AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040645.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040645.01.T01 MTR_7g095000 86.618 411 4 1 1 360 1 411 0.0 705
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040645.01.T01 AT1G03140 61.557 424 95 4 1 360 1 420 2.93e-162 461
MsG0780040645.01.T01 AT1G54590 53.425 292 60 8 122 356 85 357 2.64e-90 275

Find 111 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATATGATAATGTCAATTA+AGG 0.185033 7:-80540827 None:intergenic
CTGTATGAGGCGAGATTATC+TGG 0.294838 7:+80540451 MsG0780040645.01.T01:CDS
AAACAACCTGTGACGTTATT+CGG 0.305283 7:+80537092 MsG0780040645.01.T01:CDS
TTTCTTGCCGCCGGTTTCTT+CGG 0.312109 7:-80536811 None:intergenic
GCATGTACTTCAGGTTCTTC+AGG 0.319015 7:+80540391 MsG0780040645.01.T01:intron
AGCAGTTGAGTTTAACAGTT+TGG 0.335075 7:+80540688 MsG0780040645.01.T01:CDS
CGGCGGATGACTTCTTGTTT+AGG 0.340183 7:-80537056 None:intergenic
CTTAAATACGTTCTCAAAGC+TGG 0.353113 7:+80537143 MsG0780040645.01.T01:CDS
CTGGCCTATCGGTGTTACTA+TGG 0.360585 7:+80540517 MsG0780040645.01.T01:CDS
TGAGAAGCTCTTGCTTTAGA+AGG 0.370756 7:-80536770 None:intergenic
GTGTGATGAGGACAAGATTT+TGG 0.374080 7:+80537412 MsG0780040645.01.T01:CDS
TAGAACTGTAAAGAAGATTC+AGG 0.374392 7:-80541029 None:intergenic
TTAAACTCAACTGCTTTAGA+TGG 0.395372 7:-80540680 None:intergenic
GTTTATAGTATAGTCAGTTC+AGG 0.401333 7:+80540958 MsG0780040645.01.T01:three_prime_UTR
TTCGTCGGGGAGGGAAGCGC+TGG 0.401745 7:-80537009 None:intergenic
CTGCAATGGACCATTATATC+AGG 0.408980 7:+80540474 MsG0780040645.01.T01:CDS
TCACAGGTTGTTTGAGAAAC+CGG 0.418075 7:-80537082 None:intergenic
AAAATAAATTAACTATCTCT+TGG 0.424273 7:-80540803 None:intergenic
CGGTTTCTTCGGCTAGGGAT+TGG 0.425410 7:-80536800 None:intergenic
AGTTTAACAGTTTGGCAAAT+GGG 0.428747 7:+80540696 MsG0780040645.01.T01:CDS
CGATAGCCAGCCTGATATAA+TGG 0.430348 7:-80540484 None:intergenic
TCGGCAGGCACTAATGTTGA+TGG 0.435972 7:+80540421 MsG0780040645.01.T01:CDS
TGGCTATCGGGAATGCTCCC+TGG 0.443575 7:+80540498 MsG0780040645.01.T01:CDS
GAGTTTAACAGTTTGGCAAA+TGG 0.450367 7:+80540695 MsG0780040645.01.T01:CDS
AAGAAGTCATCCGCCGTCTC+CGG 0.452806 7:+80537063 MsG0780040645.01.T01:CDS
AGTCAGTTCAGGCGCAGTTT+CGG 0.454057 7:+80540969 MsG0780040645.01.T01:three_prime_UTR
TTGAGGAAGAGGCAGAAGAC+GGG 0.457591 7:+80537233 MsG0780040645.01.T01:CDS
GATTTGTTTCTGTTGGATCT+CGG 0.459315 7:-80536847 None:intergenic
GAGGATGGTGATGGTGGTGC+TGG 0.465798 7:+80537302 MsG0780040645.01.T01:CDS
ATTGCACGGATTCTCAATAC+TGG 0.466817 7:-80540861 None:intergenic
AGTCGTCTGAGGAGAGGCTT+AGG 0.468760 7:+80540768 MsG0780040645.01.T01:CDS
CATTATATCAGGCTGGCTAT+CGG 0.468919 7:+80540485 MsG0780040645.01.T01:CDS
CATATGATAATGTCAATTAA+GGG 0.469576 7:-80540826 None:intergenic
GCTGGATGAAGCAGCGGCGG+AGG 0.472515 7:-80536991 None:intergenic
ATTATATCAGGCTGGCTATC+GGG 0.475178 7:+80540486 MsG0780040645.01.T01:CDS
CAATCCCTAGCCGAAGAAAC+CGG 0.477260 7:+80536801 MsG0780040645.01.T01:CDS
TTAGCAGAAGAGAGATTTAG+TGG 0.482256 7:+80540737 MsG0780040645.01.T01:CDS
GGGAATGCTCCCTGGCCTAT+CGG 0.486347 7:+80540506 MsG0780040645.01.T01:CDS
CTATACTATAAACTAATACT+AGG 0.491395 7:-80540948 None:intergenic
GATGATGATTTGAGTGATTG+TGG 0.495482 7:+80537326 MsG0780040645.01.T01:CDS
CTGCTTTAGATGGCAGTGTC+GGG 0.496151 7:-80540670 None:intergenic
TGATTTCTTGCGTGATATTG+CGG 0.497819 7:+80537208 MsG0780040645.01.T01:CDS
GAGGATGGTGCTGCTGAGGA+TGG 0.497989 7:+80537287 MsG0780040645.01.T01:CDS
AGGTTCTTCAGGATGACATT+CGG 0.502212 7:+80540402 MsG0780040645.01.T01:intron
GTTGGTTGATGAGGTTGTTA+CGG 0.509127 7:-80536952 None:intergenic
GCCGCCGGTTTCTTCGGCTA+GGG 0.511048 7:-80536805 None:intergenic
TGCCGCCGGTTTCTTCGGCT+AGG 0.513870 7:-80536806 None:intergenic
GAGAATCCGTGCAATGTATG+AGG 0.514561 7:+80540869 MsG0780040645.01.T01:three_prime_UTR
TAGTGGTGGTGATAATGATA+AGG 0.515615 7:+80537355 MsG0780040645.01.T01:CDS
CATAGTAACACCGATAGGCC+AGG 0.517646 7:-80540516 None:intergenic
TAAGGATTTGAAAAGGATGA+AGG 0.521027 7:+80537373 MsG0780040645.01.T01:CDS
ATTTCTCCTCATACATTGCA+CGG 0.521071 7:-80540875 None:intergenic
GGTGGAGACGGTGTCGGAGG+TGG 0.529873 7:-80536931 None:intergenic
AGTGATTGTGGTGGATCTAG+TGG 0.530233 7:+80537338 MsG0780040645.01.T01:CDS
GCGAGATTATCTGGCTGCAA+TGG 0.530625 7:+80540460 MsG0780040645.01.T01:CDS
CAAAGCTGGATTGTTTGAAG+TGG 0.534244 7:+80537157 MsG0780040645.01.T01:CDS
AATTAACTATCTCTTGGAGC+AGG 0.536566 7:-80540797 None:intergenic
CCTATCGGTGTTACTATGGT+TGG 0.537411 7:+80540521 MsG0780040645.01.T01:CDS
CTTCTTGTTTAGGAAGGACG+AGG 0.539570 7:-80537046 None:intergenic
ATAATGATAAGGATTTGAAA+AGG 0.540471 7:+80537366 MsG0780040645.01.T01:CDS
