AlfalfaGEDB | MsG0780039595.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039595.01

KEGG: K02607
GO: GO:0000808 GO:0005634 GO:0006260
PFAM: PF14630

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039595.01.T01	XP_003623975.1	87.591	411	25	3	252	639	124	531	0	688

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039595.01.T01	Q6EWX0	55.941	404	151	7	252	632	120	519	2.56E-144	433

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039595.01.T01	G7L4P5	87.591	411	25	3	252	639	124	531	0.0	688

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180001973.01	MsG0780039595.01	0.822438	2.368825e-53	1.982746e-50
MsG0280009899.01	MsG0780039595.01	0.816379	5.701105e-52	4.033229e-49
MsG0280011191.01	MsG0780039595.01	0.842670	2.244176e-58	3.427109e-55
MsG0480021134.01	MsG0780039595.01	0.813238	2.832563e-51	1.839568e-48
MsG0680030463.01	MsG0780039595.01	0.805343	1.397254e-49	7.374153e-47
MsG0780039595.01	MsG0780039706.01	0.853768	1.920513e-61	4.195321e-58
MsG0780039595.01	MsG0880046209.01	0.809885	1.516704e-50	9.010825e-48
MsG0780039595.01	MsG0880046226.01	0.800566	1.357033e-48	6.339207e-46

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PPI

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Gene1	Gene2	Type
MsG0480022784.01	MsG0780039595.01	PPI
MsG0780041359.01	MsG0780039595.01	PPI
MsG0880047172.01	MsG0780039595.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039595.01.T01	MTR_7g077840	87.591	411	25	3	252	639	124	531	0.0	688
MsG0780039595.01.T01	MTR_7g077860	81.625	283	21	1	1	252	1	283	8.95e-159	458
MsG0780039595.01.T01	MTR_7g077860	81.338	284	22	1	1	253	1	284	1.38e-158	459
MsG0780039595.01.T01	MTR_2g027720	78.879	232	38	2	1	221	1	232	6.22e-119	355

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039595.01.T01	AT4G29910	55.941	404	151	7	252	632	120	519	2.61e-145	433
MsG0780039595.01.T01	AT4G29910	55.941	404	151	7	252	632	150	549	1.86e-144	432
MsG0780039595.01.T01	AT2G45980	43.462	260	105	9	1	254	1	224	2.73e-49	173
MsG0780039595.01.T01	AT4G00355	43.922	255	110	9	6	252	3	232	1.57e-46	166
MsG0780039595.01.T01	AT4G00355	43.922	255	110	9	6	252	3	232	1.57e-46	166
MsG0780039595.01.T01	AT4G00355	43.922	255	110	9	6	252	3	232	1.57e-46	166
MsG0780039595.01.T01	AT4G00355	43.922	255	110	9	6	252	3	232	2.20e-46	165

