Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040831.01.T01 | XP_003625456.1 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0 | 852 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040831.01.T01 | Q9SVU0 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0 | 672 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040831.01.T01 | G7KZI9 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180001513.01 | MsG0780040831.01 | 0.806352 | 8.576543e-50 | 4.644829e-47 |
MsG0180004610.01 | MsG0780040831.01 | 0.808446 | 3.085186e-50 | 1.764478e-47 |
MsG0780040497.01 | MsG0780040831.01 | 0.809839 | 1.551861e-50 | 9.209031e-48 |
MsG0780040498.01 | MsG0780040831.01 | 0.806099 | 9.696557e-50 | 5.217660e-47 |
MsG0780040831.01 | MsG0780041180.01 | 0.808833 | 2.549718e-50 | 1.472992e-47 |
MsG0780040831.01 | MsG0880042122.01 | 0.812037 | 5.186251e-51 | 3.261714e-48 |
MsG0780040831.01 | MsG0880043212.01 | 0.811042 | 8.532260e-51 | 5.226845e-48 |
MsG0380013843.01 | MsG0780040831.01 | 0.820214 | 7.719944e-53 | 6.070588e-50 |
MsG0680031474.01 | MsG0780040831.01 | 0.804080 | 2.564461e-49 | 1.310177e-46 |
MsG0680034418.01 | MsG0780040831.01 | 0.824084 | 9.774337e-54 | 8.570832e-51 |
MsG0480020810.01 | MsG0780040831.01 | 0.816944 | 4.258603e-52 | 3.059939e-49 |
MsG0480021133.01 | MsG0780040831.01 | 0.804042 | 2.611192e-49 | 1.332758e-46 |
MsG0480021396.01 | MsG0780040831.01 | 0.803316 | 3.694139e-49 | 1.850542e-46 |
MsG0480022428.01 | MsG0780040831.01 | 0.808090 | 3.674508e-50 | 2.081851e-47 |
MsG0580024087.01 | MsG0780040831.01 | 0.802910 | 4.484055e-49 | 2.223100e-46 |
MsG0580025431.01 | MsG0780040831.01 | 0.811082 | 8.362252e-51 | 5.127985e-48 |
MsG0580025432.01 | MsG0780040831.01 | 0.810589 | 1.069372e-50 | 6.471994e-48 |
MsG0380015660.01 | MsG0780040831.01 | 0.830328 | 3.124504e-55 | 3.281412e-52 |
MsG0380015711.01 | MsG0780040831.01 | 0.808020 | 3.802783e-50 | 2.150486e-47 |
MsG0380016299.01 | MsG0780040831.01 | 0.815217 | 1.034995e-51 | 7.092137e-49 |
MsG0380016300.01 | MsG0780040831.01 | 0.804618 | 1.980978e-49 | 1.026141e-46 |
MsG0380016485.01 | MsG0780040831.01 | 0.820168 | 7.908075e-53 | 6.210961e-50 |
MsG0580029676.01 | MsG0780040831.01 | 0.824451 | 8.012826e-54 | 7.099694e-51 |
MsG0280007937.01 | MsG0780040831.01 | 0.829421 | 5.197782e-55 | 5.317227e-52 |
MsG0280009232.01 | MsG0780040831.01 | 0.811812 | 5.805635e-51 | 3.629386e-48 |
MsG0280009657.01 | MsG0780040831.01 | 0.808759 | 2.644270e-50 | 1.524641e-47 |
MsG0780036839.01 | MsG0780040831.01 | 0.823639 | 1.243021e-53 | 1.076430e-50 |
MsG0780038519.01 | MsG0780040831.01 | 0.806908 | 6.545295e-50 | 3.595753e-47 |
MsG0780039979.01 | MsG0780040831.01 | 0.803306 | 3.712011e-49 | 1.859011e-46 |
PPI
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040831.01.T01 | MTR_7g099330 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
MsG0780040831.01.T01 | MTR_1g069275 | 78.436 | 422 | 84 | 4 | 1 | 416 | 1 | 421 | 0.0 | 687 |
MsG0780040831.01.T01 | MTR_7g099160 | 97.231 | 325 | 9 | 0 | 92 | 416 | 213 | 537 | 0.0 | 657 |
MsG0780040831.01.T01 | MTR_1g046230 | 72.642 | 424 | 107 | 2 | 1 | 416 | 1 | 423 | 0.0 | 637 |
MsG0780040831.01.T01 | MTR_1g011630 | 58.268 | 381 | 156 | 2 | 17 | 395 | 9 | 388 | 5.30e-176 | 497 |
MsG0780040831.01.T01 | MTR_1g008380 | 58.974 | 390 | 153 | 3 | 17 | 400 | 35 | 423 | 1.28e-173 | 492 |
