AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011457.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011457.01.T01 MTR_2g104910 58.303 271 62 6 1 268 1 223 1.18e-92 273
MsG0280011457.01.T01 MTR_2g104910 63.362 232 61 5 40 268 2 212 7.03e-90 265
MsG0280011457.01.T01 MTR_4g006570 57.025 242 76 6 32 268 32 250 4.86e-77 234
MsG0280011457.01.T01 MTR_4g006570 56.485 239 76 6 35 268 26 241 1.88e-75 230
MsG0280011457.01.T01 MTR_4g006570 52.364 275 74 8 1 268 1 225 2.59e-75 229
MsG0280011457.01.T01 MTR_4g006570 56.485 239 76 6 35 268 40 255 2.97e-75 230
MsG0280011457.01.T01 MTR_4g006570 54.709 223 73 6 51 268 1 200 9.53e-67 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011457.01.T01 AT1G15880 50.435 230 95 3 39 268 13 223 2.82e-63 198

Find 67 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGTATACTTGTCTATTA+TGG 0.153434 2:-84280939 MsG0280011457.01.T01:three_prime_UTR
TGATGGATGCACGCTCTTTA+AGG 0.233741 2:+84281816 None:intergenic
GTCTTCCAGCGTTCGACTTT+TGG 0.265092 2:-84281435 MsG0280011457.01.T01:CDS
ATTGTATACTTGTCTATTAT+GGG 0.266472 2:-84280938 MsG0280011457.01.T01:three_prime_UTR
TGATCGAACAAGATTAGATT+TGG 0.341869 2:-84281869 MsG0280011457.01.T01:CDS
TGAGATCTTGATAAATTTCT+TGG 0.346054 2:+84282855 None:intergenic
CAATAAACATCATCTTTACT+TGG 0.366621 2:+84280991 None:intergenic
GTAATGCATTGTTTGATTGC+TGG 0.385471 2:-84280908 MsG0280011457.01.T01:three_prime_UTR
ATGTGTTACAATTCATAGTT+CGG 0.390079 2:-84280810 MsG0280011457.01.T01:three_prime_UTR
TGTTTATTGTGTTGGTAGCT+TGG 0.396853 2:-84280977 MsG0280011457.01.T01:three_prime_UTR
GTCCTCTGGTGGGTCTGAAA+TGG 0.402834 2:-84282900 MsG0280011457.01.T01:CDS
TTGGGATTCCCTTCGCAAAC+AGG 0.411483 2:-84285168 MsG0280011457.01.T01:intron
CAGGCTTGGGTGTCCTCTGG+TGG 0.415447 2:-84282911 MsG0280011457.01.T01:CDS
ACCATTATACTTGCCCTTGT+GGG 0.423765 2:-84281051 MsG0280011457.01.T01:CDS
ACCCACAAGGGCAAGTATAA+TGG 0.431473 2:+84281050 None:intergenic
ATCCATGGAGGTTCAAAGTT+GGG 0.434741 2:-84285186 MsG0280011457.01.T01:exon
ATGCAGGCTTGGGTGTCCTC+TGG 0.438772 2:-84282914 MsG0280011457.01.T01:CDS
AGCTCAGTTGGATGAGCAAA+TGG 0.441426 2:-84283053 MsG0280011457.01.T01:CDS
TTCACAAATTAATCTTTACT+AGG 0.448626 2:+84280863 None:intergenic
AACAAGATTAGATTTGGAAG+AGG 0.457292 2:-84281863 MsG0280011457.01.T01:CDS
TACCATTATACTTGCCCTTG+TGG 0.457545 2:-84281052 MsG0280011457.01.T01:CDS
TCAACGAAAGCTTCTACAAA+AGG 0.463049 2:-84283010 MsG0280011457.01.T01:CDS
CAGAGAGTGATCTGGAGTCT+TGG 0.464648 2:-84282979 MsG0280011457.01.T01:CDS
TGAGGCAACAGAGAGTGATC+TGG 0.471531 2:-84282987 MsG0280011457.01.T01:CDS
TAAACTCACAGATGCAGGCT+TGG 0.471681 2:-84282925 MsG0280011457.01.T01:CDS
AAACTCACAGATGCAGGCTT+GGG 0.480195 2:-84282924 MsG0280011457.01.T01:CDS
CTGTCCTGTACTGCGGCTGA+TGG 0.485234 2:+84281799 None:intergenic
AAAGATGATGTTTATTGTGT+TGG 0.505371 2:-84280985 MsG0280011457.01.T01:three_prime_UTR
CATCCATGGAGGTTCAAAGT+TGG 0.506812 2:-84285187 MsG0280011457.01.T01:exon
ACAAGTAAACTCACAGATGC+AGG 0.514539 2:-84282930 MsG0280011457.01.T01:CDS
AGGCTTGGGTGTCCTCTGGT+GGG 0.515681 2:-84282910 MsG0280011457.01.T01:CDS
GTCTGTGGCGTGTGAACAGA+CGG 0.519084 2:-84285241 MsG0280011457.01.T01:five_prime_UTR
TTGTATACTTGTCTATTATG+GGG 0.525930 2:-84280937 MsG0280011457.01.T01:three_prime_UTR
GCATCCATCAGCCGCAGTAC+AGG 0.527799 2:-84281803 MsG0280011457.01.T01:CDS
AAGCTCATACGATGTATACC+TGG 0.528340 2:+84282831 None:intergenic
AAGAAAACTTGAAGCTCAGT+TGG 0.529386 2:-84283065 MsG0280011457.01.T01:CDS
GTTTATTCTTGTACTGCAGA+TGG 0.529780 2:-84281499 MsG0280011457.01.T01:CDS
AGATTAGATTTGGAAGAGGG+TGG 0.530846 2:-84281859 MsG0280011457.01.T01:CDS
