AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040831.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040831.01.T01 MTR_7g099330 98.798 416 5 0 1 416 1 416 0.0 852
MsG0780040831.01.T01 MTR_1g069275 78.436 422 84 4 1 416 1 421 0.0 687
MsG0780040831.01.T01 MTR_7g099160 97.231 325 9 0 92 416 213 537 0.0 657
MsG0780040831.01.T01 MTR_1g046230 72.642 424 107 2 1 416 1 423 0.0 637
MsG0780040831.01.T01 MTR_1g011630 58.268 381 156 2 17 395 9 388 5.30e-176 497
MsG0780040831.01.T01 MTR_1g008380 58.974 390 153 3 17 400 35 423 1.28e-173 492
MsG0780040831.01.T01 MTR_3g109520 59.536 388 149 3 19 399 34 420 9.54e-171 484
MsG0780040831.01.T01 MTR_6g086870 56.391 399 160 5 9 395 4 400 1.79e-167 476
MsG0780040831.01.T01 MTR_7g107710 45.953 383 195 4 25 400 7 384 7.75e-120 353
MsG0780040831.01.T01 MTR_7g107690 42.480 379 206 4 25 396 9 382 3.77e-114 339
MsG0780040831.01.T01 MTR_5g033260 45.093 377 195 4 25 394 7 378 1.10e-113 338
MsG0780040831.01.T01 MTR_8g432640 45.067 375 194 3 25 392 7 376 1.98e-112 335
MsG0780040831.01.T01 MTR_3g088955 43.850 374 196 4 25 390 8 375 2.98e-112 335
MsG0780040831.01.T01 MTR_3g088925 43.432 373 199 3 25 390 8 375 1.38e-111 333
MsG0780040831.01.T01 MTR_3g088945 43.164 373 200 3 25 390 8 375 5.92e-111 331
MsG0780040831.01.T01 MTR_4g051642 43.968 373 196 5 25 390 8 374 9.54e-109 326
MsG0780040831.01.T01 MTR_3g096030 38.068 176 79 2 25 194 7 158 6.38e-36 129
MsG0780040831.01.T01 MTR_3g437580 23.140 242 139 6 26 228 15 248 2.07e-11 65.5
MsG0780040831.01.T01 MTR_3g437580 23.140 242 139 6 26 228 15 248 3.30e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040831.01.T01 AT4G28720 75.059 425 95 4 1 415 1 424 0.0 672
MsG0780040831.01.T01 AT5G43890 72.813 423 105 4 1 414 1 422 0.0 644
MsG0780040831.01.T01 AT1G04180 72.381 420 109 4 1 414 1 419 0.0 637
MsG0780040831.01.T01 AT1G04610 68.019 419 124 2 7 416 20 437 0.0 603
MsG0780040831.01.T01 AT2G33230 66.667 423 130 3 3 416 11 431 0.0 569
MsG0780040831.01.T01 AT5G25620 60.199 402 151 5 9 402 16 416 5.61e-178 503
MsG0780040831.01.T01 AT5G25620 60.150 399 150 5 9 399 16 413 6.25e-177 501
MsG0780040831.01.T01 AT5G11320 58.438 397 159 2 19 415 12 402 4.97e-173 490
MsG0780040831.01.T01 AT4G32540 56.589 387 165 3 15 399 12 397 1.37e-167 476
MsG0780040831.01.T01 AT4G32540 56.041 389 166 4 15 399 12 399 7.72e-166 472
MsG0780040831.01.T01 AT4G13260 57.218 381 155 3 17 390 21 400 3.56e-162 462
MsG0780040831.01.T01 AT5G11320 59.752 323 129 1 19 341 12 333 1.68e-144 416
MsG0780040831.01.T01 AT4G13260 56.897 290 119 1 17 300 21 310 4.49e-125 364
MsG0780040831.01.T01 AT1G48910 45.308 373 192 4 25 390 6 373 4.06e-119 352
MsG0780040831.01.T01 AT1G21430 47.467 375 180 7 25 390 10 376 4.90e-117 347
MsG0780040831.01.T01 AT4G13260 56.207 290 119 3 108 390 9 297 4.14e-110 326