MsG0780040831.01.T01 | MTR_3g109520 | 59.536 | 388 | 149 | 3 | 19 | 399 | 34 | 420 | 9.54e-171 | 484 |
MsG0780040831.01.T01 | MTR_6g086870 | 56.391 | 399 | 160 | 5 | 9 | 395 | 4 | 400 | 1.79e-167 | 476 |
MsG0780040831.01.T01 | MTR_7g107710 | 45.953 | 383 | 195 | 4 | 25 | 400 | 7 | 384 | 7.75e-120 | 353 |
MsG0780040831.01.T01 | MTR_7g107690 | 42.480 | 379 | 206 | 4 | 25 | 396 | 9 | 382 | 3.77e-114 | 339 |
MsG0780040831.01.T01 | MTR_5g033260 | 45.093 | 377 | 195 | 4 | 25 | 394 | 7 | 378 | 1.10e-113 | 338 |
MsG0780040831.01.T01 | MTR_8g432640 | 45.067 | 375 | 194 | 3 | 25 | 392 | 7 | 376 | 1.98e-112 | 335 |
MsG0780040831.01.T01 | MTR_3g088955 | 43.850 | 374 | 196 | 4 | 25 | 390 | 8 | 375 | 2.98e-112 | 335 |
MsG0780040831.01.T01 | MTR_3g088925 | 43.432 | 373 | 199 | 3 | 25 | 390 | 8 | 375 | 1.38e-111 | 333 |
MsG0780040831.01.T01 | MTR_3g088945 | 43.164 | 373 | 200 | 3 | 25 | 390 | 8 | 375 | 5.92e-111 | 331 |
MsG0780040831.01.T01 | MTR_4g051642 | 43.968 | 373 | 196 | 5 | 25 | 390 | 8 | 374 | 9.54e-109 | 326 |
MsG0780040831.01.T01 | MTR_3g096030 | 38.068 | 176 | 79 | 2 | 25 | 194 | 7 | 158 | 6.38e-36 | 129 |
MsG0780040831.01.T01 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 2.07e-11 | 65.5 |
MsG0780040831.01.T01 | MTR_3g437580 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 3.30e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0780040831.01.T01 | AT4G28720 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
MsG0780040831.01.T01 | AT5G43890 | 72.813 | 423 | 105 | 4 | 1 | 414 | 1 | 422 | 0.0 | 644 |
MsG0780040831.01.T01 | AT1G04180 | 72.381 | 420 | 109 | 4 | 1 | 414 | 1 | 419 | 0.0 | 637 |
MsG0780040831.01.T01 | AT1G04610 | 68.019 | 419 | 124 | 2 | 7 | 416 | 20 | 437 | 0.0 | 603 |
MsG0780040831.01.T01 | AT2G33230 | 66.667 | 423 | 130 | 3 | 3 | 416 | 11 | 431 | 0.0 | 569 |
MsG0780040831.01.T01 | AT5G25620 | 60.199 | 402 | 151 | 5 | 9 | 402 | 16 | 416 | 5.61e-178 | 503 |
MsG0780040831.01.T01 | AT5G25620 | 60.150 | 399 | 150 | 5 | 9 | 399 | 16 | 413 | 6.25e-177 | 501 |
MsG0780040831.01.T01 | AT5G11320 | 58.438 | 397 | 159 | 2 | 19 | 415 | 12 | 402 | 4.97e-173 | 490 |
MsG0780040831.01.T01 | AT4G32540 | 56.589 | 387 | 165 | 3 | 15 | 399 | 12 | 397 | 1.37e-167 | 476 |
MsG0780040831.01.T01 | AT4G32540 | 56.041 | 389 | 166 | 4 | 15 | 399 | 12 | 399 | 7.72e-166 | 472 |
MsG0780040831.01.T01 | AT4G13260 | 57.218 | 381 | 155 | 3 | 17 | 390 | 21 | 400 | 3.56e-162 | 462 |
MsG0780040831.01.T01 | AT5G11320 | 59.752 | 323 | 129 | 1 | 19 | 341 | 12 | 333 | 1.68e-144 | 416 |
MsG0780040831.01.T01 | AT4G13260 | 56.897 | 290 | 119 | 1 | 17 | 300 | 21 | 310 | 4.49e-125 | 364 |
MsG0780040831.01.T01 | AT1G48910 | 45.308 | 373 | 192 | 4 | 25 | 390 | 6 | 373 | 4.06e-119 | 352 |
MsG0780040831.01.T01 | AT1G21430 | 47.467 | 375 | 180 | 7 | 25 | 390 | 10 | 376 | 4.90e-117 | 347 |
MsG0780040831.01.T01 | AT4G13260 | 56.207 | 290 | 119 | 3 | 108 | 390 | 9 | 297 | 4.14e-110 | 326 |
MsG0780040831.01.T01 | AT1G65860 | 26.201 | 229 | 129 | 7 | 26 | 222 | 15 | 235 | 5.89e-15 | 77.0 |
MsG0780040831.01.T01 | AT5G07800 | 25.346 | 217 | 122 | 5 | 26 | 202 | 18 | 234 | 8.82e-13 | 70.1 |
MsG0780040831.01.T01 | AT5G45180 | 25.501 | 349 | 197 | 12 | 25 | 332 | 14 | 340 | 5.90e-12 | 67.8 |
