AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001973.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001973.01.T01 MTR_1g047210 91.828 465 6 1 3 467 30 462 0.0 854
MsG0180001973.01.T01 MTR_4g022430 72.584 445 84 2 2 446 28 434 0.0 639
MsG0180001973.01.T01 MTR_4g134090 34.527 391 231 8 25 401 14 393 1.49e-58 198
MsG0180001973.01.T01 MTR_4g134090 34.684 395 225 9 25 401 7 386 2.38e-58 197
MsG0180001973.01.T01 MTR_5g098310 34.218 377 225 7 25 387 16 383 9.47e-55 188
MsG0180001973.01.T01 MTR_0449s0040 32.362 343 209 7 25 353 16 349 3.58e-40 147
MsG0180001973.01.T01 MTR_4g134090 30.888 259 148 8 25 265 7 252 1.10e-20 92.4
MsG0180001973.01.T01 MTR_0837s0020 35.135 111 72 0 33 143 808 918 1.44e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001973.01.T01 AT2G33150 80.043 466 60 2 3 467 29 462 0.0 742
MsG0180001973.01.T01 AT1G04710 77.283 449 66 2 8 456 30 442 0.0 705
MsG0180001973.01.T01 AT5G48880 70.320 438 96 2 20 455 45 450 0.0 627
MsG0180001973.01.T01 AT5G48880 70.320 438 96 2 20 455 45 450 0.0 627
MsG0180001973.01.T01 AT5G48880 70.320 438 96 2 20 455 45 450 0.0 627
MsG0180001973.01.T01 AT5G48880 70.320 438 96 2 20 455 2 407 0.0 626
MsG0180001973.01.T01 AT5G48230 36.220 381 212 8 25 387 7 374 1.81e-60 203
MsG0180001973.01.T01 AT5G48230 36.220 381 212 8 25 387 12 379 2.59e-60 202
MsG0180001973.01.T01 AT5G47720 33.673 392 233 10 25 401 21 400 5.39e-57 194
MsG0180001973.01.T01 AT5G47720 33.673 392 233 10 25 401 14 393 6.36e-57 194
MsG0180001973.01.T01 AT5G47720 33.673 392 233 10 25 401 14 393 6.36e-57 194
MsG0180001973.01.T01 AT5G47720 33.673 392 233 10 25 401 14 393 9.29e-57 194
MsG0180001973.01.T01 AT5G47720 33.673 392 233 10 25 401 14 393 9.29e-57 194

Find 117 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTGTTTATTGTAAAT+TGG 0.170971 1:-30085521 MsG0180001973.01.T01:CDS
TGCCCATTCTTGGTGTATTC+AGG 0.198226 1:-30088044 MsG0180001973.01.T01:intron
CCATTGGAAGGAGGCAGTTT+TGG 0.225837 1:+30088694 None:intergenic
AATATTGTTTATTGTAAATT+GGG 0.316402 1:-30085520 MsG0180001973.01.T01:CDS
CTGATGTAGCTGCTGCTATA+AGG 0.320959 1:-30089051 MsG0180001973.01.T01:CDS
TTCACAGGCTTCAGCGTGTT+TGG 0.320972 1:-30089729 MsG0180001973.01.T01:intron
ATTGTTGTCGGTTCTGTATT+GGG 0.330737 1:-30089271 MsG0180001973.01.T01:CDS
AATAAACAATATTAACTATA+TGG 0.333717 1:+30085530 None:intergenic
GCAAATACCTTGGTGGAAAC+TGG 0.336550 1:+30088440 None:intergenic
GAAAAGGTTGTCCCCTTTGC+GGG 0.341498 1:+30085429 None:intergenic
GCGGCTGCTGCTACTGCTGC+TGG 0.346344 1:-30088485 MsG0180001973.01.T01:CDS
CAAAAGGGGCTGCCCATTCT+TGG 0.346574 1:-30088054 MsG0180001973.01.T01:CDS
CGTGGCAAGGACTGCCGATA+TGG 0.352522 1:-30085631 MsG0180001973.01.T01:CDS
AATGGCAATTGGGCATCCTT+TGG 0.353600 1:-30086094 MsG0180001973.01.T01:CDS
AACGGAGGTGCAATGGCAAT+TGG 0.374137 1:-30086105 MsG0180001973.01.T01:CDS
ATCACAGGACAGCTGCATTC+GGG 0.375097 1:-30089688 MsG0180001973.01.T01:CDS
GAAAATGTTGCCAATCGCTT+TGG 0.377320 1:-30088660 MsG0180001973.01.T01:CDS
TTGGGAGCAGGTACTGGAAT+GGG 0.385654 1:-30085502 MsG0180001973.01.T01:CDS
TATTGTTGTCGGTTCTGTAT+TGG 0.386914 1:-30089272 MsG0180001973.01.T01:CDS
TGTAAATTGGGAGCAGGTAC+TGG 0.387941 1:-30085508 MsG0180001973.01.T01:CDS
TTTAGGTATTGGTGCCGGTT+TGG 0.388956 1:-30088922 MsG0180001973.01.T01:intron
GTTAACAGACAATGTTCATC+TGG 0.392525 1:-30089088 MsG0180001973.01.T01:CDS
GCAACTGGAATTGCAGCAGC+TGG 0.394353 1:+30086333 None:intergenic
CTAATTCTAGCGAGCATCCT+TGG 0.404438 1:+30085402 None:intergenic
CCTGCAGCCTTCACAGCAAC+TGG 0.406034 1:+30086318 None:intergenic
GGGCATCCTTTGGGAGCAAC+AGG 0.407923 1:-30086084 MsG0180001973.01.T01:intron
ATGGCAATTGGGCATCCTTT+GGG 0.407928 1:-30086093 MsG0180001973.01.T01:CDS
CAGGCTTCAGCGTGTTTGGC+GGG 0.409994 1:-30089725 MsG0180001973.01.T01:CDS
AGAAATAAAACCTTCAAAAC+AGG 0.419403 1:+30089427 None:intergenic
GTCACCATTTCTGTTGATGA+TGG 0.425976 1:-30088311 MsG0180001973.01.T01:CDS
AAGAAGTATTGCAATGCAAA+AGG 0.426968 1:-30088070 MsG0180001973.01.T01:CDS
AGCTTTGCAACGCCCGCAAA+GGG 0.428522 1:-30085441 MsG0180001973.01.T01:CDS
GTCGGTTCTGTATTGGGAGC+TGG 0.433413 1:-30089265 MsG0180001973.01.T01:CDS
TATCACAGGACAGCTGCATT+CGG 0.434435 1:-30089689 MsG0180001973.01.T01:CDS
CCAATCGCTTTGGAGTTTCA+AGG 0.435048 1:-30088650 MsG0180001973.01.T01:CDS
CTCTGTGCGTATATGTGTAT+TGG 0.441236 1:-30085571 MsG0180001973.01.T01:CDS
AATTCCATCATCAACAGAAA+TGG 0.442594 1:+30088307 None:intergenic
CCTTGAAACTCCAAAGCGAT+TGG 0.443317 1:+30088650 None:intergenic
CCAGTTGCTGTGAAGGCTGC+AGG 0.443727 1:-30086318 MsG0180001973.01.T01:CDS
TGGTGTTGATCCTGCCATCA+TGG 0.449169 1:-30086364 MsG0180001973.01.T01:CDS
ACACAGCTTTAAGCTTTCCT+AGG 0.450078 1:+30088261 None:intergenic
TGATGTAGCTGCTGCTATAA+GGG 0.452992 1:-30089050 MsG0180001973.01.T01:CDS