MsG0780040831.01.T01 AT1G65860 26.201 229 129 7 26 222 15 235 5.89e-15 77.0
MsG0780040831.01.T01 AT5G07800 25.346 217 122 5 26 202 18 234 8.82e-13 70.1
MsG0780040831.01.T01 AT5G45180 25.501 349 197 12 25 332 14 340 5.90e-12 67.8

Find 94 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAAAGTCCTTCAATTTC+AGG 0.167964 7:-83111231 None:intergenic
TTCTCTCACGCCGTTGCATT+TGG 0.196198 7:+83110800 MsG0780040831.01.T01:CDS
GTTAAAATTGCACAAGATAT+TGG 0.210104 7:+83112287 MsG0780040831.01.T01:CDS
TGTTTCTTTGAAGGGTATTC+AGG 0.234534 7:-83111027 None:intergenic
CCATGTGGAAATGGCATCTT+TGG 0.241543 7:-83112191 None:intergenic
TTCACAAAGAGAGGGCTTTC+TGG 0.253444 7:+83112248 MsG0780040831.01.T01:CDS
CAATGTCCCTTCTTGGCTTC+AGG 0.262510 7:+83111874 MsG0780040831.01.T01:CDS
CACAAGATATTGGAAAAGTT+TGG 0.264533 7:+83112297 MsG0780040831.01.T01:CDS
GTTGTTGGATGTGGAAATTC+TGG 0.276886 7:+83111324 MsG0780040831.01.T01:CDS
ACCGCAGCAATGTCCCTTCT+TGG 0.278978 7:+83111867 MsG0780040831.01.T01:CDS
GTGCTACCTAGAGAAATATT+TGG 0.304479 7:+83111527 MsG0780040831.01.T01:CDS
GGTAGTTGACAGAATTGTTT+TGG 0.312145 7:-83110979 None:intergenic
TCTCTCACGCCGTTGCATTT+GGG 0.312281 7:+83110801 MsG0780040831.01.T01:CDS
AGAAGGAAAGACACCGGTTT+TGG 0.315038 7:+83111706 MsG0780040831.01.T01:CDS
GGTGAAGTTGAGCTTGTTAA+TGG 0.336155 7:+83111803 MsG0780040831.01.T01:CDS
CGCCGTTGCATTTGGGTCAA+TGG 0.349348 7:+83110808 MsG0780040831.01.T01:CDS
CCCTTCCAACCATGTGGAAA+TGG 0.354454 7:-83112200 None:intergenic
GAACACACTCGTTGAATTGC+GGG 0.355699 7:-83111095 None:intergenic
CATGGTTGGAAGGGAAATTC+AGG 0.364067 7:+83112209 MsG0780040831.01.T01:CDS
TATGCTTGTGATTACAAGTC+AGG 0.381966 7:+83111273 MsG0780040831.01.T01:CDS
GGAAAGAAAGTTCTTGTTGT+TGG 0.397099 7:+83111309 MsG0780040831.01.T01:CDS
GGGTATTCAGGGAAATCTTC+AGG 0.406351 7:-83111015 None:intergenic
CTTATGAATTGTTTCTTTGA+AGG 0.406911 7:-83111036 None:intergenic
TCTTCAGGCATTGGAAGGTT+AGG 0.415876 7:-83111000 None:intergenic
TCATCATGCTTTACCTTCCA+TGG 0.420618 7:+83111374 MsG0780040831.01.T01:CDS
TGGTATCAAAAGGCCTTCAA+TGG 0.420704 7:+83111661 MsG0780040831.01.T01:CDS
AAAGTTCTTGTTGTTGGATG+TGG 0.420882 7:+83111315 MsG0780040831.01.T01:CDS
ATCATAGGTGCAGGTCCATC+TGG 0.430455 7:+83110838 MsG0780040831.01.T01:CDS
AGGGACATTGCTGCGGTAAC+CGG 0.431024 7:-83111861 None:intergenic
ATCAAAAGGTTTAATAATCA+TGG 0.435107 7:+83111782 MsG0780040831.01.T01:CDS
TTCCATGGTTGTTCGTAGCT+CGG 0.440887 7:+83111389 MsG0780040831.01.T01:CDS
ATGAAGTTGAGTACATTTGT+AGG 0.449172 7:+83111166 MsG0780040831.01.T01:CDS
AACTTCAAAGGACCCATTGA+AGG 0.449923 7:-83111674 None:intergenic
TTATGAATTGTTTCTTTGAA+GGG 0.463097 7:-83111035 None:intergenic
CTGATTGCATAGCATCACTA+TGG 0.465618 7:+83110920 MsG0780040831.01.T01:CDS
GTTTCTTTGAAGGGTATTCA+GGG 0.466361 7:-83111026 None:intergenic
TCAGGGAAATCTTCAGGCAT+TGG 0.472081 7:-83111009 None:intergenic
