AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017591.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017591.01.T01 MTR_3g109520 96.706 425 12 1 1 425 1 423 0.0 847
MsG0380017591.01.T01 MTR_1g008380 76.887 424 96 2 1 423 1 423 0.0 660
MsG0380017591.01.T01 MTR_6g086870 67.513 394 123 2 24 414 5 396 0.0 558
MsG0380017591.01.T01 MTR_1g069275 61.000 400 152 3 25 423 9 405 0.0 511
MsG0380017591.01.T01 MTR_7g099330 59.949 392 149 3 33 423 16 400 3.41e-174 493
MsG0380017591.01.T01 MTR_1g046230 59.391 394 157 2 32 423 15 407 4.46e-173 491
MsG0380017591.01.T01 MTR_1g011630 59.788 378 147 3 36 413 11 383 1.05e-170 484
MsG0380017591.01.T01 MTR_7g099160 57.595 316 126 3 109 423 213 521 9.22e-126 375
MsG0380017591.01.T01 MTR_7g107690 44.974 378 202 2 42 418 9 381 3.13e-120 355
MsG0380017591.01.T01 MTR_8g432640 45.845 373 196 2 42 413 7 374 3.41e-120 355
MsG0380017591.01.T01 MTR_7g107710 46.354 384 198 4 42 423 7 384 1.04e-118 351
MsG0380017591.01.T01 MTR_5g033260 45.576 373 197 2 42 413 7 374 1.48e-118 351
MsG0380017591.01.T01 MTR_3g088925 43.636 385 211 2 42 425 8 387 3.01e-115 343
MsG0380017591.01.T01 MTR_3g088945 43.377 385 212 2 42 425 8 387 2.12e-114 340
MsG0380017591.01.T01 MTR_3g088955 43.636 385 211 2 42 425 8 387 1.14e-113 339
MsG0380017591.01.T01 MTR_4g051642 43.421 380 208 3 42 420 8 381 4.51e-112 335
MsG0380017591.01.T01 MTR_3g096030 39.205 176 83 1 42 217 7 158 1.97e-39 139
MsG0380017591.01.T01 MTR_3g437580 25.769 260 147 7 43 267 15 263 4.04e-17 82.8
MsG0380017591.01.T01 MTR_8g037880 25.943 212 124 6 43 226 6 212 5.17e-17 83.2
MsG0380017591.01.T01 MTR_8g037910 25.238 210 127 4 43 226 6 211 5.56e-17 80.9
MsG0380017591.01.T01 MTR_3g437580 25.000 240 135 6 43 247 15 244 8.28e-17 82.4
MsG0380017591.01.T01 MTR_8g037910 25.238 210 127 4 43 226 6 211 8.78e-17 81.3
MsG0380017591.01.T01 MTR_8g037910 25.238 210 127 4 43 226 6 211 2.01e-16 81.3
MsG0380017591.01.T01 MTR_2g450310 28.800 250 132 13 43 251 7 251 7.58e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017591.01.T01 AT5G25620 68.471 425 119 4 1 422 1 413 0.0 590
MsG0380017591.01.T01 AT5G25620 68.471 425 119 4 1 422 1 413 0.0 589
MsG0380017591.01.T01 AT4G13260 65.770 409 128 1 7 415 6 402 0.0 557
MsG0380017591.01.T01 AT4G28720 58.706 402 162 3 25 423 9 409 1.18e-176 500
MsG0380017591.01.T01 AT1G04610 57.357 401 167 2 26 423 22 421 6.91e-172 488
MsG0380017591.01.T01 AT1G04180 60.560 393 151 4 31 422 15 404 1.64e-171 487
MsG0380017591.01.T01 AT5G43890 59.750 400 157 4 27 423 10 408 4.91e-171 486
MsG0380017591.01.T01 AT5G11320 59.791 383 147 2 31 413 7 382 1.44e-170 484
MsG0380017591.01.T01 AT2G33230 60.660 394 150 2 33 423 24 415 2.32e-170 484
MsG0380017591.01.T01 AT4G32540 56.061 396 165 4 19 413 1 388 1.05e-162 464
MsG0380017591.01.T01 AT4G32540 56.030 398 164 5 19 413 1 390 4.05e-161 460
MsG0380017591.01.T01 AT4G13260 64.780 318 100 1 7 324 6 311 5.04e-148 423
MsG0380017591.01.T01 AT5G11320 59.760 333 128 1 31 363 7 333 2.62e-147 423
MsG0380017591.01.T01 AT4G13260 68.493 292 92 0 124 415 8 299 1.88e-142 409
MsG0380017591.01.T01 AT1G21430 49.202 376 180 5 42 414 10 377 1.08e-124 367
MsG0380017591.01.T01 AT1G48910 45.358 377 200 2 42 417 6 377 2.29e-120 355
MsG0380017591.01.T01 AT5G07800 26.840 231 135 6 30 226 5 235 1.67e-17 84.7
MsG0380017591.01.T01 AT5G61290 28.326 233 122 8 43 234 18 246 2.89e-17 84.0
MsG0380017591.01.T01 AT1G12140 27.586 261 144 8 33 259 5 254 1.50e-14 75.9
MsG0380017591.01.T01 AT1G12140 27.586 261 144 8 33 259 5 254 1.50e-14 75.9
MsG0380017591.01.T01 AT1G65860 27.103 214 122 7 43 226 15 224 7.44e-14 73.6
MsG0380017591.01.T01 AT1G62620 24.766 214 131 5 43 226 15 228 2.25e-13 71.6
MsG0380017591.01.T01 AT1G63370 24.299 214 132 5 43 226 15 228 5.12e-13 70.1
MsG0380017591.01.T01 AT1G62620 24.766 214 131 5 43 226 15 228 5.45e-13 70.9
MsG0380017591.01.T01 AT1G12130 27.564 156 102 5 81 226 73 227 8.00e-13 70.5
MsG0380017591.01.T01 AT1G63370 24.299 214 132 5 43 226 15 228 1.17e-12 69.7
MsG0380017591.01.T01 AT1G12200 25.490 204 117 6 57 227 30 231 2.23e-12 68.6
MsG0380017591.01.T01 AT1G12200 25.490 204 117 6 57 227 30 231 2.61e-12 68.9
MsG0380017591.01.T01 AT1G12160 23.750 240 145 8 43 254 14 243 7.60e-12 67.4
MsG0380017591.01.T01 AT1G12140 27.203 261 143 9 33 259 5 252 7.67e-12 67.4

Find 105 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTGTGAATTACCCTTTA+TGG 0.057569 3:+98226406 MsG0380017591.01.T01:CDS
CCACATAAATTTGATAATTT+TGG 0.093377 3:+98229943 MsG0380017591.01.T01:three_prime_UTR
GTTGTTGGTTGTGGTAATTC+TGG 0.228655 3:+98226761 MsG0380017591.01.T01:CDS
