Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002898.01.T01 | KEH16280.1 | 96.552 | 174 | 6 | 0 | 60 | 233 | 4 | 177 | 1.24E-120 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002898.01.T01 | A2YEZ6 | 60.355 | 169 | 64 | 2 | 68 | 233 | 3 | 171 | 1.20E-71 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002898.01.T01 | A0A072TRU8 | 96.552 | 174 | 6 | 0 | 60 | 233 | 4 | 177 | 5.94e-121 | 350 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002898.01 | MsG0280011457.01 | 0.817871 | 2.633327e-52 | 1.940634e-49 |
| MsG0180002898.01 | MsG0380016346.01 | 0.855612 | 5.612885e-62 | 1.303328e-58 |
| MsG0180002898.01 | MsG0380016573.01 | 0.845271 | 4.507514e-59 | 7.471812e-56 |
| MsG0180002898.01 | MsG0380016964.01 | 0.802920 | 4.461478e-49 | 2.212460e-46 |
| MsG0180002898.01 | MsG0480018355.01 | 0.834676 | 2.611450e-56 | 3.120936e-53 |
| MsG0180002898.01 | MsG0480019295.01 | 0.811026 | 8.600385e-51 | 5.266476e-48 |
| MsG0180002898.01 | MsG0480019890.01 | 0.831282 | 1.823598e-55 | 1.969626e-52 |
| MsG0180002898.01 | MsG0480020411.01 | 0.814476 | 1.511328e-51 | 1.015164e-48 |
| MsG0180002898.01 | MsG0780040645.01 | 0.848850 | 4.712039e-60 | 8.764073e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002898.01.T01 | MTR_0249s0070 | 96.552 | 174 | 6 | 0 | 60 | 233 | 4 | 177 | 1.51e-124 | 350 |
| MsG0180002898.01.T01 | MTR_0249s0070 | 96.450 | 169 | 6 | 0 | 65 | 233 | 1 | 169 | 2.89e-120 | 339 |
| MsG0180002898.01.T01 | MTR_7g092400 | 65.969 | 191 | 61 | 2 | 45 | 232 | 70 | 259 | 1.11e-88 | 263 |
| MsG0180002898.01.T01 | MTR_2g098160 | 58.235 | 170 | 67 | 2 | 68 | 233 | 3 | 172 | 2.09e-70 | 213 |
| MsG0180002898.01.T01 | MTR_4g065570 | 53.147 | 143 | 57 | 2 | 95 | 233 | 1 | 137 | 6.18e-49 | 157 |
| MsG0180002898.01.T01 | MTR_7g104320 | 46.429 | 168 | 85 | 3 | 69 | 233 | 3 | 168 | 1.35e-43 | 145 |
| MsG0180002898.01.T01 | MTR_4g053440 | 39.181 | 171 | 95 | 4 | 69 | 233 | 3 | 170 | 3.63e-36 | 125 |
| MsG0180002898.01.T01 | MTR_1g060380 | 40.854 | 164 | 86 | 3 | 69 | 232 | 3 | 155 | 1.10e-35 | 124 |
| MsG0180002898.01.T01 | MTR_2g086190 | 38.462 | 156 | 80 | 2 | 79 | 233 | 10 | 150 | 1.24e-34 | 121 |
| MsG0180002898.01.T01 | MTR_3g028010 | 38.037 | 163 | 84 | 2 | 70 | 232 | 17 | 162 | 2.65e-28 | 105 |
| MsG0180002898.01.T01 | MTR_8g036980 | 57.971 | 69 | 29 | 0 | 165 | 233 | 83 | 151 | 3.00e-26 | 99.8 |
| MsG0180002898.01.T01 | MTR_1g100773 | 34.416 | 154 | 84 | 4 | 78 | 231 | 2 | 138 | 5.21e-26 | 99.0 |
| MsG0180002898.01.T01 | MTR_7g114920 | 33.333 | 153 | 78 | 3 | 78 | 230 | 2 | 130 | 2.94e-25 | 96.7 |
| MsG0180002898.01.T01 | MTR_3g025570 | 84.444 | 45 | 7 | 0 | 167 | 211 | 3 | 47 | 1.49e-23 | 91.7 |