TGTTGAAGTGGTTACCACTT+TGG 0.479523 7:+83111579 MsG0780040831.01.T01:CDS
GATATTCCAAATATTTCTCT+AGG 0.498261 7:-83111533 None:intergenic
TCTGTGTTCTTCAACTTCAA+AGG 0.498901 7:-83111686 None:intergenic
AGGTGGCTTGTTGTTGCTAC+CGG 0.499132 7:+83111186 MsG0780040831.01.T01:CDS
GAAGGACTTTCTGAATTCAA+AGG 0.499261 7:+83111240 MsG0780040831.01.T01:CDS
GCCATTTCCACATGGTTGGA+AGG 0.503171 7:+83112199 MsG0780040831.01.T01:CDS
AGATGCCATTTCCACATGGT+TGG 0.512278 7:+83112195 MsG0780040831.01.T01:CDS
GATGCAGTTGTTCTTGCTAC+CGG 0.513400 7:+83111842 MsG0780040831.01.T01:CDS
AAAGCACCAATGTCCAAAAC+CGG 0.515634 7:-83111719 None:intergenic
GTCAATGGACCTGTGATCAT+AGG 0.520464 7:+83110823 MsG0780040831.01.T01:CDS
CTTAACCCTCCACAATCCAC+TGG 0.522153 7:-83111139 None:intergenic
CATGTGGAAATGGCATCTTT+GGG 0.531409 7:-83112190 None:intergenic
AATTCAGGACTATATGCTGT+AGG 0.534469 7:+83112224 MsG0780040831.01.T01:CDS
ATGCTTGTGATTACAAGTCA+GGG 0.545079 7:+83111274 MsG0780040831.01.T01:CDS
TGTGTTACTCCTGAAATTGA+AGG 0.546438 7:+83111222 MsG0780040831.01.T01:CDS
GGTATCAAAAGGCCTTCAAT+GGG 0.549973 7:+83111662 MsG0780040831.01.T01:CDS
AGGTACAACATTTATGTCAC+CGG 0.553155 7:-83111756 None:intergenic
CCATTTCCACATGGTTGGAA+GGG 0.558378 7:+83112200 MsG0780040831.01.T01:CDS
ATATTCACCTGAAGCCAAGA+AGG 0.558667 7:-83111881 None:intergenic
TGAACACACTCGTTGAATTG+CGG 0.561991 7:-83111096 None:intergenic
GGAAATCTTCAGGCATTGGA+AGG 0.566772 7:-83111005 None:intergenic
ATGTTGTACCTGGAATCAAA+AGG 0.567602 7:+83111768 MsG0780040831.01.T01:CDS
GGACCTGTGATCATAGGTGC+AGG 0.569251 7:+83110829 MsG0780040831.01.T01:CDS
TAGCGGTTATGATGTTGAAG+TGG 0.573120 7:+83111567 MsG0780040831.01.T01:CDS
GCTTTGGAGAAAATTAGATC+CGG 0.578995 7:+83111737 MsG0780040831.01.T01:CDS
GCTGTAGGGTTCACAAAGAG+AGG 0.580060 7:+83112239 MsG0780040831.01.T01:CDS
GCTGCCGTTGCAAGACCAGA+TGG 0.585259 7:-83110853 None:intergenic
GTGAAGTTTCAATCTGTCGT+AGG 0.589564 7:-83110953 None:intergenic
ATTCAGGACTATATGCTGTA+GGG 0.590290 7:+83112225 MsG0780040831.01.T01:CDS
TTGAAGTTGAAGAACACAGA+AGG 0.590910 7:+83111689 MsG0780040831.01.T01:CDS
CCAAAGATGCCATTTCCACA+TGG 0.597297 7:+83112191 MsG0780040831.01.T01:CDS
GCAGCATGTCTTAGAGAACA+AGG 0.601445 7:+83110871 MsG0780040831.01.T01:CDS
TGGATGTGGAAATTCTGGAA+TGG 0.605555 7:+83111329 MsG0780040831.01.T01:CDS
AAGTTGAGTACATTTGTAGG+TGG 0.605781 7:+83111169 MsG0780040831.01.T01:CDS
GGTGACATAAATGTTGTACC+TGG 0.608839 7:+83111758 MsG0780040831.01.T01:CDS
TATTCACCTGAAGCCAAGAA+GGG 0.613263 7:-83111880 None:intergenic
CTGTAGGGTTCACAAAGAGA+GGG 0.613353 7:+83112240 MsG0780040831.01.T01:CDS
ATGATGAAACCAGTGGATTG+TGG 0.614186 7:+83111130 MsG0780040831.01.T01:CDS
GGACCTGCACCTATGATCAC+AGG 0.615165 7:-83110832 None:intergenic
GTCCATTGACCCAAATGCAA+CGG 0.615198 7:-83110810 None:intergenic