GCTGAATTTGATGGTAAAAT+TGG 0.229798 3:+98226542 MsG0380017591.01.T01:CDS
ATTGAAGGTGTAGATGAATT+TGG 0.230080 3:+98226674 MsG0380017591.01.T01:CDS
TGCTAGGAAAATCAACTTTC+GGG 0.237487 3:+98227773 MsG0380017591.01.T01:CDS
GGTAATTCACAGAATTGTTT+TGG 0.279240 3:-98226398 None:intergenic
CTAATTGTGTGGCTTCATTA+TGG 0.292482 3:+98226339 MsG0380017591.01.T01:CDS
AATGTGTCCACCTTTAATTT+TGG 0.293841 3:-98227974 None:intergenic
GAAGATTATGCAGAGAGTTT+TGG 0.298205 3:+98226485 MsG0380017591.01.T01:CDS
ATGAATTTGGAGGGGTTATA+AGG 0.303286 3:+98226687 MsG0380017591.01.T01:CDS
TGGGTTGGATCGTCCTCGTT+TGG 0.307911 3:+98227891 MsG0380017591.01.T01:CDS
GGTACCCTTGCCAAAATTAA+AGG 0.309195 3:+98227964 MsG0380017591.01.T01:CDS
AATTAAAGGTGGACACATTA+AGG 0.324307 3:+98227978 MsG0380017591.01.T01:CDS
TTCTCTTGTTGTTCGAGATT+CGG 0.332436 3:+98226826 MsG0380017591.01.T01:CDS
GGTTCTTGCTCATAGTTTCA+TGG 0.338911 3:+98227842 MsG0380017591.01.T01:CDS
GTTTAGAGGGAAGAAAGTTT+TGG 0.342078 3:+98226739 MsG0380017591.01.T01:CDS
TCATCTACACCTTCAATATT+AGG 0.342806 3:-98226668 None:intergenic
ATCGTAGGAGCAGGACCTTC+TGG 0.343082 3:+98226257 MsG0380017591.01.T01:CDS
CCACTTGGAAATGGCTTCAT+AGG 0.347378 3:-98229744 None:intergenic
ATGCTAGGAAAATCAACTTT+CGG 0.354338 3:+98227772 MsG0380017591.01.T01:CDS
GGGACTGCAAGGTGCCTCTA+TGG 0.365215 3:+98229812 MsG0380017591.01.T01:CDS
CCTTTCCACCCACTTGGAAA+TGG 0.368720 3:-98229753 None:intergenic
ATCTGAGGGGAATTCCATAA+AGG 0.386429 3:-98226420 None:intergenic
ACAAAAGCAATGTTCCCTAT+TGG 0.386603 3:+98228893 MsG0380017591.01.T01:CDS
GGGTTGGATCGTCCTCGTTT+GGG 0.392628 3:+98227892 MsG0380017591.01.T01:CDS
ATATCATACCTTGAGCCAAT+AGG 0.393501 3:-98228908 None:intergenic
CGCCGTCGCGTGTTTGTTCA+AGG 0.405166 3:+98226227 MsG0380017591.01.T01:CDS
CTTGGTGACACTGCTCAACT+TGG 0.407645 3:+98227871 MsG0380017591.01.T01:CDS
ATTCATTCATTTATTTATTG+AGG 0.408153 3:+98230058 MsG0380017591.01.T01:three_prime_UTR
GGAAGAGGATATGTTCTCTA+AGG 0.414461 3:+98229710 MsG0380017591.01.T01:intron
TATCATACCTTGAGCCAATA+GGG 0.429202 3:-98228907 None:intergenic
GTTACTCAAGTGGTTTCCAT+TGG 0.431641 3:+98227807 MsG0380017591.01.T01:CDS
TTACTCAAGTGGTTTCCATT+GGG 0.437213 3:+98227808 MsG0380017591.01.T01:CDS
TAATCATTGATATTTGATCT+TGG 0.445151 3:+98230018 MsG0380017591.01.T01:three_prime_UTR
GGTGATAGACACAAAAGAAA+AGG 0.448689 3:+98229969 MsG0380017591.01.T01:three_prime_UTR
CGGAGAGGTTCTTGAGTTGA+AGG 0.449506 3:-98227918 None:intergenic
ATAGTTTCATGGCTTATGCT+TGG 0.449906 3:+98227853 MsG0380017591.01.T01:CDS
TATTGCTTAAGAGAGTTAGA+AGG 0.452128 3:+98226137 MsG0380017591.01.T01:CDS
TTCCATTGGGACTTGTCGAT+CGG 0.454350 3:+98227821 MsG0380017591.01.T01:CDS
GATGGCATCATATTGGCAAC+CGG 0.459043 3:+98228868 MsG0380017591.01.T01:CDS
GTGCAAAATGCTGAATTTGA+TGG 0.462235 3:+98226533 MsG0380017591.01.T01:CDS
TTGATGGTAAAATTGGTTGT+TGG 0.471687 3:+98226549 MsG0380017591.01.T01:CDS
CACACAGTGGAATTCGTAGA+TGG 0.480947 3:+98228829 MsG0380017591.01.T01:CDS
AATTTATGTGGCAAAATTGA+GGG 0.482393 3:-98229931 None:intergenic
AAATTTATGTGGCAAAATTG+AGG 0.482875 3:-98229932 None:intergenic
AAAAGTGGTGAAGAGTTTAG+AGG 0.487823 3:+98226725 MsG0380017591.01.T01:CDS
TCTGAGGGGAATTCCATAAA+GGG 0.494865 3:-98226419 None:intergenic
AAAGTGGTGAAGAGTTTAGA+GGG 0.496476 3:+98226726 MsG0380017591.01.T01:CDS
TGACACTGCTCAACTTGGGT+TGG 0.497517 3:+98227876 MsG0380017591.01.T01:CDS
GTGATAGACACAAAAGAAAA+GGG 0.502130 3:+98229970 MsG0380017591.01.T01:three_prime_UTR
AATGTCATCAGCTATTCTCT+TGG 0.503005 3:-98229838 None:intergenic
CCAAAATTATCAAATTTATG+TGG 0.510168 3:-98229943 None:intergenic
TGGTTGTGGTAATTCTGGTA+TGG 0.510440 3:+98226766 MsG0380017591.01.T01:CDS
ACAACAGTTCATAAAGTACT+TGG 0.510479 3:+98226463 MsG0380017591.01.T01:CDS
TGTCCATGTGGTTACTCAAG+TGG 0.513763 3:+98227797 MsG0380017591.01.T01:CDS
TCGCGTGTTTGTTCAAGGAC+CGG 0.514915 3:+98226232 MsG0380017591.01.T01:CDS
GATATGTTCTCTAAGGAAGA+TGG 0.515584 3:+98229717 MsG0380017591.01.T01:CDS
CGTTGGTTGATCGTTGCGAC+CGG 0.515903 3:+98226623 MsG0380017591.01.T01:CDS
CTACGGAATATGTTTGTCGT+TGG 0.522172 3:+98226606 MsG0380017591.01.T01:CDS
CATACAAGTTTGTATAAAAG+TGG 0.522680 3:+98226710 MsG0380017591.01.T01:CDS
GAAGGTGTAGATGAATTTGG+AGG 0.528940 3:+98226677 MsG0380017591.01.T01:CDS
AAGGTGTAGATGAATTTGGA+GGG 0.531621 3:+98226678 MsG0380017591.01.T01:CDS
CTTCAACTCAAGAACCTCTC+CGG 0.537129 3:+98227919 MsG0380017591.01.T01:CDS
GGAGAGGTTCTTGAGTTGAA+GGG 0.547836 3:-98227917 None:intergenic
TTGGTGACACTGCTCAACTT+GGG 0.549242 3:+98227872 MsG0380017591.01.T01:CDS
GCTGTTGTGCCTAATATTGA+AGG 0.549425 3:+98226659 MsG0380017591.01.T01:CDS
TATTCTCTTGGCATCCATAG+AGG 0.550970 3:-98229826 None:intergenic
