AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019890.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019890.01.T01 MTR_0003s0470 62.170 341 9 3 1 221 75 415 3.19e-128 368
MsG0480019890.01.T01 MTR_3g462280 52.941 340 40 4 2 221 84 423 1.20e-105 311
MsG0480019890.01.T01 MTR_4g114710 30.887 327 94 6 17 221 82 398 5.04e-37 133
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019890.01.T01 AT1G70330 41.159 345 78 7 1 221 107 450 2.99e-68 216
MsG0480019890.01.T01 AT1G02630 30.931 333 98 7 8 221 70 389 4.02e-39 139
MsG0480019890.01.T01 AT1G02630 31.633 294 103 9 8 221 70 345 1.04e-29 113

Find 47 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTATTATTGCTTGGTTT+TGG 0.145627 4:+29057448 MsG0480019890.01.T01:CDS
AATCTCTGTCCGGAAGATTT+TGG 0.225162 4:-29057274 None:intergenic
TACATGCTCGTTGGTCTCTT+TGG 0.274505 4:+29055020 None:intergenic
CTCGGCATGCTGTAACTTTA+CGG 0.281643 4:-29057376 None:intergenic
CACACTACTGACTTGTCTCT+TGG 0.337270 4:+29057302 MsG0480019890.01.T01:CDS
TTCATCGTAGTACTTCATAA+TGG 0.339715 4:-29056904 None:intergenic
TGTCCACTCTCAACTTCTTA+AGG 0.353007 4:+29057094 MsG0480019890.01.T01:CDS
ATAAATCTCATGCTTATGTT+AGG 0.364457 4:+29055069 MsG0480019890.01.T01:CDS
GTCCTTTGACTGGATCTGTT+TGG 0.367452 4:+29056964 MsG0480019890.01.T01:CDS
ACACTACTGACTTGTCTCTT+GGG 0.369638 4:+29057303 MsG0480019890.01.T01:CDS
GGTTCTATTGTTGGATCTGC+TGG 0.374532 4:+29055244 MsG0480019890.01.T01:CDS
CTTCTGGTTCTATTATTGCT+TGG 0.384734 4:+29057442 MsG0480019890.01.T01:CDS
CTACGATGAACTAAAGATTC+AGG 0.394767 4:+29056917 MsG0480019890.01.T01:CDS
GTGACACTCGCAATATTTCC+AGG 0.397334 4:+29057056 MsG0480019890.01.T01:CDS
TGCTTATGTTAGGATTAACT+TGG 0.399833 4:+29055079 MsG0480019890.01.T01:CDS
ATTGCTGGCACTGCTGCTTC+TGG 0.415429 4:+29055298 MsG0480019890.01.T01:CDS
TATATGCAAGCTGTCATTGC+TGG 0.420137 4:+29055283 MsG0480019890.01.T01:CDS
TTGGTGCAGGGTTCTATTGT+TGG 0.427009 4:+29055235 MsG0480019890.01.T01:intron
TCATCGTAGTACTTCATAAT+GGG 0.429570 4:-29056903 None:intergenic
TGTCTCTTGGGGCTTACAAA+TGG 0.431350 4:+29057315 MsG0480019890.01.T01:CDS
TTACAGCATGCCGAGACTGC+TGG 0.461987 4:+29057384 MsG0480019890.01.T01:CDS
ACTCTCAACTTCTTAAGGAT+TGG 0.473670 4:+29057099 MsG0480019890.01.T01:CDS
AGACAAGTCAGTAGTGTGAC+AGG 0.479591 4:-29057297 None:intergenic
GTTGGAACAATTAAGTGGTA+TGG 0.499056 4:+29057008 MsG0480019890.01.T01:CDS
CTACACGGTCCAAAATCTTC+CGG 0.502823 4:+29057265 MsG0480019890.01.T01:CDS