CAAAACTGCCTCCTTCCAAT+GGG 0.459453 1:-30088693 MsG0180001973.01.T01:CDS
ATCCAGAGACTGTGCCGGTT+AGG 0.477289 1:-30089114 MsG0180001973.01.T01:intron
TGCCATTGGATTAGTTGTCA+TGG 0.478121 1:+30088896 None:intergenic
AACTTGAACCCAAGTGAAGT+TGG 0.479113 1:-30089298 MsG0180001973.01.T01:CDS
TGCAATTCCAGTTGCTGTGA+AGG 0.480592 1:-30086325 MsG0180001973.01.T01:CDS
ACAATATCTCCAACTTCACT+TGG 0.482345 1:+30089289 None:intergenic
AGTTGTCATGGATTCCAAAC+CGG 0.484869 1:+30088908 None:intergenic
TAGGTCAGCTAATGATGCAT+TGG 0.487397 1:+30088280 None:intergenic
TCACAAAAGATCAATGTTAA+CGG 0.488907 1:-30086123 MsG0180001973.01.T01:CDS
TGTCTGTTAACTGTCCTAAC+CGG 0.490107 1:+30089100 None:intergenic
GAAGTTGGAGATATTGTTGT+CGG 0.492011 1:-30089283 MsG0180001973.01.T01:CDS
GTTTATTGTAAATTGGGAGC+AGG 0.494316 1:-30085514 MsG0180001973.01.T01:CDS
AGAAGTATTGCAATGCAAAA+GGG 0.494786 1:-30088069 MsG0180001973.01.T01:CDS
ACAGGCTTCAGCGTGTTTGG+CGG 0.495013 1:-30089726 MsG0180001973.01.T01:intron
CCAAAACTGCCTCCTTCCAA+TGG 0.495559 1:-30088694 MsG0180001973.01.T01:CDS
ACGGAGGTGCAATGGCAATT+GGG 0.495713 1:-30086104 MsG0180001973.01.T01:CDS
ACTGATCCATCCCATGCCAT+TGG 0.498873 1:+30088882 None:intergenic
GGGCCAACACCCATGATGGC+AGG 0.504707 1:+30086354 None:intergenic
GTACCTGAATACACCAAGAA+TGG 0.508482 1:+30088041 None:intergenic
GTAGCTGCTGCTATAAGGGC+TGG 0.512492 1:-30089046 MsG0180001973.01.T01:CDS
TACCTGAATACACCAAGAAT+GGG 0.514024 1:+30088042 None:intergenic
AGGTCAGCTAATGATGCATT+GGG 0.514870 1:+30088281 None:intergenic
GAGCTTTGCAACGCCCGCAA+AGG 0.516121 1:-30085442 MsG0180001973.01.T01:CDS
ACATAGATATTACTCCATAT+CGG 0.529470 1:+30085617 None:intergenic
TGTAGGAGTTTCGTCGCAGT+TGG 0.529855 1:-30086384 MsG0180001973.01.T01:intron
GATCCTGCCATCATGGGTGT+TGG 0.532689 1:-30086357 MsG0180001973.01.T01:CDS
AATCAAGTCCTAGCTTGTTA+CGG 0.534024 1:+30086145 None:intergenic
AACTTCACTTGGGTTCAAGT+TGG 0.534134 1:+30089300 None:intergenic
GAGCATCCTTGGATAAGAAA+AGG 0.536509 1:+30085413 None:intergenic
AGCTGGGCCAACACCCATGA+TGG 0.538149 1:+30086350 None:intergenic
CAACTGGAATTGCAGCAGCT+GGG 0.538167 1:+30086334 None:intergenic
TGAAATGAAGCGACGTGGCA+AGG 0.538544 1:-30085644 MsG0180001973.01.T01:CDS
CAGAGGTAATCCCCATTGGA+AGG 0.540583 1:+30088682 None:intergenic
AGAAAAGGTTGTCCCCTTTG+CGG 0.541326 1:+30085428 None:intergenic
AAAGACGGAACCACCACTGC+TGG 0.543818 1:-30088233 MsG0180001973.01.T01:intron
GGTGTTGATCCTGCCATCAT+GGG 0.545097 1:-30086363 MsG0180001973.01.T01:CDS
GTATATTGCCGTAACAAGCT+AGG 0.554751 1:-30086153 MsG0180001973.01.T01:CDS
ATTGGGAGCAGGTACTGGAA+TGG 0.554894 1:-30085503 MsG0180001973.01.T01:CDS
CTCCAGCACCATCACTCACC+TGG 0.557295 1:+30088109 None:intergenic
AAACCTTCAAAACAGGAGCT+AGG 0.557984 1:+30089434 None:intergenic
GTTGATAGGTTGAGTCTCAC+AGG 0.558743 1:-30088511 MsG0180001973.01.T01:intron
CAATGTTAACGGAGGTGCAA+TGG 0.560069 1:-30086112 MsG0180001973.01.T01:CDS
AAAGCTGTGTTTAAGAAAGA+CGG 0.562712 1:-30088248 MsG0180001973.01.T01:CDS
TGGGAGCAGGTACTGGAATG+GGG 0.564142 1:-30085501 MsG0180001973.01.T01:CDS
TGATCTTATACCAGCAGTGG+TGG 0.567622 1:+30088223 None:intergenic
AGCCAGGTGAGTGATGGTGC+TGG 0.568071 1:-30088111 MsG0180001973.01.T01:CDS
GACAACTAATCCAATGGCAT+GGG 0.568175 1:-30088892 MsG0180001973.01.T01:CDS
GGAGTAATATCTATGTGCAT+TGG 0.569536 1:-30085610 MsG0180001973.01.T01:CDS
TGACAACTAATCCAATGGCA+TGG 0.569744 1:-30088893 MsG0180001973.01.T01:CDS
TTATGATCTTATACCAGCAG+TGG 0.573440 1:+30088220 None:intergenic
CAAATTGGCAAATACCTTGG+TGG 0.577525 1:+30088433 None:intergenic
ATCCATGACAACTAATCCAA+TGG 0.583716 1:-30088898 MsG0180001973.01.T01:CDS
GAGACAGTGCTGCTTATCAC+AGG 0.584230 1:-30089703 MsG0180001973.01.T01:CDS
TATGTGCTTGCAGTGCATAT+CGG 0.587519 1:-30089513 MsG0180001973.01.T01:intron
TATATACCTGTTGCTCCCAA+AGG 0.599601 1:+30086078 None:intergenic
AATTCTAGCCAGGTGAGTGA+TGG 0.600677 1:-30088117 MsG0180001973.01.T01:CDS
CAATATCTCCAACTTCACTT+GGG 0.604564 1:+30089290 None:intergenic
ACTAATCCAATGGCATGGGA+TGG 0.605555 1:-30088888 MsG0180001973.01.T01:CDS
GAAGTATTGCAATGCAAAAG+GGG 0.606399 1:-30088068 MsG0180001973.01.T01:CDS
TCCCCATCCAGAGACTGTGC+CGG 0.611728 1:-30089119 MsG0180001973.01.T01:intron
GGGAGCAGGTACTGGAATGG+GGG 0.619224 1:-30085500 MsG0180001973.01.T01:CDS
CTTTGCAAAGCTAAACGTGG+TGG 0.621994 1:-30089484 MsG0180001973.01.T01:CDS
AAGAGCTAGTGAATGTCGAA+TGG 0.622234 1:-30089236 MsG0180001973.01.T01:CDS
TCACAGGACAGCTGCATTCG+GGG 0.623741 1:-30089687 MsG0180001973.01.T01:CDS
TTAACAGACAATGTTCATCT+GGG 0.630670 1:-30089087 MsG0180001973.01.T01:CDS
TATATGTGTATTGGTGTGTG+TGG 0.651810 1:-30085562 MsG0180001973.01.T01:CDS
AGGTAATCCCCATTGGAAGG+AGG 0.656135 1:+30088685 None:intergenic
AATCATTCCAGTTTCCACCA+AGG 0.667285 1:-30088447 MsG0180001973.01.T01:intron
GGTTGAGTCTCACAGGCGAG+CGG 0.670559 1:-30088504 MsG0180001973.01.T01:CDS