GGGTATGTTGGGAAATCTGA+GGG 0.551955 3:-98226434 None:intergenic
CCATTTCCAAGTGGGTGGAA+AGG 0.556864 3:+98229753 MsG0380017591.01.T01:CDS
CAACTTTCGGGTTGTCCATG+TGG 0.556906 3:+98227785 MsG0380017591.01.T01:CDS
AACAGCTTCTGCATTCTCAC+CGG 0.560263 3:-98226642 None:intergenic
TTCCTAGCATCTCTCGTGGT+AGG 0.560936 3:-98227759 None:intergenic
GGTCCTGCTCCTACGATCAC+CGG 0.561323 3:-98226251 None:intergenic
TAGTAAAGGGGATGTAACTA+CGG 0.564472 3:+98226589 MsG0380017591.01.T01:CDS
AGGTACGACCAAGCATAAAA+CGG 0.569581 3:+98228797 MsG0380017591.01.T01:intron
GGACCGGTGATCGTAGGAGC+AGG 0.570039 3:+98226248 MsG0380017591.01.T01:CDS
CTATGAAGCCATTTCCAAGT+GGG 0.571956 3:+98229745 MsG0380017591.01.T01:CDS
AGGTGTAGATGAATTTGGAG+GGG 0.583926 3:+98226679 MsG0380017591.01.T01:CDS
CAAGAGAAGGAGTAGCATCA+TGG 0.589521 3:-98226811 None:intergenic
AGGGTATGTTGGGAAATCTG+AGG 0.590255 3:-98226435 None:intergenic
GTTCAAGGACCGGTGATCGT+AGG 0.596331 3:+98226242 MsG0380017591.01.T01:CDS
AGGGTACCCACATCTAAGAC+AGG 0.599272 3:-98227949 None:intergenic
GAGAGGTTCTTGAGTTGAAG+GGG 0.600506 3:-98227916 None:intergenic
AAAACTCCTGTCTTAGATGT+GGG 0.603155 3:+98227943 MsG0380017591.01.T01:CDS
TGAAGCCATTTCCAAGTGGG+TGG 0.610400 3:+98229748 MsG0380017591.01.T01:CDS
CAATGTTCCCTATTGGCTCA+AGG 0.610422 3:+98228900 MsG0380017591.01.T01:CDS
TGCACTGTCTCATTAAACCG+TGG 0.610645 3:-98226515 None:intergenic
AACCGATCGACAAGTCCCAA+TGG 0.612719 3:-98227823 None:intergenic
GAATCTCGAACAACAAGAGA+AGG 0.614342 3:-98226824 None:intergenic
ACCCTTGCCAAAATTAAAGG+TGG 0.619165 3:+98227967 MsG0380017591.01.T01:CDS
ATGAAGACGTAATCGATCGT+AGG 0.621938 3:-98226372 None:intergenic
GATCTTTCTAGTATTACACA+TGG 0.634588 3:-98226317 None:intergenic
GTCCTTGAACAAACACGCGA+CGG 0.635673 3:-98226229 None:intergenic
CAGTGGAATTCGTAGATGGA+AGG 0.636435 3:+98228833 MsG0380017591.01.T01:CDS
TTAGAAGCTGAAGCAAAGCA+TGG 0.637004 3:+98229870 MsG0380017591.01.T01:CDS
GTCCTACCACGAGAGATGCT+AGG 0.644002 3:+98227757 MsG0380017591.01.T01:CDS
CAACAAATCATCATCAACAA+CGG 0.644186 3:+98226202 MsG0380017591.01.T01:CDS
GCAGCTGCTGCTAAACCAGA+AGG 0.646911 3:-98226272 None:intergenic
ACTAGAAAGATCTAATTGTG+TGG 0.651949 3:+98226328 MsG0380017591.01.T01:CDS
CCTATGAAGCCATTTCCAAG+TGG 0.662153 3:+98229744 MsG0380017591.01.T01:CDS
AGTTGAAGGGGACCCAAACG+AGG 0.670978 3:-98227904 None:intergenic
AAACCACTTGAGTAACCACA+TGG 0.674308 3:-98227800 None:intergenic
GGTATGTTGGGAAATCTGAG+GGG 0.693219 3:-98226433 None:intergenic
ACGGTTAAAACGTCACACAG+TGG 0.719614 3:+98228816 MsG0380017591.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATAATTATATTATTT+TGG - Chr3:98227192-98227211 None:intergenic 0.0%
!! AATCTAATGAAAATAATAAT+GGG - Chr3:98228694-98228713 None:intergenic 10.0%
!! ATAAATTATATAATATATGC+AGG + Chr3:98229689-98229708 MsG0380017591.01.T01:intron 10.0%
!! TAATCTAATGAAAATAATAA+TGG - Chr3:98228695-98228714 None:intergenic 10.0%
!!! TATCATTATTTAATTTACTA+TGG + Chr3:98227710-98227729 MsG0380017591.01.T01:intron 10.0%
!!! TCAAAATTACATTTTTTATT+GGG - Chr3:98227232-98227251 None:intergenic 10.0%
!!! TGTACTAAATAAATTTTATT+TGG + Chr3:98229656-98229675 MsG0380017591.01.T01:intron 10.0%
!!! TTCAAAATTACATTTTTTAT+TGG - Chr3:98227233-98227252 None:intergenic 10.0%
!! AAATAAGAAACCTAAAAAAT+TGG - Chr3:98227160-98227179 None:intergenic 15.0%
!! AAATGGAAATTAATTAAACT+AGG - Chr3:98227137-98227156 None:intergenic 15.0%
!! AAATTAATTAAACTAGGTTT+GGG - Chr3:98227131-98227150 None:intergenic 15.0%
!! AGATTAAAAATCAAATTTGT+GGG - Chr3:98227266-98227285 None:intergenic 15.0%
!! ATAGTACAATAATTAAATGA+TGG + Chr3:98229610-98229629 MsG0380017591.01.T01:intron 15.0%
!! ATTCATTCATTTATTTATTG+AGG + Chr3:98230058-98230077 MsG0380017591.01.T01:three_prime_UTR 15.0%
!! TATAAATAAGAAACTAATAG+TGG + Chr3:98228405-98228424 MsG0380017591.01.T01:intron 15.0%
!! TGAACAAAAAATTCTAAATA+AGG - Chr3:98226992-98227011 None:intergenic 15.0%
!! TTCAAATTTCAATGAAATAT+TGG - Chr3:98228171-98228190 None:intergenic 15.0%
!!! TTTTATAAATATTTTCTCGA+TGG + Chr3:98228371-98228390 MsG0380017591.01.T01:intron 15.0%
!!! TTTTTTGAACAAATCTATTT+CGG - Chr3:98227372-98227391 None:intergenic 15.0%
!! AAAAAAACCTAAAAATCGAT+TGG + Chr3:98228762-98228781 MsG0380017591.01.T01:intron 20.0%
!! AAAGCATAAAGGAAATAATT+AGG - Chr3:98228433-98228452 None:intergenic 20.0%
!! AAATGGAATGAAATAATCAT+TGG - Chr3:98229104-98229123 None:intergenic 20.0%
!! AATTGTGACCAAATTAAAAT+AGG - Chr3:98229544-98229563 None:intergenic 20.0%
!! ATATATAAAAAAGAGAGAGA+AGG - Chr3:98228478-98228497 None:intergenic 20.0%
!! ATTAAAAATCAAATTTGTGG+GGG - Chr3:98227264-98227283 None:intergenic 20.0%
!! ATTGTGACCAAATTAAAATA+GGG - Chr3:98229543-98229562 None:intergenic 20.0%