TACAGCATGCCGAGACTGCT+GGG 0.509187 4:+29057385 MsG0480019890.01.T01:CDS
GCTGTTGTTTACATGCTCGT+TGG 0.512487 4:+29055011 None:intergenic
CACTACTGACTTGTCTCTTG+GGG 0.522654 4:+29057304 MsG0480019890.01.T01:CDS
AAATCATCAATACGCTGGTA+AGG 0.526554 4:-29057341 None:intergenic
ACAGCTTGCATATACCTCTC+AGG 0.532551 4:-29055274 None:intergenic
GACGACAACAGTCCTTTGAC+TGG 0.532845 4:+29056954 MsG0480019890.01.T01:CDS
ACATCCTCTGTAATGTAACC+TGG 0.566880 4:-29057074 None:intergenic
CTCTTCTTAGGATGCCTACA+CGG 0.571460 4:+29057250 MsG0480019890.01.T01:intron
GTGTGACAGGAATCTCTGTC+CGG 0.573239 4:-29057284 None:intergenic
GCTTATGTTAGGATTAACTT+GGG 0.574619 4:+29055080 MsG0480019890.01.T01:CDS
AGCTAAAATCATCAATACGC+TGG 0.577988 4:-29057346 None:intergenic
ATACCACTTAATTGTTCCAA+CGG 0.579389 4:-29057006 None:intergenic
CTGCTGGTGAGTTGCCTGAG+AGG 0.582234 4:+29055260 MsG0480019890.01.T01:CDS
ACTCACAATCCCAGCAGTCT+CGG 0.585402 4:-29057394 None:intergenic
CTCCAAACAGATCCAGTCAA+AGG 0.607721 4:-29056966 None:intergenic
ATACCGTTGGAACAATTAAG+TGG 0.609266 4:+29057003 MsG0480019890.01.T01:CDS
TCAACTGTGTGGGATACCGT+TGG 0.617097 4:+29056990 MsG0480019890.01.T01:CDS
ATTTCCAGGTTACATTACAG+AGG 0.630377 4:+29057070 MsG0480019890.01.T01:CDS
AAAGATTCAGGCAGTCGCTG+TGG 0.644804 4:+29056929 MsG0480019890.01.T01:CDS
AATCCTTAAGAAGTTGAGAG+TGG 0.645129 4:-29057097 None:intergenic
CTGTTTGGAGATCAACTGTG+TGG 0.688119 4:+29056979 MsG0480019890.01.T01:CDS
TGTTTGGAGATCAACTGTGT+GGG 0.723698 4:+29056980 MsG0480019890.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTAAAATTATTATA+CGG + Chr4:29056105-29056124 MsG0480019890.01.T01:intron 0.0%
!! AAAAAAAAAAAAAACCAAAA+TGG - Chr4:29055929-29055948 None:intergenic 10.0%
!!! TTTTTTATTGAAATTTGAAA+AGG + Chr4:29056689-29056708 MsG0480019890.01.T01:intron 10.0%
!!! CTTTTATTGTTATTGTTATA+AGG + Chr4:29056430-29056449 MsG0480019890.01.T01:intron 15.0%
!! AAACAAAACATGATATTAGA+TGG - Chr4:29056570-29056589 None:intergenic 20.0%
!! AAACATTAAAGCAAGTAATA+AGG - Chr4:29057136-29057155 None:intergenic 20.0%
!! AACATAAAAACATCAATCAA+AGG - Chr4:29055140-29055159 None:intergenic 20.0%
!! AAGATAGATGAAATTAGTTA+AGG + Chr4:29055681-29055700 MsG0480019890.01.T01:intron 20.0%
!! AATGTGATATATTCAATAAC+TGG + Chr4:29056075-29056094 MsG0480019890.01.T01:intron 20.0%
!! TAACAATAAAAGAAATGTGT+AGG - Chr4:29056422-29056441 None:intergenic 20.0%
!! TTAAATGGAAATAATGTGTA+AGG + Chr4:29056637-29056656 MsG0480019890.01.T01:intron 20.0%