AGAAATGAAAATTGAAGAAG+CGG 0.531407 2:-84285274 MsG0280011457.01.T01:five_prime_UTR
CAACTTTGAACCTCCATGGA+TGG 0.538871 2:+84285188 None:intergenic
CATCAGCCGCAGTACAGGAC+AGG 0.540958 2:-84281798 MsG0280011457.01.T01:intron
AGCGGTGTGGTCGTCGTCTG+TGG 0.544478 2:-84285256 MsG0280011457.01.T01:five_prime_UTR
ATCCCAACTTTGAACCTCCA+TGG 0.546573 2:+84285184 None:intergenic
ATGCATTGTTTGATTGCTGG+TGG 0.554948 2:-84280905 MsG0280011457.01.T01:three_prime_UTR
TGTATACTTGTCTATTATGG+GGG 0.555133 2:-84280936 MsG0280011457.01.T01:three_prime_UTR
GCTTAGCTCTAAGATTAGAC+CGG 0.556599 2:+84281929 None:intergenic
AATTGAAACCTGTTTGCGAA+GGG 0.560013 2:+84285160 None:intergenic
ACAAGATTAGATTTGGAAGA+GGG 0.565048 2:-84281862 MsG0280011457.01.T01:CDS
AAATTGAAACCTGTTTGCGA+AGG 0.567814 2:+84285159 None:intergenic
CTAACCATCTCATCCATCCA+TGG 0.579099 2:-84285201 MsG0280011457.01.T01:exon
GGCATACTAATAGGAAACAA+AGG 0.600280 2:+84284020 None:intergenic
TCCCACCAAAAGTCGAACGC+TGG 0.611928 2:+84281430 None:intergenic
CGTGAGCAGTCGCCTCCCAA+CGG 0.616247 2:-84281388 MsG0280011457.01.T01:intron
ACCTCCATGGATGGATGAGA+TGG 0.623902 2:+84285197 None:intergenic
GTATACTTGTCTATTATGGG+GGG 0.624761 2:-84280935 MsG0280011457.01.T01:three_prime_UTR
TGGATGCACGCTCTTTAAGG+AGG 0.630188 2:+84281819 None:intergenic
AGCTCATACGATGTATACCT+GGG 0.631202 2:+84282832 None:intergenic
TCACAAGCACAAGCAACACT+CGG 0.631705 2:-84281465 MsG0280011457.01.T01:CDS
TGAAAATTGAAGAAGCGGTG+TGG 0.662471 2:-84285269 MsG0280011457.01.T01:five_prime_UTR
GAAAGCTTCTACAAAAGGTG+AGG 0.666826 2:-84283005 MsG0280011457.01.T01:CDS
ACAGCAATCATACCGTTGGG+AGG 0.674625 2:+84281376 None:intergenic
AAATGCATACGGACCCACAA+GGG 0.680653 2:+84281038 None:intergenic
AAAATGCATACGGACCCACA+AGG 0.689785 2:+84281037 None:intergenic
AACCATTTCAGACCCACCAG+AGG 0.691979 2:+84282898 None:intergenic
TAACAACCTGTCCTGTACTG+CGG 0.715310 2:+84281792 None:intergenic
ACCATCTCATCCATCCATGG+AGG 0.728976 2:-84285198 MsG0280011457.01.T01:exon
AATTTATCAAGATCTCACCC+AGG 0.754080 2:-84282849 MsG0280011457.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATGATAAATGAAA+AGG + Chr2:84283428-84283447 None:intergenic 10.0%
!! GTTATAATAAATAATGTTAT+AGG + Chr2:84283924-84283943 None:intergenic 10.0%
!! GTTTAAATAAATATTGAATA+AGG - Chr2:84284733-84284752 MsG0280011457.01.T01:intron 10.0%
!! TATAATAAATAATGTTATAG+GGG + Chr2:84283922-84283941 None:intergenic 10.0%
!!! AAGCTTATATATAATTTTAT+AGG + Chr2:84284413-84284432 None:intergenic 10.0%
!!! ATCATTTTTCAAATAATTAT+TGG + Chr2:84281254-84281273 None:intergenic 10.0%
!!! CAAAAATATTTGAAATATAA+AGG + Chr2:84284066-84284085 None:intergenic 10.0%
!!! TAAAATTCAAAAGTATATAT+GGG - Chr2:84280981-84281000 MsG0280011457.01.T01:three_prime_UTR 10.0%
!! ATGTAACAGTTAATAAATAA+TGG + Chr2:84283966-84283985 None:intergenic 15.0%
!!! GTAAAATTCAAAAGTATATA+TGG - Chr2:84280980-84280999 MsG0280011457.01.T01:three_prime_UTR 15.0%
!!! TTTATCACTTTTTAATCTAA+TGG - Chr2:84281517-84281536 MsG0280011457.01.T01:CDS 15.0%
!!! TTTTTTTTTTCTTTCTTGAA+GGG - Chr2:84282892-84282911 MsG0280011457.01.T01:CDS 15.0%
!!! TTTTTTTTTTTCTTTCTTGA+AGG - Chr2:84282891-84282910 MsG0280011457.01.T01:CDS 15.0%
!! ACATTGGAATTGAAATAAAA+GGG + Chr2:84283860-84283879 None:intergenic 20.0%
!! AGGTCAAGTATAAATTTATT+AGG + Chr2:84283465-84283484 None:intergenic 20.0%
!! ATTGTATACTTGTCTATTAT+GGG - Chr2:84285144-84285163 MsG0280011457.01.T01:intron 20.0%
!! GAAAATAAGAAAAATGCATA+CGG + Chr2:84285058-84285077 None:intergenic 20.0%
!! TATTGTATACTTGTCTATTA+TGG - Chr2:84285143-84285162 MsG0280011457.01.T01:intron 20.0%
!! TTAATGAGTTTGATATATGA+TGG + Chr2:84281817-84281836 None:intergenic 20.0%