TCTTCAGGATGACATTCGGC+AGG 0.544712 7:+80540406 MsG0780040645.01.T01:CDS
GTTGAGGAAGAGGCAGAAGA+CGG 0.547478 7:+80537232 MsG0780040645.01.T01:CDS
GGTGCTGCTGAGGATGGTGA+TGG 0.548826 7:+80537293 MsG0780040645.01.T01:CDS
TAGCAGAAGAGAGATTTAGT+GGG 0.549817 7:+80540738 MsG0780040645.01.T01:CDS
AAGCGGCAGAAGGCGGAGGA+TGG 0.550000 7:+80537272 MsG0780040645.01.T01:CDS
ACTGCTTTAGATGGCAGTGT+CGG 0.551623 7:-80540671 None:intergenic
GGAGGAAGCGTTGGTTGATG+AGG 0.556233 7:-80536961 None:intergenic
GGATGACTTCTTGTTTAGGA+AGG 0.558895 7:-80537052 None:intergenic
TTTGAAGAATTTCTTGCCGC+CGG 0.562591 7:-80536820 None:intergenic
TGATGGTTGACTGCTGTATG+AGG 0.563302 7:+80540438 MsG0780040645.01.T01:CDS
GGAGCGAAACTTAAAACCAA+GGG 0.566951 7:-80540927 None:intergenic
GGTTGGTATTCACGAAAGAT+CGG 0.567075 7:+80540538 MsG0780040645.01.T01:CDS
TAGGAAGCGGCAGAAGGCGG+AGG 0.573088 7:+80537268 MsG0780040645.01.T01:CDS
GAGTGATAGGAAGCGGCAGA+AGG 0.573616 7:+80537262 MsG0780040645.01.T01:CDS
ACGATGATGCGAGACTCGAT+CGG 0.578071 7:+80537120 MsG0780040645.01.T01:CDS
GCTGCTGAGGATGGTGATGG+TGG 0.582674 7:+80537296 MsG0780040645.01.T01:CDS
GGTGACGAAGGAGGAAGCGT+TGG 0.586143 7:-80536970 None:intergenic
AGCGGCGGAGGTGACGAAGG+AGG 0.587328 7:-80536979 None:intergenic
AGCAGAAGAGAGATTTAGTG+GGG 0.589925 7:+80540739 MsG0780040645.01.T01:CDS
GCAGTGTCGGGTAACGCCGT+TGG 0.590389 7:-80540658 None:intergenic
AATGGACCATTATATCAGGC+TGG 0.593837 7:+80540478 MsG0780040645.01.T01:CDS
AGCGCTGGATGAAGCAGCGG+CGG 0.595214 7:-80536994 None:intergenic
ATATTGCGGAGTTGAGGAAG+AGG 0.597099 7:+80537222 MsG0780040645.01.T01:CDS
GGCGGAGGATGGTGCTGCTG+AGG 0.603000 7:+80537283 MsG0780040645.01.T01:CDS
AGCAGCGGCGGAGGTGACGA+AGG 0.605500 7:-80536982 None:intergenic
TGAGGAAGAGGCAGAAGACG+GGG 0.610880 7:+80537234 MsG0780040645.01.T01:CDS
TGAAGTGGATAGTGATATGA+CGG 0.612285 7:+80537172 MsG0780040645.01.T01:CDS
GATTGTGGTGGATCTAGTGG+TGG 0.612515 7:+80537341 MsG0780040645.01.T01:CDS
AGTACTTACAATCAGTGAAG+AGG 0.612562 7:+80540621 MsG0780040645.01.T01:CDS
TGATAGGAAGCGGCAGAAGG+CGG 0.617704 7:+80537265 MsG0780040645.01.T01:CDS
TCTTCGCCGAATAACGTCAC+AGG 0.618610 7:-80537098 None:intergenic
GGAAGCGCTGGATGAAGCAG+CGG 0.620240 7:-80536997 None:intergenic
TGCGTGATATTGCGGAGTTG+AGG 0.622575 7:+80537216 MsG0780040645.01.T01:CDS
TGAGGTTGTTACGGTGGAGA+CGG 0.623480 7:-80536943 None:intergenic
GTGGATAGTGATATGACGGA+AGG 0.630455 7:+80537176 MsG0780040645.01.T01:CDS
GCAATCAGTCGTCTGAGGAG+AGG 0.632643 7:+80540762 MsG0780040645.01.T01:CDS
GTTTGAGAAACCGGAGACGG+CGG 0.644055 7:-80537073 None:intergenic
TGTTACGGTGGAGACGGTGT+CGG 0.645226 7:-80536937 None:intergenic
ATAGTAACACCGATAGGCCA+GGG 0.645385 7:-80540515 None:intergenic
GATGATTTGAGTGATTGTGG+TGG 0.645582 7:+80537329 MsG0780040645.01.T01:CDS
TACGGTGGAGACGGTGTCGG+AGG 0.648175 7:-80536934 None:intergenic
AGGAGCGAAACTTAAAACCA+AGG 0.650880 7:-80540928 None:intergenic
GTTGTTTGAGAAACCGGAGA+CGG 0.656084 7:-80537076 None:intergenic
CCAACCATAGTAACACCGAT+AGG 0.659700 7:-80540521 None:intergenic
AGTTTCGGTAAGCACTACAA+TGG 0.667769 7:+80540984 MsG0780040645.01.T01:three_prime_UTR
GCAGAAGAGAGATTTAGTGG+GGG 0.669816 7:+80540740 MsG0780040645.01.T01:CDS
GGTTGATGAGGTTGTTACGG+TGG 0.676360 7:-80536949 None:intergenic
TTTCGATGAGCTGTGTGATG+AGG 0.685117 7:+80537400 MsG0780040645.01.T01:CDS
GAGCGAAACTTAAAACCAAG+GGG 0.695446 7:-80540926 None:intergenic
TCCCTAGCCGAAGAAACCGG+CGG 0.703034 7:+80536804 MsG0780040645.01.T01:CDS
AGCGAAACTTAAAACCAAGG+GGG 0.751319 7:-80540925 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTATATTCTATATTTTA+AGG + Chr7:80537912-80537931 MsG0780040645.01.T01:intron 10.0%
!! AAAATAAATTAACTATCTCT+TGG - Chr7:80540806-80540825 None:intergenic 15.0%
!! AAATTGTTTAATATACAATC+AGG + Chr7:80538318-80538337 MsG0780040645.01.T01:intron 15.0%
!! TATTTGAATATCTGTAATAT+AGG + Chr7:80540057-80540076 MsG0780040645.01.T01:intron 15.0%
!! TTGTATTCTAACTAATAAAA+TGG + Chr7:80540361-80540380 MsG0780040645.01.T01:intron 15.0%
!!! AGAATATCTTTAAGATAAAA+GGG - Chr7:80540038-80540057 None:intergenic 15.0%
!!! AGTTTAAAACAAATTGAATT+AGG + Chr7:80537816-80537835 MsG0780040645.01.T01:intron 15.0%
!!! GAAAATAACATGATATTTTA+TGG + Chr7:80539165-80539184 MsG0780040645.01.T01:intron 15.0%
!!! GGCAATTTTATATTTTATTT+TGG + Chr7:80539186-80539205 MsG0780040645.01.T01:intron 15.0%
!!! TAGAATATCTTTAAGATAAA+AGG - Chr7:80540039-80540058 None:intergenic 15.0%
!!! TAGATGTTTTATATTTTTGT+TGG + Chr7:80538029-80538048 MsG0780040645.01.T01:intron 15.0%
!!! TTATATTTTATTTTGGATTC+TGG + Chr7:80539193-80539212 MsG0780040645.01.T01:intron 15.0%