| MsG0180002898.01.T01 | MTR_2g054650 | 35.294 | 153 | 68 | 4 | 79 | 231 | 4 | 125 | 1.17e-22 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002898.01.T01 | AT1G51200 | 52.632 | 171 | 76 | 3 | 68 | 233 | 3 | 173 | 3.08e-51 | 164 |
| MsG0180002898.01.T01 | AT1G51200 | 52.632 | 171 | 76 | 3 | 68 | 233 | 3 | 173 | 3.08e-51 | 164 |
| MsG0180002898.01.T01 | AT1G51200 | 52.632 | 171 | 76 | 3 | 68 | 233 | 3 | 173 | 3.08e-51 | 164 |
| MsG0180002898.01.T01 | AT1G51200 | 52.632 | 171 | 76 | 3 | 68 | 233 | 3 | 173 | 3.08e-51 | 164 |
| MsG0180002898.01.T01 | AT2G36320 | 43.787 | 169 | 81 | 3 | 69 | 233 | 3 | 161 | 4.08e-42 | 140 |
| MsG0180002898.01.T01 | AT4G12040 | 41.718 | 163 | 90 | 3 | 76 | 233 | 13 | 175 | 6.37e-39 | 133 |
| MsG0180002898.01.T01 | AT4G12040 | 41.718 | 163 | 90 | 3 | 76 | 233 | 13 | 175 | 6.37e-39 | 133 |
| MsG0180002898.01.T01 | AT3G52800 | 43.452 | 168 | 92 | 2 | 69 | 233 | 3 | 170 | 1.08e-38 | 132 |
| MsG0180002898.01.T01 | AT3G52800 | 43.452 | 168 | 92 | 2 | 69 | 233 | 3 | 170 | 1.08e-38 | 132 |
| MsG0180002898.01.T01 | AT4G22820 | 40.936 | 171 | 97 | 2 | 66 | 233 | 7 | 176 | 1.68e-38 | 132 |
| MsG0180002898.01.T01 | AT4G22820 | 40.936 | 171 | 97 | 2 | 66 | 233 | 7 | 176 | 1.68e-38 | 132 |
| MsG0180002898.01.T01 | AT2G27580 | 39.610 | 154 | 92 | 1 | 79 | 232 | 10 | 162 | 2.94e-38 | 131 |
| MsG0180002898.01.T01 | AT2G27580 | 39.610 | 154 | 92 | 1 | 79 | 232 | 10 | 162 | 2.94e-38 | 131 |
| MsG0180002898.01.T01 | AT1G12440 | 40.000 | 165 | 85 | 3 | 75 | 233 | 12 | 168 | 1.20e-37 | 129 |
| MsG0180002898.01.T01 | AT1G12440 | 40.000 | 165 | 85 | 3 | 75 | 233 | 12 | 168 | 1.20e-37 | 129 |
| MsG0180002898.01.T01 | AT1G12440 | 40.000 | 165 | 85 | 3 | 75 | 233 | 12 | 168 | 1.20e-37 | 129 |
| MsG0180002898.01.T01 | AT3G12630 | 39.041 | 146 | 72 | 3 | 87 | 232 | 31 | 159 | 1.69e-29 | 108 |
| MsG0180002898.01.T01 | AT4G14225 | 38.816 | 152 | 59 | 3 | 79 | 230 | 5 | 122 | 7.21e-27 | 100 |
| MsG0180002898.01.T01 | AT4G25380 | 33.125 | 160 | 74 | 4 | 74 | 233 | 4 | 130 | 2.86e-24 | 94.0 |
Find 81 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCTTCTAGTGAGAATT+TGG | 0.150091 | 1:+52330229 | MsG0180002898.01.T01:CDS |
| GAATTCTTTGGATTATTTAT+TGG | 0.203106 | 1:+52330556 | MsG0180002898.01.T01:three_prime_UTR |
| GATATTGCCAGTTCAATATT+TGG | 0.203632 | 1:-52329682 | None:intergenic |
| ACAATTATTAACACAAAGTA+TGG | 0.213098 | 1:-52329997 | None:intergenic |
| AGCTTGTCGGCCTTAATTAC+AGG | 0.251778 | 1:-52330428 | None:intergenic |
| GTTAATAATTGTGGTTTCTT+TGG | 0.262711 | 1:+52330008 | MsG0180002898.01.T01:CDS |