!! ATTTCAGATATAAAGATGTT+TGG + Chr3:98229561-98229580 MsG0380017591.01.T01:intron 20.0%
!! CCAAAATTATCAAATTTATG+TGG - Chr3:98229946-98229965 None:intergenic 20.0%
!! GAAATTAATTAAACTAGGTT+TGG - Chr3:98227132-98227151 None:intergenic 20.0%
!! GAGATTAAAAATCAAATTTG+TGG - Chr3:98227267-98227286 None:intergenic 20.0%
!! GATTAAAAATCAAATTTGTG+GGG - Chr3:98227265-98227284 None:intergenic 20.0%
!! GCTAATCAACAAAAAAAAAT+TGG + Chr3:98228634-98228653 MsG0380017591.01.T01:intron 20.0%
!! TAATCATTGATATTTGATCT+TGG + Chr3:98230018-98230037 MsG0380017591.01.T01:three_prime_UTR 20.0%
!! TACAAAACAACCAATTAAAA+AGG - Chr3:98227081-98227100 None:intergenic 20.0%
!! TTCATTAGATTAGATTGTTA+GGG + Chr3:98228703-98228722 MsG0380017591.01.T01:intron 20.0%
!! TTTCATTAGATTAGATTGTT+AGG + Chr3:98228702-98228721 MsG0380017591.01.T01:intron 20.0%
!!! ACTAATTTGATTTGATAGAA+AGG - Chr3:98228021-98228040 None:intergenic 20.0%
!!! AGAAGAACATTTTTCTTAAA+GGG - Chr3:98229287-98229306 None:intergenic 20.0%
!!! ATGGTTAATTTTGTAAATGA+AGG + Chr3:98227729-98227748 MsG0380017591.01.T01:intron 20.0%
!!! ATTTCCATTTCCAATTTTTT+AGG + Chr3:98227147-98227166 MsG0380017591.01.T01:intron 20.0%
!!! ATTTCTACTTCCTTTTTAAT+TGG + Chr3:98227068-98227087 MsG0380017591.01.T01:intron 20.0%
!!! CCACATAAATTTGATAATTT+TGG + Chr3:98229943-98229962 MsG0380017591.01.T01:three_prime_UTR 20.0%
!!! CTAATTTGATTTGATAGAAA+GGG - Chr3:98228020-98228039 None:intergenic 20.0%
!!! GAGAAGAAAAAATTGTTTTA+TGG + Chr3:98226906-98226925 MsG0380017591.01.T01:intron 20.0%
!!! TCCATTTCTTTATTTTTTCT+TGG + Chr3:98228530-98228549 MsG0380017591.01.T01:intron 20.0%
!!! TGAAGAGTTTTAATAGTAAA+GGG + Chr3:98226576-98226595 MsG0380017591.01.T01:CDS 20.0%
!!! TGTCTTTTTCTTATAAAGTA+GGG + Chr3:98229055-98229074 MsG0380017591.01.T01:intron 20.0%
!!! TTATAACTGTCTTTTGAAAA+TGG + Chr3:98226871-98226890 MsG0380017591.01.T01:intron 20.0%
!!! TTGAAGAGTTTTAATAGTAA+AGG + Chr3:98226575-98226594 MsG0380017591.01.T01:CDS 20.0%
!!! TTGTCTTTTTCTTATAAAGT+AGG + Chr3:98229054-98229073 MsG0380017591.01.T01:intron 20.0%
!!! TTTTTAATCTCACAAATTCT+TGG + Chr3:98227276-98227295 MsG0380017591.01.T01:intron 20.0%
!!! TTTTTTGTTCAATTTGATGA+AGG + Chr3:98227001-98227020 MsG0380017591.01.T01:intron 20.0%
! AAAAGGAAGTAGAAATCAAA+AGG - Chr3:98227064-98227083 None:intergenic 25.0%
! AAATTTATGTGGCAAAATTG+AGG - Chr3:98229935-98229954 None:intergenic 25.0%
! AATCATTAACATGTGTCTTA+AGG - Chr3:98228994-98229013 None:intergenic 25.0%
! AATTTATGTGGCAAAATTGA+GGG - Chr3:98229934-98229953 None:intergenic 25.0%
! ATCATTATTTGAATCATGCT+TGG + Chr3:98228660-98228679 MsG0380017591.01.T01:intron 25.0%
! ATGTGATTTCAATCAAATCA+TGG + Chr3:98228570-98228589 MsG0380017591.01.T01:intron 25.0%
! CATACAAGTTTGTATAAAAG+TGG + Chr3:98226710-98226729 MsG0380017591.01.T01:CDS 25.0%
! GAAACCTAAAAAATTGGAAA+TGG - Chr3:98227154-98227173 None:intergenic 25.0%
! GCCAAGAAAAAATAAAGAAA+TGG - Chr3:98228534-98228553 None:intergenic 25.0%
! TATATAATATATGCAGGAAG+AGG + Chr3:98229695-98229714 MsG0380017591.01.T01:intron 25.0%
! TCCTTAAAAATTTCCACTTT+AGG + Chr3:98229223-98229242 MsG0380017591.01.T01:intron 25.0%
! TCTTATGTAATGTGAGATTT+GGG + Chr3:98228293-98228312 MsG0380017591.01.T01:intron 25.0%
! TTCTTATGTAATGTGAGATT+TGG + Chr3:98228292-98228311 MsG0380017591.01.T01:intron 25.0%
! TTGATAGAAAGGGAAATATA+GGG - Chr3:98228010-98228029 None:intergenic 25.0%
! TTTGATAGAAAGGGAAATAT+AGG - Chr3:98228011-98228030 None:intergenic 25.0%
!! ACCTAAAGTGGAAATTTTTA+AGG - Chr3:98229227-98229246 None:intergenic 25.0%
!! ATCATTTTATTGCACTTTCT+TGG + Chr3:98227440-98227459 MsG0380017591.01.T01:intron 25.0%
!! GAGAAGAACATTTTTCTTAA+AGG - Chr3:98229288-98229307 None:intergenic 25.0%
!! GTCTTTTTCTTATAAAGTAG+GGG + Chr3:98229056-98229075 MsG0380017591.01.T01:intron 25.0%
!!! AGGGAATTAATAGTTTTGAA+AGG + Chr3:98229503-98229522 MsG0380017591.01.T01:intron 25.0%
!!! ATGTTGATTCATGTACTAAA+TGG + Chr3:98227491-98227510 MsG0380017591.01.T01:intron 25.0%
!!! GAAGAGTTTTAATAGTAAAG+GGG + Chr3:98226577-98226596 MsG0380017591.01.T01:CDS 25.0%
!!! GAGATATTTTAACTGAGATT+TGG + Chr3:98228099-98228118 MsG0380017591.01.T01:intron 25.0%
!!! GCAATTTCCCTATTTTAATT+TGG + Chr3:98229533-98229552 MsG0380017591.01.T01:intron 25.0%
!!! GGGAATTAATAGTTTTGAAA+GGG + Chr3:98229504-98229523 MsG0380017591.01.T01:intron 25.0%
!!! TAAATTTGATAATTTTGGCC+AGG + Chr3:98229948-98229967 MsG0380017591.01.T01:three_prime_UTR 25.0%
!!! TTATGAACTGTTGTTTTGAA+GGG - Chr3:98226457-98226476 None:intergenic 25.0%
!!! TTCGTTGTTTTCATGAATAA+AGG - Chr3:98226179-98226198 None:intergenic 25.0%