GTGGTTACCACTTTGGATTG+TGG 0.615333 7:+83111586 MsG0780040831.01.T01:CDS
AGCTCTTTCGAGAACAACGA+AGG 0.625793 7:-83110899 None:intergenic
AGGTCCATCTGGTCTTGCAA+CGG 0.627266 7:+83110849 MsG0780040831.01.T01:CDS
GAATTTCCCTTCCAACCATG+TGG 0.635313 7:-83112206 None:intergenic
GAGCTACGAACAACCATGGA+AGG 0.637115 7:-83111387 None:intergenic
GCAACGTCTATGACAAGCAG+TGG 0.639607 7:-83112351 None:intergenic
AGCTTGTCCACAATCCAAAG+TGG 0.643807 7:-83111593 None:intergenic
TACCGAGCTACGAACAACCA+TGG 0.644442 7:-83111391 None:intergenic
CAGCATGTCTTAGAGAACAA+GGG 0.645300 7:+83110872 MsG0780040831.01.T01:CDS
AGCATGTCTTAGAGAACAAG+GGG 0.647019 7:+83110873 MsG0780040831.01.T01:CDS
GCTAAGTATGATGAAACCAG+TGG 0.647995 7:+83111123 MsG0780040831.01.T01:CDS
AACGGCGTGAGAGAAAGTCT+TGG 0.654245 7:-83110792 None:intergenic
GCCAAGAAGGGACATTGCTG+CGG 0.662896 7:-83111868 None:intergenic
GCTCTTTCGAGAACAACGAA+GGG 0.679788 7:-83110898 None:intergenic
ATGAAACCAGTGGATTGTGG+AGG 0.691994 7:+83111133 MsG0780040831.01.T01:CDS
GAACACAGAAGGAAAGACAC+CGG 0.709214 7:+83111700 MsG0780040831.01.T01:CDS
TGAAACCAGTGGATTGTGGA+GGG 0.710675 7:+83111134 MsG0780040831.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAGTAACTAATTAATTT+TGG + Chr7:83112125-83112144 MsG0780040831.01.T01:intron 15.0%
!!! CATAGTAAATTTTTTAACTT+AGG + Chr7:83111455-83111474 MsG0780040831.01.T01:intron 15.0%
!! ATCAAAAGGTTTAATAATCA+TGG + Chr7:83111782-83111801 MsG0780040831.01.T01:CDS 20.0%
!!! AATATCAACTTTTGAATTAG+CGG + Chr7:83111550-83111569 MsG0780040831.01.T01:CDS 20.0%
!!! TAATTTTGGTTATGTTATAC+AGG + Chr7:83112139-83112158 MsG0780040831.01.T01:intron 20.0%
!!! TTATGAATTGTTTCTTTGAA+GGG - Chr7:83111038-83111057 None:intergenic 20.0%
! AGGATGAAAAAAATCTAACT+GGG + Chr7:83111475-83111494 MsG0780040831.01.T01:intron 25.0%
! GATATTCCAAATATTTCTCT+AGG - Chr7:83111536-83111555 None:intergenic 25.0%
! GTTAAAATTGCACAAGATAT+TGG + Chr7:83112287-83112306 MsG0780040831.01.T01:CDS 25.0%
! TAGGATGAAAAAAATCTAAC+TGG + Chr7:83111474-83111493 MsG0780040831.01.T01:intron 25.0%
! TGGAAAAATATGGTATCAAA+AGG + Chr7:83111651-83111670 MsG0780040831.01.T01:CDS 25.0%
!! CTTATGAATTGTTTCTTTGA+AGG - Chr7:83111039-83111058 None:intergenic 25.0%
!!! ATTTGTTAGCATAGTTTTCA+AGG - Chr7:83111065-83111084 None:intergenic 25.0%
!!! ATTTTGACATGGTTCATTTT+GGG + Chr7:83111623-83111642 MsG0780040831.01.T01:CDS 25.0%
!!! TGTTCTGTTTTTTTTACTAC+AGG + Chr7:83111499-83111518 MsG0780040831.01.T01:intron 25.0%
!!! TTATTAAACCTTTTGATTCC+AGG - Chr7:83111779-83111798 None:intergenic 25.0%
ATGAAGTTGAGTACATTTGT+AGG + Chr7:83111166-83111185 MsG0780040831.01.T01:CDS 30.0%
ATTAATACTGACACAGATAC+CGG - Chr7:83111433-83111452 None:intergenic 30.0%
CACAAGATATTGGAAAAGTT+TGG + Chr7:83112297-83112316 MsG0780040831.01.T01:CDS 30.0%
TTTGGTTATGTTATACAGGA+AGG + Chr7:83112143-83112162 MsG0780040831.01.T01:intron 30.0%
