AlfalfaGEDB | MsG0780040645.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040645.01

KEGG: K12817
GO: GO:0005681 GO:0008380
PFAM: PF02840 PF08799

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040645.01.T01	XP_013449742.1	86.618	411	4	1	1	360	1	411	0	705

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040645.01.T01	Q2HJ41	56.436	101	44	0	225	325	242	342	1.02E-37	141

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040645.01.T01	A0A072UD53	86.618	411	4	1	1	360	1	411	0.0	705

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180002898.01	MsG0780040645.01	0.848850	4.712039e-60	8.764073e-57
MsG0280010196.01	MsG0780040645.01	0.827653	1.388892e-54	1.349162e-51
MsG0280011457.01	MsG0780040645.01	0.809990	1.440120e-50	8.579904e-48
MsG0380012054.01	MsG0780040645.01	0.810643	1.040820e-50	6.308341e-48
MsG0380015539.01	MsG0780040645.01	0.831585	1.535391e-55	1.673605e-52
MsG0380016346.01	MsG0780040645.01	0.852723	3.828624e-61	8.074291e-58
MsG0380016573.01	MsG0780040645.01	0.868370	6.865737e-66	2.477609e-62
MsG0380016707.01	MsG0780040645.01	0.812974	3.235367e-51	2.086347e-48
MsG0380016964.01	MsG0780040645.01	0.862678	4.276192e-64	1.262748e-60
MsG0380017076.01	MsG0780040645.01	0.835349	1.766833e-56	2.155059e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040645.01.T01	MTR_7g095000	86.618	411	4	1	1	360	1	411	0.0	705

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040645.01.T01	AT1G03140	61.557	424	95	4	1	360	1	420	2.93e-162	461
MsG0780040645.01.T01	AT1G54590	53.425	292	60	8	122	356	85	357	2.64e-90	275

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Find 111 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAATTAACTATCTCT+TGG	0.424273	7:-80540803	None:intergenic
AAACAACCTGTGACGTTATT+CGG	0.305283	7:+80537092	MsG0780040645.01.T01:CDS
AAGAAGTCATCCGCCGTCTC+CGG	0.452806	7:+80537063	MsG0780040645.01.T01:CDS
AAGCGGCAGAAGGCGGAGGA+TGG	0.550000	7:+80537272	MsG0780040645.01.T01:CDS
AATGGACCATTATATCAGGC+TGG	0.593837	7:+80540478	MsG0780040645.01.T01:CDS
AATTAACTATCTCTTGGAGC+AGG	0.536566	7:-80540797	None:intergenic
ACGATGATGCGAGACTCGAT+CGG	0.578071	7:+80537120	MsG0780040645.01.T01:CDS
ACTGCTTTAGATGGCAGTGT+CGG	0.551623	7:-80540671	None:intergenic
AGCAGAAGAGAGATTTAGTG+GGG	0.589925	7:+80540739	MsG0780040645.01.T01:CDS
AGCAGCGGCGGAGGTGACGA+AGG	0.605500	7:-80536982	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTAACAGTTTGGCAAAT+GGG	+	Chr7:80540696-80540715	MsG0780040645.01.T01:CDS	30.0%
ATCAAGCAATTCAGTGATAT+GGG	+	Chr7:80539700-80539719	MsG0780040645.01.T01:intron	30.0%
ATCAGAGTACAGTACAAAAT+TGG	-	Chr7:80538967-80538986	None:intergenic	30.0%
CTACATCTCACTTTAGATTT+GGG	-	Chr7:80539630-80539649	None:intergenic	30.0%
GAATGTGATTGGAAACTAAT+TGG	+	Chr7:80537738-80537757	MsG0780040645.01.T01:intron	30.0%
GAGGTTTACATGGATAAAAT+TGG	-	Chr7:80538821-80538840	None:intergenic	30.0%
GATACAAGACCTAAAAATGA+AGG	-	Chr7:80541010-80541029	None:intergenic	30.0%
GGGAGAGTTTCTTTAAATTT+AGG	-	Chr7:80538579-80538598	None:intergenic	30.0%
GTTTATAGTATAGTCAGTTC+AGG	+	Chr7:80540958-80540977	MsG0780040645.01.T01:three_prime_UTR	30.0%
TAAGGATTTGAAAAGGATGA+AGG	+	Chr7:80537373-80537392	MsG0780040645.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	80536765	80541095	80536765	ID=MsG0780040645.01;Name=MsG0780040645.01
Chr7	mRNA	80536765	80541095	80536765	ID=MsG0780040645.01.T01;Parent=MsG0780040645.01;Name=MsG0780040645.01.T01;_AED=0.35;_eAED=0.35;_QI=0\|0\|0.5\|1\|1\|1\|2\|278\|360
Chr7	exon	80536765	80537433	80536765	ID=MsG0780040645.01.T01:exon:18584;Parent=MsG0780040645.01.T01
Chr7	exon	80540404	80541095	80540404	ID=MsG0780040645.01.T01:exon:18585;Parent=MsG0780040645.01.T01
Chr7	CDS	80536765	80537433	80536765	ID=MsG0780040645.01.T01:cds;Parent=MsG0780040645.01.T01
Chr7	CDS	80540404	80540817	80540404	ID=MsG0780040645.01.T01:cds;Parent=MsG0780040645.01.T01
Chr7	three_prime_UTR	80540818	80541095	80540818	ID=MsG0780040645.01.T01:three_prime_utr;Parent=MsG0780040645.01.T01