Find 94 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAGAAAGTCCTTCAATTTC+AGG | 0.167964 | 7:-83111231 | None:intergenic |
TTCTCTCACGCCGTTGCATT+TGG | 0.196198 | 7:+83110800 | MsG0780040831.01.T01:CDS |
GTTAAAATTGCACAAGATAT+TGG | 0.210104 | 7:+83112287 | MsG0780040831.01.T01:CDS |
TGTTTCTTTGAAGGGTATTC+AGG | 0.234534 | 7:-83111027 | None:intergenic |
CCATGTGGAAATGGCATCTT+TGG | 0.241543 | 7:-83112191 | None:intergenic |
TTCACAAAGAGAGGGCTTTC+TGG | 0.253444 | 7:+83112248 | MsG0780040831.01.T01:CDS |
CAATGTCCCTTCTTGGCTTC+AGG | 0.262510 | 7:+83111874 | MsG0780040831.01.T01:CDS |
CACAAGATATTGGAAAAGTT+TGG | 0.264533 | 7:+83112297 | MsG0780040831.01.T01:CDS |
GTTGTTGGATGTGGAAATTC+TGG | 0.276886 | 7:+83111324 | MsG0780040831.01.T01:CDS |
ACCGCAGCAATGTCCCTTCT+TGG | 0.278978 | 7:+83111867 | MsG0780040831.01.T01:CDS |
GTGCTACCTAGAGAAATATT+TGG | 0.304479 | 7:+83111527 | MsG0780040831.01.T01:CDS |
GGTAGTTGACAGAATTGTTT+TGG | 0.312145 | 7:-83110979 | None:intergenic |
TCTCTCACGCCGTTGCATTT+GGG | 0.312281 | 7:+83110801 | MsG0780040831.01.T01:CDS |
AGAAGGAAAGACACCGGTTT+TGG | 0.315038 | 7:+83111706 | MsG0780040831.01.T01:CDS |
GGTGAAGTTGAGCTTGTTAA+TGG | 0.336155 | 7:+83111803 | MsG0780040831.01.T01:CDS |
CGCCGTTGCATTTGGGTCAA+TGG | 0.349348 | 7:+83110808 | MsG0780040831.01.T01:CDS |
CCCTTCCAACCATGTGGAAA+TGG | 0.354454 | 7:-83112200 | None:intergenic |
GAACACACTCGTTGAATTGC+GGG | 0.355699 | 7:-83111095 | None:intergenic |
CATGGTTGGAAGGGAAATTC+AGG | 0.364067 | 7:+83112209 | MsG0780040831.01.T01:CDS |
TATGCTTGTGATTACAAGTC+AGG | 0.381966 | 7:+83111273 | MsG0780040831.01.T01:CDS |
GGAAAGAAAGTTCTTGTTGT+TGG | 0.397099 | 7:+83111309 | MsG0780040831.01.T01:CDS |
GGGTATTCAGGGAAATCTTC+AGG | 0.406351 | 7:-83111015 | None:intergenic |
CTTATGAATTGTTTCTTTGA+AGG | 0.406911 | 7:-83111036 | None:intergenic |
TCTTCAGGCATTGGAAGGTT+AGG | 0.415876 | 7:-83111000 | None:intergenic |
TCATCATGCTTTACCTTCCA+TGG | 0.420618 | 7:+83111374 | MsG0780040831.01.T01:CDS |
TGGTATCAAAAGGCCTTCAA+TGG | 0.420704 | 7:+83111661 | MsG0780040831.01.T01:CDS |
AAAGTTCTTGTTGTTGGATG+TGG | 0.420882 | 7:+83111315 | MsG0780040831.01.T01:CDS |
ATCATAGGTGCAGGTCCATC+TGG | 0.430455 | 7:+83110838 | MsG0780040831.01.T01:CDS |
AGGGACATTGCTGCGGTAAC+CGG | 0.431024 | 7:-83111861 | None:intergenic |
ATCAAAAGGTTTAATAATCA+TGG | 0.435107 | 7:+83111782 | MsG0780040831.01.T01:CDS |
TTCCATGGTTGTTCGTAGCT+CGG | 0.440887 | 7:+83111389 | MsG0780040831.01.T01:CDS |
ATGAAGTTGAGTACATTTGT+AGG | 0.449172 | 7:+83111166 | MsG0780040831.01.T01:CDS |
AACTTCAAAGGACCCATTGA+AGG | 0.449923 | 7:-83111674 | None:intergenic |
TTATGAATTGTTTCTTTGAA+GGG | 0.463097 | 7:-83111035 | None:intergenic |
CTGATTGCATAGCATCACTA+TGG | 0.465618 | 7:+83110920 | MsG0780040831.01.T01:CDS |
GTTTCTTTGAAGGGTATTCA+GGG | 0.466361 | 7:-83111026 | None:intergenic |
TCAGGGAAATCTTCAGGCAT+TGG | 0.472081 | 7:-83111009 | None:intergenic |
TGTTGAAGTGGTTACCACTT+TGG | 0.479523 | 7:+83111579 | MsG0780040831.01.T01:CDS |
GATATTCCAAATATTTCTCT+AGG | 0.498261 | 7:-83111533 | None:intergenic |
TCTGTGTTCTTCAACTTCAA+AGG | 0.498901 | 7:-83111686 | None:intergenic |
AGGTGGCTTGTTGTTGCTAC+CGG | 0.499132 | 7:+83111186 | MsG0780040831.01.T01:CDS |
GAAGGACTTTCTGAATTCAA+AGG | 0.499261 | 7:+83111240 | MsG0780040831.01.T01:CDS |
GCCATTTCCACATGGTTGGA+AGG | 0.503171 | 7:+83112199 | MsG0780040831.01.T01:CDS |