CAAAAGATCAATGTTAACGG+AGG 0.676322 1:-30086120 MsG0180001973.01.T01:CDS
AAAACTGCCTCCTTCCAATG+GGG 0.685024 1:-30088692 MsG0180001973.01.T01:CDS
AATGCATCATTAGCTGACCT+AGG 0.687871 1:-30088278 MsG0180001973.01.T01:CDS
GCTTTGCAACGCCCGCAAAG+GGG 0.700841 1:-30085440 MsG0180001973.01.T01:CDS
TTGCATGAAATGAAGCGACG+TGG 0.723164 1:-30085649 MsG0180001973.01.T01:CDS
GCTCTTTGCAAAGCTAAACG+TGG 0.726080 1:-30089487 MsG0180001973.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAACAATATTAACTATA+TGG + Chr1:30089714-30089733 None:intergenic 10.0%
!! AATATTGTTTATTGTAAATT+GGG - Chr1:30089721-30089740 MsG0180001973.01.T01:CDS 10.0%
!! ATTAATTACAGAATATAATA+TGG - Chr1:30088055-30088074 MsG0180001973.01.T01:CDS 10.0%
!! TAATATTGTTTATTGTAAAT+TGG - Chr1:30089720-30089739 MsG0180001973.01.T01:CDS 10.0%
!!! CTTTTTAAAATAATAATACA+GGG + Chr1:30088032-30088051 None:intergenic 10.0%
!!! TCTTTTTAAAATAATAATAC+AGG + Chr1:30088033-30088052 None:intergenic 10.0%
!!! TTTTTAAAATAATAATACAG+GGG + Chr1:30088031-30088050 None:intergenic 10.0%
!! AAATAAAATTGGTACTTATA+TGG + Chr1:30087552-30087571 None:intergenic 15.0%
!! TACCTAAAGAAAAAAAAAAA+AGG + Chr1:30086307-30086326 None:intergenic 15.0%
!!! AACCTTTTTTTTTTTTCTTT+AGG - Chr1:30086302-30086321 MsG0180001973.01.T01:CDS 15.0%
!!! TTATTTTATTTTTTGGATGT+AGG - Chr1:30089547-30089566 MsG0180001973.01.T01:intron 15.0%
!!! TTTTGTTTGATAATTGATAT+AGG - Chr1:30085643-30085662 MsG0180001973.01.T01:CDS 15.0%
!!! TTTTTCTTATCTTTTCTATT+GGG - Chr1:30087957-30087976 MsG0180001973.01.T01:intron 15.0%
!!! TTTTTTCTTATCTTTTCTAT+TGG - Chr1:30087956-30087975 MsG0180001973.01.T01:intron 15.0%
!!! TTTTTTTTTTCTTTAGGTAT+TGG - Chr1:30086308-30086327 MsG0180001973.01.T01:CDS 15.0%
!! AATATAATATGGCTATTGAA+TGG - Chr1:30088066-30088085 MsG0180001973.01.T01:CDS 20.0%
!! ACAATTATATAATGCACTTT+GGG + Chr1:30087654-30087673 None:intergenic 20.0%
!! GAACTAAAATATCATAAACT+AGG - Chr1:30089483-30089502 MsG0180001973.01.T01:CDS 20.0%
!! TAATAGTTAGAAAGAATTTG+AGG + Chr1:30087062-30087081 None:intergenic 20.0%
!! TATGGAAAAAAAGAATATGA+AGG + Chr1:30088220-30088239 None:intergenic 20.0%
!! TATTTGTGGATAATTTAGAA+AGG - Chr1:30087782-30087801 MsG0180001973.01.T01:intron 20.0%
!!! ATGAAATGTGTGATAATTTT+TGG - Chr1:30087371-30087390 MsG0180001973.01.T01:intron 20.0%
!!! CAATGAGTTGATTTTTAAAA+TGG + Chr1:30088779-30088798 None:intergenic 20.0%
!!! TATTTGATTTGATGAAAATG+TGG + Chr1:30088588-30088607 None:intergenic 20.0%
!!! TGATCTTTTTGAAATAAATG+AGG - Chr1:30088964-30088983 MsG0180001973.01.T01:intron 20.0%
!!! TTTATTAACCGATTTCAAAT+TGG - Chr1:30087260-30087279 MsG0180001973.01.T01:intron 20.0%
!!! TTTTTAGATAATTAGACACA+AGG + Chr1:30088325-30088344 None:intergenic 20.0%
! AAATGGAGAGAAAAGAAAAT+AGG + Chr1:30088705-30088724 None:intergenic 25.0%
! AAGATTCAACAACAATTGTT+TGG + Chr1:30088753-30088772 None:intergenic 25.0%
! AAGTGCATTATATAATTGTG+TGG - Chr1:30087655-30087674 MsG0180001973.01.T01:intron 25.0%
! AATTGAAACGCATATATGTA+CGG + Chr1:30089528-30089547 None:intergenic 25.0%
! ACATAGATATTACTCCATAT+CGG + Chr1:30089627-30089646 None:intergenic 25.0%
! ACTAGGTAACAAATAATAAC+TGG - Chr1:30089500-30089519 MsG0180001973.01.T01:CDS 25.0%
! AGAAATAAAACCTTCAAAAC+AGG + Chr1:30085817-30085836 None:intergenic 25.0%
! CACAATTATATAATGCACTT+TGG + Chr1:30087655-30087674 None:intergenic 25.0%
! CACTGTATGTCTTATAAATA+AGG - Chr1:30087285-30087304 MsG0180001973.01.T01:intron 25.0%
! CGTAGAAAATATCATATTTG+TGG - Chr1:30087768-30087787 MsG0180001973.01.T01:intron 25.0%
! CTATTGATATTTCATGTTCT+TGG - Chr1:30088494-30088513 MsG0180001973.01.T01:CDS 25.0%
! CTTAAAATAATACCTCTAGA+GGG - Chr1:30086467-30086486 MsG0180001973.01.T01:intron 25.0%
! GAAAAAAGGAACAAAAGATA+AGG + Chr1:30089004-30089023 None:intergenic 25.0%
! GAAGTTAGTACATAAACAAA+TGG + Chr1:30089030-30089049 None:intergenic 25.0%
! TAAACAAATGGTGAGAAAAA+AGG + Chr1:30089018-30089037 None:intergenic 25.0%
! TAATTGATATAGGAGATTTG+TGG - Chr1:30085653-30085672 MsG0180001973.01.T01:CDS 25.0%
! TAGATATAGGAAAGTTAATC+TGG + Chr1:30087485-30087504 None:intergenic 25.0%
! TATACCTTTATAGTGCAAAT+TGG + Chr1:30086826-30086845 None:intergenic 25.0%
! TATCACATTAACACTTTGTT+TGG + Chr1:30088257-30088276 None:intergenic 25.0%
! TCAAATGTCAAAACTATGTT+TGG - Chr1:30087821-30087840 MsG0180001973.01.T01:intron 25.0%
! TCACAAAAGATCAATGTTAA+CGG - Chr1:30089118-30089137 MsG0180001973.01.T01:intron 25.0%
! TCTTAAAATAATACCTCTAG+AGG - Chr1:30086466-30086485 MsG0180001973.01.T01:intron 25.0%
! TGGTAACTTTCAAAACAAAA+AGG + Chr1:30089279-30089298 None:intergenic 25.0%
! TTATATCATGTTAAAGAGCA+GGG + Chr1:30087327-30087346 None:intergenic 25.0%
! TTATCAGCAAGATTTAGTTA+TGG + Chr1:30086706-30086725 None:intergenic 25.0%