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Find 122 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAGCATTGCAGAGAG+TGG	0.552781	7:+66453859	None:intergenic
AAACTTGACATTAGAAGGAT+TGG	0.407672	7:-66460927	MsG0780039595.01.T01:CDS
AAAGAAGGAAATGTTGGAAG+AGG	0.533397	7:-66454053	MsG0780039595.01.T01:CDS
AAAGAGCTTTACAACTTAAG+TGG	0.462236	7:-66460452	MsG0780039595.01.T01:CDS
AAATACATCATTCAAAGAGG+AGG	0.618743	7:+66454648	None:intergenic
AACAACCGAATCAGCAGAGC+AGG	0.534322	7:-66460685	MsG0780039595.01.T01:CDS
AACCCTTCAGATCTTCCTTG+CGG	0.630132	7:-66460600	MsG0780039595.01.T01:CDS
AACTCAACTTCACGTGGACC+AGG	0.507089	7:+66461166	None:intergenic
AAGAGTAGCAGGGTTTCTAG+AGG	0.622395	7:+66454471	None:intergenic
ACCGAGTTGAGCCTTCAATT+GGG	0.534244	7:+66453816	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACAACACAGAAATGTAAG+TGG	+	Chr7:66458417-66458436	None:intergenic	30.0%
AAACTTGACATTAGAAGGAT+TGG	-	Chr7:66454023-66454042	MsG0780039595.01.T01:CDS	30.0%
AAAGAGCTTTACAACTTAAG+TGG	-	Chr7:66454498-66454517	MsG0780039595.01.T01:CDS	30.0%
AAATACATCATTCAAAGAGG+AGG	+	Chr7:66460305-66460324	None:intergenic	30.0%
ACAGTAGTAATGCAAATTAG+TGG	+	Chr7:66459105-66459124	None:intergenic	30.0%
ACTAAGATACATGGATAAAG+AGG	-	Chr7:66459193-66459212	MsG0780039595.01.T01:intron	30.0%
AGAGATTTATGTGTCTGTAT+AGG	+	Chr7:66454953-66454972	None:intergenic	30.0%
AGATAGATATAGATAGATGG+GGG	-	Chr7:66456064-66456083	MsG0780039595.01.T01:intron	30.0%
AGTACTAAATATTAGTGAGG+CGG	+	Chr7:66456033-66456052	None:intergenic	30.0%
AGTGAGATTCAGAATGAATT+TGG	-	Chr7:66453934-66453953	MsG0780039595.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	66453694	66461278	66453694	ID=MsG0780039595.01;Name=MsG0780039595.01
Chr7	mRNA	66453694	66461278	66453694	ID=MsG0780039595.01.T01;Parent=MsG0780039595.01;Name=MsG0780039595.01.T01;_AED=0.33;_eAED=0.33;_QI=0\|0.2\|0\|1\|1\|1\|6\|0\|659
Chr7	exon	66460854	66461278	66460854	ID=MsG0780039595.01.T01:exon:10618;Parent=MsG0780039595.01.T01
Chr7	exon	66460431	66460761	66460431	ID=MsG0780039595.01.T01:exon:10617;Parent=MsG0780039595.01.T01
Chr7	exon	66455229	66455395	66455229	ID=MsG0780039595.01.T01:exon:10616;Parent=MsG0780039595.01.T01
Chr7	exon	66454932	66455164	66454932	ID=MsG0780039595.01.T01:exon:10615;Parent=MsG0780039595.01.T01
Chr7	exon	66454415	66454835	66454415	ID=MsG0780039595.01.T01:exon:10614;Parent=MsG0780039595.01.T01
Chr7	exon	66453694	66454096	66453694	ID=MsG0780039595.01.T01:exon:10613;Parent=MsG0780039595.01.T01
Chr7	CDS	66460854	66461278	66460854	ID=MsG0780039595.01.T01:cds;Parent=MsG0780039595.01.T01
Chr7	CDS	66460431	66460761	66460431	ID=MsG0780039595.01.T01:cds;Parent=MsG0780039595.01.T01
Chr7	CDS	66455229	66455395	66455229	ID=MsG0780039595.01.T01:cds;Parent=MsG0780039595.01.T01
Chr7	CDS	66454932	66455164	66454932	ID=MsG0780039595.01.T01:cds;Parent=MsG0780039595.01.T01
Chr7	CDS	66454415	66454835	66454415	ID=MsG0780039595.01.T01:cds;Parent=MsG0780039595.01.T01
Chr7	CDS	66453694	66454096	66453694	ID=MsG0780039595.01.T01:cds;Parent=MsG0780039595.01.T01