!! TTGAAATTTGAAAAGGTAAA+TGG + Chr4:29056696-29056715 MsG0480019890.01.T01:intron 20.0%
!! TTGATATCATTATAGATTGA+AGG + Chr4:29056014-29056033 MsG0480019890.01.T01:intron 20.0%
!!! CAAATATCTGATTTTATTCT+AGG - Chr4:29056313-29056332 None:intergenic 20.0%
!!! GATTGATGTTTTTATGTTAA+GGG + Chr4:29055142-29055161 MsG0480019890.01.T01:CDS 20.0%
!!! TAACTTGATTTAGGTTTAAA+TGG + Chr4:29056622-29056641 MsG0480019890.01.T01:intron 20.0%
!!! TATTTGAGTTTATTTGTTGT+TGG + Chr4:29055350-29055369 MsG0480019890.01.T01:intron 20.0%
!!! TGATTGATGTTTTTATGTTA+AGG + Chr4:29055141-29055160 MsG0480019890.01.T01:CDS 20.0%
! AAAAAAAACCAAAATGGTGT+CGG - Chr4:29055923-29055942 None:intergenic 25.0%
! ATAAATCTCATGCTTATGTT+AGG + Chr4:29055069-29055088 MsG0480019890.01.T01:CDS 25.0%
! CAAAATAGTAACAAAGTTGA+GGG - Chr4:29055793-29055812 None:intergenic 25.0%
! CATATATATGATGTGAGAAT+GGG + Chr4:29056188-29056207 MsG0480019890.01.T01:intron 25.0%
! CTAATATATAGACAATGTTG+TGG - Chr4:29055563-29055582 None:intergenic 25.0%
! CTCAAATAGTAACAAAGTTA+TGG - Chr4:29055338-29055357 None:intergenic 25.0%
! CTTTGTAGTTAGTATTACTT+GGG + Chr4:29056377-29056396 MsG0480019890.01.T01:intron 25.0%
! TCAAAATAGTAACAAAGTTG+AGG - Chr4:29055794-29055813 None:intergenic 25.0%
! TCATATATATGATGTGAGAA+TGG + Chr4:29056187-29056206 MsG0480019890.01.T01:intron 25.0%
! TGAAATTAGTTAAGGTAGTT+AGG + Chr4:29055689-29055708 MsG0480019890.01.T01:intron 25.0%
! TGAATAAATGAATGCCTAAT+TGG - Chr4:29056223-29056242 None:intergenic 25.0%
!!! AGTGTGTTATTCTTAGTTTT+CGG + Chr4:29057414-29057433 MsG0480019890.01.T01:CDS 25.0%
!!! ATCTGATTTTATTCTAGGAA+AGG - Chr4:29056308-29056327 None:intergenic 25.0%
!!! TACGTATGTTTTTGAATTCA+GGG + Chr4:29056734-29056753 MsG0480019890.01.T01:intron 25.0%
!!! TTACGTATGTTTTTGAATTC+AGG + Chr4:29056733-29056752 MsG0480019890.01.T01:intron 25.0%
!!! TTCTATTATTGCTTGGTTTT+GGG + Chr4:29057449-29057468 MsG0480019890.01.T01:CDS 25.0%
!!! TTTAATGTTTTTGACCTAGT+CGG + Chr4:29057146-29057165 MsG0480019890.01.T01:intron 25.0%
AATCTCGAGTAACTTGATTT+AGG + Chr4:29056613-29056632 MsG0480019890.01.T01:intron 30.0%
ATACCACTTAATTGTTCCAA+CGG - Chr4:29057009-29057028 None:intergenic 30.0%
ATCAGTGTAATCATATGTGT+CGG + Chr4:29055445-29055464 MsG0480019890.01.T01:intron 30.0%
ATCATATATGATGTGAGGAT+GGG + Chr4:29055637-29055656 MsG0480019890.01.T01:intron 30.0%
ATGAAACACAAACATAGACA+CGG + Chr4:29055375-29055394 MsG0480019890.01.T01:intron 30.0%