! TTGCTGATAATATTGTTGAT+AGG - Chr1:30086716-30086735 MsG0180001973.01.T01:intron 25.0%
! TTTATATCATGTTAAAGAGC+AGG + Chr1:30087328-30087347 None:intergenic 25.0%
! TTTGTTTGGTATACTTGAAA+AGG + Chr1:30088243-30088262 None:intergenic 25.0%
!! AACTTGAATTGATTCAACAT+AGG + Chr1:30087515-30087534 None:intergenic 25.0%
!! GGATTTTATGATATTGGTAA+AGG - Chr1:30086216-30086235 MsG0180001973.01.T01:intron 25.0%
!! GTATATTGAATTTTCCTTTC+AGG - Chr1:30086841-30086860 MsG0180001973.01.T01:intron 25.0%
!! TCAATGATTTGCATATATTC+AGG - Chr1:30089048-30089067 MsG0180001973.01.T01:CDS 25.0%
!! TTACATATTGTTTGGAACTT+TGG + Chr1:30088676-30088695 None:intergenic 25.0%
!! TTATTTGTTGGTTGTAATGT+AGG - Chr1:30088840-30088859 MsG0180001973.01.T01:intron 25.0%
!!! ATATGATGTCTTTTTCACTT+TGG + Chr1:30088543-30088562 None:intergenic 25.0%
AAAGCTGTGTTTAAGAAAGA+CGG - Chr1:30086993-30087012 MsG0180001973.01.T01:intron 30.0%
AACGTGAACTAAAGTAGTAA+AGG + Chr1:30085851-30085870 None:intergenic 30.0%
AATAAGCAATGAGAATTGAG+AGG - Chr1:30088604-30088623 MsG0180001973.01.T01:intron 30.0%
AATTCCATCATCAACAGAAA+TGG + Chr1:30086937-30086956 None:intergenic 30.0%
ACAAATTATCTAGACATACC+AGG + Chr1:30086051-30086070 None:intergenic 30.0%
AGAGCAGTGAGAAATAAAAT+TGG + Chr1:30087563-30087582 None:intergenic 30.0%
AGTATCAAATGCCACAATAA+AGG + Chr1:30087716-30087735 None:intergenic 30.0%
AGTGATGGTAGGAAATAAAA+TGG + Chr1:30088722-30088741 None:intergenic 30.0%
ATCTGACGAACATTATTTGT+TGG - Chr1:30088828-30088847 MsG0180001973.01.T01:intron 30.0%
ATTTCTTACTTTGTCATGAC+AGG - Chr1:30086505-30086524 MsG0180001973.01.T01:intron 30.0%
CATAGGAAGGAAATAGATAT+AGG + Chr1:30087498-30087517 None:intergenic 30.0%
CATGTATAAAATATGTGCCT+TGG - Chr1:30089427-30089446 MsG0180001973.01.T01:intron 30.0%
CCAGATTAATTAATTCGTCT+AGG - Chr1:30086427-30086446 MsG0180001973.01.T01:intron 30.0%
CCTAGACGAATTAATTAATC+TGG + Chr1:30086430-30086449 None:intergenic 30.0%
CGAATTAATTAATCTGGCAA+AGG + Chr1:30086424-30086443 None:intergenic 30.0%
GAAAAACGGAAAATTACTCT+AGG + Chr1:30086389-30086408 None:intergenic 30.0%
GACTTCTATTCAATAGATTG+TGG - Chr1:30086881-30086900 MsG0180001973.01.T01:intron 30.0%
GGAGATAAAGTTAGGAAAAA+CGG + Chr1:30086403-30086422 None:intergenic 30.0%
GTATCAAATGCCACAATAAA+GGG + Chr1:30087715-30087734 None:intergenic 30.0%
TATCAAATGCCACAATAAAG+GGG + Chr1:30087714-30087733 None:intergenic 30.0%
TCAAATCACGTTCATGTAAA+TGG + Chr1:30085893-30085912 None:intergenic 30.0%
TCGGTTAATAAATATCGTCA+CGG + Chr1:30087252-30087271 None:intergenic 30.0%
TTAACAGACAATGTTCATCT+GGG - Chr1:30086154-30086173 MsG0180001973.01.T01:CDS 30.0%
TTATATAATGCACTTTGGGT+TGG + Chr1:30087650-30087669 None:intergenic 30.0%
TTGGACAAATATCAAATCAG+TGG - Chr1:30087390-30087409 MsG0180001973.01.T01:intron 30.0%
TTGGTATACTTGAAAAGGTA+TGG + Chr1:30088238-30088257 None:intergenic 30.0%
TTTCTGATTTCTCACTTTCA+TGG + Chr1:30089462-30089481 None:intergenic 30.0%
TTTGCCAATTTGCACTATAA+AGG - Chr1:30086819-30086838 MsG0180001973.01.T01:intron 30.0%
! CAAAAACTTTGGTGTGAAAA+TGG + Chr1:30088410-30088429 None:intergenic 30.0%
! CAAGGCACATATTTTATACA+TGG + Chr1:30089429-30089448 None:intergenic 30.0%
! GTCAAAACTATGTTTGGTTT+AGG - Chr1:30087827-30087846 MsG0180001973.01.T01:intron 30.0%
! TACTTTTCGGTTGTTACAAA+TGG - Chr1:30088168-30088187 MsG0180001973.01.T01:intron 30.0%
! TATATAATGCACTTTGGGTT+GGG + Chr1:30087649-30087668 None:intergenic 30.0%
! TGAATTGATTCAACATAGGA+AGG + Chr1:30087511-30087530 None:intergenic 30.0%
! TGATTTGATGTCTGTGTTTT+AGG - Chr1:30087100-30087119 MsG0180001973.01.T01:intron 30.0%
! TGTTGAACATTTGATTTCAC+AGG - Chr1:30085497-30085516 MsG0180001973.01.T01:CDS 30.0%
!! AAATACAAGTTGTTGACTTG+TGG + Chr1:30089189-30089208 None:intergenic 30.0%
!! AAGAAGTATTGCAATGCAAA+AGG - Chr1:30087171-30087190 MsG0180001973.01.T01:intron 30.0%
!! AGAAGTATTGCAATGCAAAA+GGG - Chr1:30087172-30087191 MsG0180001973.01.T01:intron 30.0%
!! GAATTTTCCTTTCAGGTATT+AGG - Chr1:30086848-30086867 MsG0180001973.01.T01:intron 30.0%
!! GCTTTGAATTGAACTTGTTA+TGG - Chr1:30085458-30085477 MsG0180001973.01.T01:CDS 30.0%
!! GGTGGATTTTACATATTGTT+TGG + Chr1:30088684-30088703 None:intergenic 30.0%
!! TTGAATTGAACTTGTTATGG+TGG - Chr1:30085461-30085480 MsG0180001973.01.T01:CDS 30.0%
AAAATATGTGCCTTGGTACA+TGG - Chr1:30089434-30089453 MsG0180001973.01.T01:intron 35.0%
AACAACAATTGTTTGGATGC+AGG + Chr1:30088746-30088765 None:intergenic 35.0%
ACAACAATTGTTTGGATGCA+GGG + Chr1:30088745-30088764 None:intergenic 35.0%
ACAATATCTCCAACTTCACT+TGG + Chr1:30085955-30085974 None:intergenic 35.0%
ACCACAATCAAAAGAATGCA+AGG + Chr1:30087744-30087763 None:intergenic 35.0%
ATCAGAACCTAATACCTGAA+AGG + Chr1:30086858-30086877 None:intergenic 35.0%
ATCCATGACAACTAATCCAA+TGG - Chr1:30086343-30086362 MsG0180001973.01.T01:CDS 35.0%