AGATGCCATTTCCACATGGT+TGG | 0.512278 | 7:+83112195 | MsG0780040831.01.T01:CDS |
GATGCAGTTGTTCTTGCTAC+CGG | 0.513400 | 7:+83111842 | MsG0780040831.01.T01:CDS |
AAAGCACCAATGTCCAAAAC+CGG | 0.515634 | 7:-83111719 | None:intergenic |
GTCAATGGACCTGTGATCAT+AGG | 0.520464 | 7:+83110823 | MsG0780040831.01.T01:CDS |
CTTAACCCTCCACAATCCAC+TGG | 0.522153 | 7:-83111139 | None:intergenic |
CATGTGGAAATGGCATCTTT+GGG | 0.531409 | 7:-83112190 | None:intergenic |
AATTCAGGACTATATGCTGT+AGG | 0.534469 | 7:+83112224 | MsG0780040831.01.T01:CDS |
ATGCTTGTGATTACAAGTCA+GGG | 0.545079 | 7:+83111274 | MsG0780040831.01.T01:CDS |
TGTGTTACTCCTGAAATTGA+AGG | 0.546438 | 7:+83111222 | MsG0780040831.01.T01:CDS |
GGTATCAAAAGGCCTTCAAT+GGG | 0.549973 | 7:+83111662 | MsG0780040831.01.T01:CDS |
AGGTACAACATTTATGTCAC+CGG | 0.553155 | 7:-83111756 | None:intergenic |
CCATTTCCACATGGTTGGAA+GGG | 0.558378 | 7:+83112200 | MsG0780040831.01.T01:CDS |
ATATTCACCTGAAGCCAAGA+AGG | 0.558667 | 7:-83111881 | None:intergenic |
TGAACACACTCGTTGAATTG+CGG | 0.561991 | 7:-83111096 | None:intergenic |
GGAAATCTTCAGGCATTGGA+AGG | 0.566772 | 7:-83111005 | None:intergenic |
ATGTTGTACCTGGAATCAAA+AGG | 0.567602 | 7:+83111768 | MsG0780040831.01.T01:CDS |
GGACCTGTGATCATAGGTGC+AGG | 0.569251 | 7:+83110829 | MsG0780040831.01.T01:CDS |
TAGCGGTTATGATGTTGAAG+TGG | 0.573120 | 7:+83111567 | MsG0780040831.01.T01:CDS |
GCTTTGGAGAAAATTAGATC+CGG | 0.578995 | 7:+83111737 | MsG0780040831.01.T01:CDS |
GCTGTAGGGTTCACAAAGAG+AGG | 0.580060 | 7:+83112239 | MsG0780040831.01.T01:CDS |
GCTGCCGTTGCAAGACCAGA+TGG | 0.585259 | 7:-83110853 | None:intergenic |
GTGAAGTTTCAATCTGTCGT+AGG | 0.589564 | 7:-83110953 | None:intergenic |
ATTCAGGACTATATGCTGTA+GGG | 0.590290 | 7:+83112225 | MsG0780040831.01.T01:CDS |
TTGAAGTTGAAGAACACAGA+AGG | 0.590910 | 7:+83111689 | MsG0780040831.01.T01:CDS |
CCAAAGATGCCATTTCCACA+TGG | 0.597297 | 7:+83112191 | MsG0780040831.01.T01:CDS |
GCAGCATGTCTTAGAGAACA+AGG | 0.601445 | 7:+83110871 | MsG0780040831.01.T01:CDS |
TGGATGTGGAAATTCTGGAA+TGG | 0.605555 | 7:+83111329 | MsG0780040831.01.T01:CDS |
AAGTTGAGTACATTTGTAGG+TGG | 0.605781 | 7:+83111169 | MsG0780040831.01.T01:CDS |
GGTGACATAAATGTTGTACC+TGG | 0.608839 | 7:+83111758 | MsG0780040831.01.T01:CDS |
TATTCACCTGAAGCCAAGAA+GGG | 0.613263 | 7:-83111880 | None:intergenic |
CTGTAGGGTTCACAAAGAGA+GGG | 0.613353 | 7:+83112240 | MsG0780040831.01.T01:CDS |
ATGATGAAACCAGTGGATTG+TGG | 0.614186 | 7:+83111130 | MsG0780040831.01.T01:CDS |
GGACCTGCACCTATGATCAC+AGG | 0.615165 | 7:-83110832 | None:intergenic |
GTCCATTGACCCAAATGCAA+CGG | 0.615198 | 7:-83110810 | None:intergenic |
GTGGTTACCACTTTGGATTG+TGG | 0.615333 | 7:+83111586 | MsG0780040831.01.T01:CDS |
AGCTCTTTCGAGAACAACGA+AGG | 0.625793 | 7:-83110899 | None:intergenic |
AGGTCCATCTGGTCTTGCAA+CGG | 0.627266 | 7:+83110849 | MsG0780040831.01.T01:CDS |
GAATTTCCCTTCCAACCATG+TGG | 0.635313 | 7:-83112206 | None:intergenic |
GAGCTACGAACAACCATGGA+AGG | 0.637115 | 7:-83111387 | None:intergenic |
GCAACGTCTATGACAAGCAG+TGG | 0.639607 | 7:-83112351 | None:intergenic |
AGCTTGTCCACAATCCAAAG+TGG | 0.643807 | 7:-83111593 | None:intergenic |
TACCGAGCTACGAACAACCA+TGG | 0.644442 | 7:-83111391 | None:intergenic |
CAGCATGTCTTAGAGAACAA+GGG | 0.645300 | 7:+83110872 | MsG0780040831.01.T01:CDS |
AGCATGTCTTAGAGAACAAG+GGG | 0.647019 | 7:+83110873 | MsG0780040831.01.T01:CDS |
