCATTGATGGATTTGCATTA+TGG | - | Chr1:29138963-29138982 | None:intergenic | 35.0% |
| AAATTCGGAGAAAGTTGAGC+CGG | + | Chr1:29138798-29138817 | MsG0180001906.01.T01:CDS | 40.0% | |
| AATGGATGGAAAGGAAATGC+TGG | + | Chr1:29139716-29139735 | MsG0180001906.01.T01:CDS | 40.0% | |
| ATGAAACCTTTGGTCTATGG+AGG | + | Chr1:29138695-29138714 | MsG0180001906.01.T01:CDS | 40.0% | |
| CAATGTACCATCTTGGCTTA+AGG | + | Chr1:29139468-29139487 | MsG0180001906.01.T01:CDS | 40.0% | |
| CCATTTCCAAATGGATGGAA+AGG | + | Chr1:29139707-29139726 | MsG0180001906.01.T01:CDS | 40.0% | |
| CCTTTCCATCCATTTGGAAA+TGG | - | Chr1:29139710-29139729 | None:intergenic | 40.0% | |
| CTTAATCCTCCATAGACCAA+AGG | - | Chr1:29138704-29138723 | None:intergenic | 40.0% | |
| GAAAAGGTTGCCAATTTGGA+TGG | + | Chr1:29139180-29139199 | MsG0180001906.01.T01:CDS | 40.0% | |
| GAGCTTCTAACAACCATTGA+TGG | - | Chr1:29138976-29138995 | None:intergenic | 40.0% | |
| GATTCTGTTGTTCTTGCTAC+TGG | + | Chr1:29139436-29139455 | MsG0180001906.01.T01:CDS | 40.0% | |
| GCATTTCCTTTCCATCCATT+TGG | - | Chr1:29139716-29139735 | None:intergenic | 40.0% | |
| GGTCTTAAAAGGCCATGTAT+GGG | + | Chr1:29139259-29139278 | MsG0180001906.01.T01:CDS | 40.0% | |
| GTATATTTGTAGGTGGCTTG+TGG | + | Chr1:29138762-29138781 | MsG0180001906.01.T01:CDS | 40.0% | |
| GTGAATGGACCTGTTATAGT+TGG | + | Chr1:29138385-29138404 | MsG0180001906.01.T01:CDS | 40.0% | |
| GTGATCAGGGAAAGGAAAAT+TGG | - | Chr1:29138566-29138585 | None:intergenic | 40.0% | |
| TATGAAGCACAGACACTCTT+CGG | - | Chr1:29139585-29139604 | None:intergenic | 40.0% | |
| TCTTCGGATTAAATGTGTCC+TGG | - | Chr1:29139569-29139588 | None:intergenic | 40.0% | |
| TTGGGGAATGTCGAAAAGTA+TGG | + | Chr1:29139238-29139257 | MsG0180001906.01.T01:CDS | 40.0% | |
| TTTACAAGGAGAGGTCTTTC+TGG | + | Chr1:29139755-29139774 | MsG0180001906.01.T01:CDS | 40.0% | |
| ! | AATGCTGGTCTATATGCTGT+TGG | + | Chr1:29139731-29139750 | MsG0180001906.01.T01:CDS | 40.0% |
| ! | AGATATTGGAGCACTTGAGA+AGG | + | Chr1:29139324-29139343 | MsG0180001906.01.T01:CDS | 40.0% |
| ! | TCGAATGTTTGAGACATTGG+TGG | - | Chr1:29138331-29138350 | None:intergenic | 40.0% |
| ! | TGGTCTTAAAAGGCCATGTA+TGG | + | Chr1:29139258-29139277 | MsG0180001906.01.T01:CDS | 40.0% |
| !! | AATGTTCTTGTTGTTGGCTG+TGG | + | Chr1:29138901-29138920 | MsG0180001906.01.T01:CDS | 40.0% |
| !! | CGGTTTTTGAGAATGTCTTC+GGG | - | Chr1:29138355-29138374 | None:intergenic | 40.0% |
| !! | GGGAAAGTTGAACTTGTTGA+TGG | + | Chr1:29139397-29139416 | MsG0180001906.01.T01:CDS | 40.0% |
| !! | GGTTTTTGAGAATGTCTTCG+GGG | - | Chr1:29138354-29138373 | None:intergenic | 40.0% |
| !! | TTCGAAGGTTTGGCTGATTT+TGG | + | Chr1:29138823-29138842 | MsG0180001906.01.T01:CDS | 40.0% |
| AGCAGTTGCAGCTTGTCTTA+AGG | + | Chr1:29138426-29138445 | MsG0180001906.01.T01:CDS | 45.0% | |
| CTAACTGCATTGCTTCCCTT+TGG | + | Chr1:29138482-29138501 | MsG0180001906.01.T01:CDS | 45.0% | |
| GCACTTGAGAAGGTTAGATC+TGG | + | Chr1:29139334-29139353 | MsG0180001906.01.T01:CDS | 45.0% | |
| GCTGTTGGATTTACAAGGAG+AGG | + | Chr1:29139746-29139765 | MsG0180001906.01.T01:CDS | 45.0% | |
| GGTATTCAGGGAAGTGATCA+GGG | - | Chr1:29138579-29138598 | None:intergenic | 45.0% | |
| GGTTGCTACCGGTGAAAATT+CGG | + | Chr1:29138783-29138802 | MsG0180001906.01.T01:CDS | 45.0% | |
| GTAGGTTCGATTCTGCCAAA+GGG | - | Chr1:29138500-29138519 | None:intergenic | 45.0% | |