!!! TTGAATTTTACTGTATAAAT+GGG + Chr7:80539971-80539990 MsG0780040645.01.T01:intron 15.0%
!! AAATATGATTGAAGTTGTAA+AGG + Chr7:80539507-80539526 MsG0780040645.01.T01:intron 20.0%
!! ATAATGATAAGGATTTGAAA+AGG + Chr7:80537366-80537385 MsG0780040645.01.T01:CDS 20.0%
!! CAAAGAATTCAATAATAACA+AGG - Chr7:80539770-80539789 None:intergenic 20.0%
!! CTATACTATAAACTAATACT+AGG - Chr7:80540951-80540970 None:intergenic 20.0%
!! TAATTGGATAGTTAATCTTA+GGG + Chr7:80537754-80537773 MsG0780040645.01.T01:intron 20.0%
!!! AATGTAATAGTATTTTCACA+TGG + Chr7:80538128-80538147 MsG0780040645.01.T01:intron 20.0%
!!! CATATGATAATGTCAATTAA+GGG - Chr7:80540829-80540848 None:intergenic 20.0%
!!! CTTGTTATTATTGAATTCTT+TGG + Chr7:80539768-80539787 MsG0780040645.01.T01:intron 20.0%
!!! GTTGAATTTTACTGTATAAA+TGG + Chr7:80539970-80539989 MsG0780040645.01.T01:intron 20.0%
!!! TCATATGATAATGTCAATTA+AGG - Chr7:80540830-80540849 None:intergenic 20.0%
!!! TTATATTTTTGTTGGAAATG+CGG + Chr7:80538037-80538056 MsG0780040645.01.T01:intron 20.0%
!!! TTATGCAAATTATTAAGTTG+CGG - Chr7:80539143-80539162 None:intergenic 20.0%
! AAAACAAATTGAATTAGGAG+TGG + Chr7:80537821-80537840 MsG0780040645.01.T01:intron 25.0%
! AAACAATTTGTAAACATGTC+CGG - Chr7:80538307-80538326 None:intergenic 25.0%
! AAACTTTAGTGAATTTGATG+TGG + Chr7:80539241-80539260 MsG0780040645.01.T01:intron 25.0%
! AATACAAAGAACAACTAACA+AGG - Chr7:80538475-80538494 None:intergenic 25.0%
! AATTATGGTAGGATATGTTA+AGG + Chr7:80537955-80537974 MsG0780040645.01.T01:intron 25.0%
! AGATTTAGAGATTAATGAGT+TGG + Chr7:80539365-80539384 MsG0780040645.01.T01:intron 25.0%
! ATCCACTTTATTCATGTAAA+CGG + Chr7:80538841-80538860 MsG0780040645.01.T01:intron 25.0%
! CAAATCATATGTTTCAAATG+TGG - Chr7:80538369-80538388 None:intergenic 25.0%
! CTAATTGGATAGTTAATCTT+AGG + Chr7:80537753-80537772 MsG0780040645.01.T01:intron 25.0%
! CTTTGTATTATATGTCTTAG+AGG + Chr7:80538486-80538505 MsG0780040645.01.T01:intron 25.0%
! GTTCTATCATAAACCATATT+TGG - Chr7:80539393-80539412 None:intergenic 25.0%
! TACAATATTCTTGTGTATCT+AGG - Chr7:80537898-80537917 None:intergenic 25.0%
! TCTAACTAATAAAATGGATG+TGG + Chr7:80540367-80540386 MsG0780040645.01.T01:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG + Chr7:80539397-80539416 MsG0780040645.01.T01:intron 25.0%
! TTAAAATATCCAATCAGTGT+AGG - Chr7:80538693-80538712 None:intergenic 25.0%
! TTAATATACAATCAGGACTT+AGG + Chr7:80538325-80538344 MsG0780040645.01.T01:intron 25.0%
! TTATCTATGCAAAGAGTAAA+CGG + Chr7:80538755-80538774 MsG0780040645.01.T01:intron 25.0%
! TTCTCTTATATTGTTTCATG+AGG - Chr7:80538553-80538572 None:intergenic 25.0%
!! ATCTTCTGTCATTATGTTTT+CGG + Chr7:80537854-80537873 MsG0780040645.01.T01:intron 25.0%
!! CACATTTGAAACATATGATT+TGG + Chr7:80538367-80538386 MsG0780040645.01.T01:intron 25.0%
!! TATTTGTGTAGATCTTTTCA+CGG - Chr7:80540565-80540584 None:intergenic 25.0%
!!! CTATATTTTAAGGTGAGTTT+TGG + Chr7:80537922-80537941 MsG0780040645.01.T01:intron 25.0%
!!! GTACTTTTTGTTTGAAAGAT+GGG + Chr7:80539215-80539234 MsG0780040645.01.T01:intron 25.0%
!!! GTATTTGGTGTTAGTTTAAT+AGG + Chr7:80537683-80537702 MsG0780040645.01.T01:intron 25.0%
!!! GTTTAAGTTTTGTAGGAAAA+AGG + Chr7:80537564-80537583 MsG0780040645.01.T01:intron 25.0%
!!! TATATTTTTGTTGGAAATGC+GGG + Chr7:80538038-80538057 MsG0780040645.01.T01:intron 25.0%
AGTTTAACAGTTTGGCAAAT+GGG + Chr7:80540696-80540715 MsG0780040645.01.T01:CDS 30.0%
ATCAAGCAATTCAGTGATAT+GGG + Chr7:80539700-80539719 MsG0780040645.01.T01:intron 30.0%
ATCAGAGTACAGTACAAAAT+TGG - Chr7:80538967-80538986 None:intergenic 30.0%
CTACATCTCACTTTAGATTT+GGG - Chr7:80539630-80539649 None:intergenic 30.0%
GAATGTGATTGGAAACTAAT+TGG + Chr7:80537738-80537757 MsG0780040645.01.T01:intron 30.0%
GAGGTTTACATGGATAAAAT+TGG - Chr7:80538821-80538840 None:intergenic 30.0%
GATACAAGACCTAAAAATGA+AGG - Chr7:80541010-80541029 None:intergenic 30.0%
GGGAGAGTTTCTTTAAATTT+AGG - Chr7:80538579-80538598 None:intergenic 30.0%
GTTTATAGTATAGTCAGTTC+AGG + Chr7:80540958-80540977 MsG0780040645.01.T01:three_prime_UTR 30.0%
TAAGGATTTGAAAAGGATGA+AGG + Chr7:80537373-80537392 MsG0780040645.01.T01:CDS 30.0%
TACATTCATGATTCCAACTA+CGG - Chr7:80539550-80539569 None:intergenic 30.0%
TAGAACTGTAAAGAAGATTC+AGG - Chr7:80541032-80541051 None:intergenic 30.0%
TCTACATCTCACTTTAGATT+TGG - Chr7:80539631-80539650 None:intergenic 30.0%
TGAGGTTTACATGAATAAAG+TGG - Chr7:80538846-80538865 None:intergenic 30.0%
TTACATGAATAAAGTGGATG+AGG - Chr7:80538840-80538859 None:intergenic 30.0%
TTCCTACAAAACTTAAACAG+CGG - Chr7:80537562-80537581 None:intergenic 30.0%
! ATTATTAAGTTGCGGTAACA+AGG - Chr7:80539135-80539154 None:intergenic 30.0%