! AAGTCAGGGAAAAATTTTGA+AGG + Chr7:83111288-83111307 MsG0780040831.01.T01:CDS 30.0%
! GGTGAATTTTTCTCCAAAAA+TGG + Chr7:83112164-83112183 MsG0780040831.01.T01:CDS 30.0%
!! GATTTTGACATGGTTCATTT+TGG + Chr7:83111622-83111641 MsG0780040831.01.T01:CDS 30.0%
!!! AGCTTTTGTTGATTTTGACA+TGG + Chr7:83111612-83111631 MsG0780040831.01.T01:CDS 30.0%
AAGTTGAGTACATTTGTAGG+TGG + Chr7:83111169-83111188 MsG0780040831.01.T01:CDS 35.0%
AATTCAGGACTATATGCTGT+AGG + Chr7:83112224-83112243 MsG0780040831.01.T01:CDS 35.0%
AGGTACAACATTTATGTCAC+CGG - Chr7:83111759-83111778 None:intergenic 35.0%
ATGCTTGTGATTACAAGTCA+GGG + Chr7:83111274-83111293 MsG0780040831.01.T01:CDS 35.0%
ATGTTGTACCTGGAATCAAA+AGG + Chr7:83111768-83111787 MsG0780040831.01.T01:CDS 35.0%
ATTCAGGACTATATGCTGTA+GGG + Chr7:83112225-83112244 MsG0780040831.01.T01:CDS 35.0%
GAAGGACTTTCTGAATTCAA+AGG + Chr7:83111240-83111259 MsG0780040831.01.T01:CDS 35.0%
GTGCTACCTAGAGAAATATT+TGG + Chr7:83111527-83111546 MsG0780040831.01.T01:CDS 35.0%
TATGCTTGTGATTACAAGTC+AGG + Chr7:83111273-83111292 MsG0780040831.01.T01:CDS 35.0%
TCAGAAAGTCCTTCAATTTC+AGG - Chr7:83111234-83111253 None:intergenic 35.0%
TCTGGCTAAATCTTAGTTGT+TGG + Chr7:83111961-83111980 MsG0780040831.01.T01:intron 35.0%
TCTGTGTTCTTCAACTTCAA+AGG - Chr7:83111689-83111708 None:intergenic 35.0%
TTGAAGTTGAAGAACACAGA+AGG + Chr7:83111689-83111708 MsG0780040831.01.T01:CDS 35.0%
TTGGGTGACATGGAAAAATA+TGG + Chr7:83111641-83111660 MsG0780040831.01.T01:CDS 35.0%
! ACATGTCTTTTTCTATCCTC+CGG - Chr7:83112036-83112055 None:intergenic 35.0%
! CATCTTTGGGTATCCATTTT+TGG - Chr7:83112180-83112199 None:intergenic 35.0%
! GGAAAGAAAGTTCTTGTTGT+TGG + Chr7:83111309-83111328 MsG0780040831.01.T01:CDS 35.0%
! GGTAGTTGACAGAATTGTTT+TGG - Chr7:83110982-83111001 None:intergenic 35.0%
! TCCGACAACAAAGATTTTAC+CGG + Chr7:83112014-83112033 MsG0780040831.01.T01:intron 35.0%
! TCCGGTAAAATCTTTGTTGT+CGG - Chr7:83112018-83112037 None:intergenic 35.0%
! TGTGTTACTCCTGAAATTGA+AGG + Chr7:83111222-83111241 MsG0780040831.01.T01:CDS 35.0%
!! AAAGTTCTTGTTGTTGGATG+TGG + Chr7:83111315-83111334 MsG0780040831.01.T01:CDS 35.0%
!! GCTTTGGAGAAAATTAGATC+CGG + Chr7:83111737-83111756 MsG0780040831.01.T01:CDS 35.0%
!! GTTTCTTTGAAGGGTATTCA+GGG - Chr7:83111029-83111048 None:intergenic 35.0%
!! TGTTTCTTTGAAGGGTATTC+AGG - Chr7:83111030-83111049 None:intergenic 35.0%
!!! GTAAGTTCTTTTTCAGTGTC+CGG + Chr7:83111411-83111430 MsG0780040831.01.T01:intron 35.0%
!!! GTTGACAGAATTGTTTTGGA+AGG - Chr7:83110978-83110997 None:intergenic 35.0%
AACTTCAAAGGACCCATTGA+AGG - Chr7:83111677-83111696 None:intergenic 40.0%
AGCATGTCTTAGAGAACAAG+GGG + Chr7:83110873-83110892 MsG0780040831.01.T01:CDS 40.0%
ATATTCACCTGAAGCCAAGA+AGG - Chr7:83111884-83111903 None:intergenic 40.0%
CAACTAAGATTTAGCCAGAG+CGG - Chr7:83111960-83111979 None:intergenic 40.0%