| CGGAAGCGTGTTGGATTAAC+AGG | 0.266173 | 1:+52330293 | MsG0180002898.01.T01:CDS |
| CAACGTGTCTTTGTAACATT+TGG | 0.281770 | 1:-52330057 | None:intergenic |
| CGACAAGCTCGACAAATTCT+AGG | 0.299538 | 1:+52330442 | MsG0180002898.01.T01:CDS |
| AAAACCTGCATTGTTGCATT+AGG | 0.304907 | 1:+52330513 | MsG0180002898.01.T01:three_prime_UTR |
| GCTGGTTTGATGGAATTCTT+TGG | 0.307834 | 1:+52330544 | MsG0180002898.01.T01:three_prime_UTR |
| AGTTGAACCGTCACTCTCTA+TGG | 0.310176 | 1:-52329770 | None:intergenic |
| GTGTTTGTGTTGGGACTTCC+TGG | 0.310772 | 1:+52329631 | MsG0180002898.01.T01:CDS |
| TAAATCCAACCCTGTAATTA+AGG | 0.315826 | 1:+52330418 | MsG0180002898.01.T01:CDS |
| ACACAAAGTATGGGCAGTTC+TGG | 0.323522 | 1:-52329987 | None:intergenic |
| ACGGTCGGCGCTGAGACTTC+TGG | 0.330553 | 1:+52330203 | MsG0180002898.01.T01:CDS |
| CTGCTTTAAACCGTTCGAAC+CGG | 0.331954 | 1:+52329723 | MsG0180002898.01.T01:CDS |
| AAACCTGCATTGTTGCATTA+GGG | 0.335808 | 1:+52330514 | MsG0180002898.01.T01:three_prime_UTR |
| TTAATAATTGTGGTTTCTTT+GGG | 0.337573 | 1:+52330009 | MsG0180002898.01.T01:CDS |
| TTTCTCTACTCATTCCATAA+TGG | 0.347377 | 1:+52330593 | MsG0180002898.01.T01:three_prime_UTR |
| CTAAGCAGTAAATTCCATTA+TGG | 0.352615 | 1:-52330607 | None:intergenic |
| TGCAGGTGATCATAAAATAA+TGG | 0.367777 | 1:+52329935 | MsG0180002898.01.T01:intron |
| TGCTTTAAACCGTTCGAACC+GGG | 0.372187 | 1:+52329724 | MsG0180002898.01.T01:CDS |
| CTAGAATTTGTCGAGCTTGT+CGG | 0.379885 | 1:-52330441 | None:intergenic |
| CAAGCAGATGTGCTACTTGC+CGG | 0.383181 | 1:+52330273 | MsG0180002898.01.T01:CDS |
| AACCGTCACTCTCTATGGTT+TGG | 0.396070 | 1:-52329765 | None:intergenic |
| CTGTTAATCCAACACGCTTC+CGG | 0.405147 | 1:-52330292 | None:intergenic |
| TGATAAAATGTCTTGATAGA+AGG | 0.423102 | 1:+52330477 | MsG0180002898.01.T01:three_prime_UTR |
| ATGGATTCTCATGACGAAAC+AGG | 0.424108 | 1:+52329954 | MsG0180002898.01.T01:CDS |
| CACGTTGTTGATGCAGGAAC+AGG | 0.431793 | 1:+52330073 | MsG0180002898.01.T01:CDS |
| CCAACAGATTGGTAATCAAA+AGG | 0.434815 | 1:-52330380 | None:intergenic |
| ACATTTGGAACACATATTCA+TGG | 0.438459 | 1:-52330042 | None:intergenic |
| TTTGTTTGTGTAGATGTGTC+CGG | 0.446461 | 1:+52329602 | None:intergenic |
| GTATGGGCAGTTCTGGAGTC+TGG | 0.447308 | 1:-52329980 | None:intergenic |
| AGCTGAACCAAATATTGAAC+TGG | 0.453272 | 1:+52329675 | MsG0180002898.01.T01:CDS |
| CGGGTGTCGGTGTTTGTGTT+GGG | 0.457083 | 1:+52329622 | MsG0180002898.01.T01:CDS |
| CCGGGTGTCGGTGTTTGTGT+TGG | 0.457131 | 1:+52329621 | MsG0180002898.01.T01:CDS |
| CAGTTCAACCCCGGTTCGAA+CGG | 0.466829 | 1:-52329733 | None:intergenic |
| ATAGAGAGTGACGGTTCAAC+TGG | 0.473081 | 1:+52329772 | MsG0180002898.01.T01:CDS |