GCTAAGTATGATGAAACCAG+TGG | 0.647995 | 7:+83111123 | MsG0780040831.01.T01:CDS |
AACGGCGTGAGAGAAAGTCT+TGG | 0.654245 | 7:-83110792 | None:intergenic |
GCCAAGAAGGGACATTGCTG+CGG | 0.662896 | 7:-83111868 | None:intergenic |
GCTCTTTCGAGAACAACGAA+GGG | 0.679788 | 7:-83110898 | None:intergenic |
ATGAAACCAGTGGATTGTGG+AGG | 0.691994 | 7:+83111133 | MsG0780040831.01.T01:CDS |
GAACACAGAAGGAAAGACAC+CGG | 0.709214 | 7:+83111700 | MsG0780040831.01.T01:CDS |
TGAAACCAGTGGATTGTGGA+GGG | 0.710675 | 7:+83111134 | MsG0780040831.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCAAGTAACTAATTAATTT+TGG | + | Chr7:83112125-83112144 | MsG0780040831.01.T01:intron | 15.0% |
!!! | CATAGTAAATTTTTTAACTT+AGG | + | Chr7:83111455-83111474 | MsG0780040831.01.T01:intron | 15.0% |
!! | ATCAAAAGGTTTAATAATCA+TGG | + | Chr7:83111782-83111801 | MsG0780040831.01.T01:CDS | 20.0% |
!!! | AATATCAACTTTTGAATTAG+CGG | + | Chr7:83111550-83111569 | MsG0780040831.01.T01:CDS | 20.0% |
!!! | TAATTTTGGTTATGTTATAC+AGG | + | Chr7:83112139-83112158 | MsG0780040831.01.T01:intron | 20.0% |
!!! | TTATGAATTGTTTCTTTGAA+GGG | - | Chr7:83111038-83111057 | None:intergenic | 20.0% |
! | AGGATGAAAAAAATCTAACT+GGG | + | Chr7:83111475-83111494 | MsG0780040831.01.T01:intron | 25.0% |
! | GATATTCCAAATATTTCTCT+AGG | - | Chr7:83111536-83111555 | None:intergenic | 25.0% |
! | GTTAAAATTGCACAAGATAT+TGG | + | Chr7:83112287-83112306 | MsG0780040831.01.T01:CDS | 25.0% |
! | TAGGATGAAAAAAATCTAAC+TGG | + | Chr7:83111474-83111493 | MsG0780040831.01.T01:intron | 25.0% |
! | TGGAAAAATATGGTATCAAA+AGG | + | Chr7:83111651-83111670 | MsG0780040831.01.T01:CDS | 25.0% |
!! | CTTATGAATTGTTTCTTTGA+AGG | - | Chr7:83111039-83111058 | None:intergenic | 25.0% |
!!! | ATTTGTTAGCATAGTTTTCA+AGG | - | Chr7:83111065-83111084 | None:intergenic | 25.0% |
!!! | ATTTTGACATGGTTCATTTT+GGG | + | Chr7:83111623-83111642 | MsG0780040831.01.T01:CDS | 25.0% |
!!! | TGTTCTGTTTTTTTTACTAC+AGG | + | Chr7:83111499-83111518 | MsG0780040831.01.T01:intron | 25.0% |
!!! | TTATTAAACCTTTTGATTCC+AGG | - | Chr7:83111779-83111798 | None:intergenic | 25.0% |
ATGAAGTTGAGTACATTTGT+AGG | + | Chr7:83111166-83111185 | MsG0780040831.01.T01:CDS | 30.0% | |
ATTAATACTGACACAGATAC+CGG | - | Chr7:83111433-83111452 | None:intergenic | 30.0% | |
CACAAGATATTGGAAAAGTT+TGG | + | Chr7:83112297-83112316 | MsG0780040831.01.T01:CDS | 30.0% | |
TTTGGTTATGTTATACAGGA+AGG | + | Chr7:83112143-83112162 | MsG0780040831.01.T01:intron | 30.0% | |
! | AAGTCAGGGAAAAATTTTGA+AGG | + | Chr7:83111288-83111307 | MsG0780040831.01.T01:CDS | 30.0% |
! | GGTGAATTTTTCTCCAAAAA+TGG | + | Chr7:83112164-83112183 | MsG0780040831.01.T01:CDS | 30.0% |
!! | GATTTTGACATGGTTCATTT+TGG | + | Chr7:83111622-83111641 | MsG0780040831.01.T01:CDS | 30.0% |
!!! | AGCTTTTGTTGATTTTGACA+TGG | + | Chr7:83111612-83111631 | MsG0780040831.01.T01:CDS | 30.0% |
AAGTTGAGTACATTTGTAGG+TGG | + | Chr7:83111169-83111188 | MsG0780040831.01.T01:CDS | 35.0% | |
AATTCAGGACTATATGCTGT+AGG | + | Chr7:83112224-83112243 | MsG0780040831.01.T01:CDS | 35.0% | |
AGGTACAACATTTATGTCAC+CGG | - | Chr7:83111759-83111778 | None:intergenic | 35.0% | |
ATGCTTGTGATTACAAGTCA+GGG | + | Chr7:83111274-83111293 | MsG0780040831.01.T01:CDS | 35.0% | |
ATGTTGTACCTGGAATCAAA+AGG | + | Chr7:83111768-83111787 | MsG0780040831.01.T01:CDS | 35.0% | |