CATAGATCATATATGATGTG+AGG + Chr4:29055632-29055651 MsG0480019890.01.T01:intron 30.0%
CTATCTAGTTAGTGTAATTG+AGG + Chr4:29055749-29055768 MsG0480019890.01.T01:intron 30.0%
GAACAATCATGTAGACAAAA+TGG + Chr4:29056463-29056482 MsG0480019890.01.T01:intron 30.0%
GAGAATGCAAAAATTGCTAT+TGG + Chr4:29057197-29057216 MsG0480019890.01.T01:intron 30.0%
GCTTATGTTAGGATTAACTT+GGG + Chr4:29055080-29055099 MsG0480019890.01.T01:CDS 30.0%
GCTTTGTAGTTAGTATTACT+TGG + Chr4:29056376-29056395 MsG0480019890.01.T01:intron 30.0%
TCATCGTAGTACTTCATAAT+GGG - Chr4:29056906-29056925 None:intergenic 30.0%
TGCTTATGTTAGGATTAACT+TGG + Chr4:29055079-29055098 MsG0480019890.01.T01:CDS 30.0%
TTAGTTAAGGTAGTTAGGAT+TGG + Chr4:29055694-29055713 MsG0480019890.01.T01:intron 30.0%
TTCATCGTAGTACTTCATAA+TGG - Chr4:29056907-29056926 None:intergenic 30.0%
TTCTCAATTATCATCGTGAT+AGG - Chr4:29055416-29055435 None:intergenic 30.0%
! CAATTTTTGCATTCTCAAGA+AGG - Chr4:29057193-29057212 None:intergenic 30.0%
! CAGCTTTTGTAAATATTCTC+AGG - Chr4:29056774-29056793 None:intergenic 30.0%
! GTTCTATTATTGCTTGGTTT+TGG + Chr4:29057448-29057467 MsG0480019890.01.T01:CDS 30.0%
!! ACGTATGTTTTTGAATTCAG+GGG + Chr4:29056735-29056754 MsG0480019890.01.T01:intron 30.0%
!! ATGTTTTTATGTTAAGGGTC+GGG + Chr4:29055147-29055166 MsG0480019890.01.T01:intron 30.0%
!! GATGTTTTTATGTTAAGGGT+CGG + Chr4:29055146-29055165 MsG0480019890.01.T01:intron 30.0%
AAATCATCAATACGCTGGTA+AGG - Chr4:29057344-29057363 None:intergenic 35.0%
AAGCAAGTAATAAGGAGAAC+TGG - Chr4:29057128-29057147 None:intergenic 35.0%
AATCCTTAAGAAGTTGAGAG+TGG - Chr4:29057100-29057119 None:intergenic 35.0%
ACTCTCAACTTCTTAAGGAT+TGG + Chr4:29057099-29057118 MsG0480019890.01.T01:CDS 35.0%
AGCTAAAATCATCAATACGC+TGG - Chr4:29057349-29057368 None:intergenic 35.0%
ATACCGTTGGAACAATTAAG+TGG + Chr4:29057003-29057022 MsG0480019890.01.T01:CDS 35.0%
ATTTCCAGGTTACATTACAG+AGG + Chr4:29057070-29057089 MsG0480019890.01.T01:CDS 35.0%
CATTGTACAAAACCATGCAT+AGG - Chr4:29056869-29056888 None:intergenic 35.0%
CTACGATGAACTAAAGATTC+AGG + Chr4:29056917-29056936 MsG0480019890.01.T01:CDS 35.0%
GATCATATATGATGTGAGGA+TGG + Chr4:29055636-29055655 MsG0480019890.01.T01:intron 35.0%
GGAGTGTGTGTTAAAATAGT+TGG + Chr4:29055658-29055677 MsG0480019890.01.T01:intron 35.0%
GTATAGTGTCTGACATATGT+CGG + Chr4:29056040-29056059 MsG0480019890.01.T01:intron 35.0%
GTTGGAACAATTAAGTGGTA+TGG + Chr4:29057008-29057027 MsG0480019890.01.T01:CDS 35.0%