CAGCATGTCTTAGAGAACAA+GGG + Chr7:83110872-83110891 MsG0780040831.01.T01:CDS 40.0%
CATGTGGAAATGGCATCTTT+GGG - Chr7:83112193-83112212 None:intergenic 40.0%
CTGATTGCATAGCATCACTA+TGG + Chr7:83110920-83110939 MsG0780040831.01.T01:CDS 40.0%
GCTAAGTATGATGAAACCAG+TGG + Chr7:83111123-83111142 MsG0780040831.01.T01:CDS 40.0%
GGTATCAAAAGGCCTTCAAT+GGG + Chr7:83111662-83111681 MsG0780040831.01.T01:CDS 40.0%
GGTGACATAAATGTTGTACC+TGG + Chr7:83111758-83111777 MsG0780040831.01.T01:CDS 40.0%
GTGAAGTTTCAATCTGTCGT+AGG - Chr7:83110956-83110975 None:intergenic 40.0%
GTTGTTGGATGTGGAAATTC+TGG + Chr7:83111324-83111343 MsG0780040831.01.T01:CDS 40.0%
TAGCGGTTATGATGTTGAAG+TGG + Chr7:83111567-83111586 MsG0780040831.01.T01:CDS 40.0%
TATTCACCTGAAGCCAAGAA+GGG - Chr7:83111883-83111902 None:intergenic 40.0%
TCATCATGCTTTACCTTCCA+TGG + Chr7:83111374-83111393 MsG0780040831.01.T01:CDS 40.0%
TGAACACACTCGTTGAATTG+CGG - Chr7:83111099-83111118 None:intergenic 40.0%
TGGTATCAAAAGGCCTTCAA+TGG + Chr7:83111661-83111680 MsG0780040831.01.T01:CDS 40.0%
TGTTGAAGTGGTTACCACTT+TGG + Chr7:83111579-83111598 MsG0780040831.01.T01:CDS 40.0%
! AAAGCACCAATGTCCAAAAC+CGG - Chr7:83111722-83111741 None:intergenic 40.0%
! AGTTGACTTAGATCCTCTTC+TGG + Chr7:83111934-83111953 MsG0780040831.01.T01:intron 40.0%
! GACAACAAAGATTTTACCGG+AGG + Chr7:83112017-83112036 MsG0780040831.01.T01:intron 40.0%
! TGGATGTGGAAATTCTGGAA+TGG + Chr7:83111329-83111348 MsG0780040831.01.T01:CDS 40.0%
!! ATGATGAAACCAGTGGATTG+TGG + Chr7:83111130-83111149 MsG0780040831.01.T01:CDS 40.0%
!! ATGGTTCATTTTGGGTGACA+TGG + Chr7:83111631-83111650 MsG0780040831.01.T01:CDS 40.0%
!! GGTGAAGTTGAGCTTGTTAA+TGG + Chr7:83111803-83111822 MsG0780040831.01.T01:CDS 40.0%
AGCTCTTTCGAGAACAACGA+AGG - Chr7:83110902-83110921 None:intergenic 45.0%
AGCTTGTCCACAATCCAAAG+TGG - Chr7:83111596-83111615 None:intergenic 45.0%
CATGGTTGGAAGGGAAATTC+AGG + Chr7:83112209-83112228 MsG0780040831.01.T01:CDS 45.0%
CCATGTGGAAATGGCATCTT+TGG - Chr7:83112194-83112213 None:intergenic 45.0%
CCATTTCCACATGGTTGGAA+GGG + Chr7:83112200-83112219 MsG0780040831.01.T01:CDS 45.0%
CTGTAGGGTTCACAAAGAGA+GGG + Chr7:83112240-83112259 MsG0780040831.01.T01:CDS 45.0%
GAACACACTCGTTGAATTGC+GGG - Chr7:83111098-83111117 None:intergenic 45.0%
GAACACAGAAGGAAAGACAC+CGG + Chr7:83111700-83111719 MsG0780040831.01.T01:CDS 45.0%
GAATTTCCCTTCCAACCATG+TGG - Chr7:83112209-83112228 None:intergenic 45.0%
GATGCAGTTGTTCTTGCTAC+CGG + Chr7:83111842-83111861 MsG0780040831.01.T01:CDS 45.0%
GCAGCATGTCTTAGAGAACA+AGG + Chr7:83110871-83110890 MsG0780040831.01.T01:CDS 45.0%
GCTCTTTCGAGAACAACGAA+GGG - Chr7:83110901-83110920 None:intergenic 45.0%
GGGTATTCAGGGAAATCTTC+AGG - Chr7:83111018-83111037 None:intergenic 45.0%
GTCAATGGACCTGTGATCAT+AGG + Chr7:83110823-83110842 MsG0780040831.01.T01:CDS 45.0%