CAAAAGATCAATGTTAACGG+AGG - Chr1:30089121-30089140 MsG0180001973.01.T01:intron 35.0%
CAACTCATTGCAGAATTGTA+TGG - Chr1:30088789-30088808 MsG0180001973.01.T01:intron 35.0%
CAATATCTCCAACTTCACTT+GGG + Chr1:30085954-30085973 None:intergenic 35.0%
CCACAATCAAAAGAATGCAA+GGG + Chr1:30087743-30087762 None:intergenic 35.0%
CTTACGGAAGACAAAAACTT+TGG + Chr1:30088421-30088440 None:intergenic 35.0%
GAAGTTGGAGATATTGTTGT+CGG - Chr1:30085958-30085977 MsG0180001973.01.T01:intron 35.0%
GATCTATCTCTCAAACACAT+TGG + Chr1:30089299-30089318 None:intergenic 35.0%
GATGCAAGTATTTATCTTCG+AGG - Chr1:30087593-30087612 MsG0180001973.01.T01:intron 35.0%
GGAGTAATATCTATGTGCAT+TGG - Chr1:30089631-30089650 MsG0180001973.01.T01:intron 35.0%
GGTGTATTCAGGTACTTAAT+TGG - Chr1:30087208-30087227 MsG0180001973.01.T01:intron 35.0%
GTTAACAGACAATGTTCATC+TGG - Chr1:30086153-30086172 MsG0180001973.01.T01:CDS 35.0%
GTTTATTGTAAATTGGGAGC+AGG - Chr1:30089727-30089746 MsG0180001973.01.T01:intron 35.0%
TACCTGAATACACCAAGAAT+GGG + Chr1:30087202-30087221 None:intergenic 35.0%
TAGATGAGTAAAAGTGAGAG+TGG + Chr1:30088477-30088496 None:intergenic 35.0%
TATAAATAAGGAAAGCCCAG+TGG - Chr1:30087297-30087316 MsG0180001973.01.T01:intron 35.0%
TGGAGAGAAAAGAAAATAGG+TGG + Chr1:30088702-30088721 None:intergenic 35.0%
TTATGATCTTATACCAGCAG+TGG + Chr1:30087024-30087043 None:intergenic 35.0%
! AAGTTTTTGTCTTCCGTAAG+TGG - Chr1:30088421-30088440 MsG0180001973.01.T01:intron 35.0%
! ACAGTGTGCCAATTTGAAAT+CGG + Chr1:30087271-30087290 None:intergenic 35.0%
! ACTCATCATGCTTGTCTTTT+AGG - Chr1:30088369-30088388 MsG0180001973.01.T01:intron 35.0%
! AGGGAGACGATTTTATTGAT+GGG - Chr1:30088119-30088138 MsG0180001973.01.T01:CDS 35.0%
! AGGGCTGGATTTTATGATAT+TGG - Chr1:30086210-30086229 MsG0180001973.01.T01:intron 35.0%
! ATTTCTCCTCACCAGTTTTT+GGG + Chr1:30086908-30086927 None:intergenic 35.0%
! CCATTTTATCTCTCCACTTA+CGG + Chr1:30088437-30088456 None:intergenic 35.0%
! CGTGATTTGAGTTTCATTGT+AGG - Chr1:30085903-30085922 MsG0180001973.01.T01:intron 35.0%
! TATATGTGTATTGGTGTGTG+TGG - Chr1:30089679-30089698 MsG0180001973.01.T01:CDS 35.0%
! TGTAACAACCGAAAAGTATG+TGG + Chr1:30088166-30088185 None:intergenic 35.0%
! TGTTTGGAACTTTGGACTTT+AGG + Chr1:30088668-30088687 None:intergenic 35.0%
! TTTTCGGTTGTTACAAATGG+TGG - Chr1:30088171-30088190 MsG0180001973.01.T01:intron 35.0%
!! AATCAAGTCCTAGCTTGTTA+CGG + Chr1:30089099-30089118 None:intergenic 35.0%
!! ATTGTTGTCGGTTCTGTATT+GGG - Chr1:30085970-30085989 MsG0180001973.01.T01:intron 35.0%
!! GAAGTATTGCAATGCAAAAG+GGG - Chr1:30087173-30087192 MsG0180001973.01.T01:intron 35.0%
!! TATTGTTGTCGGTTCTGTAT+TGG - Chr1:30085969-30085988 MsG0180001973.01.T01:intron 35.0%
!! TGTTTTAGGTAATTCTAGCC+AGG - Chr1:30087114-30087133 MsG0180001973.01.T01:intron 35.0%
!! TTGCATTCTTTTGATTGTGG+TGG - Chr1:30087743-30087762 MsG0180001973.01.T01:intron 35.0%
!! TTGCTGTTCCACATACTTTT+CGG - Chr1:30088155-30088174 MsG0180001973.01.T01:intron 35.0%
!!! TTTTCTTTAGGTATTGGTGC+CGG - Chr1:30086314-30086333 MsG0180001973.01.T01:CDS 35.0%
AAACCTTCAAAACAGGAGCT+AGG + Chr1:30085810-30085829 None:intergenic 40.0%
AACTTCACTTGGGTTCAAGT+TGG + Chr1:30085944-30085963 None:intergenic 40.0%
AACTTGAACCCAAGTGAAGT+TGG - Chr1:30085943-30085962 MsG0180001973.01.T01:intron 40.0%
AAGAGCTAGTGAATGTCGAA+TGG - Chr1:30086005-30086024 MsG0180001973.01.T01:intron 40.0%
AAGTATGTGGAACAGCAAAG+TGG + Chr1:30088153-30088172 None:intergenic 40.0%
AATCATTCCAGTTTCCACCA+AGG - Chr1:30086794-30086813 MsG0180001973.01.T01:intron 40.0%
AATGCATCATTAGCTGACCT+AGG - Chr1:30086963-30086982 MsG0180001973.01.T01:intron 40.0%
AGGTCAGCTAATGATGCATT+GGG + Chr1:30086963-30086982 None:intergenic 40.0%
AGTATGTGGAACAGCAAAGT+GGG + Chr1:30088152-30088171 None:intergenic 40.0%
AGTTGTCATGGATTCCAAAC+CGG + Chr1:30086336-30086355 None:intergenic 40.0%
CAAATTGGCAAATACCTTGG+TGG + Chr1:30086811-30086830 None:intergenic 40.0%
CAATAAAATCGTCTCCCTGA+TGG + Chr1:30088117-30088136 None:intergenic 40.0%
CCGTAAGTGGAGAGATAAAA+TGG - Chr1:30088434-30088453 MsG0180001973.01.T01:intron 40.0%
CTCTGTGCGTATATGTGTAT+TGG - Chr1:30089670-30089689 MsG0180001973.01.T01:CDS 40.0%
CTGAATCTGATCGATGATTC+TGG - Chr1:30086075-30086094 MsG0180001973.01.T01:intron 40.0%
CTGGCAAAGGAGATAAAGTT+AGG + Chr1:30086411-30086430 None:intergenic 40.0%
GAAAATGTTGCCAATCGCTT+TGG - Chr1:30086581-30086600 MsG0180001973.01.T01:intron 40.0%
GACAACTAATCCAATGGCAT+GGG - Chr1:30086349-30086368 MsG0180001973.01.T01:CDS 40.0%
GAGCATCCTTGGATAAGAAA+AGG + Chr1:30089831-30089850 None:intergenic 40.0%
GTACCTGAATACACCAAGAA+TGG + Chr1:30087203-30087222 None:intergenic 40.0%
GTATATTGCCGTAACAAGCT+AGG - Chr1:30089088-30089107 MsG0180001973.01.T01:CDS 40.0%
GTGCAAATTGGCAAATACCT+TGG + Chr1:30086814-30086833 None:intergenic 40.0%