TGTGATTATGTTCCTATGCA+TGG + Chr4:29056854-29056873 MsG0480019890.01.T01:intron 35.0%
TGTGATTGCATTCAAAGTGT+CGG - Chr4:29055878-29055897 None:intergenic 35.0%
TGTTTACACACAAGATGTCT+CGG + Chr4:29056792-29056811 MsG0480019890.01.T01:intron 35.0%
TTAGTATTACTTGGGCATCT+CGG + Chr4:29056385-29056404 MsG0480019890.01.T01:intron 35.0%
TTGAATGCAATCACATGTGT+CGG + Chr4:29055883-29055902 MsG0480019890.01.T01:intron 35.0%
! GTTTTGCATACCAACCAATT+AGG + Chr4:29056539-29056558 MsG0480019890.01.T01:intron 35.0%
! TGCTGTAACTTTACGGTTTT+AGG - Chr4:29057372-29057391 None:intergenic 35.0%
!! CTTCTGGTTCTATTATTGCT+TGG + Chr4:29057442-29057461 MsG0480019890.01.T01:CDS 35.0%
!! GTTATTCTTAGTTTTCGGTC+TGG + Chr4:29057419-29057438 MsG0480019890.01.T01:CDS 35.0%
ACATCCTCTGTAATGTAACC+TGG - Chr4:29057077-29057096 None:intergenic 40.0%
AGGTTGTGAGGGATTGAATT+GGG + Chr4:29055537-29055556 MsG0480019890.01.T01:intron 40.0%
ATTAGATGGACCTGCCTAAT+TGG - Chr4:29056556-29056575 None:intergenic 40.0%
CAAACACAATACTACCACAC+CGG - Chr4:29055607-29055626 None:intergenic 40.0%
GAGTGCAAATCTCTACTTTG+CGG + Chr4:29056824-29056843 MsG0480019890.01.T01:intron 40.0%
TAGGTTGTGAGGGATTGAAT+TGG + Chr4:29055536-29055555 MsG0480019890.01.T01:intron 40.0%
TAGTATTACTTGGGCATCTC+GGG + Chr4:29056386-29056405 MsG0480019890.01.T01:intron 40.0%
TATACGGGTGTGCATATCAA+TGG + Chr4:29056121-29056140 MsG0480019890.01.T01:intron 40.0%
TATATGCAAGCTGTCATTGC+TGG + Chr4:29055283-29055302 MsG0480019890.01.T01:CDS 40.0%
TCAAATGCCAATGTTGTGTC+CGG + Chr4:29055585-29055604 MsG0480019890.01.T01:intron 40.0%
TGTCCACTCTCAACTTCTTA+AGG + Chr4:29057094-29057113 MsG0480019890.01.T01:CDS 40.0%
TGTTTGGAGATCAACTGTGT+GGG + Chr4:29056980-29056999 MsG0480019890.01.T01:CDS 40.0%
! AATCTCTGTCCGGAAGATTT+TGG - Chr4:29057277-29057296 None:intergenic 40.0%
! AGAGATTTGCACTCTTTTGC+AGG - Chr4:29056818-29056837 None:intergenic 40.0%
! ATGGGAGTGTGAAACCAATT+AGG + Chr4:29056206-29056225 MsG0480019890.01.T01:intron 40.0%
! CAAGAAGGTATACTGCAGTA+AGG - Chr4:29057178-29057197 None:intergenic 40.0%
! CCTAGCATTTTTGTGCATCT+CGG + Chr4:29056344-29056363 MsG0480019890.01.T01:intron 40.0%
! CTAGCATTTTTGTGCATCTC+GGG + Chr4:29056345-29056364 MsG0480019890.01.T01:intron 40.0%
! TTTTATGTTAAGGGTCGGGT+CGG + Chr4:29055151-29055170 MsG0480019890.01.T01:intron 40.0%
!! ACACTACTGACTTGTCTCTT+GGG + Chr4:29057303-29057322 MsG0480019890.01.T01:CDS 40.0%
!!! GTTGTTTTTCCCCTCTTCTT+AGG + Chr4:29057238-29057257 MsG0480019890.01.T01:intron 40.0%