ATTCAGGACTATATGCTGTA+GGG | + | Chr7:83112225-83112244 | MsG0780040831.01.T01:CDS | 35.0% | |
GAAGGACTTTCTGAATTCAA+AGG | + | Chr7:83111240-83111259 | MsG0780040831.01.T01:CDS | 35.0% | |
GTGCTACCTAGAGAAATATT+TGG | + | Chr7:83111527-83111546 | MsG0780040831.01.T01:CDS | 35.0% | |
TATGCTTGTGATTACAAGTC+AGG | + | Chr7:83111273-83111292 | MsG0780040831.01.T01:CDS | 35.0% | |
TCAGAAAGTCCTTCAATTTC+AGG | - | Chr7:83111234-83111253 | None:intergenic | 35.0% | |
TCTGGCTAAATCTTAGTTGT+TGG | + | Chr7:83111961-83111980 | MsG0780040831.01.T01:intron | 35.0% | |
TCTGTGTTCTTCAACTTCAA+AGG | - | Chr7:83111689-83111708 | None:intergenic | 35.0% | |
TTGAAGTTGAAGAACACAGA+AGG | + | Chr7:83111689-83111708 | MsG0780040831.01.T01:CDS | 35.0% | |
TTGGGTGACATGGAAAAATA+TGG | + | Chr7:83111641-83111660 | MsG0780040831.01.T01:CDS | 35.0% | |
! | ACATGTCTTTTTCTATCCTC+CGG | - | Chr7:83112036-83112055 | None:intergenic | 35.0% |
! | CATCTTTGGGTATCCATTTT+TGG | - | Chr7:83112180-83112199 | None:intergenic | 35.0% |
! | GGAAAGAAAGTTCTTGTTGT+TGG | + | Chr7:83111309-83111328 | MsG0780040831.01.T01:CDS | 35.0% |
! | GGTAGTTGACAGAATTGTTT+TGG | - | Chr7:83110982-83111001 | None:intergenic | 35.0% |
! | TCCGACAACAAAGATTTTAC+CGG | + | Chr7:83112014-83112033 | MsG0780040831.01.T01:intron | 35.0% |
! | TCCGGTAAAATCTTTGTTGT+CGG | - | Chr7:83112018-83112037 | None:intergenic | 35.0% |
! | TGTGTTACTCCTGAAATTGA+AGG | + | Chr7:83111222-83111241 | MsG0780040831.01.T01:CDS | 35.0% |
!! | AAAGTTCTTGTTGTTGGATG+TGG | + | Chr7:83111315-83111334 | MsG0780040831.01.T01:CDS | 35.0% |
!! | GCTTTGGAGAAAATTAGATC+CGG | + | Chr7:83111737-83111756 | MsG0780040831.01.T01:CDS | 35.0% |
!! | GTTTCTTTGAAGGGTATTCA+GGG | - | Chr7:83111029-83111048 | None:intergenic | 35.0% |
!! | TGTTTCTTTGAAGGGTATTC+AGG | - | Chr7:83111030-83111049 | None:intergenic | 35.0% |
!!! | GTAAGTTCTTTTTCAGTGTC+CGG | + | Chr7:83111411-83111430 | MsG0780040831.01.T01:intron | 35.0% |
!!! | GTTGACAGAATTGTTTTGGA+AGG | - | Chr7:83110978-83110997 | None:intergenic | 35.0% |
AACTTCAAAGGACCCATTGA+AGG | - | Chr7:83111677-83111696 | None:intergenic | 40.0% | |
AGCATGTCTTAGAGAACAAG+GGG | + | Chr7:83110873-83110892 | MsG0780040831.01.T01:CDS | 40.0% | |
ATATTCACCTGAAGCCAAGA+AGG | - | Chr7:83111884-83111903 | None:intergenic | 40.0% | |
CAACTAAGATTTAGCCAGAG+CGG | - | Chr7:83111960-83111979 | None:intergenic | 40.0% | |
CAGCATGTCTTAGAGAACAA+GGG | + | Chr7:83110872-83110891 | MsG0780040831.01.T01:CDS | 40.0% | |
CATGTGGAAATGGCATCTTT+GGG | - | Chr7:83112193-83112212 | None:intergenic | 40.0% | |
CTGATTGCATAGCATCACTA+TGG | + | Chr7:83110920-83110939 | MsG0780040831.01.T01:CDS | 40.0% | |
GCTAAGTATGATGAAACCAG+TGG | + | Chr7:83111123-83111142 | MsG0780040831.01.T01:CDS | 40.0% | |
GGTATCAAAAGGCCTTCAAT+GGG | + | Chr7:83111662-83111681 | MsG0780040831.01.T01:CDS | 40.0% | |
GGTGACATAAATGTTGTACC+TGG | + | Chr7:83111758-83111777 | MsG0780040831.01.T01:CDS | 40.0% | |
GTGAAGTTTCAATCTGTCGT+AGG | - | Chr7:83110956-83110975 | None:intergenic | 40.0% | |
GTTGTTGGATGTGGAAATTC+TGG | + | Chr7:83111324-83111343 | MsG0780040831.01.T01:CDS | 40.0% | |
TAGCGGTTATGATGTTGAAG+TGG | + | Chr7:83111567-83111586 | MsG0780040831.01.T01:CDS | 40.0% | |
TATTCACCTGAAGCCAAGAA+GGG | - | Chr7:83111883-83111902 | None:intergenic | 40.0% | |
TCATCATGCTTTACCTTCCA+TGG | + | Chr7:83111374-83111393 | MsG0780040831.01.T01:CDS | 40.0% | |