!!! TTGTTGTTTTAGAGTATGTT+CGG - Chr3:98228250-98228269 None:intergenic 25.0%
!!! TTTATGAACTGTTGTTTTGA+AGG - Chr3:98226458-98226477 None:intergenic 25.0%
AAAACACCCAGAAAAATCAT+GGG - Chr3:98227567-98227586 None:intergenic 30.0%
AAATGTTAACTTATGCCCTT+AGG - Chr3:98229264-98229283 None:intergenic 30.0%
AATGTTAACTTATGCCCTTA+GGG - Chr3:98229263-98229282 None:intergenic 30.0%
AATTAAAGGTGGACACATTA+AGG + Chr3:98227978-98227997 MsG0380017591.01.T01:CDS 30.0%
ACAAATTCTTGGATTCTCAT+AGG + Chr3:98227287-98227306 MsG0380017591.01.T01:intron 30.0%
ACTAGAAAGATCTAATTGTG+TGG + Chr3:98226328-98226347 MsG0380017591.01.T01:CDS 30.0%
ATGCTAGGAAAATCAACTTT+CGG + Chr3:98227772-98227791 MsG0380017591.01.T01:CDS 30.0%
ATTATTTGAATCATGCTTGG+TGG + Chr3:98228663-98228682 MsG0380017591.01.T01:intron 30.0%
ATTCTGTGAATTACCCTTTA+TGG + Chr3:98226406-98226425 MsG0380017591.01.T01:CDS 30.0%
CAACAAATCATCATCAACAA+CGG + Chr3:98226202-98226221 MsG0380017591.01.T01:CDS 30.0%
GCAAAGCAAGAATTAAACAA+GGG - Chr3:98227327-98227346 None:intergenic 30.0%
GTGATAGACACAAAAGAAAA+GGG + Chr3:98229970-98229989 MsG0380017591.01.T01:three_prime_UTR 30.0%
TATTGCTTAAGAGAGTTAGA+AGG + Chr3:98226137-98226156 MsG0380017591.01.T01:CDS 30.0%
TCATCTACACCTTCAATATT+AGG - Chr3:98226671-98226690 None:intergenic 30.0%
TCTTATAAAGTTAGCTAGCA+TGG - Chr3:98228081-98228100 None:intergenic 30.0%
TGCAAAGCAAGAATTAAACA+AGG - Chr3:98227328-98227347 None:intergenic 30.0%
TTATTTGAATCATGCTTGGT+GGG + Chr3:98228664-98228683 MsG0380017591.01.T01:intron 30.0%
! ACAACAGTTCATAAAGTACT+TGG + Chr3:98226463-98226482 MsG0380017591.01.T01:CDS 30.0%
! ATTGAAGGTGTAGATGAATT+TGG + Chr3:98226674-98226693 MsG0380017591.01.T01:CDS 30.0%
! GATCTTTCTAGTATTACACA+TGG - Chr3:98226320-98226339 None:intergenic 30.0%
! GCTGAATTTGATGGTAAAAT+TGG + Chr3:98226542-98226561 MsG0380017591.01.T01:CDS 30.0%
! GGTAATTCACAGAATTGTTT+TGG - Chr3:98226401-98226420 None:intergenic 30.0%
! TAACTTTCCTCGACATTTTT+CGG + Chr3:98229345-98229364 MsG0380017591.01.T01:intron 30.0%
! TTGATGGTAAAATTGGTTGT+TGG + Chr3:98226549-98226568 MsG0380017591.01.T01:CDS 30.0%
!! AATGTGTCCACCTTTAATTT+TGG - Chr3:98227977-98227996 None:intergenic 30.0%
!! GAATTTTGATGGCATCATAT+TGG + Chr3:98228861-98228880 MsG0380017591.01.T01:CDS 30.0%
!!! TACGCTGTAACTTTTAAGAT+CGG + Chr3:98229380-98229399 MsG0380017591.01.T01:intron 30.0%
AAAAACTCCTGTCTTAGATG+TGG + Chr3:98227942-98227961 MsG0380017591.01.T01:CDS 35.0%
AAAACTCCTGTCTTAGATGT+GGG + Chr3:98227943-98227962 MsG0380017591.01.T01:CDS 35.0%
AAAAGTGGTGAAGAGTTTAG+AGG + Chr3:98226725-98226744 MsG0380017591.01.T01:CDS 35.0%
AAAGTGGTGAAGAGTTTAGA+GGG + Chr3:98226726-98226745 MsG0380017591.01.T01:CDS 35.0%
AAGGTGTAGATGAATTTGGA+GGG + Chr3:98226678-98226697 MsG0380017591.01.T01:CDS 35.0%
AATGTCATCAGCTATTCTCT+TGG - Chr3:98229841-98229860 None:intergenic 35.0%
ACAAAAGCAATGTTCCCTAT+TGG + Chr3:98228893-98228912 MsG0380017591.01.T01:CDS 35.0%
AGTTAACTCGTGTTGAGTTA+AGG + Chr3:98229483-98229502 MsG0380017591.01.T01:intron 35.0%
ATAGTTTCATGGCTTATGCT+TGG + Chr3:98227853-98227872 MsG0380017591.01.T01:CDS 35.0%
ATATCATACCTTGAGCCAAT+AGG - Chr3:98228911-98228930 None:intergenic 35.0%
ATGAATTTGGAGGGGTTATA+AGG + Chr3:98226687-98226706 MsG0380017591.01.T01:CDS 35.0%
ATTTCGGAACTTGAAACCTA+TGG - Chr3:98227356-98227375 None:intergenic 35.0%
CTAATTGTGTGGCTTCATTA+TGG + Chr3:98226339-98226358 MsG0380017591.01.T01:CDS 35.0%
GAAAACACCCAGAAAAATCA+TGG - Chr3:98227568-98227587 None:intergenic 35.0%
GCACTTGATGTAAAGCATAA+AGG - Chr3:98228444-98228463 None:intergenic 35.0%
GGTGATAGACACAAAAGAAA+AGG + Chr3:98229969-98229988 MsG0380017591.01.T01:three_prime_UTR 35.0%
GTCAAACCAAAAAAAGCAGT+GGG - Chr3:98227654-98227673 None:intergenic 35.0%
GTCAAGCCTAAGAATGATTA+TGG + Chr3:98228140-98228159 MsG0380017591.01.T01:intron 35.0%
GTGCAAAATGCTGAATTTGA+TGG + Chr3:98226533-98226552 MsG0380017591.01.T01:CDS 35.0%
GTGTTGCCATAATCATTCTT+AGG - Chr3:98228149-98228168 None:intergenic 35.0%
GTTAACTCGTGTTGAGTTAA+GGG + Chr3:98229484-98229503 MsG0380017591.01.T01:intron 35.0%
TAACTCTTGTTCGACATTCT+TGG - Chr3:98229468-98229487 None:intergenic 35.0%
TAGTAAAGGGGATGTAACTA+CGG + Chr3:98226589-98226608 MsG0380017591.01.T01:CDS 35.0%
TATCATACCTTGAGCCAATA+GGG - Chr3:98228910-98228929 None:intergenic 35.0%
TCAAACCAAAAAAAGCAGTG+GGG - Chr3:98227653-98227672 None:intergenic 35.0%
TGCTAGGAAAATCAACTTTC+GGG + Chr3:98227773-98227792 MsG0380017591.01.T01:CDS 35.0%
TGTCAAACCAAAAAAAGCAG+TGG - Chr3:98227655-98227674 None:intergenic 35.0%
TTACTCAAGTGGTTTCCATT+GGG + Chr3:98227808-98227827 MsG0380017591.01.T01:CDS 35.0%
TTGGCACACAGATTAAGAAA+TGG - Chr3:98229121-98229140 None:intergenic 35.0%