!! TTCACAAATTAATCTTTACT+AGG + Chr2:84285222-84285241 None:intergenic 20.0%
!! TTTAAATACATCTAACAAGT+TGG + Chr2:84284113-84284132 None:intergenic 20.0%
!!! AAAAACTTGCTTTTGAAAAA+GGG + Chr2:84282334-84282353 None:intergenic 20.0%
!!! AATGGTTTTATATCGTAAAT+TGG - Chr2:84283047-84283066 MsG0280011457.01.T01:CDS 20.0%
!!! ATCAAGTAATTTTGTTGAAT+TGG - Chr2:84282868-84282887 MsG0280011457.01.T01:CDS 20.0%
!!! CTATGTTCTTTTTGTTATTT+TGG - Chr2:84282140-84282159 MsG0280011457.01.T01:intron 20.0%
!!! TAAGCAAAAAACTACTTTTA+AGG + Chr2:84282497-84282516 None:intergenic 20.0%
!!! TGCAATTTGTGTTTTAAAAA+AGG + Chr2:84283592-84283611 None:intergenic 20.0%
!!! TTAATGTTTTATTTGGTTGT+CGG - Chr2:84281044-84281063 MsG0280011457.01.T01:CDS 20.0%
!!! TTTTTCTTATTTTCATCTAC+TGG - Chr2:84285064-84285083 MsG0280011457.01.T01:intron 20.0%
! AAAAGACGACTTAAAGTTTA+TGG - Chr2:84282698-84282717 MsG0280011457.01.T01:intron 25.0%
! AAACAGTTTGAATTCTATAG+TGG + Chr2:84281500-84281519 None:intergenic 25.0%
! AAACTTCAAATGAACATTCA+AGG + Chr2:84284510-84284529 None:intergenic 25.0%
! AAAGATGATGTTTATTGTGT+TGG - Chr2:84285097-84285116 MsG0280011457.01.T01:intron 25.0%
! AACCTATAAACCATATCAAA+AGG + Chr2:84281089-84281108 None:intergenic 25.0%
! ACCTATAAACCATATCAAAA+GGG + Chr2:84281088-84281107 None:intergenic 25.0%
! AGAAATGAAAATTGAAGAAG+CGG - Chr2:84280808-84280827 MsG0280011457.01.T01:three_prime_UTR 25.0%
! AGATCAAATAATCAAGATGA+CGG - Chr2:84282565-84282584 MsG0280011457.01.T01:intron 25.0%
! ATGTGTTACAATTCATAGTT+CGG - Chr2:84285272-84285291 MsG0280011457.01.T01:five_prime_UTR 25.0%
! CAAATGTCTGATATTAAAGA+TGG + Chr2:84284465-84284484 None:intergenic 25.0%
! CAATAAACATCATCTTTACT+TGG + Chr2:84285094-84285113 None:intergenic 25.0%
! CATAATACTATATACACCAA+AGG + Chr2:84282028-84282047 None:intergenic 25.0%
! CATATTATATCATGTAGTTG+TGG - Chr2:84283303-84283322 MsG0280011457.01.T01:intron 25.0%
! GAAAAAATAATCCATTAGCT+TGG + Chr2:84284488-84284507 None:intergenic 25.0%
! GACATTGGAATTGAAATAAA+AGG + Chr2:84283861-84283880 None:intergenic 25.0%
! GCATAATACTATATACACAA+AGG + Chr2:84282086-84282105 None:intergenic 25.0%
! TAAAACTTGTGTAGTAGAAA+TGG + Chr2:84284920-84284939 None:intergenic 25.0%
! TGAGATCTTGATAAATTTCT+TGG + Chr2:84283230-84283249 None:intergenic 25.0%
! TTGTATACTTGTCTATTATG+GGG - Chr2:84285145-84285164 MsG0280011457.01.T01:intron 25.0%
! TTTCAATTCCAATGTCTTAT+AGG - Chr2:84283865-84283884 MsG0280011457.01.T01:intron 25.0%
!! AGGTTTAGTTTAAATAAGAG+TGG + Chr2:84283734-84283753 None:intergenic 25.0%
!! GGTTTAGTTTAAATAAGAGT+GGG + Chr2:84283733-84283752 None:intergenic 25.0%
!! GTCTTTTATCTGTATTATGA+CGG + Chr2:84282685-84282704 None:intergenic 25.0%
!! GTTAGATGTATTTAAAATGC+AGG - Chr2:84284117-84284136 MsG0280011457.01.T01:intron 25.0%
!! GTTTAGTTTAAATAAGAGTG+GGG + Chr2:84283732-84283751 None:intergenic 25.0%
!! TGATATATGATGGAACATTA+TGG + Chr2:84281807-84281826 None:intergenic 25.0%
!! TTTAGTTTAAATAAGAGTGG+GGG + Chr2:84283731-84283750 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG - Chr2:84282507-84282526 MsG0280011457.01.T01:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + Chr2:84282526-84282507 None:intergenic 25.0%
!! TTTTTGTAGAATCTCTATCA+CGG - Chr2:84282349-84282368 MsG0280011457.01.T01:intron 25.0%
!!! ACACAAGTTTTATTTCTCTA+TGG - Chr2:84284928-84284947 MsG0280011457.01.T01:intron 25.0%
!!! ATGACATGATTTTGACATTT+TGG - Chr2:84281164-84281183 MsG0280011457.01.T01:intron 25.0%
!!! ATTATTTTAAATACTCCCTC+CGG + Chr2:84282529-84282548 None:intergenic 25.0%
!!! CAAAAACTTGCTTTTGAAAA+AGG + Chr2:84282335-84282354 None:intergenic 25.0%
!!! GCATAGTTCAAGTTAATTTT+AGG - Chr2:84282917-84282936 MsG0280011457.01.T01:CDS 25.0%