! ATTTGTGTAGATCTTTTCAC+GGG - Chr7:80540564-80540583 None:intergenic 30.0%
! ATTTTACACACCAATTCACA+AGG - Chr7:80539580-80539599 None:intergenic 30.0%
! GAAACATATGATTTGGATGT+TGG + Chr7:80538374-80538393 MsG0780040645.01.T01:intron 30.0%
! TAATGAGTTGGATCCAAATA+TGG + Chr7:80539377-80539396 MsG0780040645.01.T01:intron 30.0%
! TATTTGAGATCCTATGTCAT+GGG + Chr7:80540236-80540255 MsG0780040645.01.T01:intron 30.0%
! TCTGCATTTCACGTATATTT+TGG + Chr7:80539846-80539865 MsG0780040645.01.T01:intron 30.0%
! TTAAACTCAACTGCTTTAGA+TGG - Chr7:80540683-80540702 None:intergenic 30.0%
! TTATTTGAGATCCTATGTCA+TGG + Chr7:80540235-80540254 MsG0780040645.01.T01:intron 30.0%
! TTTGCTATAAATTCCGTAGT+TGG + Chr7:80539534-80539553 MsG0780040645.01.T01:intron 30.0%
!! ACGTATATTTTGGAGAATAC+AGG + Chr7:80539856-80539875 MsG0780040645.01.T01:intron 30.0%
!! ACTGTTTGAACATGTTTTGA+AGG + Chr7:80538080-80538099 MsG0780040645.01.T01:intron 30.0%
!! CTGTTTGAACATGTTTTGAA+GGG + Chr7:80538081-80538100 MsG0780040645.01.T01:intron 30.0%
!! GGTACTTTTTGTTTGAAAGA+TGG + Chr7:80539214-80539233 MsG0780040645.01.T01:intron 30.0%
!! TTGGTTCTAAAAATATCCAG+TGG - Chr7:80538948-80538967 None:intergenic 30.0%
!!! AGGTGAGTTTTATTCTGTTT+AGG + Chr7:80537584-80537603 MsG0780040645.01.T01:intron 30.0%
!!! GTTTTTGGATTTGTTTCTGT+TGG - Chr7:80536857-80536876 None:intergenic 30.0%
!!! TGTTTTGACTCAGGAAATTT+AGG + Chr7:80539932-80539951 MsG0780040645.01.T01:intron 30.0%
!!! TTGTTCTTTTGTTTTGACTC+AGG + Chr7:80539923-80539942 MsG0780040645.01.T01:intron 30.0%
!!! TTTTAAGGTGAGTTTTGGAA+AGG + Chr7:80537927-80537946 MsG0780040645.01.T01:intron 30.0%
AAACAACCTGTGACGTTATT+CGG + Chr7:80537092-80537111 MsG0780040645.01.T01:CDS 35.0%
AACACCAAATACCAGAAAAG+TGG - Chr7:80537675-80537694 None:intergenic 35.0%
AAGAAGTTCTGCTGTGTAAA+AGG + Chr7:80538520-80538539 MsG0780040645.01.T01:intron 35.0%
AATTAACTATCTCTTGGAGC+AGG - Chr7:80540800-80540819 None:intergenic 35.0%
ACAAATTGAATTAGGAGTGG+TGG + Chr7:80537824-80537843 MsG0780040645.01.T01:intron 35.0%
ACTTCACTATGTTCCCATTT+CGG - Chr7:80537799-80537818 None:intergenic 35.0%
AGCAGTTGAGTTTAACAGTT+TGG + Chr7:80540688-80540707 MsG0780040645.01.T01:CDS 35.0%
AGTACTTACAATCAGTGAAG+AGG + Chr7:80540621-80540640 MsG0780040645.01.T01:CDS 35.0%
AGTCTTTAAACACTCCAAGA+GGG - Chr7:80539902-80539921 None:intergenic 35.0%
ATATACAATCAGGACTTAGG+AGG + Chr7:80538328-80538347 MsG0780040645.01.T01:intron 35.0%
ATCAGAGTACAGTACAACAT+TGG - Chr7:80538719-80538738 None:intergenic 35.0%
ATCCACCTTATCCTTGTAAA+CGG + Chr7:80538610-80538629 MsG0780040645.01.T01:intron 35.0%
ATTTCTCCTCATACATTGCA+CGG - Chr7:80540878-80540897 None:intergenic 35.0%
CAAATTGAATTAGGAGTGGT+GGG + Chr7:80537825-80537844 MsG0780040645.01.T01:intron 35.0%
CAACGCAATACTAAGACAAA+TGG - Chr7:80540168-80540187 None:intergenic 35.0%
CACCGTTTACATGAATAAAG+TGG - Chr7:80538870-80538889 None:intergenic 35.0%
CTAAAGTGAGATGTAGAACT+GGG + Chr7:80539634-80539653 MsG0780040645.01.T01:intron 35.0%
CTTAAATACGTTCTCAAAGC+TGG + Chr7:80537143-80537162 MsG0780040645.01.T01:CDS 35.0%
GAGTTTAACAGTTTGGCAAA+TGG + Chr7:80540695-80540714 MsG0780040645.01.T01:CDS 35.0%
GATCAAGCAATTCAGTGATA+TGG + Chr7:80539699-80539718 MsG0780040645.01.T01:intron 35.0%
GATCTCAAATAACCAGCTAA+GGG - Chr7:80540227-80540246 None:intergenic 35.0%
GATGATGATTTGAGTGATTG+TGG + Chr7:80537326-80537345 MsG0780040645.01.T01:CDS 35.0%
GCGAGTATTTGTACTTTGTT+TGG + Chr7:80540103-80540122 MsG0780040645.01.T01:intron 35.0%
GTATAAATGGGAACTCTTGA+AGG + Chr7:80539983-80540002 MsG0780040645.01.T01:intron 35.0%
GTCTATATGCACGTATTGTT+GGG + Chr7:80539795-80539814 MsG0780040645.01.T01:intron 35.0%
TAAAGTGGATGAGGTTTACA+TGG - Chr7:80538831-80538850 None:intergenic 35.0%
TAGCAGAAGAGAGATTTAGT+GGG + Chr7:80540738-80540757 MsG0780040645.01.T01:CDS 35.0%
TAGGAAAACTTACATGCTAG+TGG + Chr7:80537702-80537721 MsG0780040645.01.T01:intron 35.0%
TAGTCTTTAAACACTCCAAG+AGG - Chr7:80539903-80539922 None:intergenic 35.0%
TCCTACAAAACTTAAACAGC+GGG - Chr7:80537561-80537580 None:intergenic 35.0%
TGAAGTGGATAGTGATATGA+CGG + Chr7:80537172-80537191 MsG0780040645.01.T01:CDS 35.0%
TGATTTCTTGCGTGATATTG+CGG + Chr7:80537208-80537227 MsG0780040645.01.T01:CDS 35.0%
TGCATCAGTTAGAATGTGAT+TGG + Chr7:80537727-80537746 MsG0780040645.01.T01:intron 35.0%
TGCTGTACAGACTACATTAT+TGG - Chr7:80538908-80538927 None:intergenic 35.0%
TGTCTATATGCACGTATTGT+TGG + Chr7:80539794-80539813 MsG0780040645.01.T01:intron 35.0%
TGTTAACTGTTTGCCGAAAT+GGG + Chr7:80537783-80537802 MsG0780040645.01.T01:intron 35.0%