TTTCGGAACTTGAAACCTAT+GGG - Chr3:98227355-98227374 None:intergenic 35.0%
! AGGTAAAAATGGACTCTATG+CGG + Chr3:98229773-98229792 MsG0380017591.01.T01:CDS 35.0%
! ATGCGGTAGGTTTTACAAAA+AGG + Chr3:98229790-98229809 MsG0380017591.01.T01:CDS 35.0%
! CCTAAAAATCGATTGGTCAT+TGG + Chr3:98228769-98228788 MsG0380017591.01.T01:intron 35.0%
! GAAGATTATGCAGAGAGTTT+TGG + Chr3:98226485-98226504 MsG0380017591.01.T01:CDS 35.0%
! GATATGTTCTCTAAGGAAGA+TGG + Chr3:98229717-98229736 MsG0380017591.01.T01:CDS 35.0%
! GGAACTGATCTTAAAAGTGT+CGG + Chr3:98229425-98229444 MsG0380017591.01.T01:intron 35.0%
! GTAATGTGAGATTTGGGTTA+TGG + Chr3:98228299-98228318 MsG0380017591.01.T01:intron 35.0%
! GTTTAGAGGGAAGAAAGTTT+TGG + Chr3:98226739-98226758 MsG0380017591.01.T01:CDS 35.0%
! TGCGGTAGGTTTTACAAAAA+GGG + Chr3:98229791-98229810 MsG0380017591.01.T01:CDS 35.0%
! TTTCTTTTGTGTCTATCACC+TGG - Chr3:98229969-98229988 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + Chr3:98229147-98229166 MsG0380017591.01.T01:intron 35.0%
!! ATCTAAGACAGGAGTTTTTC+CGG - Chr3:98227941-98227960 None:intergenic 35.0%
!! ATGCAGAGAGTTTTGGTATT+AGG + Chr3:98226492-98226511 MsG0380017591.01.T01:CDS 35.0%
!! ATGGTAGCTCTAGTATTAGT+TGG + Chr3:98228318-98228337 MsG0380017591.01.T01:intron 35.0%
!! CCAATGACCAATCGATTTTT+AGG - Chr3:98228772-98228791 None:intergenic 35.0%
!! CGTTTTAACCGTTTTATGCT+TGG - Chr3:98228808-98228827 None:intergenic 35.0%
!! TAGCTCTAGTATTAGTTGGT+TGG + Chr3:98228322-98228341 MsG0380017591.01.T01:intron 35.0%
!! TCCACCTTTAATTTTGGCAA+GGG - Chr3:98227971-98227990 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG - Chr3:98229146-98229165 None:intergenic 35.0%
!! TTCTCTTGTTGTTCGAGATT+CGG + Chr3:98226826-98226845 MsG0380017591.01.T01:CDS 35.0%
!!! AAAGTTTTGGTTGTTGGTTG+TGG + Chr3:98226752-98226771 MsG0380017591.01.T01:CDS 35.0%
!!! GTTGTTTTGAAGGGTATGTT+GGG - Chr3:98226448-98226467 None:intergenic 35.0%
!!! TAACATTTTTTAAGTGCGCG+TGG - Chr3:98229587-98229606 None:intergenic 35.0%
!!! TGTTGTTTTGAAGGGTATGT+TGG - Chr3:98226449-98226468 None:intergenic 35.0%
AAAAAAAGCAGTGGGGGAAA+AGG - Chr3:98227646-98227665 None:intergenic 40.0%
AAACCACTTGAGTAACCACA+TGG - Chr3:98227803-98227822 None:intergenic 40.0%
ACATGTTAGGGAACCTAAAG+TGG - Chr3:98229239-98229258 None:intergenic 40.0%
ACCCTTGCCAAAATTAAAGG+TGG + Chr3:98227967-98227986 MsG0380017591.01.T01:CDS 40.0%
AGGTACGACCAAGCATAAAA+CGG + Chr3:98228797-98228816 MsG0380017591.01.T01:intron 40.0%
AGGTGTAGATGAATTTGGAG+GGG + Chr3:98226679-98226698 MsG0380017591.01.T01:CDS 40.0%
AGTGGGTGGAAAGGTAAAAA+TGG + Chr3:98229762-98229781 MsG0380017591.01.T01:CDS 40.0%
AGTTCCATCACTTATTACGC+TGG - Chr3:98229411-98229430 None:intergenic 40.0%
ATCTGAGGGGAATTCCATAA+AGG - Chr3:98226423-98226442 None:intergenic 40.0%
ATGAAGACGTAATCGATCGT+AGG - Chr3:98226375-98226394 None:intergenic 40.0%
CAAACCAAAAAAAGCAGTGG+GGG - Chr3:98227652-98227671 None:intergenic 40.0%
CTACGGAATATGTTTGTCGT+TGG + Chr3:98226606-98226625 MsG0380017591.01.T01:CDS 40.0%
CTATGAAGCCATTTCCAAGT+GGG + Chr3:98229745-98229764 MsG0380017591.01.T01:CDS 40.0%
GAATCTCGAACAACAAGAGA+AGG - Chr3:98226827-98226846 None:intergenic 40.0%
GCTGTTGTGCCTAATATTGA+AGG + Chr3:98226659-98226678 MsG0380017591.01.T01:CDS 40.0%
GGAAGAGGATATGTTCTCTA+AGG + Chr3:98229710-98229729 MsG0380017591.01.T01:intron 40.0%
GGTACCCTTGCCAAAATTAA+AGG + Chr3:98227964-98227983 MsG0380017591.01.T01:CDS 40.0%
GGTTCTTGCTCATAGTTTCA+TGG + Chr3:98227842-98227861 MsG0380017591.01.T01:CDS 40.0%
GTTACTCAAGTGGTTTCCAT+TGG + Chr3:98227807-98227826 MsG0380017591.01.T01:CDS 40.0%
TATTCTCTTGGCATCCATAG+AGG - Chr3:98229829-98229848 None:intergenic 40.0%
TATTGGGAGATAGTGCTTGA+TGG - Chr3:98227216-98227235 None:intergenic 40.0%
TCTGAGGGGAATTCCATAAA+GGG - Chr3:98226422-98226441 None:intergenic 40.0%
TGAACCAGCGTAATAAGTGA+TGG + Chr3:98229404-98229423 MsG0380017591.01.T01:intron 40.0%
TGGTTGTGGTAATTCTGGTA+TGG + Chr3:98226766-98226785 MsG0380017591.01.T01:CDS 40.0%
TTAGAAGCTGAAGCAAAGCA+TGG + Chr3:98229870-98229889 MsG0380017591.01.T01:CDS 40.0%
TTTACAAAAAGGGGACTGCA+AGG + Chr3:98229801-98229820 MsG0380017591.01.T01:CDS 40.0%
! AAAAATGGACTCTATGCGGT+AGG + Chr3:98229777-98229796 MsG0380017591.01.T01:CDS 40.0%
! ACCACACCCATGATTTTTCT+GGG + Chr3:98227558-98227577 MsG0380017591.01.T01:intron 40.0%
! ATCATGGACGAAAGCACAAT+TGG + Chr3:98228586-98228605 MsG0380017591.01.T01:intron 40.0%
! CTGAGATTTGGTCATGCAAA+TGG + Chr3:98228111-98228130 MsG0380017591.01.T01:intron 40.0%
! GAAGGTGTAGATGAATTTGG+AGG + Chr3:98226677-98226696 MsG0380017591.01.T01:CDS 40.0%