!!! TAAGCAAAAAACTACTTTTG+AGG - Chr2:84282408-84282427 MsG0280011457.01.T01:intron 25.0%
!!! TATAGGTTTTGAGAATTTTC+TGG - Chr2:84281101-84281120 MsG0280011457.01.T01:intron 25.0%
!!! TATAGTTTTGAGTGATGAAT+TGG - Chr2:84281140-84281159 MsG0280011457.01.T01:intron 25.0%
!!! TGACATGATTTTGACATTTT+GGG - Chr2:84281165-84281184 MsG0280011457.01.T01:intron 25.0%
!!! TTAAAATGCAGGAGTTTTAT+CGG - Chr2:84284128-84284147 MsG0280011457.01.T01:intron 25.0%
AACAAGATTAGATTTGGAAG+AGG - Chr2:84284219-84284238 MsG0280011457.01.T01:intron 30.0%
AATAAAGCGAAAAAAGTCGA+TGG - Chr2:84285006-84285025 MsG0280011457.01.T01:intron 30.0%
AATGACATCCTATAAGACAT+TGG + Chr2:84283876-84283895 None:intergenic 30.0%
AATTGCCAGTTAGAACAATT+AGG + Chr2:84283778-84283797 None:intergenic 30.0%
ACAAGATTAGATTTGGAAGA+GGG - Chr2:84284220-84284239 MsG0280011457.01.T01:intron 30.0%
ACAGAAAAACCAAGTTATAC+AGG + Chr2:84282801-84282820 None:intergenic 30.0%
ACCTGGATAAAAGATTGATT+CGG - Chr2:84281924-84281943 MsG0280011457.01.T01:CDS 30.0%
ATAAAGAACCCTTTACATCA+GGG + Chr2:84283370-84283389 None:intergenic 30.0%
ATATGAAAGTCTAACATGAG+AGG - Chr2:84281669-84281688 MsG0280011457.01.T01:intron 30.0%
ATATGCTCACACATAATGAT+TGG + Chr2:84283288-84283307 None:intergenic 30.0%
CATTGAATGAATGATGTATG+TGG - Chr2:84282433-84282452 MsG0280011457.01.T01:intron 30.0%
CTATGGTGTTTGTTTAATGA+CGG - Chr2:84284945-84284964 MsG0280011457.01.T01:intron 30.0%
TAGCAAAAACCTGTATAACT+TGG - Chr2:84282789-84282808 MsG0280011457.01.T01:intron 30.0%
TATGCTCACACATAATGATT+GGG + Chr2:84283287-84283306 None:intergenic 30.0%
TCAACTTCAGAATCAAAACA+GGG + Chr2:84283627-84283646 None:intergenic 30.0%
TCAATTTCTGCATATGCATT+CGG - Chr2:84281896-84281915 MsG0280011457.01.T01:CDS 30.0%
TCTGATATTAAAGATGGCAT+TGG + Chr2:84284459-84284478 None:intergenic 30.0%
TGATCGAACAAGATTAGATT+TGG - Chr2:84284213-84284232 MsG0280011457.01.T01:intron 30.0%
TGCTTAGAAAACAAGTTTGT+AGG - Chr2:84281440-84281459 MsG0280011457.01.T01:CDS 30.0%
TGGAATATTAGTTATTCTCC+TGG + Chr2:84284900-84284919 None:intergenic 30.0%
TGTATACTTGTCTATTATGG+GGG - Chr2:84285146-84285165 MsG0280011457.01.T01:intron 30.0%
TGTTAGACTTTCATATGACA+AGG + Chr2:84281665-84281684 None:intergenic 30.0%
TTCCTATTAGTATATGCCTT+TGG - Chr2:84282009-84282028 MsG0280011457.01.T01:intron 30.0%
TTGGAATTGAAATAAAAGGG+TGG + Chr2:84283857-84283876 None:intergenic 30.0%
! ACCCTTTTGATATGGTTTAT+AGG - Chr2:84281084-84281103 MsG0280011457.01.T01:CDS 30.0%
! ATACACAAAGGCATACTAAT+AGG + Chr2:84282074-84282093 None:intergenic 30.0%
! ATATTCTGATGTTTTACGTG+TGG - Chr2:84281582-84281601 MsG0280011457.01.T01:intron 30.0%
! TACTTTTAATCTTCTCCATC+AGG - Chr2:84283985-84284004 MsG0280011457.01.T01:intron 30.0%
! TTGTCTTTTTAACCTTTTGC+AGG - Chr2:84282993-84283012 MsG0280011457.01.T01:CDS 30.0%
! TTTTATCAAGATTGTTCCAC+TGG - Chr2:84284346-84284365 MsG0280011457.01.T01:intron 30.0%
!! TTGACTAGTTTCTGATGATA+GGG - Chr2:84281376-84281395 MsG0280011457.01.T01:intron 30.0%
!! TTTGACTAGTTTCTGATGAT+AGG - Chr2:84281375-84281394 MsG0280011457.01.T01:intron 30.0%
!!! CTGAAGTTTTTTTTTTGTCC+AGG - Chr2:84284879-84284898 MsG0280011457.01.T01:intron 30.0%
!!! GAGAATTCTTTTGAAACTGA+AGG + Chr2:84283485-84283504 None:intergenic 30.0%
AAATTGAAACCTGTTTGCGA+AGG + Chr2:84280926-84280945 None:intergenic 35.0%
AACATGAGAGGATTCATTCT+CGG - Chr2:84281681-84281700 MsG0280011457.01.T01:intron 35.0%
AAGAAAACTTGAAGCTCAGT+TGG - Chr2:84283017-84283036 MsG0280011457.01.T01:CDS 35.0%
AATCATCTTGATCAGACTTC+TGG - Chr2:84282620-84282639 MsG0280011457.01.T01:intron 35.0%
AATTGAAACCTGTTTGCGAA+GGG + Chr2:84280925-84280944 None:intergenic 35.0%