TTAAGAAGCTGTTGAATGAG+TGG + Chr7:80537440-80537459 MsG0780040645.01.T01:intron 35.0%
TTAGCAGAAGAGAGATTTAG+TGG + Chr7:80540737-80540756 MsG0780040645.01.T01:CDS 35.0%
TTGTACTGTACTCTGATTCA+TGG + Chr7:80538722-80538741 MsG0780040645.01.T01:intron 35.0%
TTGTTAACTGTTTGCCGAAA+TGG + Chr7:80537782-80537801 MsG0780040645.01.T01:intron 35.0%
TTTGGAAAGGTGGTGAATTA+TGG + Chr7:80537940-80537959 MsG0780040645.01.T01:intron 35.0%
! GAACTCTTGAAGGATTTTAC+TGG + Chr7:80539993-80540012 MsG0780040645.01.T01:intron 35.0%
! GGTTAATGACATTTTGCCAA+CGG + Chr7:80540642-80540661 MsG0780040645.01.T01:CDS 35.0%
! TAGTGGTGGTGATAATGATA+AGG + Chr7:80537355-80537374 MsG0780040645.01.T01:CDS 35.0%
! TATTTTCACATGGAGAGTGA+AGG + Chr7:80538138-80538157 MsG0780040645.01.T01:intron 35.0%
! TCTAAAGTGAGATGTAGAAC+TGG + Chr7:80539633-80539652 MsG0780040645.01.T01:intron 35.0%
! TGAAGGATTTTACTGGACTT+GGG + Chr7:80540000-80540019 MsG0780040645.01.T01:intron 35.0%
! TTCTGTCATTATGTTTTCGG+AGG + Chr7:80537857-80537876 MsG0780040645.01.T01:intron 35.0%
! TTGAAGGATTTTACTGGACT+TGG + Chr7:80539999-80540018 MsG0780040645.01.T01:intron 35.0%
! TTTTACACAGCAGAACTTCT+TGG - Chr7:80538521-80538540 None:intergenic 35.0%
! TTTTACCTTGCATTTGTGAG+AGG + Chr7:80538197-80538216 MsG0780040645.01.T01:intron 35.0%
! TTTTCGGAGGACTTTTTGTA+TGG + Chr7:80537870-80537889 MsG0780040645.01.T01:intron 35.0%
!! AAGCCTTATTTCACTAAGTG+GGG - Chr7:80539446-80539465 None:intergenic 35.0%
!! AAGGTGGATGAGGTTTTAAT+GGG - Chr7:80538599-80538618 None:intergenic 35.0%
!! AGACTTTTTCCTACACTGAT+TGG + Chr7:80538681-80538700 MsG0780040645.01.T01:intron 35.0%
!! AGGTTTTAACCTTGTTAGAG+TGG + Chr7:80539876-80539895 MsG0780040645.01.T01:intron 35.0%
!! CAAACCACTTTTCTGGTATT+TGG + Chr7:80537668-80537687 MsG0780040645.01.T01:intron 35.0%
!! CAAGCCTTATTTCACTAAGT+GGG - Chr7:80539447-80539466 None:intergenic 35.0%
!! CATTTAGCAAACCACTTTTC+TGG + Chr7:80537661-80537680 MsG0780040645.01.T01:intron 35.0%
!! CGCTAAATATCAATTTGCTG+CGG - Chr7:80540086-80540105 None:intergenic 35.0%
!! CTACAATGGCCTTCATTTTT+AGG + Chr7:80540998-80541017 MsG0780040645.01.T01:three_prime_UTR 35.0%
!! GATTTGTTTCTGTTGGATCT+CGG - Chr7:80536850-80536869 None:intergenic 35.0%
!! TAAGGTGGATGAGGTTTTAA+TGG - Chr7:80538600-80538619 None:intergenic 35.0%
!!! TGAGTTGCGTTTTTTGGATT+TGG - Chr7:80536910-80536929 None:intergenic 35.0%
AAGAACCTATTACACAAGCC+CGG - Chr7:80540145-80540164 None:intergenic 40.0%
AATCACACCACAAAAGCAGA+GGG - Chr7:80538409-80538428 None:intergenic 40.0%
AATGGACCATTATATCAGGC+TGG + Chr7:80540478-80540497 MsG0780040645.01.T01:CDS 40.0%
AGCAGAAGAGAGATTTAGTG+GGG + Chr7:80540739-80540758 MsG0780040645.01.T01:CDS 40.0%
AGCGAAACTTAAAACCAAGG+GGG - Chr7:80540928-80540947 None:intergenic 40.0%
AGGAGCGAAACTTAAAACCA+AGG - Chr7:80540931-80540950 None:intergenic 40.0%
AGGTTCTTCAGGATGACATT+CGG + Chr7:80540402-80540421 MsG0780040645.01.T01:intron 40.0%
AGTTTCGGTAAGCACTACAA+TGG + Chr7:80540984-80541003 MsG0780040645.01.T01:three_prime_UTR 40.0%
ATCAACCTCTCACAAATGCA+AGG - Chr7:80538205-80538224 None:intergenic 40.0%
ATTGCACGGATTCTCAATAC+TGG - Chr7:80540864-80540883 None:intergenic 40.0%
CAAAGCTGGATTGTTTGAAG+TGG + Chr7:80537157-80537176 MsG0780040645.01.T01:CDS 40.0%
CCACTTAGTGAAATAAGGCT+TGG + Chr7:80539445-80539464 MsG0780040645.01.T01:intron 40.0%
CTGCAATGGACCATTATATC+AGG + Chr7:80540474-80540493 MsG0780040645.01.T01:CDS 40.0%
CTGCACTTGAATCTCAATCA+AGG - Chr7:80539038-80539057 None:intergenic 40.0%
CTTATTTCACTAAGTGGGGT+CGG - Chr7:80539442-80539461 None:intergenic 40.0%
GAAAGGTGGTGAATTATGGT+AGG + Chr7:80537944-80537963 MsG0780040645.01.T01:intron 40.0%
GAGCGAAACTTAAAACCAAG+GGG - Chr7:80540929-80540948 None:intergenic 40.0%
GATATGAAATGTGTCAGTGC+TGG + Chr7:80540321-80540340 MsG0780040645.01.T01:intron 40.0%
GATGATTTGAGTGATTGTGG+TGG + Chr7:80537329-80537348 MsG0780040645.01.T01:CDS 40.0%
GGAGCGAAACTTAAAACCAA+GGG - Chr7:80540930-80540949 None:intergenic 40.0%
GGATCTCAAATAACCAGCTA+AGG - Chr7:80540228-80540247 None:intergenic 40.0%
GTTGAAGCAACAATTGGAGT+TGG - Chr7:80538266-80538285 None:intergenic 40.0%
TCAAACTGGTAGCACCAATA+AGG + Chr7:80538636-80538655 MsG0780040645.01.T01:intron 40.0%
TCACAGGTTGTTTGAGAAAC+CGG - Chr7:80537085-80537104 None:intergenic 40.0%
TCATAGTCGTTCCTTTCTAG+TGG + Chr7:80538439-80538458 MsG0780040645.01.T01:intron 40.0%
TGCTGTGCAGACTACATTAT+TGG - Chr7:80538798-80538817 None:intergenic 40.0%
TTACAAGGATAAGGTGGATG+AGG - Chr7:80538609-80538628 None:intergenic 40.0%
TTTGAAGAATTTCTTGCCGC+CGG - Chr7:80536823-80536842 None:intergenic 40.0%
! AAACTAGAGACGTTTTCCAC+TGG + Chr7:80538929-80538948 MsG0780040645.01.T01:intron 40.0%