GTCCATTGACCCAAATGCAA+CGG - Chr7:83110813-83110832 None:intergenic 45.0%
GTGGTTACCACTTTGGATTG+TGG + Chr7:83111586-83111605 MsG0780040831.01.T01:CDS 45.0%
TCAGGGAAATCTTCAGGCAT+TGG - Chr7:83111012-83111031 None:intergenic 45.0%
TTCACAAAGAGAGGGCTTTC+TGG + Chr7:83112248-83112267 MsG0780040831.01.T01:CDS 45.0%
TTCCATGGTTGTTCGTAGCT+CGG + Chr7:83111389-83111408 MsG0780040831.01.T01:CDS 45.0%
! AACACACTCAGCATTTTCGC+CGG - Chr7:83111208-83111227 None:intergenic 45.0%
! AGATGCCATTTCCACATGGT+TGG + Chr7:83112195-83112214 MsG0780040831.01.T01:CDS 45.0%
! CCAAAGATGCCATTTCCACA+TGG + Chr7:83112191-83112210 MsG0780040831.01.T01:CDS 45.0%
!! ATGAAACCAGTGGATTGTGG+AGG + Chr7:83111133-83111152 MsG0780040831.01.T01:CDS 45.0%
!! GGAAATCTTCAGGCATTGGA+AGG - Chr7:83111008-83111027 None:intergenic 45.0%
!! TCTTCAGGCATTGGAAGGTT+AGG - Chr7:83111003-83111022 None:intergenic 45.0%
!! TGAAACCAGTGGATTGTGGA+GGG + Chr7:83111134-83111153 MsG0780040831.01.T01:CDS 45.0%
!!! AAGACACCGGTTTTGGACAT+TGG + Chr7:83111713-83111732 MsG0780040831.01.T01:CDS 45.0%
!!! AGAAGGAAAGACACCGGTTT+TGG + Chr7:83111706-83111725 MsG0780040831.01.T01:CDS 45.0%
!!! GGTTTTGGACATTGGTGCTT+TGG + Chr7:83111721-83111740 MsG0780040831.01.T01:CDS 45.0%
AACGGCGTGAGAGAAAGTCT+TGG - Chr7:83110795-83110814 None:intergenic 50.0%
ATCATAGGTGCAGGTCCATC+TGG + Chr7:83110838-83110857 MsG0780040831.01.T01:CDS 50.0%
CAATGTCCCTTCTTGGCTTC+AGG + Chr7:83111874-83111893 MsG0780040831.01.T01:CDS 50.0%
CCCTTCCAACCATGTGGAAA+TGG - Chr7:83112203-83112222 None:intergenic 50.0%
CTTAACCCTCCACAATCCAC+TGG - Chr7:83111142-83111161 None:intergenic 50.0%
GAGCTACGAACAACCATGGA+AGG - Chr7:83111390-83111409 None:intergenic 50.0%
GCAACGTCTATGACAAGCAG+TGG - Chr7:83112354-83112373 None:intergenic 50.0%
GCCATTTCCACATGGTTGGA+AGG + Chr7:83112199-83112218 MsG0780040831.01.T01:CDS 50.0%
GCTGTAGGGTTCACAAAGAG+AGG + Chr7:83112239-83112258 MsG0780040831.01.T01:CDS 50.0%
TACCGAGCTACGAACAACCA+TGG - Chr7:83111394-83111413 None:intergenic 50.0%
TCTCTCACGCCGTTGCATTT+GGG + Chr7:83110801-83110820 MsG0780040831.01.T01:CDS 50.0%
TTCTCTCACGCCGTTGCATT+TGG + Chr7:83110800-83110819 MsG0780040831.01.T01:CDS 50.0%
!! AGGTCCATCTGGTCTTGCAA+CGG + Chr7:83110849-83110868 MsG0780040831.01.T01:CDS 50.0%
!! AGGTGGCTTGTTGTTGCTAC+CGG + Chr7:83111186-83111205 MsG0780040831.01.T01:CDS 50.0%
ACCGCAGCAATGTCCCTTCT+TGG + Chr7:83111867-83111886 MsG0780040831.01.T01:CDS 55.0%
AGGGACATTGCTGCGGTAAC+CGG - Chr7:83111864-83111883 None:intergenic 55.0%
CGCCGTTGCATTTGGGTCAA+TGG + Chr7:83110808-83110827 MsG0780040831.01.T01:CDS 55.0%
GCCAAGAAGGGACATTGCTG+CGG - Chr7:83111871-83111890 None:intergenic 55.0%
GGACCTGCACCTATGATCAC+AGG - Chr7:83110835-83110854 None:intergenic 55.0%
GGACCTGTGATCATAGGTGC+AGG + Chr7:83110829-83110848 MsG0780040831.01.T01:CDS 55.0%
AGATCCTCTTCTGGCCGCTC+TGG + Chr7:83111943-83111962 MsG0780040831.01.T01:intron 60.0%