AATTTATCAAGATCTCACCC+AGG - Chr2:84283233-84283252 MsG0280011457.01.T01:intron 35.0%
AGTCACCTAATTGTTCTAAC+TGG - Chr2:84283770-84283789 MsG0280011457.01.T01:intron 35.0%
ATGCTCACACATAATGATTG+GGG + Chr2:84283286-84283305 None:intergenic 35.0%
ATTGATGTACAAATCACTCG+AGG + Chr2:84281881-84281900 None:intergenic 35.0%
CATAAAGAACCCTTTACATC+AGG + Chr2:84283371-84283390 None:intergenic 35.0%
CATATACAGCAACATAAGTG+GGG - Chr2:84281758-84281777 MsG0280011457.01.T01:intron 35.0%
CATTGAATGAGTGATGTATG+TGG + Chr2:84282472-84282491 None:intergenic 35.0%
GCATATACAGCAACATAAGT+GGG - Chr2:84281757-84281776 MsG0280011457.01.T01:intron 35.0%
GGCATACTAATAGGAAACAA+AGG + Chr2:84282065-84282084 None:intergenic 35.0%
GGGCTATAAATTCTGATCTT+TGG - Chr2:84281397-84281416 MsG0280011457.01.T01:CDS 35.0%
GTAATGCATTGTTTGATTGC+TGG - Chr2:84285174-84285193 MsG0280011457.01.T01:CDS 35.0%
GTATACTTGTCTATTATGGG+GGG - Chr2:84285147-84285166 MsG0280011457.01.T01:intron 35.0%
GTCAACTTCAGAATCAAAAC+AGG + Chr2:84283628-84283647 None:intergenic 35.0%
GTTCTTTATGATAGCTGAGA+AGG - Chr2:84283381-84283400 MsG0280011457.01.T01:intron 35.0%
GTTTATTCTTGTACTGCAGA+TGG - Chr2:84284583-84284602 MsG0280011457.01.T01:intron 35.0%
TATGGGTTTGTGTAATTCAG+AGG - Chr2:84280998-84281017 MsG0280011457.01.T01:exon 35.0%
TCAACGAAAGCTTCTACAAA+AGG - Chr2:84283072-84283091 MsG0280011457.01.T01:CDS 35.0%
TCATAACTCATACAGTCATC+AGG + Chr2:84282244-84282263 None:intergenic 35.0%
TGCATATACAGCAACATAAG+TGG - Chr2:84281756-84281775 MsG0280011457.01.T01:intron 35.0%
TGTTTCTTGCATCTTACAAC+CGG + Chr2:84281718-84281737 None:intergenic 35.0%
TTTATTTGGTTGTCGGTGAT+GGG - Chr2:84281051-84281070 MsG0280011457.01.T01:CDS 35.0%
! CACCAAAGGCATATACTAAT+AGG + Chr2:84282014-84282033 None:intergenic 35.0%
! GAGTTTCTACCCTTTTGATA+TGG - Chr2:84281076-84281095 MsG0280011457.01.T01:CDS 35.0%
! TATTAAAGATGGCATTGGAG+CGG + Chr2:84284454-84284473 None:intergenic 35.0%
! TCCGAATCAATCTTTTATCC+AGG + Chr2:84281928-84281947 None:intergenic 35.0%
! TCTTGTTAAACCTTTTCCCA+CGG - Chr2:84282109-84282128 MsG0280011457.01.T01:intron 35.0%
!! AGTTCTGAAAAACAGAGAAG+TGG + Chr2:84283680-84283699 None:intergenic 35.0%
!! ATCTGTATTATGACGGACTA+CGG + Chr2:84282678-84282697 None:intergenic 35.0%
!! TGACTAGTTTCTGATGATAG+GGG - Chr2:84281377-84281396 MsG0280011457.01.T01:intron 35.0%
!! TGTTTATTGTGTTGGTAGCT+TGG - Chr2:84285105-84285124 MsG0280011457.01.T01:intron 35.0%
!! TTTTATTTGGTTGTCGGTGA+TGG - Chr2:84281050-84281069 MsG0280011457.01.T01:CDS 35.0%
!!! TTGACATTTTGGGTTCATCT+AGG - Chr2:84281175-84281194 MsG0280011457.01.T01:intron 35.0%
AAATAAGAGTGGGGGTAGAA+GGG + Chr2:84283723-84283742 None:intergenic 40.0%
AACTGTACTCCCTGATGTAA+AGG - Chr2:84283358-84283377 MsG0280011457.01.T01:intron 40.0%
AAGCTCATACGATGTATACC+TGG + Chr2:84283254-84283273 None:intergenic 40.0%
ACAAGTAAACTCACAGATGC+AGG - Chr2:84283152-84283171 MsG0280011457.01.T01:intron 40.0%
ACATCACAAAGCAACAGAGT+AGG + Chr2:84284011-84284030 None:intergenic 40.0%
ACCATTATACTTGCCCTTGT+GGG - Chr2:84285031-84285050 MsG0280011457.01.T01:intron 40.0%
ACTAAACCTTCTAACCTCTC+TGG - Chr2:84283745-84283764 MsG0280011457.01.T01:intron 40.0%
ACTGTACTCCCTGATGTAAA+GGG - Chr2:84283359-84283378 MsG0280011457.01.T01:intron 40.0%
ACTTCAGAATCAAAACAGGG+TGG + Chr2:84283624-84283643 None:intergenic 40.0%
AGATTAGATTTGGAAGAGGG+TGG - Chr2:84284223-84284242 MsG0280011457.01.T01:intron 40.0%
AGCTCATACGATGTATACCT+GGG + Chr2:84283253-84283272 None:intergenic 40.0%
ATCCATGGAGGTTCAAAGTT+GGG - Chr2:84280896-84280915 MsG0280011457.01.T01:three_prime_UTR 40.0%
ATGCATTGTTTGATTGCTGG+TGG - Chr2:84285177-84285196 MsG0280011457.01.T01:CDS 40.0%