TAGATTGTGGACCCAAAAAC+TGG - Chr1:30086894-30086913 MsG0180001973.01.T01:intron 40.0%
TAGGTCAGCTAATGATGCAT+TGG + Chr1:30086964-30086983 None:intergenic 40.0%
TATATACCTGTTGCTCCCAA+AGG + Chr1:30089166-30089185 None:intergenic 40.0%
TATGTGCTTGCAGTGCATAT+CGG - Chr1:30085728-30085747 MsG0180001973.01.T01:intron 40.0%
TCTATTGGGTAGAAAGTGAG+AGG - Chr1:30087971-30087990 MsG0180001973.01.T01:intron 40.0%
TGACAACTAATCCAATGGCA+TGG - Chr1:30086348-30086367 MsG0180001973.01.T01:CDS 40.0%
TGATGTAGCTGCTGCTATAA+GGG - Chr1:30086191-30086210 MsG0180001973.01.T01:intron 40.0%
TGTCTGTTAACTGTCCTAAC+CGG + Chr1:30086144-30086163 None:intergenic 40.0%
TTGGAACTTTGGACTTTAGG+TGG + Chr1:30088665-30088684 None:intergenic 40.0%
! CAGGGAGACGATTTTATTGA+TGG - Chr1:30088118-30088137 MsG0180001973.01.T01:CDS 40.0%
! GATTTCTCCTCACCAGTTTT+TGG + Chr1:30086909-30086928 None:intergenic 40.0%
! GGACAACCTTTTCTTATCCA+AGG - Chr1:30089822-30089841 MsG0180001973.01.T01:intron 40.0%
! GTCACCATTTCTGTTGATGA+TGG - Chr1:30086930-30086949 MsG0180001973.01.T01:intron 40.0%
! TATGTGCTATTGCGCTCAAT+TGG + Chr1:30087625-30087644 None:intergenic 40.0%
! TCTGATCGATGATTCTGGTT+AGG - Chr1:30086080-30086099 MsG0180001973.01.T01:intron 40.0%
! TTTTCAGAGGTAATCCCCAT+TGG + Chr1:30086566-30086585 None:intergenic 40.0%
!! ACACAGCTTTAAGCTTTCCT+AGG + Chr1:30086983-30087002 None:intergenic 40.0%
!! CCCTTGCATTCTTTTGATTG+TGG - Chr1:30087740-30087759 MsG0180001973.01.T01:intron 40.0%
!! TATCCTAGCTCCTGTTTTGA+AGG - Chr1:30085804-30085823 MsG0180001973.01.T01:intron 40.0%
!! TGCCATTGGATTAGTTGTCA+TGG + Chr1:30086348-30086367 None:intergenic 40.0%
!!! GCATTTTATGCTGGTTTTCC+TGG - Chr1:30086030-30086049 MsG0180001973.01.T01:intron 40.0%
AAAACTGCCTCCTTCCAATG+GGG - Chr1:30086549-30086568 MsG0180001973.01.T01:intron 45.0%
AATGGCAATTGGGCATCCTT+TGG - Chr1:30089147-30089166 MsG0180001973.01.T01:intron 45.0%
AATTCTAGCCAGGTGAGTGA+TGG - Chr1:30087124-30087143 MsG0180001973.01.T01:intron 45.0%
ACTAATCCAATGGCATGGGA+TGG - Chr1:30086353-30086372 MsG0180001973.01.T01:CDS 45.0%
AGAAAAGGTTGTCCCCTTTG+CGG + Chr1:30089816-30089835 None:intergenic 45.0%
AGCAATGATGCTGTAGCTCA+TGG + Chr1:30089219-30089238 None:intergenic 45.0%
ATGGCAATTGGGCATCCTTT+GGG - Chr1:30089148-30089167 MsG0180001973.01.T01:intron 45.0%
CAAAACTGCCTCCTTCCAAT+GGG - Chr1:30086548-30086567 MsG0180001973.01.T01:intron 45.0%
CAACATGACACTGAGACATG+TGG + Chr1:30089356-30089375 None:intergenic 45.0%
CACATGTCTCAGTGTCATGT+TGG - Chr1:30089354-30089373 MsG0180001973.01.T01:intron 45.0%
CCTTGAAACTCCAAAGCGAT+TGG + Chr1:30086594-30086613 None:intergenic 45.0%
CTGATGTAGCTGCTGCTATA+AGG - Chr1:30086190-30086209 MsG0180001973.01.T01:intron 45.0%
CTTTGCAAAGCTAAACGTGG+TGG - Chr1:30085757-30085776 MsG0180001973.01.T01:intron 45.0%
GCAAATACCTTGGTGGAAAC+TGG + Chr1:30086804-30086823 None:intergenic 45.0%
GCTCTTTGCAAAGCTAAACG+TGG - Chr1:30085754-30085773 MsG0180001973.01.T01:intron 45.0%
TATCACAGGACAGCTGCATT+CGG - Chr1:30085552-30085571 MsG0180001973.01.T01:CDS 45.0%
TGATCTTATACCAGCAGTGG+TGG + Chr1:30087021-30087040 None:intergenic 45.0%
TGCAATTCCAGTTGCTGTGA+AGG - Chr1:30088916-30088935 MsG0180001973.01.T01:CDS 45.0%
TGTAAATTGGGAGCAGGTAC+TGG - Chr1:30089733-30089752 MsG0180001973.01.T01:intron 45.0%
TGTCCAGACACACCTTCAAA+CGG - Chr1:30089377-30089396 MsG0180001973.01.T01:intron 45.0%
TTGCATGAAATGAAGCGACG+TGG - Chr1:30089592-30089611 MsG0180001973.01.T01:intron 45.0%
TTTCATGGCTCCATGTACCA+AGG + Chr1:30089447-30089466 None:intergenic 45.0%
! AATACCTCTAGAGGGCTTCA+AGG - Chr1:30086475-30086494 MsG0180001973.01.T01:intron 45.0%
! CAATGTTAACGGAGGTGCAA+TGG - Chr1:30089129-30089148 MsG0180001973.01.T01:intron 45.0%
! CATTGGAAGGAGGCAGTTTT+GGG + Chr1:30086549-30086568 None:intergenic 45.0%
! CGAATGGCTGCATTTTATGC+TGG - Chr1:30086021-30086040 MsG0180001973.01.T01:intron 45.0%
! GCGATTGGCAACATTTTCAG+AGG + Chr1:30086579-30086598 None:intergenic 45.0%
! GTTGATAGGTTGAGTCTCAC+AGG - Chr1:30086730-30086749 MsG0180001973.01.T01:intron 45.0%
! TGCCCATTCTTGGTGTATTC+AGG - Chr1:30087197-30087216 MsG0180001973.01.T01:intron 45.0%
!! CCAATCGCTTTGGAGTTTCA+AGG - Chr1:30086591-30086610 MsG0180001973.01.T01:intron 45.0%
!! TTCCTGCTTTTCGTCCATCA+GGG - Chr1:30088100-30088119 MsG0180001973.01.T01:CDS 45.0%
!! TTTAGGTATTGGTGCCGGTT+TGG - Chr1:30086319-30086338 MsG0180001973.01.T01:CDS 45.0%
!!! TTTCAATTTATTTTATTTTT+TGG - Chr1:30089540-30089559 MsG0180001973.01.T01:intron 5.0%
AAAGAGCAGGGCAATCCACT+GGG + Chr1:30087315-30087334 None:intergenic 50.0%
ACTGATCCATCCCATGCCAT+TGG + Chr1:30086362-30086381 None:intergenic 50.0%
AGGTAATCCCCATTGGAAGG+AGG + Chr1:30086559-30086578 None:intergenic 50.0%
ATCACAGGACAGCTGCATTC+GGG - Chr1:30085553-30085572 MsG0180001973.01.T01:CDS 50.0%