ACAGCTTGCATATACCTCTC+AGG - Chr4:29055277-29055296 None:intergenic 45.0%
AGACAAGTCAGTAGTGTGAC+AGG - Chr4:29057300-29057319 None:intergenic 45.0%
ATCAATGGCAATGTTGTGCC+CGG + Chr4:29056136-29056155 MsG0480019890.01.T01:intron 45.0%
CCGAGATGCACAAAAATGCT+AGG - Chr4:29056347-29056366 None:intergenic 45.0%
CTACACGGTCCAAAATCTTC+CGG + Chr4:29057265-29057284 MsG0480019890.01.T01:CDS 45.0%
CTCCAAACAGATCCAGTCAA+AGG - Chr4:29056969-29056988 None:intergenic 45.0%
CTCGGCATGCTGTAACTTTA+CGG - Chr4:29057379-29057398 None:intergenic 45.0%
CTCTTCTTAGGATGCCTACA+CGG + Chr4:29057250-29057269 MsG0480019890.01.T01:intron 45.0%
CTGTGCTTCATAGGTTGTGA+GGG + Chr4:29055526-29055545 MsG0480019890.01.T01:intron 45.0%
CTGTTTGGAGATCAACTGTG+TGG + Chr4:29056979-29056998 MsG0480019890.01.T01:CDS 45.0%
GGTTCTATTGTTGGATCTGC+TGG + Chr4:29055244-29055263 MsG0480019890.01.T01:CDS 45.0%
GTCCTTTGACTGGATCTGTT+TGG + Chr4:29056964-29056983 MsG0480019890.01.T01:CDS 45.0%
GTGACACTCGCAATATTTCC+AGG + Chr4:29057056-29057075 MsG0480019890.01.T01:CDS 45.0%
GTGTAGGCATCCTAAGAAGA+GGG - Chr4:29057251-29057270 None:intergenic 45.0%
TAGTGTCTGACATATGTCGG+TGG + Chr4:29056043-29056062 MsG0480019890.01.T01:intron 45.0%
TCTGTGCTTCATAGGTTGTG+AGG + Chr4:29055525-29055544 MsG0480019890.01.T01:intron 45.0%
TGCATACCAACCAATTAGGC+AGG + Chr4:29056543-29056562 MsG0480019890.01.T01:intron 45.0%
TGTAGGCATCCTAAGAAGAG+GGG - Chr4:29057250-29057269 None:intergenic 45.0%
TGTCTCTTGGGGCTTACAAA+TGG + Chr4:29057315-29057334 MsG0480019890.01.T01:CDS 45.0%
TTGGTGCAGGGTTCTATTGT+TGG + Chr4:29055235-29055254 MsG0480019890.01.T01:intron 45.0%
TTTATGTTAAGGGTCGGGTC+GGG + Chr4:29055152-29055171 MsG0480019890.01.T01:intron 45.0%
! ATCGTGATAGGTGTCGTGTT+TGG - Chr4:29055404-29055423 None:intergenic 45.0%
! GGTTGGTATGCAAAACTACG+AGG - Chr4:29056535-29056554 None:intergenic 45.0%
! TTCGTTGTCCGACACCATTT+TGG + Chr4:29055912-29055931 MsG0480019890.01.T01:intron 45.0%
!! CACACTACTGACTTGTCTCT+TGG + Chr4:29057302-29057321 MsG0480019890.01.T01:CDS 45.0%
!! CACTACTGACTTGTCTCTTG+GGG + Chr4:29057304-29057323 MsG0480019890.01.T01:CDS 45.0%
!! GGTGGGTTTTATGTTGCTGT+TGG + Chr4:29055181-29055200 MsG0480019890.01.T01:intron 45.0%
!! TATGTTGCTGTTGGTGCTGT+TGG + Chr4:29055190-29055209 MsG0480019890.01.T01:intron 45.0%
!! TGTCGGTGTCGTGTCATATA+CGG + Chr4:29055462-29055481 MsG0480019890.01.T01:intron 45.0%
!! TTAGTTTTCGGTCTGGCTTC+TGG + Chr4:29057426-29057445 MsG0480019890.01.T01:CDS 45.0%