GAAAGCTTCTACAAAAGGTG+AGG - Chr2:84283077-84283096 MsG0280011457.01.T01:CDS 40.0%
GACTTTCATATGACAAGGTG+AGG + Chr2:84281660-84281679 None:intergenic 40.0%
GATCTATGAAGCACATACAC+TGG - Chr2:84281204-84281223 MsG0280011457.01.T01:intron 40.0%
TAAATAAGAGTGGGGGTAGA+AGG + Chr2:84283724-84283743 None:intergenic 40.0%
TACCATTATACTTGCCCTTG+TGG - Chr2:84285030-84285049 MsG0280011457.01.T01:intron 40.0%
TCAACAGCAATCATACCGTT+GGG + Chr2:84284712-84284731 None:intergenic 40.0%
TCAGACATTTGCCAAGCTAA+TGG - Chr2:84284474-84284493 MsG0280011457.01.T01:intron 40.0%
TGAAAATTGAAGAAGCGGTG+TGG - Chr2:84280813-84280832 MsG0280011457.01.T01:three_prime_UTR 40.0%
TGCTTATAATAGTGACCGGA+GGG - Chr2:84282511-84282530 MsG0280011457.01.T01:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + Chr2:84282530-84282511 None:intergenic 40.0%
TGTCTGACAGATCTAAGCTT+AGG + Chr2:84284090-84284109 None:intergenic 40.0%
TTATTTGGTTGTCGGTGATG+GGG - Chr2:84281052-84281071 MsG0280011457.01.T01:CDS 40.0%
TTCAACAGCAATCATACCGT+TGG + Chr2:84284713-84284732 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG - Chr2:84282510-84282529 MsG0280011457.01.T01:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + Chr2:84282529-84282510 None:intergenic 40.0%
TTTCATATGACAAGGTGAGG+TGG + Chr2:84281657-84281676 None:intergenic 40.0%
TTTCTGATCATAGGTGTGTC+AGG + Chr2:84281320-84281339 None:intergenic 40.0%
! AATCAAGATGACGGCAGTAT+TGG - Chr2:84282574-84282593 MsG0280011457.01.T01:intron 40.0%
! ACGGCTTTTAACAATGTTGC+AGG - Chr2:84284964-84284983 MsG0280011457.01.T01:intron 40.0%
! AGGGAGTACAGTTTGCAAAT+AGG + Chr2:84283351-84283370 None:intergenic 40.0%
! ATGAGAGAGGAGTATAACAG+AGG - Chr2:84283515-84283534 MsG0280011457.01.T01:intron 40.0%
! ATGTTTTACGTGTGGTGGTA+TGG - Chr2:84281590-84281609 MsG0280011457.01.T01:intron 40.0%
! CAAGTTTTCTTGCCTGCAAA+AGG + Chr2:84283008-84283027 None:intergenic 40.0%
! CTCTTTTCTACAGATGAGAG+AGG - Chr2:84283502-84283521 MsG0280011457.01.T01:intron 40.0%
! GCACTGACATTTCTGATCAT+AGG + Chr2:84281329-84281348 None:intergenic 40.0%
! TGAGAGAGGAGTATAACAGA+GGG - Chr2:84283516-84283535 MsG0280011457.01.T01:intron 40.0%
! TTCTGATGTTTTACGTGTGG+TGG - Chr2:84281585-84281604 MsG0280011457.01.T01:intron 40.0%
!! CTCTGTTGCTTTGTGATGTT+AGG - Chr2:84284012-84284031 MsG0280011457.01.T01:intron 40.0%
!! GCTTAGCTCTAAGATTAGAC+CGG + Chr2:84284156-84284175 None:intergenic 40.0%
!! GGAGTCTTTCTGAAGCTAAA+AGG + Chr2:84283571-84283590 None:intergenic 40.0%
AAAATGCATACGGACCCACA+AGG + Chr2:84285048-84285067 None:intergenic 45.0%
AAACTCACAGATGCAGGCTT+GGG - Chr2:84283158-84283177 MsG0280011457.01.T01:intron 45.0%
AAATGCATACGGACCCACAA+GGG + Chr2:84285047-84285066 None:intergenic 45.0%
ACCCACAAGGGCAAGTATAA+TGG + Chr2:84285035-84285054 None:intergenic 45.0%
ACTTGTCTATTATGGGGGGA+GGG - Chr2:84285151-84285170 MsG0280011457.01.T01:intron 45.0%
AGAAGTGGATCAACTGCAAC+GGG + Chr2:84283665-84283684 None:intergenic 45.0%
AGAATCTCTATCACGGCTTC+TGG - Chr2:84282356-84282375 MsG0280011457.01.T01:intron 45.0%
AGCTCAGTTGGATGAGCAAA+TGG - Chr2:84283029-84283048 MsG0280011457.01.T01:CDS 45.0%
ATATGCATTCGGCGATAACC+TGG - Chr2:84281907-84281926 MsG0280011457.01.T01:CDS 45.0%
ATCCCAACTTTGAACCTCCA+TGG + Chr2:84280901-84280920 None:intergenic 45.0%
ATGAGAGGATTCATTCTCGG+TGG - Chr2:84281684-84281703 MsG0280011457.01.T01:intron 45.0%
CAACTTTGAACCTCCATGGA+TGG + Chr2:84280897-84280916 None:intergenic 45.0%
CACGTGTCTATGACACTTGT+TGG - Chr2:84281291-84281310 MsG0280011457.01.T01:intron 45.0%
CATCCATGGAGGTTCAAAGT+TGG - Chr2:84280895-84280914 MsG0280011457.01.T01:three_prime_UTR 45.0%