GCTGCCGTTGCAAGACCAGA+TGG - Chr7:83110856-83110875 None:intergenic 60.0%
TTAGCCAGAGCGGCCAGAAG+AGG - Chr7:83111950-83111969 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 83110763 83112388 83110763 ID=MsG0780040831.01;Name=MsG0780040831.01
Chr7 mRNA 83110763 83112388 83110763 ID=MsG0780040831.01.T01;Parent=MsG0780040831.01;Name=MsG0780040831.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|416
Chr7 exon 83110763 83111410 83110763 ID=MsG0780040831.01.T01:exon:1497;Parent=MsG0780040831.01.T01
Chr7 exon 83111521 83111895 83111521 ID=MsG0780040831.01.T01:exon:1498;Parent=MsG0780040831.01.T01
Chr7 exon 83112161 83112388 83112161 ID=MsG0780040831.01.T01:exon:1499;Parent=MsG0780040831.01.T01
Chr7 CDS 83110763 83111410 83110763 ID=MsG0780040831.01.T01:cds;Parent=MsG0780040831.01.T01
Chr7 CDS 83111521 83111895 83111521 ID=MsG0780040831.01.T01:cds;Parent=MsG0780040831.01.T01
Chr7 CDS 83112161 83112388 83112161 ID=MsG0780040831.01.T01:cds;Parent=MsG0780040831.01.T01
Gene Sequence

>MsG0780040831.01.T01

ATGGAAAATTTATTTCGTCTAGCTGATCACCAAGACTTTCTCTCACGCCGTTGCATTTGGGTCAATGGACCTGTGATCATAGGTGCAGGTCCATCTGGTCTTGCAACGGCAGCATGTCTTAGAGAACAAGGGGTACCCTTCGTTGTTCTCGAAAGAGCTGATTGCATAGCATCACTATGGCAAAAAAGAACCTACGACAGATTGAAACTTCACCTTCCAAAACAATTCTGTCAACTACCTAACCTTCCAATGCCTGAAGATTTCCCTGAATACCCTTCAAAGAAACAATTCATAAGCTACCTTGAAAACTATGCTAACAAATTTGAAATCAACCCGCAATTCAACGAGTGTGTTCAATCTGCTAAGTATGATGAAACCAGTGGATTGTGGAGGGTTAAGACAAATGAAGTTGAGTACATTTGTAGGTGGCTTGTTGTTGCTACCGGCGAAAATGCTGAGTGTGTTACTCCTGAAATTGAAGGACTTTCTGAATTCAAAGGTGAAGTTGTTTATGCTTGTGATTACAAGTCAGGGAAAAATTTTGAAGGAAAGAAAGTTCTTGTTGTTGGATGTGGAAATTCTGGAATGGAACTCTCACTTGATCTTAGCAATCATCATGCTTTACCTTCCATGGTTGTTCGTAGCTCGGTTCATGTGCTACCTAGAGAAATATTTGGAATATCAACTTTTGAATTAGCGGTTATGATGTTGAAGTGGTTACCACTTTGGATTGTGGACAAGCTTTTGTTGATTTTGACATGGTTCATTTTGGGTGACATGGAAAAATATGGTATCAAAAGGCCTTCAATGGGTCCTTTGAAGTTGAAGAACACAGAAGGAAAGACACCGGTTTTGGACATTGGTGCTTTGGAGAAAATTAGATCCGGTGACATAAATGTTGTACCTGGAATCAAAAGGTTTAATAATCATGGTGAAGTTGAGCTTGTTAATGGTGAAAAACTTGATATTGATGCAGTTGTTCTTGCTACCGGTTACCGCAGCAATGTCCCTTCTTGGCTTCAGGAAGGTGAATTTTTCTCCAAAAATGGATACCCAAAGATGCCATTTCCACATGGTTGGAAGGGAAATTCAGGACTATATGCTGTAGGGTTCACAAAGAGAGGGCTTTCTGGTGCTTCATCTGATGCTGTTAAAATTGCACAAGATATTGGAAAAGTTTGGAAACAAGAGACAAAACAAAAGAAGCAACGCACCACTGCTTGTCATAGACGTTGCATTTCACAATTCTAA

Protein sequence

>MsG0780040831.01.T01

MENLFRLADHQDFLSRRCIWVNGPVIIGAGPSGLATAACLREQGVPFVVLERADCIASLWQKRTYDRLKLHLPKQFCQLPNLPMPEDFPEYPSKKQFISYLENYANKFEINPQFNECVQSAKYDETSGLWRVKTNEVEYICRWLVVATGENAECVTPEIEGLSEFKGEVVYACDYKSGKNFEGKKVLVVGCGNSGMELSLDLSNHHALPSMVVRSSVHVLPREIFGISTFELAVMMLKWLPLWIVDKLLLILTWFILGDMEKYGIKRPSMGPLKLKNTEGKTPVLDIGALEKIRSGDINVVPGIKRFNNHGEVELVNGEKLDIDAVVLATGYRSNVPSWLQEGEFFSKNGYPKMPFPHGWKGNSGLYAVGFTKRGLSGASSDAVKIAQDIGKVWKQETKQKKQRTTACHRRCISQF*