! GCGGTAGGTTTTACAAAAAG+GGG + Chr3:98229792-98229811 MsG0380017591.01.T01:CDS 40.0%
! GGAAGGTCAGAGAATTTTGA+TGG + Chr3:98228850-98228869 MsG0380017591.01.T01:CDS 40.0%
! GTTGTTGGTTGTGGTAATTC+TGG + Chr3:98226761-98226780 MsG0380017591.01.T01:CDS 40.0%
! TTTTTACCTTTCCACCCACT+TGG - Chr3:98229762-98229781 None:intergenic 40.0%
!! AGAGTTTTGGTATTAGGCCA+CGG + Chr3:98226498-98226517 MsG0380017591.01.T01:CDS 40.0%
!! GGGAACATTGCTTTTGTAAC+CGG - Chr3:98228890-98228909 None:intergenic 40.0%
!! GTCCACCTTTAATTTTGGCA+AGG - Chr3:98227972-98227991 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG + Chr3:98229151-98229170 MsG0380017591.01.T01:intron 40.0%
!!! GGGAAGAAAGTTTTGGTTGT+TGG + Chr3:98226746-98226765 MsG0380017591.01.T01:CDS 40.0%
!!! TTTTCCCCCACTGCTTTTTT+TGG + Chr3:98227645-98227664 MsG0380017591.01.T01:intron 40.0%
AACAGCTTCTGCATTCTCAC+CGG - Chr3:98226645-98226664 None:intergenic 45.0%
ACCCAGAAAAATCATGGGTG+TGG - Chr3:98227562-98227581 None:intergenic 45.0%
ACGGTTAAAACGTCACACAG+TGG + Chr3:98228816-98228835 MsG0380017591.01.T01:CDS 45.0%
ACTCATGCCGAAAAATGTCG+AGG - Chr3:98229355-98229374 None:intergenic 45.0%
AGGGTATGTTGGGAAATCTG+AGG - Chr3:98226438-98226457 None:intergenic 45.0%
ATTCTCAAGCATGCGCAACA+TGG + Chr3:98227463-98227482 MsG0380017591.01.T01:intron 45.0%
CAAGAGAAGGAGTAGCATCA+TGG - Chr3:98226814-98226833 None:intergenic 45.0%
CACACAGTGGAATTCGTAGA+TGG + Chr3:98228829-98228848 MsG0380017591.01.T01:CDS 45.0%
CAGAAAAATCATGGGTGTGG+TGG - Chr3:98227559-98227578 None:intergenic 45.0%
CAGTGGAATTCGTAGATGGA+AGG + Chr3:98228833-98228852 MsG0380017591.01.T01:CDS 45.0%
CCACTTGGAAATGGCTTCAT+AGG - Chr3:98229747-98229766 None:intergenic 45.0%
CCTATGAAGCCATTTCCAAG+TGG + Chr3:98229744-98229763 MsG0380017591.01.T01:CDS 45.0%
CTTCAACTCAAGAACCTCTC+CGG + Chr3:98227919-98227938 MsG0380017591.01.T01:CDS 45.0%
GATGGCATCATATTGGCAAC+CGG + Chr3:98228868-98228887 MsG0380017591.01.T01:CDS 45.0%
GGGTATGTTGGGAAATCTGA+GGG - Chr3:98226437-98226456 None:intergenic 45.0%
GGTATGTTGGGAAATCTGAG+GGG - Chr3:98226436-98226455 None:intergenic 45.0%
TGCACTGTCTCATTAAACCG+TGG - Chr3:98226518-98226537 None:intergenic 45.0%
TGTCCATGTGGTTACTCAAG+TGG + Chr3:98227797-98227816 MsG0380017591.01.T01:CDS 45.0%
TTCCATTGGGACTTGTCGAT+CGG + Chr3:98227821-98227840 MsG0380017591.01.T01:CDS 45.0%
TTCCCTAACATGTGCCCTAA+GGG + Chr3:98229246-98229265 MsG0380017591.01.T01:intron 45.0%
TTCTCAAGCATGCGCAACAT+GGG + Chr3:98227464-98227483 MsG0380017591.01.T01:intron 45.0%
! CACCACACCCATGATTTTTC+TGG + Chr3:98227557-98227576 MsG0380017591.01.T01:intron 45.0%
! GATTTTCCTAGCATCTCTCG+TGG - Chr3:98227766-98227785 None:intergenic 45.0%
! TCGATTGGTCATTGGTGTGT+AGG + Chr3:98228777-98228796 MsG0380017591.01.T01:intron 45.0%
! TGTTTTCCCCACATAGAGCA+TGG + Chr3:98227581-98227600 MsG0380017591.01.T01:intron 45.0%
! TTGGTGACACTGCTCAACTT+GGG + Chr3:98227872-98227891 MsG0380017591.01.T01:CDS 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG - Chr3:98229140-98229159 None:intergenic 45.0%
!! CAATGTTCCCTATTGGCTCA+AGG + Chr3:98228900-98228919 MsG0380017591.01.T01:CDS 45.0%
!! GAGAGGTTCTTGAGTTGAAG+GGG - Chr3:98227919-98227938 None:intergenic 45.0%
!! GGAGAGGTTCTTGAGTTGAA+GGG - Chr3:98227920-98227939 None:intergenic 45.0%
!!! AAAATTTTTTTTTTTTTTGA+AGG + Chr3:98226944-98226963 MsG0380017591.01.T01:intron 5.0%
AACCGATCGACAAGTCCCAA+TGG - Chr3:98227826-98227845 None:intergenic 50.0%
ATGCCCTTAGGGCACATGTT+AGG - Chr3:98229252-98229271 None:intergenic 50.0%
CCATTTCCAAGTGGGTGGAA+AGG + Chr3:98229753-98229772 MsG0380017591.01.T01:CDS 50.0%
CCTTTCCACCCACTTGGAAA+TGG - Chr3:98229756-98229775 None:intergenic 50.0%
CTTGCTTTGCATGCACCCAT+AGG + Chr3:98227337-98227356 MsG0380017591.01.T01:intron 50.0%
GCCTAATGTTGTTGCAGGCT+AGG - Chr3:98227607-98227626 None:intergenic 50.0%
GCCTAGCCTGCAACAACATT+AGG + Chr3:98227603-98227622 MsG0380017591.01.T01:intron 50.0%
GTCCTTGAACAAACACGCGA+CGG - Chr3:98226232-98226251 None:intergenic 50.0%
GTTCCCTAACATGTGCCCTA+AGG + Chr3:98229245-98229264 MsG0380017591.01.T01:intron 50.0%
TCGCGTGTTTGTTCAAGGAC+CGG + Chr3:98226232-98226251 MsG0380017591.01.T01:CDS 50.0%
TGAAGCCATTTCCAAGTGGG+TGG + Chr3:98229748-98229767 MsG0380017591.01.T01:CDS 50.0%
TGACACTGCTCAACTTGGGT+TGG + Chr3:98227876-98227895 MsG0380017591.01.T01:CDS 50.0%
TGCCCTTAGGGCACATGTTA+GGG - Chr3:98229251-98229270 None:intergenic 50.0%
TGGCTGCCTAATGTTGTTGC+AGG - Chr3:98227612-98227631 None:intergenic 50.0%
TTCCTAGCATCTCTCGTGGT+AGG - Chr3:98227762-98227781 None:intergenic 50.0%
! AGACAGGAGTTTTTCCGGAG+AGG - Chr3:98227936-98227955 None:intergenic 50.0%
! AGGGTACCCACATCTAAGAC+AGG - Chr3:98227952-98227971 None:intergenic 50.0%