CAACTGGAATTGCAGCAGCT+GGG + Chr1:30088910-30088929 None:intergenic 50.0%
CAGAGGTAATCCCCATTGGA+AGG + Chr1:30086562-30086581 None:intergenic 50.0%
CCAAAACTGCCTCCTTCCAA+TGG - Chr1:30086547-30086566 MsG0180001973.01.T01:intron 50.0%
CGTGCAGTGTTATGTGTCTG+TGG + Chr1:30089331-30089350 None:intergenic 50.0%
CTTATCCAAGGATGCTCGCT+AGG - Chr1:30089834-30089853 MsG0180001973.01.T01:intron 50.0%
GAAAAGGTTGTCCCCTTTGC+GGG + Chr1:30089815-30089834 None:intergenic 50.0%
GTCGCAGTACCCCTTTATTG+TGG - Chr1:30087702-30087721 MsG0180001973.01.T01:intron 50.0%
TAAAGAGCAGGGCAATCCAC+TGG + Chr1:30087316-30087335 None:intergenic 50.0%
TGAAATGAAGCGACGTGGCA+AGG - Chr1:30089597-30089616 MsG0180001973.01.T01:intron 50.0%
TGCGACACAGTGCAGAAAAC+AGG + Chr1:30087688-30087707 None:intergenic 50.0%
TGTAGGAGTTTCGTCGCAGT+TGG - Chr1:30088857-30088876 MsG0180001973.01.T01:intron 50.0%
TGTGGACCCAAAAACTGGTG+AGG - Chr1:30086899-30086918 MsG0180001973.01.T01:intron 50.0%
TGTTTGGATGCAGGGAGTGA+TGG + Chr1:30088737-30088756 None:intergenic 50.0%
TTCACAGGCTTCAGCGTGTT+TGG - Chr1:30085512-30085531 MsG0180001973.01.T01:CDS 50.0%
! AACGGAGGTGCAATGGCAAT+TGG - Chr1:30089136-30089155 MsG0180001973.01.T01:intron 50.0%
! ACGGAGGTGCAATGGCAATT+GGG - Chr1:30089137-30089156 MsG0180001973.01.T01:intron 50.0%
! CCATTGGAAGGAGGCAGTTT+TGG + Chr1:30086550-30086569 None:intergenic 50.0%
! CTGATGGACGAAAAGCAGGA+AGG + Chr1:30088101-30088120 None:intergenic 50.0%
! CTTCCGTTTGAAGGTGTGTC+TGG + Chr1:30089383-30089402 None:intergenic 50.0%
!! ATTGGGAGCAGGTACTGGAA+TGG - Chr1:30089738-30089757 MsG0180001973.01.T01:intron 50.0%
!! CTTCCTGCTTTTCGTCCATC+AGG - Chr1:30088099-30088118 MsG0180001973.01.T01:CDS 50.0%
!! GAGACAGTGCTGCTTATCAC+AGG - Chr1:30085538-30085557 MsG0180001973.01.T01:CDS 50.0%
!! GCAGCTGCAGTTTTTGAGAG+AGG - Chr1:30089763-30089782 MsG0180001973.01.T01:intron 50.0%
!! GGTGTTGATCCTGCCATCAT+GGG - Chr1:30088878-30088897 MsG0180001973.01.T01:CDS 50.0%
!! TGGTGTTGATCCTGCCATCA+TGG - Chr1:30088877-30088896 MsG0180001973.01.T01:CDS 50.0%
!! TTGGGAGCAGGTACTGGAAT+GGG - Chr1:30089739-30089758 MsG0180001973.01.T01:intron 50.0%
AAAGACGGAACCACCACTGC+TGG - Chr1:30087008-30087027 MsG0180001973.01.T01:intron 55.0%
AACCGGCACAGTCTCTGGAT+GGG + Chr1:30086127-30086146 None:intergenic 55.0%
ACAGGCTTCAGCGTGTTTGG+CGG - Chr1:30085515-30085534 MsG0180001973.01.T01:CDS 55.0%
ACGACCTTGAAGCCCTCTAG+AGG + Chr1:30086482-30086501 None:intergenic 55.0%
AGCTTTGCAACGCCCGCAAA+GGG - Chr1:30089800-30089819 MsG0180001973.01.T01:intron 55.0%
CAAAAGGGGCTGCCCATTCT+TGG - Chr1:30087187-30087206 MsG0180001973.01.T01:intron 55.0%
GATCCTGCCATCATGGGTGT+TGG - Chr1:30088884-30088903 MsG0180001973.01.T01:CDS 55.0%
GCAACTGGAATTGCAGCAGC+TGG + Chr1:30088911-30088930 None:intergenic 55.0%
GTAGCTGCTGCTATAAGGGC+TGG - Chr1:30086195-30086214 MsG0180001973.01.T01:intron 55.0%
TAACCGGCACAGTCTCTGGA+TGG + Chr1:30086128-30086147 None:intergenic 55.0%
TCACAGGACAGCTGCATTCG+GGG - Chr1:30085554-30085573 MsG0180001973.01.T01:CDS 55.0%
TGGATGCAGGGAGTGATGGT+AGG + Chr1:30088733-30088752 None:intergenic 55.0%
! CTCCCTGATGGACGAAAAGC+AGG + Chr1:30088105-30088124 None:intergenic 55.0%
! GTCGGTTCTGTATTGGGAGC+TGG - Chr1:30085976-30085995 MsG0180001973.01.T01:intron 55.0%
!! ATCCAGAGACTGTGCCGGTT+AGG - Chr1:30086127-30086146 MsG0180001973.01.T01:CDS 55.0%
!! TGGGAGCAGGTACTGGAATG+GGG - Chr1:30089740-30089759 MsG0180001973.01.T01:intron 55.0%
ACCGGCACAGTCTCTGGATG+GGG + Chr1:30086126-30086145 None:intergenic 60.0%
AGCTGGGCCAACACCCATGA+TGG + Chr1:30088894-30088913 None:intergenic 60.0%
CAGGCTTCAGCGTGTTTGGC+GGG - Chr1:30085516-30085535 MsG0180001973.01.T01:CDS 60.0%
CCAGTTGCTGTGAAGGCTGC+AGG - Chr1:30088923-30088942 MsG0180001973.01.T01:intron 60.0%
CCTGCAGCCTTCACAGCAAC+TGG + Chr1:30088926-30088945 None:intergenic 60.0%
CGTGGCAAGGACTGCCGATA+TGG - Chr1:30089610-30089629 MsG0180001973.01.T01:intron 60.0%
CTCCAGCACCATCACTCACC+TGG + Chr1:30087135-30087154 None:intergenic 60.0%
GAGCTTTGCAACGCCCGCAA+AGG - Chr1:30089799-30089818 MsG0180001973.01.T01:intron 60.0%
GCTTTGCAACGCCCGCAAAG+GGG - Chr1:30089801-30089820 MsG0180001973.01.T01:intron 60.0%
GGTTGAGTCTCACAGGCGAG+CGG - Chr1:30086737-30086756 MsG0180001973.01.T01:intron 60.0%
GTCCTAACCGGCACAGTCTC+TGG + Chr1:30086132-30086151 None:intergenic 60.0%
TCCCCATCCAGAGACTGTGC+CGG - Chr1:30086122-30086141 MsG0180001973.01.T01:CDS 60.0%
! AGCCAGGTGAGTGATGGTGC+TGG - Chr1:30087130-30087149 MsG0180001973.01.T01:intron 60.0%
! GGGCATCCTTTGGGAGCAAC+AGG - Chr1:30089157-30089176 MsG0180001973.01.T01:intron 60.0%
!! GGGAGCAGGTACTGGAATGG+GGG - Chr1:30089741-30089760 MsG0180001973.01.T01:intron 60.0%
GGGCCAACACCCATGATGGC+AGG + Chr1:30088890-30088909 None:intergenic 65.0%