Gene Sequence

>MsG0780040645.01.T01

ATGGACCTTCTAAAGCAAGAGCTTCTCAAAAAACGCCAATCCCTAGCCGAAGAAACCGGCGGCAAGAAATTCTTCAAACGCTCCGAGATCCAACAGAAACAAATCCAAAAACTCCGCGAAGAAGAAAAACGCGAACTCGAAGCCAAATCCAAAAAACGCAACTCAACCACCTCCGACACCGTCTCCACCGTAACAACCTCATCAACCAACGCTTCCTCCTTCGTCACCTCCGCCGCTGCTTCATCCAGCGCTTCCCTCCCCGACGAACAAAACATAGACAGCCTCGTCCTTCCTAAACAAGAAGTCATCCGCCGTCTCCGGTTTCTCAAACAACCTGTGACGTTATTCGGCGAAGACGATGATGCGAGACTCGATCGGCTTAAATACGTTCTCAAAGCTGGATTGTTTGAAGTGGATAGTGATATGACGGAAGGACAGACGAATGATTTCTTGCGTGATATTGCGGAGTTGAGGAAGAGGCAGAAGACGGGGATTTTGAGTGATAGGAAGCGGCAGAAGGCGGAGGATGGTGCTGCTGAGGATGGTGATGGTGGTGCTGGTGATGATGATTTGAGTGATTGTGGTGGATCTAGTGGTGGTGATAATGATAAGGATTTGAAAAGGATGAAGGCGAATTTCGATGAGCTGTGTGATGAGGACAAGATTTTGGTTCTTCAGGATGACATTCGGCAGGCACTAATGTTGATGGTTGACTGCTGTATGAGGCGAGATTATCTGGCTGCAATGGACCATTATATCAGGCTGGCTATCGGGAATGCTCCCTGGCCTATCGGTGTTACTATGGTTGGTATTCACGAAAGATCGGCCCGTGAAAAGATCTACACAAATAGTGTTGCTCACATCATGAATGATGAAACAACTCGTAAGTACTTACAATCAGTGAAGAGGTTAATGACATTTTGCCAACGGCGTTACCCGACACTGCCATCTAAAGCAGTTGAGTTTAACAGTTTGGCAAATGGGAGTGATCTGCAGTCACTTTTAGCAGAAGAGAGATTTAGTGGGGGCAATCAGTCGTCTGAGGAGAGGCTTAGGATAATGCCTGCTCCAAGAGATAGTTAA

Protein sequence

>MsG0780040645.01.T01

MDLLKQELLKKRQSLAEETGGKKFFKRSEIQQKQIQKLREEEKRELEAKSKKRNSTTSDTVSTVTTSSTNASSFVTSAAASSSASLPDEQNIDSLVLPKQEVIRRLRFLKQPVTLFGEDDDARLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELRKRQKTGILSDRKRQKAEDGAAEDGDGGAGDDDLSDCGGSSGGDNDKDLKRMKANFDELCDEDKILVLQDDIRQALMLMVDCCMRRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTLPSKAVEFNSLANGSDLQSLLAEERFSGGNQSSEERLRIMPAPRDS*