| TTGATTACCAATCTGTTGGC+CGG | 0.475767 | 1:+52330384 | MsG0180002898.01.T01:CDS |
| ATACTTTGTGTTAATAATTG+TGG | 0.479765 | 1:+52329999 | MsG0180002898.01.T01:CDS |
| GTCGGCCTTAATTACAGGGT+TGG | 0.480712 | 1:-52330423 | None:intergenic |
| ATAATTGTGGTTTCTTTGGG+AGG | 0.481848 | 1:+52330012 | MsG0180002898.01.T01:CDS |
| GAGTGGCGGTTCTATGAAAC+AGG | 0.489412 | 1:+52330130 | MsG0180002898.01.T01:CDS |
| CAAAGACACGTTGTTGATGC+AGG | 0.494782 | 1:+52330067 | MsG0180002898.01.T01:CDS |
| TAATTGTGGTTTCTTTGGGA+GGG | 0.498014 | 1:+52330013 | MsG0180002898.01.T01:CDS |
| TCGAAGAAACACAGATATGC+TGG | 0.498118 | 1:+52330714 | MsG0180002898.01.T01:three_prime_UTR |
| CAACAGATTGGTAATCAAAA+GGG | 0.499682 | 1:-52330379 | None:intergenic |
| TAGCATCCCGGCCAACAGAT+TGG | 0.501461 | 1:-52330391 | None:intergenic |
| GTTGGGACTTCCTGGTGTCA+TGG | 0.503435 | 1:+52329639 | MsG0180002898.01.T01:CDS |
| CGGCAAGTAGCACATCTGCT+TGG | 0.514569 | 1:-52330272 | None:intergenic |
| GGTAGCATCAGTTGAAAACT+TGG | 0.516386 | 1:+52330106 | MsG0180002898.01.T01:CDS |
| ACAGGTTTCACCTGCAAATG+TGG | 0.520180 | 1:+52330311 | MsG0180002898.01.T01:CDS |
| TGATTACCAATCTGTTGGCC+GGG | 0.529241 | 1:+52330385 | MsG0180002898.01.T01:CDS |
| GTGTAGATGTGTCCGGGTGT+CGG | 0.531958 | 1:+52329609 | None:intergenic |
| ATTGAACTGGCAATATCTCT+AGG | 0.532666 | 1:+52329688 | MsG0180002898.01.T01:CDS |
| AAAACATTGGCCATGACACC+AGG | 0.534705 | 1:-52329649 | None:intergenic |
| TGGTTCAGCTTTCAAAACAT+TGG | 0.544254 | 1:-52329662 | None:intergenic |
| GCTTTAAACCGTTCGAACCG+GGG | 0.545976 | 1:+52329725 | MsG0180002898.01.T01:CDS |
| AACCTGCATTGTTGCATTAG+GGG | 0.547011 | 1:+52330515 | MsG0180002898.01.T01:three_prime_UTR |
| TGGATTTAGCAATAGCATCC+CGG | 0.551485 | 1:-52330403 | None:intergenic |
| AACCCCTAATGCAACAATGC+AGG | 0.560391 | 1:-52330517 | None:intergenic |
| TTGTTTGTGTAGATGTGTCC+GGG | 0.560704 | 1:+52329603 | None:intergenic |
| GCTTGTCGGCCTTAATTACA+GGG | 0.564803 | 1:-52330427 | None:intergenic |
| CCAACACAAACACCGACACC+CGG | 0.585963 | 1:-52329621 | None:intergenic |
| CTGGCAATATCTCTAGGTCA+TGG | 0.588811 | 1:+52329694 | MsG0180002898.01.T01:CDS |
| TTGGAGACAACAGTAAAGAC+AGG | 0.590721 | 1:+52330248 | MsG0180002898.01.T01:CDS |
| GACAAGCTCGACAAATTCTA+GGG | 0.595173 | 1:+52330443 | MsG0180002898.01.T01:CDS |
| GCTACTTGCCGGAAGCGTGT+TGG | 0.602030 | 1:+52330284 | MsG0180002898.01.T01:CDS |
| GTTGAAAACTTGGTGAGTGG+CGG | 0.602528 | 1:+52330116 | MsG0180002898.01.T01:CDS |
| TTATTTATGATAATGCTCAA+AGG | 0.612713 | 1:+52330664 | MsG0180002898.01.T01:three_prime_UTR |
| ATGAAACAGGTTGTGACTGA+TGG | 0.615172 | 1:+52330143 | MsG0180002898.01.T01:CDS |