!! AAATTTCAATAAAAAAAAAA+AGG - Chr4:29056685-29056704 None:intergenic 5.0%
!!! AATTTTTAAAATTATTATAC+GGG + Chr4:29056106-29056125 MsG0480019890.01.T01:intron 5.0%
AAAGATTCAGGCAGTCGCTG+TGG + Chr4:29056929-29056948 MsG0480019890.01.T01:CDS 50.0%
ACCACACAAACATGACCACC+GGG - Chr4:29056157-29056176 None:intergenic 50.0%
ACTCACAATCCCAGCAGTCT+CGG - Chr4:29057397-29057416 None:intergenic 50.0%
CACCAATGCATCAGCAACAC+CGG - Chr4:29055221-29055240 None:intergenic 50.0%
CACCACACAAACATGACCAC+CGG - Chr4:29056158-29056177 None:intergenic 50.0%
CGTGTAGGCATCCTAAGAAG+AGG - Chr4:29057252-29057271 None:intergenic 50.0%
GACGACAACAGTCCTTTGAC+TGG + Chr4:29056954-29056973 MsG0480019890.01.T01:CDS 50.0%
GATGGACCTGCCTAATTGGT+TGG - Chr4:29056552-29056571 None:intergenic 50.0%
GCACAGACACTCCTCAGATT+AGG - Chr4:29055512-29055531 None:intergenic 50.0%
GTGTGACAGGAATCTCTGTC+CGG - Chr4:29057287-29057306 None:intergenic 50.0%
TACCACACCGGACACAACAT+TGG - Chr4:29055595-29055614 None:intergenic 50.0%
TACGGATGCATGTCTGACAC+CGG + Chr4:29055480-29055499 MsG0480019890.01.T01:intron 50.0%
TCAACTGTGTGGGATACCGT+TGG + Chr4:29056990-29057009 MsG0480019890.01.T01:CDS 50.0%
TCCTCAGATTAGGTGTGTCC+CGG - Chr4:29055502-29055521 None:intergenic 50.0%
! CGGAAGATTTTGGACCGTGT+AGG - Chr4:29057267-29057286 None:intergenic 50.0%
! GTTGCTGATGCATTGGTGCA+GGG + Chr4:29055223-29055242 MsG0480019890.01.T01:intron 50.0%
! TGTTGCTGATGCATTGGTGC+AGG + Chr4:29055222-29055241 MsG0480019890.01.T01:intron 50.0%
!! CAGTAAGGCTTTTGCCGACT+AGG - Chr4:29057163-29057182 None:intergenic 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG + Chr4:29055517-29055536 MsG0480019890.01.T01:intron 50.0%
!! GTTGGTGCTGTTGGACTTTC+CGG + Chr4:29055199-29055218 MsG0480019890.01.T01:intron 50.0%
!! TTCCGGTGTTGCTGATGCAT+TGG + Chr4:29055216-29055235 MsG0480019890.01.T01:intron 50.0%
AATGGCAATGTTGTGCCCGG+TGG + Chr4:29056139-29056158 MsG0480019890.01.T01:intron 55.0%
ACCGGGACACACCTAATCTG+AGG + Chr4:29055498-29055517 MsG0480019890.01.T01:intron 55.0%
ACGGATGCATGTCTGACACC+GGG + Chr4:29055481-29055500 MsG0480019890.01.T01:intron 55.0%
TACAGCATGCCGAGACTGCT+GGG + Chr4:29057385-29057404 MsG0480019890.01.T01:CDS 55.0%
TGCCAATGTTGTGTCCGGTG+TGG + Chr4:29055590-29055609 MsG0480019890.01.T01:intron 55.0%
TTACAGCATGCCGAGACTGC+TGG + Chr4:29057384-29057403 MsG0480019890.01.T01:CDS 55.0%
! AAGGGTCGGGTCGGGTTTTA+CGG + Chr4:29055160-29055179 MsG0480019890.01.T01:intron 55.0%