! ATTATATCAGGCTGGCTATC+GGG + Chr7:80540486-80540505 MsG0780040645.01.T01:CDS 40.0%
! CATTATATCAGGCTGGCTAT+CGG + Chr7:80540485-80540504 MsG0780040645.01.T01:CDS 40.0%
! GGATGACTTCTTGTTTAGGA+AGG - Chr7:80537055-80537074 None:intergenic 40.0%
! GGTTGGTATTCACGAAAGAT+CGG + Chr7:80540538-80540557 MsG0780040645.01.T01:CDS 40.0%
! GTATTCTCAGCCTTGTGAAT+TGG + Chr7:80539567-80539586 MsG0780040645.01.T01:intron 40.0%
! GTGTGATGAGGACAAGATTT+TGG + Chr7:80537412-80537431 MsG0780040645.01.T01:CDS 40.0%
! TGAGAAGCTCTTGCTTTAGA+AGG - Chr7:80536773-80536792 None:intergenic 40.0%
! TTTCTTCTTCGCGGAGTTTT+TGG - Chr7:80536872-80536891 None:intergenic 40.0%
!! AAGGTCACAAGTTTGAGTTG+TGG - Chr7:80538229-80538248 None:intergenic 40.0%
!! AATGCTTAGCTTTGTAGCAG+TGG + Chr7:80539083-80539102 MsG0780040645.01.T01:intron 40.0%
!! ACCCGCTGTTTAAGTTTTGT+AGG + Chr7:80537557-80537576 MsG0780040645.01.T01:intron 40.0%
!! ATGCTTAGCTTTGTAGCAGT+GGG + Chr7:80539084-80539103 MsG0780040645.01.T01:intron 40.0%
!! CCAAGCCTTATTTCACTAAG+TGG - Chr7:80539448-80539467 None:intergenic 40.0%
!! CTGTCTATGTTTTGTTCGTC+GGG - Chr7:80537026-80537045 None:intergenic 40.0%
!! GCTGTCTATGTTTTGTTCGT+CGG - Chr7:80537027-80537046 None:intergenic 40.0%
!! GGATTTTGAGTGATAGGAAG+CGG + Chr7:80537255-80537274 MsG0780040645.01.T01:CDS 40.0%
!! GTTGGTTGATGAGGTTGTTA+CGG - Chr7:80536955-80536974 None:intergenic 40.0%
!! TGTCTATGTTTTGTTCGTCG+GGG - Chr7:80537025-80537044 None:intergenic 40.0%
!! TTTTATCCCCTCTGCTTTTG+TGG + Chr7:80538399-80538418 MsG0780040645.01.T01:intron 40.0%
!!! TAAGGTGAGTTTTGGAAAGG+TGG + Chr7:80537930-80537949 MsG0780040645.01.T01:intron 40.0%
ATAGTAACACCGATAGGCCA+GGG - Chr7:80540518-80540537 None:intergenic 45.0%
ATATTGCGGAGTTGAGGAAG+AGG + Chr7:80537222-80537241 MsG0780040645.01.T01:CDS 45.0%
ATCACACCACAAAAGCAGAG+GGG - Chr7:80538408-80538427 None:intergenic 45.0%
ATGTCTGACACCCATGACAT+AGG - Chr7:80540249-80540268 None:intergenic 45.0%
CACCGTTTACAAGGATAAGG+TGG - Chr7:80538615-80538634 None:intergenic 45.0%
CCAACCATAGTAACACCGAT+AGG - Chr7:80540524-80540543 None:intergenic 45.0%
CGACCCCACTTAGTGAAATA+AGG + Chr7:80539440-80539459 MsG0780040645.01.T01:intron 45.0%
CGATAGCCAGCCTGATATAA+TGG - Chr7:80540487-80540506 None:intergenic 45.0%
CTCAAATAACCAGCTAAGGG+AGG - Chr7:80540224-80540243 None:intergenic 45.0%
CTGTATGAGGCGAGATTATC+TGG + Chr7:80540451-80540470 MsG0780040645.01.T01:CDS 45.0%
CTTGTAAACGGTGCTCAAAC+TGG + Chr7:80538622-80538641 MsG0780040645.01.T01:intron 45.0%
GAATCACACCACAAAAGCAG+AGG - Chr7:80538410-80538429 None:intergenic 45.0%
GAGAATCCGTGCAATGTATG+AGG + Chr7:80540869-80540888 MsG0780040645.01.T01:three_prime_UTR 45.0%
GCAGAAGAGAGATTTAGTGG+GGG + Chr7:80540740-80540759 MsG0780040645.01.T01:CDS 45.0%
GCTCAAATCCTCCACTAGAA+AGG - Chr7:80538453-80538472 None:intergenic 45.0%
GCTGTTGAATGAGTGGAAAC+AGG + Chr7:80537447-80537466 MsG0780040645.01.T01:intron 45.0%
GTTGTTTGAGAAACCGGAGA+CGG - Chr7:80537079-80537098 None:intergenic 45.0%
TATGACCGGGCTTGTGTAAT+AGG + Chr7:80540137-80540156 MsG0780040645.01.T01:intron 45.0%
TCACATGGAGAGTGAAGGAA+AGG + Chr7:80538143-80538162 MsG0780040645.01.T01:intron 45.0%
TGATGGTTGACTGCTGTATG+AGG + Chr7:80540438-80540457 MsG0780040645.01.T01:CDS 45.0%
TGCTGTGCAGACTACCTTAT+TGG - Chr7:80538653-80538672 None:intergenic 45.0%
TGGATGACTCAGTCTATGAC+CGG + Chr7:80540123-80540142 MsG0780040645.01.T01:intron 45.0%
TTTCGATGAGCTGTGTGATG+AGG + Chr7:80537400-80537419 MsG0780040645.01.T01:CDS 45.0%
! AATCAGGACTTAGGAGGCAT+TGG + Chr7:80538334-80538353 MsG0780040645.01.T01:intron 45.0%
! ACTGCTTTAGATGGCAGTGT+CGG - Chr7:80540674-80540693 None:intergenic 45.0%
! CAGTTTGAGCACCGTTTACA+AGG - Chr7:80538624-80538643 None:intergenic 45.0%
! CTTCTTGTTTAGGAAGGACG+AGG - Chr7:80537049-80537068 None:intergenic 45.0%
! GAGCACCGTTTACAAGGATA+AGG - Chr7:80538618-80538637 None:intergenic 45.0%
! GCATGTACTTCAGGTTCTTC+AGG + Chr7:80540391-80540410 MsG0780040645.01.T01:intron 45.0%
! GTGGATAGTGATATGACGGA+AGG + Chr7:80537176-80537195 MsG0780040645.01.T01:CDS 45.0%
! GTTCGCGTTTTTCTTCTTCG+CGG - Chr7:80536881-80536900 None:intergenic 45.0%
! TAGTCGTTCCTTTCTAGTGG+AGG + Chr7:80538442-80538461 MsG0780040645.01.T01:intron 45.0%
! TCCAATTGTTGCTTCAACGC+TGG + Chr7:80538268-80538287 MsG0780040645.01.T01:intron 45.0%
! TCCAGCGTTGAAGCAACAAT+TGG - Chr7:80538272-80538291 None:intergenic 45.0%
!! AGACGGGGATTTTGAGTGAT+AGG + Chr7:80537249-80537268 MsG0780040645.01.T01:CDS 45.0%
!! AGTGATTGTGGTGGATCTAG+TGG + Chr7:80537338-80537357 MsG0780040645.01.T01:CDS 45.0%