| AATGTGAAGGTCAAGACGGT+CGG | 0.624988 | 1:+52330188 | MsG0180002898.01.T01:CDS |
| TTGTTTGAACAGTTCAACCC+CGG | 0.628799 | 1:-52329742 | None:intergenic |
| CGTGCAAATTGAGAATGTGA+AGG | 0.633264 | 1:+52330175 | MsG0180002898.01.T01:CDS |
| TGAGAATGTGAAGGTCAAGA+CGG | 0.643009 | 1:+52330184 | MsG0180002898.01.T01:CDS |
| TCAGTTGAAAACTTGGTGAG+TGG | 0.643367 | 1:+52330113 | MsG0180002898.01.T01:CDS |
| AATCATGCTTGTCAGAATAG+CGG | 0.658352 | 1:-52330355 | None:intergenic |
| CAATTATTAACACAAAGTAT+GGG | 0.662984 | 1:-52329996 | None:intergenic |
| AACCAAACCATAGAGAGTGA+CGG | 0.676191 | 1:+52329763 | MsG0180002898.01.T01:CDS |
| GCAGGAACAGGAAAAGCTAG+CGG | 0.718652 | 1:+52330085 | MsG0180002898.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTATTAACACAAAGTA+TGG | - | Chr1:52330000-52330019 | None:intergenic | 20.0% |
| !! | ATACTTTGTGTTAATAATTG+TGG | + | Chr1:52329999-52330018 | MsG0180002898.01.T01:CDS | 20.0% |
| !! | CAATTATTAACACAAAGTAT+GGG | - | Chr1:52329999-52330018 | None:intergenic | 20.0% |
| !! | GAATTCTTTGGATTATTTAT+TGG | + | Chr1:52330556-52330575 | MsG0180002898.01.T01:three_prime_UTR | 20.0% |
| !! | TTAATAATTGTGGTTTCTTT+GGG | + | Chr1:52330009-52330028 | MsG0180002898.01.T01:CDS | 20.0% |
| !!! | TTATTTATGATAATGCTCAA+AGG | + | Chr1:52330664-52330683 | MsG0180002898.01.T01:three_prime_UTR | 20.0% |
| ! | CAATGTCTTAAAATCCAAAT+CGG | - | Chr1:52329807-52329826 | None:intergenic | 25.0% |
| ! | GTTAATAATTGTGGTTTCTT+TGG | + | Chr1:52330008-52330027 | MsG0180002898.01.T01:CDS | 25.0% |
| ! | TGATAAAATGTCTTGATAGA+AGG | + | Chr1:52330477-52330496 | MsG0180002898.01.T01:three_prime_UTR | 25.0% |
| CACATTTAAGTGCAATTTGT+CGG | + | Chr1:52329834-52329853 | MsG0180002898.01.T01:intron | 30.0% | |
| CTAAGCAGTAAATTCCATTA+TGG | - | Chr1:52330610-52330629 | None:intergenic | 30.0% | |
| GATATTGCCAGTTCAATATT+TGG | - | Chr1:52329685-52329704 | None:intergenic | 30.0% | |
| TAAATCCAACCCTGTAATTA+AGG | + | Chr1:52330418-52330437 | MsG0180002898.01.T01:CDS | 30.0% | |
| TGCAGGTGATCATAAAATAA+TGG | + | Chr1:52329935-52329954 | MsG0180002898.01.T01:intron | 30.0% | |
| TTCATCTTCTAGTGAGAATT+TGG | + | Chr1:52330229-52330248 | MsG0180002898.01.T01:CDS | 30.0% | |
| TTTCTCTACTCATTCCATAA+TGG | + | Chr1:52330593-52330612 | MsG0180002898.01.T01:three_prime_UTR | 30.0% | |
| ! | ACATTTGGAACACATATTCA+TGG | - | Chr1:52330045-52330064 | None:intergenic | 30.0% |
| ! | CAACAGATTGGTAATCAAAA+GGG | - | Chr1:52330382-52330401 | None:intergenic | 30.0% |
| !!! | CGATTTGGATTTTAAGACAT+TGG | + | Chr1:52329805-52329824 | MsG0180002898.01.T01:intron | 30.0% |