! ATTGCTGGCACTGCTGCTTC+TGG + Chr4:29055298-29055317 MsG0480019890.01.T01:CDS 55.0%
CTGCTGGTGAGTTGCCTGAG+AGG + Chr4:29055260-29055279 MsG0480019890.01.T01:CDS 60.0%
GCCCGGTGGTCATGTTTGTG+TGG + Chr4:29056153-29056172 MsG0480019890.01.T01:intron 60.0%
! GTCGGGTCGGGTTTTACGGT+GGG + Chr4:29055164-29055183 MsG0480019890.01.T01:intron 60.0%
! GGTCGGGTCGGGTTTTACGG+TGG + Chr4:29055163-29055182 MsG0480019890.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 29055023 29057479 29055023 ID=MsG0480019890.01;Name=MsG0480019890.01
Chr4 mRNA 29055023 29057479 29055023 ID=MsG0480019890.01.T01;Parent=MsG0480019890.01;Name=MsG0480019890.01.T01;_AED=0.39;_eAED=0.40;_QI=0|0|0|1|1|1|4|0|221
Chr4 exon 29055023 29055163 29055023 ID=MsG0480019890.01.T01:exon:9552;Parent=MsG0480019890.01.T01
Chr4 exon 29055244 29055319 29055244 ID=MsG0480019890.01.T01:exon:9553;Parent=MsG0480019890.01.T01
Chr4 exon 29056892 29057120 29056892 ID=MsG0480019890.01.T01:exon:9554;Parent=MsG0480019890.01.T01
Chr4 exon 29057260 29057479 29057260 ID=MsG0480019890.01.T01:exon:9555;Parent=MsG0480019890.01.T01
Chr4 CDS 29055023 29055163 29055023 ID=MsG0480019890.01.T01:cds;Parent=MsG0480019890.01.T01
Chr4 CDS 29055244 29055319 29055244 ID=MsG0480019890.01.T01:cds;Parent=MsG0480019890.01.T01
Chr4 CDS 29056892 29057120 29056892 ID=MsG0480019890.01.T01:cds;Parent=MsG0480019890.01.T01
Chr4 CDS 29057260 29057479 29057260 ID=MsG0480019890.01.T01:cds;Parent=MsG0480019890.01.T01
Gene Sequence

>MsG0480019890.01.T01

ATGCTCGTTGGTCTCTTTGGTCTTACTGTGATTATTCTTTATAGACATAAATCTCATGCTTATGTTAGGATTAACTTGGGTCTTGCACTTTTTGTTGTTTCGTTGCTTCTTGTTCCTTTGATTGATGTTTTTATGTTAAGGGGTTCTATTGTTGGATCTGCTGGTGAGTTGCCTGAGAGGTATATGCAAGCTGTCATTGCTGGCACTGCTGCTTCTGCTCACAAACTTCCCATTATGAAGTACTACGATGAACTAAAGATTCAGGCAGTCGCTGTGGAAGACGACAACAGTCCTTTGACTGGATCTGTTTGGAGATCAACTGTGTGGGATACCGTTGGAACAATTAAGTGGTATGGAGTTGCATTAATGCTCATTTATGTTGTGACACTCGCAATATTTCCAGGTTACATTACAGAGGATGTCCACTCTCAACTTCTTAAGGATTGGATGCCTACACGGTCCAAAATCTTCCGGACAGAGATTCCTGTCACACTACTGACTTGTCTCTTGGGGCTTACAAATGGATACCTTACCAGCGTATTGATGATTTTAGCTCCTAAAACCGTAAAGTTACAGCATGCCGAGACTGCTGGGATTGTGAGTGTGTTATTCTTAGTTTTCGGTCTGGCTTCTGGTTCTATTATTGCTTGGTTTTGGGTCATCTGA
Protein sequence

>MsG0480019890.01.T01

MLVGLFGLTVIILYRHKSHAYVRINLGLALFVVSLLLVPLIDVFMLRGSIVGSAGELPERYMQAVIAGTAASAHKLPIMKYYDELKIQAVAVEDDNSPLTGSVWRSTVWDTVGTIKWYGVALMLIYVVTLAIFPGYITEDVHSQLLKDWMPTRSKIFRTEIPVTLLTCLLGLTNGYLTSVLMILAPKTVKLQHAETAGIVSVLFLVFGLASGSIIAWFWVI*