GCGGCTGCTGCTACTGCTGC+TGG - Chr1:30086756-30086775 MsG0180001973.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 30085408 30089855 30085408 ID=MsG0180001973.01;Name=MsG0180001973.01
Chr1 mRNA 30085408 30089855 30085408 ID=MsG0180001973.01.T01;Parent=MsG0180001973.01;Name=MsG0180001973.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0.91|0.84|1|1|1|13|0|467
Chr1 exon 30089844 30089855 30089844 ID=MsG0180001973.01.T01:exon:19135;Parent=MsG0180001973.01.T01
Chr1 exon 30089668 30089744 30089668 ID=MsG0180001973.01.T01:exon:19134;Parent=MsG0180001973.01.T01
Chr1 exon 30089438 30089522 30089438 ID=MsG0180001973.01.T01:exon:19133;Parent=MsG0180001973.01.T01
Chr1 exon 30089212 30089338 30089212 ID=MsG0180001973.01.T01:exon:19132;Parent=MsG0180001973.01.T01
Chr1 exon 30089032 30089130 30089032 ID=MsG0180001973.01.T01:exon:19131;Parent=MsG0180001973.01.T01
Chr1 exon 30088872 30088939 30088872 ID=MsG0180001973.01.T01:exon:19130;Parent=MsG0180001973.01.T01
Chr1 exon 30088629 30088736 30088629 ID=MsG0180001973.01.T01:exon:19129;Parent=MsG0180001973.01.T01
Chr1 exon 30088448 30088525 30088448 ID=MsG0180001973.01.T01:exon:19128;Parent=MsG0180001973.01.T01
Chr1 exon 30088234 30088366 30088234 ID=MsG0180001973.01.T01:exon:19127;Parent=MsG0180001973.01.T01
Chr1 exon 30088045 30088141 30088045 ID=MsG0180001973.01.T01:exon:19126;Parent=MsG0180001973.01.T01
Chr1 exon 30086278 30086401 30086278 ID=MsG0180001973.01.T01:exon:19125;Parent=MsG0180001973.01.T01
Chr1 exon 30086085 30086193 30086085 ID=MsG0180001973.01.T01:exon:19124;Parent=MsG0180001973.01.T01
Chr1 exon 30085408 30085694 30085408 ID=MsG0180001973.01.T01:exon:19123;Parent=MsG0180001973.01.T01
Chr1 CDS 30089844 30089855 30089844 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30089668 30089744 30089668 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30089438 30089522 30089438 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30089212 30089338 30089212 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30089032 30089130 30089032 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30088872 30088939 30088872 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30088629 30088736 30088629 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30088448 30088525 30088448 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30088234 30088366 30088234 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30088045 30088141 30088045 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30086278 30086401 30086278 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30086085 30086193 30086085 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Chr1 CDS 30085408 30085694 30085408 ID=MsG0180001973.01.T01:cds;Parent=MsG0180001973.01.T01
Gene Sequence

>MsG0180001973.01.T01

ATGGAGATGCATGCTTCAGCGTGTTTGGCGGGAGACAGTGCTGCTTATCACAGGACAGCTGCATTCGGGGACGATGTAGTGATTGTAGCTGCATATCGGACTGCTCTTTGCAAAGCTAAACGTGGTGGTTTCAAAGACACTCACGCTGATGATATCCTAGCTCCTGTTTTGAAGGCTGTAATAGAGAAAACCAACTTGAACCCAAGTGAAGTTGGAGATATTGTTGTCGGTTCTGTATTGGGAGCTGGATCTCAAAGAGCTAGTGAATGTCGAATGGCTGCATTTTATGCTGGTTTTCCTGAGACTGTGCCGGTTAGGACAGTTAACAGACAATGTTCATCTGGGCTACAAGCTGTTGCTGATGTAGCTGCTGCTATAAGGGCTGGATTTTATGATATTGGTATTGGTGCCGGTTTGGAATCCATGACAACTAATCCAATGGCATGGGATGGATCAGTGAATCCTAGAGTGAAAATGTTTGAACAAGCCCAAAACTGCCTCCTTCCAATGGGGATTACCTCTGAAAATGTTGCCAATCGCTTTGGAGTTTCAAGGAAAGAGCAAGATGAAGCTGCAGTTGAGTCTCACAGGCGAGCGGCTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATCATTCCAGTTTCCACCAAGATTGTGGACCCAAAAACTGGTGAGGAGAAATCAGTCACCATTTCTGTTGATGATGGAATTCGACCCAATGCATCATTAGCTGACCTAGGAAAGCTTAAAGCTGTGTTTAAGAAAGACGGAACCACCACTGCTGGTAATTCTAGCCAGGTGAGTGATGGTGCTGGAGCTGTTCTGCTGATGAAAAGAAGTATTGCAATGCAAAAGGGGCTGCCCATTCTTGGTGTATTCAGGAGTTTCGTCGCAGTTGGTGTTGATCCTGCCATCATGGGTGTTGGCCCAGCTGCTGCAATTCCAGTTGCTGTGAAGGCTGCAGGTCTAGAGCTTGATGACATTGATCTTTTTGAAATAAATGAGGCTTTTGCTTCTCAGTTCGTATATTGCCGTAACAAGCTAGGACTTGATTCACAAAAGATCAATGTTAACGGAGGTGCAATGGCAATTGGGCATCCTTTGGGAGCAACAGGTGCTCGATGTGTAGCAACTCTATTGCATGAAATGAAGCGACGTGGCAAGGACTGCCGATATGGAGTAATATCTATGTGCATTGGTACACTCACTTTCTCACTCTGTGCGTATATGTGTATTGGTGTGTGTGGTTTTGAACACCATATAGTTAATATTGTTTATTGTAAATTGGGAGCAGGTACTGGAATGGGGGCAGCTGCAGTTTTTGAGAGAGGTGATTCTGTTGATGAGCTTTGCAACGCCCGCAAAGGGGACAACCTTTTCTTATCCAAGGATGCTCGCTAG
Protein sequence

>MsG0180001973.01.T01

MEMHASACLAGDSAAYHRTAAFGDDVVIVAAYRTALCKAKRGGFKDTHADDILAPVLKAVIEKTNLNPSEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIRAGFYDIGIGAGLESMTTNPMAWDGSVNPRVKMFEQAQNCLLPMGITSENVANRFGVSRKEQDEAAVESHRRAAAATAAGRFKDEIIPVSTKIVDPKTGEEKSVTISVDDGIRPNASLADLGKLKAVFKKDGTTTAGNSSQVSDGAGAVLLMKRSIAMQKGLPILGVFRSFVAVGVDPAIMGVGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDSQKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRYGVISMCIGTLTFSLCAYMCIGVCGFEHHIVNIVYCKLGAGTGMGAAAVFERGDSVDELCNARKGDNLFLSKDAR*