| AAAAAGGTTTCCACATTTGC+AGG | - | Chr1:52330324-52330343 | None:intergenic | 35.0% | |
| AAAACCTGCATTGTTGCATT+AGG | + | Chr1:52330513-52330532 | MsG0180002898.01.T01:three_prime_UTR | 35.0% | |
| AAACCTGCATTGTTGCATTA+GGG | + | Chr1:52330514-52330533 | MsG0180002898.01.T01:three_prime_UTR | 35.0% | |
| AATCATGCTTGTCAGAATAG+CGG | - | Chr1:52330358-52330377 | None:intergenic | 35.0% | |
| AGCTGAACCAAATATTGAAC+TGG | + | Chr1:52329675-52329694 | MsG0180002898.01.T01:CDS | 35.0% | |
| ATAATTGTGGTTTCTTTGGG+AGG | + | Chr1:52330012-52330031 | MsG0180002898.01.T01:CDS | 35.0% | |
| ATTGAACTGGCAATATCTCT+AGG | + | Chr1:52329688-52329707 | MsG0180002898.01.T01:CDS | 35.0% | |
| CAACGTGTCTTTGTAACATT+TGG | - | Chr1:52330060-52330079 | None:intergenic | 35.0% | |
| TGGTTCAGCTTTCAAAACAT+TGG | - | Chr1:52329665-52329684 | None:intergenic | 35.0% | |
| ! | CCAACAGATTGGTAATCAAA+AGG | - | Chr1:52330383-52330402 | None:intergenic | 35.0% |
| ! | TAATTGTGGTTTCTTTGGGA+GGG | + | Chr1:52330013-52330032 | MsG0180002898.01.T01:CDS | 35.0% |
| !! | CCTTTTGATTACCAATCTGT+TGG | + | Chr1:52330380-52330399 | MsG0180002898.01.T01:CDS | 35.0% |
| !!! | GGATTTTAAGACATTGGTCA+TGG | + | Chr1:52329811-52329830 | MsG0180002898.01.T01:intron | 35.0% |
| AACCAAACCATAGAGAGTGA+CGG | + | Chr1:52329763-52329782 | MsG0180002898.01.T01:CDS | 40.0% | |
| AACCTGCATTGTTGCATTAG+GGG | + | Chr1:52330515-52330534 | MsG0180002898.01.T01:three_prime_UTR | 40.0% | |
| ATGAAACAGGTTGTGACTGA+TGG | + | Chr1:52330143-52330162 | MsG0180002898.01.T01:CDS | 40.0% | |
| ATGGATTCTCATGACGAAAC+AGG | + | Chr1:52329954-52329973 | MsG0180002898.01.T01:CDS | 40.0% | |
| CGTGCAAATTGAGAATGTGA+AGG | + | Chr1:52330175-52330194 | MsG0180002898.01.T01:CDS | 40.0% | |
| CTAGAATTTGTCGAGCTTGT+CGG | - | Chr1:52330444-52330463 | None:intergenic | 40.0% | |
| GACAAGCTCGACAAATTCTA+GGG | + | Chr1:52330443-52330462 | MsG0180002898.01.T01:CDS | 40.0% | |
| GCTGTTCTATTTATGCTTGC+AGG | + | Chr1:52329918-52329937 | MsG0180002898.01.T01:intron | 40.0% | |
| GGTAGCATCAGTTGAAAACT+TGG | + | Chr1:52330106-52330125 | MsG0180002898.01.T01:CDS | 40.0% | |
| TCGAAGAAACACAGATATGC+TGG | + | Chr1:52330714-52330733 | MsG0180002898.01.T01:three_prime_UTR | 40.0% | |
| TGAGAATGTGAAGGTCAAGA+CGG | + | Chr1:52330184-52330203 | MsG0180002898.01.T01:CDS | 40.0% | |
| TGGATTTAGCAATAGCATCC+CGG | - | Chr1:52330406-52330425 | None:intergenic | 40.0% | |
| TTGATTACCAATCTGTTGGC+CGG | + | Chr1:52330384-52330403 | MsG0180002898.01.T01:CDS | 40.0% | |
| TTGGAGACAACAGTAAAGAC+AGG | + | Chr1:52330248-52330267 | MsG0180002898.01.T01:CDS | 40.0% | |
| TTGTTTGAACAGTTCAACCC+CGG | - | Chr1:52329745-52329764 | None:intergenic | 40.0% | |