CTAACCATCTCATCCATCCA+TGG - Chr2:84280881-84280900 MsG0280011457.01.T01:three_prime_UTR 45.0%
GAATTCTATAGTGGCTGCAC+AGG + Chr2:84281491-84281510 None:intergenic 45.0%
GAGAAGTGGATCAACTGCAA+CGG + Chr2:84283666-84283685 None:intergenic 45.0%
TAAACTCACAGATGCAGGCT+TGG - Chr2:84283157-84283176 MsG0280011457.01.T01:intron 45.0%
TAACAACCTGTCCTGTACTG+CGG + Chr2:84284293-84284312 None:intergenic 45.0%
TAATAAGTGACGCACTCCAG+TGG + Chr2:84284365-84284384 None:intergenic 45.0%
TACTTGTCTATTATGGGGGG+AGG - Chr2:84285150-84285169 MsG0280011457.01.T01:intron 45.0%
TCAAAACAGGGTGGACGAAT+AGG + Chr2:84283615-84283634 None:intergenic 45.0%
TCACAAGCACAAGCAACACT+CGG - Chr2:84284617-84284636 MsG0280011457.01.T01:intron 45.0%
TGAGAGGATTCATTCTCGGT+GGG - Chr2:84281685-84281704 MsG0280011457.01.T01:intron 45.0%
TGGCTAATACTTACTCCCTC+CGG - Chr2:84282376-84282395 MsG0280011457.01.T01:intron 45.0%
! AAACCTTTTCCCACGGCATA+GGG - Chr2:84282116-84282135 MsG0280011457.01.T01:intron 45.0%
! AATTAGGTGACTAGCCAGAG+AGG + Chr2:84283762-84283781 None:intergenic 45.0%
! GAGAGAGGAGTATAACAGAG+GGG - Chr2:84283517-84283536 MsG0280011457.01.T01:intron 45.0%
! TAAACCTTTTCCCACGGCAT+AGG - Chr2:84282115-84282134 MsG0280011457.01.T01:intron 45.0%
! TGATGGATGCACGCTCTTTA+AGG + Chr2:84284269-84284288 None:intergenic 45.0%
!! TTATAATAAATAATGTTATA+GGG + Chr2:84283923-84283942 None:intergenic 5.0%
!! TTATTATTTACTTATATATT+TGG - Chr2:84284379-84284398 MsG0280011457.01.T01:intron 5.0%
!!! TAATATATTTTTTGTTTTTT+AGG - Chr2:84282949-84282968 MsG0280011457.01.T01:CDS 5.0%
!!! TTATTTTTTAATGTTTTATT+TGG - Chr2:84281037-84281056 MsG0280011457.01.T01:CDS 5.0%
AAACAGAACAACCCCAGCTG+TGG + Chr2:84284552-84284571 None:intergenic 50.0%
AACCATTTCAGACCCACCAG+AGG + Chr2:84283187-84283206 None:intergenic 50.0%
AAGCAACAGAGTAGGCCTGA+TGG + Chr2:84284003-84284022 None:intergenic 50.0%
ACAGATGTCTGATCCACAGC+TGG - Chr2:84284536-84284555 MsG0280011457.01.T01:intron 50.0%
ACAGCAATCATACCGTTGGG+AGG + Chr2:84284709-84284728 None:intergenic 50.0%
ACCATCTCATCCATCCATGG+AGG - Chr2:84280884-84280903 MsG0280011457.01.T01:three_prime_UTR 50.0%
ACCTCCATGGATGGATGAGA+TGG + Chr2:84280888-84280907 None:intergenic 50.0%
AGAACATAGACCCTATGCCG+TGG + Chr2:84282129-84282148 None:intergenic 50.0%
AGATGTCTGATCCACAGCTG+GGG - Chr2:84284538-84284557 MsG0280011457.01.T01:intron 50.0%
ATTCTCGGTGGGTGACTTAC+CGG - Chr2:84281696-84281715 MsG0280011457.01.T01:intron 50.0%
CAGATGTCTGATCCACAGCT+GGG - Chr2:84284537-84284556 MsG0280011457.01.T01:intron 50.0%
CATAAGTGGGGTTGACTGCA+TGG - Chr2:84281770-84281789 MsG0280011457.01.T01:intron 50.0%
CTTGTCTATTATGGGGGGAG+GGG - Chr2:84285152-84285171 MsG0280011457.01.T01:intron 50.0%
GAACATAGACCCTATGCCGT+GGG + Chr2:84282128-84282147 None:intergenic 50.0%
GTACAAATCACTCGAGGCAG+AGG + Chr2:84281875-84281894 None:intergenic 50.0%
GTGTGGTGGTATGGTACAGA+CGG - Chr2:84281599-84281618 MsG0280011457.01.T01:intron 50.0%
TGAGGCAACAGAGAGTGATC+TGG - Chr2:84283095-84283114 MsG0280011457.01.T01:CDS 50.0%
TTGGGATTCCCTTCGCAAAC+AGG - Chr2:84280914-84280933 MsG0280011457.01.T01:three_prime_UTR 50.0%
! CAGAGAGTGATCTGGAGTCT+TGG - Chr2:84283103-84283122 MsG0280011457.01.T01:CDS 50.0%
! GACTAGCCAGAGAGGTTAGA+AGG + Chr2:84283754-84283773 None:intergenic 50.0%
! GTCTTCCAGCGTTCGACTTT+TGG - Chr2:84284647-84284666 MsG0280011457.01.T01:intron 50.0%
! TCCAGCGTTCGACTTTTGGT+GGG - Chr2:84284651-84284670 MsG0280011457.01.T01:intron 50.0%
! TGGATGCACGCTCTTTAAGG+AGG + Chr2:84284266-84284285 None:intergenic 50.0%
! TTCCAGCGTTCGACTTTTGG+TGG - Chr2:84284650-84284669 MsG0280011457.01.T01:intron 50.0%
!!! TGCAGGAGTTTTATCGGCTC+CGG - Chr2:84284134-84284153 MsG0280011457.01.T01:intron 50.0%