! CTTGGTGACACTGCTCAACT+TGG + Chr3:98227871-98227890 MsG0380017591.01.T01:CDS 50.0%
! GGGAAAAGGTACGAGGACTT+TGG - Chr3:98227632-98227651 None:intergenic 50.0%
!! CAACTTTCGGGTTGTCCATG+TGG + Chr3:98227785-98227804 MsG0380017591.01.T01:CDS 50.0%
!! CGGAGAGGTTCTTGAGTTGA+AGG - Chr3:98227921-98227940 None:intergenic 50.0%
AGGCTAGGCCATGCTCTATG+TGG - Chr3:98227592-98227611 None:intergenic 55.0%
AGTTGAAGGGGACCCAAACG+AGG - Chr3:98227907-98227926 None:intergenic 55.0%
ATCGTAGGAGCAGGACCTTC+TGG + Chr3:98226257-98226276 MsG0380017591.01.T01:CDS 55.0%
GCAGCTGCTGCTAAACCAGA+AGG - Chr3:98226275-98226294 None:intergenic 55.0%
GCTAGGCCATGCTCTATGTG+GGG - Chr3:98227590-98227609 None:intergenic 55.0%
GGCTAGGCCATGCTCTATGT+GGG - Chr3:98227591-98227610 None:intergenic 55.0%
GGGTTGGATCGTCCTCGTTT+GGG + Chr3:98227892-98227911 MsG0380017591.01.T01:CDS 55.0%
GTCCTACCACGAGAGATGCT+AGG + Chr3:98227757-98227776 MsG0380017591.01.T01:CDS 55.0%
GTTCAAGGACCGGTGATCGT+AGG + Chr3:98226242-98226261 MsG0380017591.01.T01:CDS 55.0%
! CGTTGGTTGATCGTTGCGAC+CGG + Chr3:98226623-98226642 MsG0380017591.01.T01:CDS 55.0%
! TGGGTTGGATCGTCCTCGTT+TGG + Chr3:98227891-98227910 MsG0380017591.01.T01:CDS 55.0%
CGCCGTCGCGTGTTTGTTCA+AGG + Chr3:98226227-98226246 MsG0380017591.01.T01:CDS 60.0%
GGTCCTGCTCCTACGATCAC+CGG - Chr3:98226254-98226273 None:intergenic 60.0%
! GCAGTGGGGGAAAAGGTACG+AGG - Chr3:98227639-98227658 None:intergenic 60.0%
! GGGACTGCAAGGTGCCTCTA+TGG + Chr3:98229812-98229831 MsG0380017591.01.T01:CDS 60.0%
GGACCGGTGATCGTAGGAGC+AGG + Chr3:98226248-98226267 MsG0380017591.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98226131 98230092 98226131 ID=MsG0380017591.01;Name=MsG0380017591.01
Chr3 mRNA 98226131 98230092 98226131 ID=MsG0380017591.01.T01;Parent=MsG0380017591.01;Name=MsG0380017591.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.5|1|1|1|4|193|425
Chr3 exon 98226131 98226847 98226131 ID=MsG0380017591.01.T01:exon:4084;Parent=MsG0380017591.01.T01
Chr3 exon 98227751 98227999 98227751 ID=MsG0380017591.01.T01:exon:4085;Parent=MsG0380017591.01.T01
Chr3 exon 98228799 98228921 98228799 ID=MsG0380017591.01.T01:exon:4086;Parent=MsG0380017591.01.T01
Chr3 exon 98229711 98230092 98229711 ID=MsG0380017591.01.T01:exon:4087;Parent=MsG0380017591.01.T01
Chr3 CDS 98226131 98226847 98226131 ID=MsG0380017591.01.T01:cds;Parent=MsG0380017591.01.T01
Chr3 CDS 98227751 98227999 98227751 ID=MsG0380017591.01.T01:cds;Parent=MsG0380017591.01.T01
Chr3 CDS 98228799 98228921 98228799 ID=MsG0380017591.01.T01:cds;Parent=MsG0380017591.01.T01
Chr3 CDS 98229711 98229899 98229711 ID=MsG0380017591.01.T01:cds;Parent=MsG0380017591.01.T01
Chr3 three_prime_UTR 98229900 98230092 98229900 ID=MsG0380017591.01.T01:three_prime_utr;Parent=MsG0380017591.01.T01
Gene Sequence

>MsG0380017591.01.T01

ATGGACTATTGCTTAAGAGAGTTAGAAGGAAAACAAGCTAATGATCCTTTATTCATGAAAACAACGAAAAACAACAAATCATCATCAACAACGGAACGCCGTCGCGTGTTTGTTCAAGGACCGGTGATCGTAGGAGCAGGACCTTCTGGTTTAGCAGCAGCTGCATGTCTACAACAAAAAAACATTCCATGTGTAATACTAGAAAGATCTAATTGTGTGGCTTCATTATGGCAACTCAAAACCTACGATCGATTACGTCTTCATCTTCCAAAACAATTCTGTGAATTACCCTTTATGGAATTCCCCTCAGATTTCCCAACATACCCTTCAAAACAACAGTTCATAAAGTACTTGGAAGATTATGCAGAGAGTTTTGGTATTAGGCCACGGTTTAATGAGACAGTGCAAAATGCTGAATTTGATGGTAAAATTGGTTGTTGGAGATTGAAGAGTTTTAATAGTAAAGGGGATGTAACTACGGAATATGTTTGTCGTTGGTTGATCGTTGCGACCGGTGAGAATGCAGAAGCTGTTGTGCCTAATATTGAAGGTGTAGATGAATTTGGAGGGGTTATAAGGCATACAAGTTTGTATAAAAGTGGTGAAGAGTTTAGAGGGAAGAAAGTTTTGGTTGTTGGTTGTGGTAATTCTGGTATGGAAGTTTGTTTAGATCTTTGTAACCATGATGCTACTCCTTCTCTTGTTGTTCGAGATTCGGTACACGTCCTACCACGAGAGATGCTAGGAAAATCAACTTTCGGGTTGTCCATGTGGTTACTCAAGTGGTTTCCATTGGGACTTGTCGATCGGTTCTTGCTCATAGTTTCATGGCTTATGCTTGGTGACACTGCTCAACTTGGGTTGGATCGTCCTCGTTTGGGTCCCCTTCAACTCAAGAACCTCTCCGGAAAAACTCCTGTCTTAGATGTGGGTACCCTTGCCAAAATTAAAGGTGGACACATTAAGGTACGACCAAGCATAAAACGGTTAAAACGTCACACAGTGGAATTCGTAGATGGAAGGTCAGAGAATTTTGATGGCATCATATTGGCAACCGGTTACAAAAGCAATGTTCCCTATTGGCTCAAGGAAGAGGATATGTTCTCTAAGGAAGATGGATTTCCTATGAAGCCATTTCCAAGTGGGTGGAAAGGTAAAAATGGACTCTATGCGGTAGGTTTTACAAAAAGGGGACTGCAAGGTGCCTCTATGGATGCCAAGAGAATAGCTGATGACATTGAACTGTGTTTAGAAGCTGAAGCAAAGCATGGATCATAA
Protein sequence

>MsG0380017591.01.T01

MDYCLRELEGKQANDPLFMKTTKNNKSSSTTERRRVFVQGPVIVGAGPSGLAAAACLQQKNIPCVILERSNCVASLWQLKTYDRLRLHLPKQFCELPFMEFPSDFPTYPSKQQFIKYLEDYAESFGIRPRFNETVQNAEFDGKIGCWRLKSFNSKGDVTTEYVCRWLIVATGENAEAVVPNIEGVDEFGGVIRHTSLYKSGEEFRGKKVLVVGCGNSGMEVCLDLCNHDATPSLVVRDSVHVLPREMLGKSTFGLSMWLLKWFPLGLVDRFLLIVSWLMLGDTAQLGLDRPRLGPLQLKNLSGKTPVLDVGTLAKIKGGHIKVRPSIKRLKRHTVEFVDGRSENFDGIILATGYKSNVPYWLKEEDMFSKEDGFPMKPFPSGWKGKNGLYAVGFTKRGLQGASMDAKRIADDIELCLEAEAKHGS*