| ! | GCGTTTGTATTTTCCAGTGA+GGG | + | Chr1:52329892-52329911 | MsG0180002898.01.T01:intron | 40.0% |
| ! | TCAGTTGAAAACTTGGTGAG+TGG | + | Chr1:52330113-52330132 | MsG0180002898.01.T01:CDS | 40.0% |
| ! | TGCGTTTGTATTTTCCAGTG+AGG | + | Chr1:52329891-52329910 | MsG0180002898.01.T01:intron | 40.0% |
| !! | GCTGGTTTGATGGAATTCTT+TGG | + | Chr1:52330544-52330563 | MsG0180002898.01.T01:three_prime_UTR | 40.0% |
| AAAACATTGGCCATGACACC+AGG | - | Chr1:52329652-52329671 | None:intergenic | 45.0% | |
| AACCCCTAATGCAACAATGC+AGG | - | Chr1:52330520-52330539 | None:intergenic | 45.0% | |
| AACCGTCACTCTCTATGGTT+TGG | - | Chr1:52329768-52329787 | None:intergenic | 45.0% | |
| AATGTGAAGGTCAAGACGGT+CGG | + | Chr1:52330188-52330207 | MsG0180002898.01.T01:CDS | 45.0% | |
| ACACAAAGTATGGGCAGTTC+TGG | - | Chr1:52329990-52330009 | None:intergenic | 45.0% | |
| ACAGGTTTCACCTGCAAATG+TGG | + | Chr1:52330311-52330330 | MsG0180002898.01.T01:CDS | 45.0% | |
| ACTGGTTGGATTGTCCGATT+TGG | + | Chr1:52329790-52329809 | MsG0180002898.01.T01:intron | 45.0% | |
| AGCGGTGCATTGCACAAAAA+AGG | - | Chr1:52330340-52330359 | None:intergenic | 45.0% | |
| AGCTTGTCGGCCTTAATTAC+AGG | - | Chr1:52330431-52330450 | None:intergenic | 45.0% | |
| AGTTGAACCGTCACTCTCTA+TGG | - | Chr1:52329773-52329792 | None:intergenic | 45.0% | |
| ATAGAGAGTGACGGTTCAAC+TGG | + | Chr1:52329772-52329791 | MsG0180002898.01.T01:CDS | 45.0% | |
| CAAAGACACGTTGTTGATGC+AGG | + | Chr1:52330067-52330086 | MsG0180002898.01.T01:CDS | 45.0% | |
| CGACAAGCTCGACAAATTCT+AGG | + | Chr1:52330442-52330461 | MsG0180002898.01.T01:CDS | 45.0% | |
| CTGGCAATATCTCTAGGTCA+TGG | + | Chr1:52329694-52329713 | MsG0180002898.01.T01:CDS | 45.0% | |
| CTGTTAATCCAACACGCTTC+CGG | - | Chr1:52330295-52330314 | None:intergenic | 45.0% | |
| GCTTGTCGGCCTTAATTACA+GGG | - | Chr1:52330430-52330449 | None:intergenic | 45.0% | |
| TGATTACCAATCTGTTGGCC+GGG | + | Chr1:52330385-52330404 | MsG0180002898.01.T01:CDS | 45.0% | |
| ! | CTGCTTTAAACCGTTCGAAC+CGG | + | Chr1:52329723-52329742 | MsG0180002898.01.T01:CDS | 45.0% |
| ! | GTTGAAAACTTGGTGAGTGG+CGG | + | Chr1:52330116-52330135 | MsG0180002898.01.T01:CDS | 45.0% |
| ! | TGCTTTAAACCGTTCGAACC+GGG | + | Chr1:52329724-52329743 | MsG0180002898.01.T01:CDS | 45.0% |
| !! | TTGCATTAGGGGTTTTGTGC+TGG | + | Chr1:52330526-52330545 | MsG0180002898.01.T01:three_prime_UTR | 45.0% |
| AGAGTGACGGTTCAACTGGT+TGG | + | Chr1:52329776-52329795 | MsG0180002898.01.T01:intron | 50.0% | |
| ATAGAACAGCTCACCCTCAC+TGG | - | Chr1:52329908-52329927 | None:intergenic | 50.0% | |
| CACGTTGTTGATGCAGGAAC+AGG | + | Chr1:52330073-52330092 | MsG0180002898.01.T01:CDS | 50.0% | |