TGAACACACTCGTTGAATTG+CGG | - | Chr7:83111099-83111118 | None:intergenic | 40.0% | |
TGGTATCAAAAGGCCTTCAA+TGG | + | Chr7:83111661-83111680 | MsG0780040831.01.T01:CDS | 40.0% | |
TGTTGAAGTGGTTACCACTT+TGG | + | Chr7:83111579-83111598 | MsG0780040831.01.T01:CDS | 40.0% | |
! | AAAGCACCAATGTCCAAAAC+CGG | - | Chr7:83111722-83111741 | None:intergenic | 40.0% |
! | AGTTGACTTAGATCCTCTTC+TGG | + | Chr7:83111934-83111953 | MsG0780040831.01.T01:intron | 40.0% |
! | GACAACAAAGATTTTACCGG+AGG | + | Chr7:83112017-83112036 | MsG0780040831.01.T01:intron | 40.0% |
! | TGGATGTGGAAATTCTGGAA+TGG | + | Chr7:83111329-83111348 | MsG0780040831.01.T01:CDS | 40.0% |
!! | ATGATGAAACCAGTGGATTG+TGG | + | Chr7:83111130-83111149 | MsG0780040831.01.T01:CDS | 40.0% |
!! | ATGGTTCATTTTGGGTGACA+TGG | + | Chr7:83111631-83111650 | MsG0780040831.01.T01:CDS | 40.0% |
!! | GGTGAAGTTGAGCTTGTTAA+TGG | + | Chr7:83111803-83111822 | MsG0780040831.01.T01:CDS | 40.0% |
AGCTCTTTCGAGAACAACGA+AGG | - | Chr7:83110902-83110921 | None:intergenic | 45.0% | |
AGCTTGTCCACAATCCAAAG+TGG | - | Chr7:83111596-83111615 | None:intergenic | 45.0% | |
CATGGTTGGAAGGGAAATTC+AGG | + | Chr7:83112209-83112228 | MsG0780040831.01.T01:CDS | 45.0% | |
CCATGTGGAAATGGCATCTT+TGG | - | Chr7:83112194-83112213 | None:intergenic | 45.0% | |
CCATTTCCACATGGTTGGAA+GGG | + | Chr7:83112200-83112219 | MsG0780040831.01.T01:CDS | 45.0% | |
CTGTAGGGTTCACAAAGAGA+GGG | + | Chr7:83112240-83112259 | MsG0780040831.01.T01:CDS | 45.0% | |
GAACACACTCGTTGAATTGC+GGG | - | Chr7:83111098-83111117 | None:intergenic | 45.0% | |
GAACACAGAAGGAAAGACAC+CGG | + | Chr7:83111700-83111719 | MsG0780040831.01.T01:CDS | 45.0% | |
GAATTTCCCTTCCAACCATG+TGG | - | Chr7:83112209-83112228 | None:intergenic | 45.0% | |
GATGCAGTTGTTCTTGCTAC+CGG | + | Chr7:83111842-83111861 | MsG0780040831.01.T01:CDS | 45.0% | |
GCAGCATGTCTTAGAGAACA+AGG | + | Chr7:83110871-83110890 | MsG0780040831.01.T01:CDS | 45.0% | |
GCTCTTTCGAGAACAACGAA+GGG | - | Chr7:83110901-83110920 | None:intergenic | 45.0% | |
GGGTATTCAGGGAAATCTTC+AGG | - | Chr7:83111018-83111037 | None:intergenic | 45.0% | |
GTCAATGGACCTGTGATCAT+AGG | + | Chr7:83110823-83110842 | MsG0780040831.01.T01:CDS | 45.0% | |
GTCCATTGACCCAAATGCAA+CGG | - | Chr7:83110813-83110832 | None:intergenic | 45.0% | |
GTGGTTACCACTTTGGATTG+TGG | + | Chr7:83111586-83111605 | MsG0780040831.01.T01:CDS | 45.0% | |
TCAGGGAAATCTTCAGGCAT+TGG | - | Chr7:83111012-83111031 | None:intergenic | 45.0% | |
TTCACAAAGAGAGGGCTTTC+TGG | + | Chr7:83112248-83112267 | MsG0780040831.01.T01:CDS | 45.0% | |
TTCCATGGTTGTTCGTAGCT+CGG | + | Chr7:83111389-83111408 | MsG0780040831.01.T01:CDS | 45.0% | |
! | AACACACTCAGCATTTTCGC+CGG | - | Chr7:83111208-83111227 | None:intergenic | 45.0% |
! | AGATGCCATTTCCACATGGT+TGG | + | Chr7:83112195-83112214 | MsG0780040831.01.T01:CDS | 45.0% |
! | CCAAAGATGCCATTTCCACA+TGG | + | Chr7:83112191-83112210 | MsG0780040831.01.T01:CDS | 45.0% |
!! | ATGAAACCAGTGGATTGTGG+AGG | + | Chr7:83111133-83111152 | MsG0780040831.01.T01:CDS | 45.0% |
!! | GGAAATCTTCAGGCATTGGA+AGG | - | Chr7:83111008-83111027 | None:intergenic | 45.0% |
!! | TCTTCAGGCATTGGAAGGTT+AGG | - | Chr7:83111003-83111022 | None:intergenic | 45.0% |
!! | TGAAACCAGTGGATTGTGGA+GGG | + | Chr7:83111134-83111153 | MsG0780040831.01.T01:CDS | 45.0% |