!! CCTATCGGTGTTACTATGGT+TGG + Chr7:80540521-80540540 MsG0780040645.01.T01:CDS 45.0%
!! TATGTTTTGTTCGTCGGGGA+GGG - Chr7:80537021-80537040 None:intergenic 45.0%
!! TGCTTAGCTTTGTAGCAGTG+GGG + Chr7:80539085-80539104 MsG0780040645.01.T01:intron 45.0%
!!! GGTGGTTGAGTTGCGTTTTT+TGG - Chr7:80536916-80536935 None:intergenic 45.0%
!!! GTTGGTTTTGTGCGACTAGA+AGG - Chr7:80538248-80538267 None:intergenic 45.0%
ACGATGATGCGAGACTCGAT+CGG + Chr7:80537120-80537139 MsG0780040645.01.T01:CDS 50.0%
AGTCAGTTCAGGCGCAGTTT+CGG + Chr7:80540969-80540988 MsG0780040645.01.T01:three_prime_UTR 50.0%
CAATCCCTAGCCGAAGAAAC+CGG + Chr7:80536801-80536820 MsG0780040645.01.T01:CDS 50.0%
CATAGTAACACCGATAGGCC+AGG - Chr7:80540519-80540538 None:intergenic 50.0%
GAAACAGGAGTTGCGTGAGA+TGG + Chr7:80537462-80537481 MsG0780040645.01.T01:intron 50.0%
GACGGCTAAAGGGAAGTCTA+TGG + Chr7:80537501-80537520 MsG0780040645.01.T01:intron 50.0%
GAGATGTAGAACTGGGCAAC+TGG + Chr7:80539641-80539660 MsG0780040645.01.T01:intron 50.0%
GCATTCTAACCTCCCTTAGC+TGG + Chr7:80540212-80540231 MsG0780040645.01.T01:intron 50.0%
GCGAGATTATCTGGCTGCAA+TGG + Chr7:80540460-80540479 MsG0780040645.01.T01:CDS 50.0%
GGATGACTCAGTCTATGACC+GGG + Chr7:80540124-80540143 MsG0780040645.01.T01:intron 50.0%
GGATGTGGTGCATGTACTTC+AGG + Chr7:80540382-80540401 MsG0780040645.01.T01:intron 50.0%
GTTGAGGAAGAGGCAGAAGA+CGG + Chr7:80537232-80537251 MsG0780040645.01.T01:CDS 50.0%
TCGGCAGGCACTAATGTTGA+TGG + Chr7:80540421-80540440 MsG0780040645.01.T01:CDS 50.0%
TCTTCAGGATGACATTCGGC+AGG + Chr7:80540406-80540425 MsG0780040645.01.T01:CDS 50.0%
TCTTCGCCGAATAACGTCAC+AGG - Chr7:80537101-80537120 None:intergenic 50.0%
TGAGGTTGTTACGGTGGAGA+CGG - Chr7:80536946-80536965 None:intergenic 50.0%
TGCGTGATATTGCGGAGTTG+AGG + Chr7:80537216-80537235 MsG0780040645.01.T01:CDS 50.0%
TTGAGGAAGAGGCAGAAGAC+GGG + Chr7:80537233-80537252 MsG0780040645.01.T01:CDS 50.0%
! CGGCGGATGACTTCTTGTTT+AGG - Chr7:80537059-80537078 None:intergenic 50.0%
! CTGCTTTAGATGGCAGTGTC+GGG - Chr7:80540673-80540692 None:intergenic 50.0%
! TTAAAACCAAGGGGGCGCAA+GGG - Chr7:80540920-80540939 None:intergenic 50.0%
!! CTATGTTTTGTTCGTCGGGG+AGG - Chr7:80537022-80537041 None:intergenic 50.0%
!! CTGGCCTATCGGTGTTACTA+TGG + Chr7:80540517-80540536 MsG0780040645.01.T01:CDS 50.0%
!! GATTGTGGTGGATCTAGTGG+TGG + Chr7:80537341-80537360 MsG0780040645.01.T01:CDS 50.0%
!! GGTTGATGAGGTTGTTACGG+TGG - Chr7:80536952-80536971 None:intergenic 50.0%
!! TTTCTTGCCGCCGGTTTCTT+CGG - Chr7:80536814-80536833 None:intergenic 50.0%
AAGAAGTCATCCGCCGTCTC+CGG + Chr7:80537063-80537082 MsG0780040645.01.T01:CDS 55.0%
ACAGGAGTTGCGTGAGATGG+CGG + Chr7:80537465-80537484 MsG0780040645.01.T01:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - Chr7:80539434-80539453 None:intergenic 55.0%
AGTCGTCTGAGGAGAGGCTT+AGG + Chr7:80540768-80540787 MsG0780040645.01.T01:CDS 55.0%
CCAAGAGGGCCACTCTAACA+AGG - Chr7:80539888-80539907 None:intergenic 55.0%
CCTCTCCTCAGACGACTGAT+GGG - Chr7:80540765-80540784 None:intergenic 55.0%
CCTTGTTAGAGTGGCCCTCT+TGG + Chr7:80539885-80539904 MsG0780040645.01.T01:intron 55.0%
CGGTTTCTTCGGCTAGGGAT+TGG - Chr7:80536803-80536822 None:intergenic 55.0%
GAGTGATAGGAAGCGGCAGA+AGG + Chr7:80537262-80537281 MsG0780040645.01.T01:CDS 55.0%
GTATCGCGCACACTGCTTGA+AGG - Chr7:80537533-80537552 None:intergenic 55.0%
GTTTGAGAAACCGGAGACGG+CGG - Chr7:80537076-80537095 None:intergenic 55.0%
TGAGGAAGAGGCAGAAGACG+GGG + Chr7:80537234-80537253 MsG0780040645.01.T01:CDS 55.0%
TGATAGGAAGCGGCAGAAGG+CGG + Chr7:80537265-80537284 MsG0780040645.01.T01:CDS 55.0%
TGGGCAACTGGCGAACATCT+GGG + Chr7:80539653-80539672 MsG0780040645.01.T01:intron 55.0%
TGTTACGGTGGAGACGGTGT+CGG - Chr7:80536940-80536959 None:intergenic 55.0%
! CTTAAAACCAAGGGGGCGCA+AGG - Chr7:80540921-80540940 None:intergenic 55.0%
!! GGAGGAAGCGTTGGTTGATG+AGG - Chr7:80536964-80536983 None:intergenic 55.0%
ACGGAGAAGCGGACGGCTAA+AGG + Chr7:80537490-80537509 MsG0780040645.01.T01:intron 60.0%
CGCTGGAGAGAACTGCAGAC+CGG + Chr7:80538285-80538304 MsG0780040645.01.T01:intron 60.0%
CGGAGAAGCGGACGGCTAAA+GGG + Chr7:80537491-80537510 MsG0780040645.01.T01:intron 60.0%
CTGGGCAACTGGCGAACATC+TGG + Chr7:80539652-80539671 MsG0780040645.01.T01:intron 60.0%
GCCTCTCCTCAGACGACTGA+TGG - Chr7:80540766-80540785 None:intergenic 60.0%
GGCAACTGGCGAACATCTGG+GGG + Chr7:80539655-80539674 MsG0780040645.01.T01:intron 60.0%
GGGAATGCTCCCTGGCCTAT+CGG + Chr7:80540506-80540525 MsG0780040645.01.T01:CDS 60.0%
GGGCAACTGGCGAACATCTG+GGG + Chr7:80539654-80539673 MsG0780040645.01.T01:intron 60.0%
TCCCTAGCCGAAGAAACCGG+CGG + Chr7:80536804-80536823 MsG0780040645.01.T01:CDS 60.0%