Gene Sequence

>MsG0780039595.01.T01

ATGGCAGGAACTGAAGATGAAGGGGAAAAGTCTTCTCGCGGTAATGACTGGGAGGTTGTATCTCTCACAGCATCAACTTATGCAGCTGCTCCTGGTCCACGTGAAGTTGAGTTGAAGGATGATGACAAGGAAGGTGCATATGCAACAAATGAAGCTGAAACATCAAACGCCTTATTCATGTCTGGTCACTTCGCCTTTCCACCAAGTAAGCATGAAAACTTGCCATTGGAAACTGACTATAGTGAGATTCAGAATGAATTTGGAGACAAAGATATCGCCTCTGTAGAGGCTCGTGAAGAAGCGACCAAGCCTAGTGGAAAGGATGAAGAAAACTTGACATTAGAAGGATTGGATGTGTCAAAGGAGTTTGAGGATATGAAATATTATGATGAGAAAATCAACAGATTATCTATTCATGGAAAACATGAAACAGACATTGCTGCTGTGACAGTATACGATGAAAACGTAGTTGAGTCTGTAACAACCGAATCAGCAGAGCAGGAGACAAAGGTATCTCCTGATGATTTATCACTGTCAAATAACTCTTCCAAAGATGACAAACAAAACCCTTCAGATCTTCCTTGCGGAGCTTGGTGGAAGCGAGGAGTTGCCTCCATCTATGCTCATGCAAAGGAGGCAAAAACATTATGGTCTGTTTTCATTGCAGCAACAGTGATGGGTTTGGTGATGCTTGGTCAACGCTGGCGACAGGAAAGAGCTTTACAACTTAAGTGGCAAGTCAGTATTTCTGATGAGTCTGTTCTGAATCAGTTGCTTCTCCATAGAAAAAATGCTGCCAATTCTTATGCGAATGTGAAGCGCTGTGAAAGACCGTCTGATTTTGTCAATTTTCTTCGCGAAGCATTGACCGGTGTTATAAATAATCTGAAGGAGAGATCAGAGAAGTTGATCCAAAAAAGAAGAGATTGGGATAAAAGCTCGACTATATTGCCCTTACTGTTTAATCTCTATGATATGTTAAAGATGCCCGAGGTTGGTCTGATTTTCATCAGCAGTACTTCACCAGATACCTTTTACACTAACATGGGTTATGTGGAGCCTATCCCCATTTACTTTCCTGATTACACAGAAGGTGATATTCGTCAAATCCTATTGAGGAACCAAGCAACCAGAAGTTGTATTCGTCATTTCTCGACTCTGAAGCCTTTCTGTAGAATTACTAGGCAGGTTGGCGAATTGTCTACTGCATTAAAGCCACTATTTGAAAAATATTGTGAACCTTTAAGTGATAAGGGAAAAGGAGTTGTCCCTAGTGAAGACATGAAGAGGAGGCTATTCAATCATATCAAGCCGCATATTGCCTCCTCTTTGAATGATGTATTTAAGGTTTCATCTGCTCCTTCGAGTGAAGTTGAAAACGGTAAAGAGACGAAGCATAAGGGGAATCTGAAGAGATTGGAGAGATCTGAGGAAATCGGTGATCTTGATTTTCACATGTCTACTAGTGCAAAGTATCTTCTTATTTCAGCATTTCTTGCCTCTAGAAACCCTGCTACTCTTGATGCATCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGAGGAAGGCCACTGAAAAAGCGCTGGAAAAGAAGGAAATGTTGGAAGAGGAACTACTAATGAAAGGACCTGGAACTTTTCCATTGGAGAGGTTGATAGCCATCTTTCAGTGCATTGTTTCTGTTGCAGAAGACCCAGCTGATGAAGATGAACAAAAGAATGAAGAACTAGGAGCTCAATGTGGCAGCGGTTCGCTGATGTCTGCCGTTCTTTTGCAGCTATCCACTCTCTGCAATGCTAATTTTATTTTTAAGGGAAAAAGCTGCCCAATTGAAGGCTCAACTCGGTATCGATCAACTATATCTGAAGACTTGGTCTTAAAGGTAACATCTTTGTCTCGCTCACTTAATACTCTCATAATTTTGTTGTTGTTTGTGTATTTGAAATTCAATGTTCGCGCACATGTGTAA

Protein sequence

>MsG0780039595.01.T01

MAGTEDEGEKSSRGNDWEVVSLTASTYAAAPGPREVELKDDDKEGAYATNEAETSNALFMSGHFAFPPSKHENLPLETDYSEIQNEFGDKDIASVEAREEATKPSGKDEENLTLEGLDVSKEFEDMKYYDEKINRLSIHGKHETDIAAVTVYDENVVESVTTESAEQETKVSPDDLSLSNNSSKDDKQNPSDLPCGAWWKRGVASIYAHAKEAKTLWSVFIAATVMGLVMLGQRWRQERALQLKWQVSISDESVLNQLLLHRKNAANSYANVKRCERPSDFVNFLREALTGVINNLKERSEKLIQKRRDWDKSSTILPLLFNLYDMLKMPEVGLIFISSTSPDTFYTNMGYVEPIPIYFPDYTEGDIRQILLRNQATRSCIRHFSTLKPFCRITRQVGELSTALKPLFEKYCEPLSDKGKGVVPSEDMKRRLFNHIKPHIASSLNDVFKVSSAPSSEVENGKETKHKGNLKRLERSEEIGDLDFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKATEKALEKKEMLEEELLMKGPGTFPLERLIAIFQCIVSVAEDPADEDEQKNEELGAQCGSGSLMSAVLLQLSTLCNANFIFKGKSCPIEGSTRYRSTISEDLVLKVTSLSRSLNTLIILLLFVYLKFNVRAHV*