| GAGTGGCGGTTCTATGAAAC+AGG | + | Chr1:52330130-52330149 | MsG0180002898.01.T01:CDS | 50.0% | |
| GCAGGAACAGGAAAAGCTAG+CGG | + | Chr1:52330085-52330104 | MsG0180002898.01.T01:CDS | 50.0% | |
| GTCGGCCTTAATTACAGGGT+TGG | - | Chr1:52330426-52330445 | None:intergenic | 50.0% | |
| GTGTTTGTGTTGGGACTTCC+TGG | + | Chr1:52329631-52329650 | MsG0180002898.01.T01:CDS | 50.0% | |
| ! | CGGAAGCGTGTTGGATTAAC+AGG | + | Chr1:52330293-52330312 | MsG0180002898.01.T01:CDS | 50.0% |
| ! | GCTTTAAACCGTTCGAACCG+GGG | + | Chr1:52329725-52329744 | MsG0180002898.01.T01:CDS | 50.0% |
| !! | CAAGCAGATGTGCTACTTGC+CGG | + | Chr1:52330273-52330292 | MsG0180002898.01.T01:CDS | 50.0% |
| !!! | GGGGTTTTGTGCTGGTTTGA+TGG | + | Chr1:52330534-52330553 | MsG0180002898.01.T01:three_prime_UTR | 50.0% |
| CCAACACAAACACCGACACC+CGG | - | Chr1:52329624-52329643 | None:intergenic | 55.0% | |
| CGGCAAGTAGCACATCTGCT+TGG | - | Chr1:52330275-52330294 | None:intergenic | 55.0% | |
| TAGCATCCCGGCCAACAGAT+TGG | - | Chr1:52330394-52330413 | None:intergenic | 55.0% | |
| ! | CAGTTCAACCCCGGTTCGAA+CGG | - | Chr1:52329736-52329755 | None:intergenic | 55.0% |
| ! | GTTGGGACTTCCTGGTGTCA+TGG | + | Chr1:52329639-52329658 | MsG0180002898.01.T01:CDS | 55.0% |
| !! | CGGGTGTCGGTGTTTGTGTT+GGG | + | Chr1:52329622-52329641 | MsG0180002898.01.T01:CDS | 55.0% |
| !! | GTATGGGCAGTTCTGGAGTC+TGG | - | Chr1:52329983-52330002 | None:intergenic | 55.0% |
| ! | GCTACTTGCCGGAAGCGTGT+TGG | + | Chr1:52330284-52330303 | MsG0180002898.01.T01:CDS | 60.0% |
| !! | CCGGGTGTCGGTGTTTGTGT+TGG | + | Chr1:52329621-52329640 | MsG0180002898.01.T01:CDS | 60.0% |
| ! | ACGGTCGGCGCTGAGACTTC+TGG | + | Chr1:52330203-52330222 | MsG0180002898.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 52329616 | 52330747 | 52329616 | ID=MsG0180002898.01;Name=MsG0180002898.01 |
| Chr1 | mRNA | 52329616 | 52330747 | 52329616 | ID=MsG0180002898.01.T01;Parent=MsG0180002898.01;Name=MsG0180002898.01.T01;_AED=0.49;_eAED=0.58;_QI=0|0|0.5|1|1|0.5|2|284|233 |
| Chr1 | exon | 52329616 | 52329793 | 52329616 | ID=MsG0180002898.01.T01:exon:22048;Parent=MsG0180002898.01.T01 |
| Chr1 | exon | 52329940 | 52330747 | 52329940 | ID=MsG0180002898.01.T01:exon:22049;Parent=MsG0180002898.01.T01 |
| Chr1 | CDS | 52329616 | 52329793 | 52329616 | ID=MsG0180002898.01.T01:cds;Parent=MsG0180002898.01.T01 |
| Chr1 | CDS | 52329940 | 52330463 | 52329940 | ID=MsG0180002898.01.T01:cds;Parent=MsG0180002898.01.T01 |
| Chr1 | three_prime_UTR | 52330464 | 52330747 | 52330464 | ID=MsG0180002898.01.T01:three_prime_utr;Parent=MsG0180002898.01.T01 |
| Gene Sequence |
| Protein sequence |