TGGCTATCGGGAATGCTCCC+TGG + Chr7:80540498-80540517 MsG0780040645.01.T01:CDS 60.0%
! GGTGACGAAGGAGGAAGCGT+TGG - Chr7:80536973-80536992 None:intergenic 60.0%
!! AGATGGCGGAGACGGAGAAG+CGG + Chr7:80537479-80537498 MsG0780040645.01.T01:intron 60.0%
!! GAGGATGGTGATGGTGGTGC+TGG + Chr7:80537302-80537321 MsG0780040645.01.T01:CDS 60.0%
!! GAGGATGGTGCTGCTGAGGA+TGG + Chr7:80537287-80537306 MsG0780040645.01.T01:CDS 60.0%
!! GCTGCTGAGGATGGTGATGG+TGG + Chr7:80537296-80537315 MsG0780040645.01.T01:CDS 60.0%
!! GGAAGCGCTGGATGAAGCAG+CGG - Chr7:80537000-80537019 None:intergenic 60.0%
!! GGTGCTGCTGAGGATGGTGA+TGG + Chr7:80537293-80537312 MsG0780040645.01.T01:CDS 60.0%
!! GTTGCGTGAGATGGCGGAGA+CGG + Chr7:80537471-80537490 MsG0780040645.01.T01:intron 60.0%
AAGCGGCAGAAGGCGGAGGA+TGG + Chr7:80537272-80537291 MsG0780040645.01.T01:CDS 65.0%
ACTGGCGAACATCTGGGGGC+AGG + Chr7:80539659-80539678 MsG0780040645.01.T01:intron 65.0%
CTGGCGAACATCTGGGGGCA+GGG + Chr7:80539660-80539679 MsG0780040645.01.T01:intron 65.0%
TAGGAAGCGGCAGAAGGCGG+AGG + Chr7:80537268-80537287 MsG0780040645.01.T01:CDS 65.0%
TGGCGAACATCTGGGGGCAG+GGG + Chr7:80539661-80539680 MsG0780040645.01.T01:intron 65.0%
! AGCGCTGGATGAAGCAGCGG+CGG - Chr7:80536997-80537016 None:intergenic 65.0%
! GCAGTGTCGGGTAACGCCGT+TGG - Chr7:80540661-80540680 None:intergenic 65.0%
! TACGGTGGAGACGGTGTCGG+AGG - Chr7:80536937-80536956 None:intergenic 65.0%
!! GCCGCCGGTTTCTTCGGCTA+GGG - Chr7:80536808-80536827 None:intergenic 65.0%
!! TGCCGCCGGTTTCTTCGGCT+AGG - Chr7:80536809-80536828 None:intergenic 65.0%
AGCAGCGGCGGAGGTGACGA+AGG - Chr7:80536985-80537004 None:intergenic 70.0%
AGCGGCGGAGGTGACGAAGG+AGG - Chr7:80536982-80537001 None:intergenic 70.0%
ATGCAGCCCTTGCGCCCCCT+TGG + Chr7:80540911-80540930 MsG0780040645.01.T01:three_prime_UTR 70.0%
GCTGGATGAAGCAGCGGCGG+AGG - Chr7:80536994-80537013 None:intergenic 70.0%
GGCGGAGACGGAGAAGCGGA+CGG + Chr7:80537483-80537502 MsG0780040645.01.T01:intron 70.0%
! GGTGGAGACGGTGTCGGAGG+TGG - Chr7:80536934-80536953 None:intergenic 70.0%
! TTCGTCGGGGAGGGAAGCGC+TGG - Chr7:80537012-80537031 None:intergenic 70.0%
!! GGCGGAGGATGGTGCTGCTG+AGG + Chr7:80537283-80537302 MsG0780040645.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 80536765 80541095 80536765 ID=MsG0780040645.01;Name=MsG0780040645.01
Chr7 mRNA 80536765 80541095 80536765 ID=MsG0780040645.01.T01;Parent=MsG0780040645.01;Name=MsG0780040645.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0.5|1|1|1|2|278|360
Chr7 exon 80536765 80537433 80536765 ID=MsG0780040645.01.T01:exon:18584;Parent=MsG0780040645.01.T01
Chr7 exon 80540404 80541095 80540404 ID=MsG0780040645.01.T01:exon:18585;Parent=MsG0780040645.01.T01
Chr7 CDS 80536765 80537433 80536765 ID=MsG0780040645.01.T01:cds;Parent=MsG0780040645.01.T01
Chr7 CDS 80540404 80540817 80540404 ID=MsG0780040645.01.T01:cds;Parent=MsG0780040645.01.T01
Chr7 three_prime_UTR 80540818 80541095 80540818 ID=MsG0780040645.01.T01:three_prime_utr;Parent=MsG0780040645.01.T01
Gene Sequence

>MsG0780040645.01.T01

ATGGACCTTCTAAAGCAAGAGCTTCTCAAAAAACGCCAATCCCTAGCCGAAGAAACCGGCGGCAAGAAATTCTTCAAACGCTCCGAGATCCAACAGAAACAAATCCAAAAACTCCGCGAAGAAGAAAAACGCGAACTCGAAGCCAAATCCAAAAAACGCAACTCAACCACCTCCGACACCGTCTCCACCGTAACAACCTCATCAACCAACGCTTCCTCCTTCGTCACCTCCGCCGCTGCTTCATCCAGCGCTTCCCTCCCCGACGAACAAAACATAGACAGCCTCGTCCTTCCTAAACAAGAAGTCATCCGCCGTCTCCGGTTTCTCAAACAACCTGTGACGTTATTCGGCGAAGACGATGATGCGAGACTCGATCGGCTTAAATACGTTCTCAAAGCTGGATTGTTTGAAGTGGATAGTGATATGACGGAAGGACAGACGAATGATTTCTTGCGTGATATTGCGGAGTTGAGGAAGAGGCAGAAGACGGGGATTTTGAGTGATAGGAAGCGGCAGAAGGCGGAGGATGGTGCTGCTGAGGATGGTGATGGTGGTGCTGGTGATGATGATTTGAGTGATTGTGGTGGATCTAGTGGTGGTGATAATGATAAGGATTTGAAAAGGATGAAGGCGAATTTCGATGAGCTGTGTGATGAGGACAAGATTTTGGTTCTTCAGGATGACATTCGGCAGGCACTAATGTTGATGGTTGACTGCTGTATGAGGCGAGATTATCTGGCTGCAATGGACCATTATATCAGGCTGGCTATCGGGAATGCTCCCTGGCCTATCGGTGTTACTATGGTTGGTATTCACGAAAGATCGGCCCGTGAAAAGATCTACACAAATAGTGTTGCTCACATCATGAATGATGAAACAACTCGTAAGTACTTACAATCAGTGAAGAGGTTAATGACATTTTGCCAACGGCGTTACCCGACACTGCCATCTAAAGCAGTTGAGTTTAACAGTTTGGCAAATGGGAGTGATCTGCAGTCACTTTTAGCAGAAGAGAGATTTAGTGGGGGCAATCAGTCGTCTGAGGAGAGGCTTAGGATAATGCCTGCTCCAAGAGATAGTTAA
Protein sequence

>MsG0780040645.01.T01

MDLLKQELLKKRQSLAEETGGKKFFKRSEIQQKQIQKLREEEKRELEAKSKKRNSTTSDTVSTVTTSSTNASSFVTSAAASSSASLPDEQNIDSLVLPKQEVIRRLRFLKQPVTLFGEDDDARLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELRKRQKTGILSDRKRQKAEDGAAEDGDGGAGDDDLSDCGGSSGGDNDKDLKRMKANFDELCDEDKILVLQDDIRQALMLMVDCCMRRDYLAAMDHYIRLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTLPSKAVEFNSLANGSDLQSLLAEERFSGGNQSSEERLRIMPAPRDS*