!!! | AAGACACCGGTTTTGGACAT+TGG | + | Chr7:83111713-83111732 | MsG0780040831.01.T01:CDS | 45.0% |
!!! | AGAAGGAAAGACACCGGTTT+TGG | + | Chr7:83111706-83111725 | MsG0780040831.01.T01:CDS | 45.0% |
!!! | GGTTTTGGACATTGGTGCTT+TGG | + | Chr7:83111721-83111740 | MsG0780040831.01.T01:CDS | 45.0% |
AACGGCGTGAGAGAAAGTCT+TGG | - | Chr7:83110795-83110814 | None:intergenic | 50.0% | |
ATCATAGGTGCAGGTCCATC+TGG | + | Chr7:83110838-83110857 | MsG0780040831.01.T01:CDS | 50.0% | |
CAATGTCCCTTCTTGGCTTC+AGG | + | Chr7:83111874-83111893 | MsG0780040831.01.T01:CDS | 50.0% | |
CCCTTCCAACCATGTGGAAA+TGG | - | Chr7:83112203-83112222 | None:intergenic | 50.0% | |
CTTAACCCTCCACAATCCAC+TGG | - | Chr7:83111142-83111161 | None:intergenic | 50.0% | |
GAGCTACGAACAACCATGGA+AGG | - | Chr7:83111390-83111409 | None:intergenic | 50.0% | |
GCAACGTCTATGACAAGCAG+TGG | - | Chr7:83112354-83112373 | None:intergenic | 50.0% | |
GCCATTTCCACATGGTTGGA+AGG | + | Chr7:83112199-83112218 | MsG0780040831.01.T01:CDS | 50.0% | |
GCTGTAGGGTTCACAAAGAG+AGG | + | Chr7:83112239-83112258 | MsG0780040831.01.T01:CDS | 50.0% | |
TACCGAGCTACGAACAACCA+TGG | - | Chr7:83111394-83111413 | None:intergenic | 50.0% | |
TCTCTCACGCCGTTGCATTT+GGG | + | Chr7:83110801-83110820 | MsG0780040831.01.T01:CDS | 50.0% | |
TTCTCTCACGCCGTTGCATT+TGG | + | Chr7:83110800-83110819 | MsG0780040831.01.T01:CDS | 50.0% | |
!! | AGGTCCATCTGGTCTTGCAA+CGG | + | Chr7:83110849-83110868 | MsG0780040831.01.T01:CDS | 50.0% |
!! | AGGTGGCTTGTTGTTGCTAC+CGG | + | Chr7:83111186-83111205 | MsG0780040831.01.T01:CDS | 50.0% |
ACCGCAGCAATGTCCCTTCT+TGG | + | Chr7:83111867-83111886 | MsG0780040831.01.T01:CDS | 55.0% | |
AGGGACATTGCTGCGGTAAC+CGG | - | Chr7:83111864-83111883 | None:intergenic | 55.0% | |
CGCCGTTGCATTTGGGTCAA+TGG | + | Chr7:83110808-83110827 | MsG0780040831.01.T01:CDS | 55.0% | |
GCCAAGAAGGGACATTGCTG+CGG | - | Chr7:83111871-83111890 | None:intergenic | 55.0% | |
GGACCTGCACCTATGATCAC+AGG | - | Chr7:83110835-83110854 | None:intergenic | 55.0% | |
GGACCTGTGATCATAGGTGC+AGG | + | Chr7:83110829-83110848 | MsG0780040831.01.T01:CDS | 55.0% | |
AGATCCTCTTCTGGCCGCTC+TGG | + | Chr7:83111943-83111962 | MsG0780040831.01.T01:intron | 60.0% | |
GCTGCCGTTGCAAGACCAGA+TGG | - | Chr7:83110856-83110875 | None:intergenic | 60.0% | |
TTAGCCAGAGCGGCCAGAAG+AGG | - | Chr7:83111950-83111969 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr7 | gene | 83110763 | 83112388 | 83110763 | ID=MsG0780040831.01;Name=MsG0780040831.01 |
Chr7 | mRNA | 83110763 | 83112388 | 83110763 | ID=MsG0780040831.01.T01;Parent=MsG0780040831.01;Name=MsG0780040831.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|416 |
Chr7 | exon | 83110763 | 83111410 | 83110763 | ID=MsG0780040831.01.T01:exon:1497;Parent=MsG0780040831.01.T01 |
Chr7 | exon | 83111521 | 83111895 | 83111521 | ID=MsG0780040831.01.T01:exon:1498;Parent=MsG0780040831.01.T01 |
Chr7 | exon | 83112161 | 83112388 | 83112161 | ID=MsG0780040831.01.T01:exon:1499;Parent=MsG0780040831.01.T01 |
Chr7 | CDS | 83110763 | 83111410 | 83110763 | ID=MsG0780040831.01.T01:cds;Parent=MsG0780040831.01.T01 |
Chr7 | CDS | 83111521 | 83111895 | 83111521 | ID=MsG0780040831.01.T01:cds;Parent=MsG0780040831.01.T01 |
Chr7 | CDS | 83112161 | 83112388 | 83112161 | ID=MsG0780040831.01.T01:cds;Parent=MsG0780040831.01.T01 |
Gene Sequence |
Protein sequence |