| ! | AGGTCTTTCTGGTGCTTCAT+TGG | + | Chr1:29139766-29139785 | MsG0180001906.01.T01:CDS | 45.0% |
| ! | CAATGCAGTTAGCTCTTTCG+AGG | - | Chr1:29138474-29138493 | None:intergenic | 45.0% |
| ! | GGACGACGAAAGGAACATTT+TGG | - | Chr1:29138453-29138472 | None:intergenic | 45.0% |
| ! | GGGTCGAATGTTTGAGACAT+TGG | - | Chr1:29138334-29138353 | None:intergenic | 45.0% |
| ! | GTTGTTGGCTGTGGAAATTC+TGG | + | Chr1:29138910-29138929 | MsG0180001906.01.T01:CDS | 45.0% |
| !! | AGCTCTAAAGGTCCCATACA+TGG | - | Chr1:29139274-29139293 | None:intergenic | 45.0% |
| !! | GAAGGTTTGGCTGATTTTGG+TGG | + | Chr1:29138826-29138845 | MsG0180001906.01.T01:CDS | 45.0% |
| !! | GGTCTGACTCGTGTGATTTT+GGG | + | Chr1:29139220-29139239 | MsG0180001906.01.T01:CDS | 45.0% |
| !! | GTCTGACTCGTGTGATTTTG+GGG | + | Chr1:29139221-29139240 | MsG0180001906.01.T01:CDS | 45.0% |
| !! | TATACGTGTCGGTGTTGTGT+CGG | + | Chr1:29139518-29139537 | MsG0180001906.01.T01:intron | 45.0% |
| !! | TGGTCTGACTCGTGTGATTT+TGG | + | Chr1:29139219-29139238 | MsG0180001906.01.T01:CDS | 45.0% |
| AAACAGTGGCTGCACGTCAT+AGG | + | Chr1:29139852-29139871 | MsG0180001906.01.T01:CDS | 50.0% | |
| AAAGTTGAGCCGGAGTTCGA+AGG | + | Chr1:29138808-29138827 | MsG0180001906.01.T01:CDS | 50.0% | |
| ATAGTTGGAGCTGGTCCATC+AGG | + | Chr1:29138400-29138419 | MsG0180001906.01.T01:CDS | 50.0% | |
| CGTAGGTTCGATTCTGCCAA+AGG | - | Chr1:29138501-29138520 | None:intergenic | 50.0% | |
| GGACCAGCTCCAACTATAAC+AGG | - | Chr1:29138397-29138416 | None:intergenic | 50.0% | |
| GGACCTGTTATAGTTGGAGC+TGG | + | Chr1:29138391-29138410 | MsG0180001906.01.T01:CDS | 50.0% | |
| GGGTATTCAGGGAAGTGATC+AGG | - | Chr1:29138580-29138599 | None:intergenic | 50.0% | |
| TCAGCCAAACCTTCGAACTC+CGG | - | Chr1:29138820-29138839 | None:intergenic | 50.0% | |
| TCAGGGAAGTGATCAGGGAA+AGG | - | Chr1:29138574-29138593 | None:intergenic | 50.0% | |
| TGGCTGTGGAAATTCTGGCA+TGG | + | Chr1:29138915-29138934 | MsG0180001906.01.T01:CDS | 50.0% | |
| CACGACACATGTCTGACACC+AGG | + | Chr1:29139548-29139567 | MsG0180001906.01.T01:intron | 55.0% | |
| GCTCTTTCGAGGACGACGAA+AGG | - | Chr1:29138463-29138482 | None:intergenic | 55.0% | |
| GCTGCAACTGCTAAGCCTGA+TGG | - | Chr1:29138418-29138437 | None:intergenic | 55.0% | |
| TGAGCCGGAGTTCGAAGGTT+TGG | + | Chr1:29138813-29138832 | MsG0180001906.01.T01:CDS | 55.0% | |
| ! | AGGTGGCTTGTGGTTGCTAC+CGG | + | Chr1:29138772-29138791 | MsG0180001906.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 29138325 | 29139895 | 29138325 | ID=MsG0180001906.01;Name=MsG0180001906.01 |
| Chr1 | mRNA | 29138325 | 29139895 | 29138325 | ID=MsG0180001906.01.T01;Parent=MsG0180001906.01;Name=MsG0180001906.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|423 |
| Chr1 | exon | 29138325 | 29138996 | 29138325 | ID=MsG0180001906.01.T01:exon:18916;Parent=MsG0180001906.01.T01 |
| Chr1 | exon | 29139118 | 29139489 | 29139118 | ID=MsG0180001906.01.T01:exon:18917;Parent=MsG0180001906.01.T01 |
| Chr1 | exon | 29139668 | 29139895 | 29139668 | ID=MsG0180001906.01.T01:exon:18918;Parent=MsG0180001906.01.T01 |
| Chr1 | CDS | 29138325 | 29138996 | 29138325 | ID=MsG0180001906.01.T01:cds;Parent=MsG0180001906.01.T01 |
| Chr1 | CDS | 29139118 | 29139489 | 29139118 | ID=MsG0180001906.01.T01:cds;Parent=MsG0180001906.01.T01 |
| Chr1 | CDS | 29139668 | 29139895 | 29139668 | ID=MsG0180001906.01.T01:cds;Parent=MsG0180001906.01.T01 |
| Gene Sequence |
| Protein sequence |