ACTCGAGGCAGAGGAAGACA+TGG + Chr2:84281866-84281885 None:intergenic 55.0%
AGACCCTATGCCGTGGGAAA+AGG + Chr2:84282122-84282141 None:intergenic 55.0%
CAACTGCAACGGGAGATCGA+CGG + Chr2:84283655-84283674 None:intergenic 55.0%
GTCTGTGGCGTGTGAACAGA+CGG - Chr2:84280841-84280860 MsG0280011457.01.T01:three_prime_UTR 55.0%
TCCCACCAAAAGTCGAACGC+TGG + Chr2:84284655-84284674 None:intergenic 55.0%
! GTCCTCTGGTGGGTCTGAAA+TGG - Chr2:84283182-84283201 MsG0280011457.01.T01:intron 55.0%
! TGGCTCTGCAGTGACTGCTT+TGG - Chr2:84281537-84281556 MsG0280011457.01.T01:intron 55.0%
AGGCTTGGGTGTCCTCTGGT+GGG - Chr2:84283172-84283191 MsG0280011457.01.T01:intron 60.0%
ATGCAGGCTTGGGTGTCCTC+TGG - Chr2:84283168-84283187 MsG0280011457.01.T01:intron 60.0%
CATCAGCCGCAGTACAGGAC+AGG - Chr2:84284284-84284303 MsG0280011457.01.T01:intron 60.0%
CTGTCCTGTACTGCGGCTGA+TGG + Chr2:84284286-84284305 None:intergenic 60.0%
GCATCCATCAGCCGCAGTAC+AGG - Chr2:84284279-84284298 MsG0280011457.01.T01:intron 60.0%
AGCGGTGTGGTCGTCGTCTG+TGG - Chr2:84280826-84280845 MsG0280011457.01.T01:three_prime_UTR 65.0%
CAGGCTTGGGTGTCCTCTGG+TGG - Chr2:84283171-84283190 MsG0280011457.01.T01:intron 65.0%
CGTGAGCAGTCGCCTCCCAA+CGG - Chr2:84284694-84284713 MsG0280011457.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 84280775 84285329 84280775 ID=MsG0280011457.01;Name=MsG0280011457.01
Chr2 mRNA 84280775 84285329 84280775 ID=MsG0280011457.01.T01;Parent=MsG0280011457.01;Name=MsG0280011457.01.T01;_AED=0.49;_eAED=0.52;_QI=125|0.2|0.5|1|0.2|0.16|6|231|268
Chr2 exon 84280775 84281118 84280775 ID=MsG0280011457.01.T01:exon:12939;Parent=MsG0280011457.01.T01
Chr2 exon 84281389 84281549 84281389 ID=MsG0280011457.01.T01:exon:12938;Parent=MsG0280011457.01.T01
Chr2 exon 84281799 84281965 84281799 ID=MsG0280011457.01.T01:exon:12937;Parent=MsG0280011457.01.T01
Chr2 exon 84282841 84283133 84282841 ID=MsG0280011457.01.T01:exon:12936;Parent=MsG0280011457.01.T01
Chr2 exon 84284027 84284063 84284027 ID=MsG0280011457.01.T01:exon:12935;Parent=MsG0280011457.01.T01
Chr2 exon 84285169 84285329 84285169 ID=MsG0280011457.01.T01:exon:12934;Parent=MsG0280011457.01.T01
Chr2 five_prime_UTR 84285205 84285329 84285205 ID=MsG0280011457.01.T01:five_prime_utr;Parent=MsG0280011457.01.T01
Chr2 CDS 84285169 84285204 84285169 ID=MsG0280011457.01.T01:cds;Parent=MsG0280011457.01.T01
Chr2 CDS 84284027 84284063 84284027 ID=MsG0280011457.01.T01:cds;Parent=MsG0280011457.01.T01
Chr2 CDS 84282841 84283133 84282841 ID=MsG0280011457.01.T01:cds;Parent=MsG0280011457.01.T01
Chr2 CDS 84281799 84281965 84281799 ID=MsG0280011457.01.T01:cds;Parent=MsG0280011457.01.T01
Chr2 CDS 84281389 84281549 84281389 ID=MsG0280011457.01.T01:cds;Parent=MsG0280011457.01.T01
Chr2 CDS 84281006 84281118 84281006 ID=MsG0280011457.01.T01:cds;Parent=MsG0280011457.01.T01
Chr2 three_prime_UTR 84280775 84281005 84280775 ID=MsG0280011457.01.T01:three_prime_utr;Parent=MsG0280011457.01.T01
Gene Sequence

>MsG0280011457.01.T01

ATGGAGGTTCAAAGTTGGGATTCCCTTCGCAAACAGTATTATGCATTTCTTGTTAAACCTTTGTTTCCTATTAGCAAATTATTAACAGAAATTTGTTGTCTTTTTAACCTTTTGCAGGCAAGAAAACTTGAAGCTCAGTTGGATGAGCAAATGGTTTTATATCGTAAATTGGTTTCAACGAAAGCTTCTACAAAAGGTGAGGCAACAGAGAGTGATCTGGAGTCTTGGATTGAACGTTTACTTAATCAACTCAAACAAGTAAACTCACAGATGCAGGCTTGGGTGTCCTCTGGTGGGTCTGAAATGGTTTCTCATACACTGACTAGACACCAAGAAATTTATCAAGATCTCACCCAGGTATACATCGAGTTTTATCGGCTCCGGTCTAATCTTAGAGCTAAGCAAGAACACGCTTCACTACTTGATGATTTTAAAGAGCTTGATCGAACAAGATTAGATTTGGAAGAGGGTGGAAGTTCTGAACAGCAAACCTCCTTAAAGAGCGTGCATCCATCAGCCGCAGTACAGGACAGCTGGGGTTGTTCTGTTTTAATATACTGTGTTTATTCTTGTACTGCAGATGGACACTGTTATTTCACAAGCACAAGCAACACTCGGTGCACTAGTCTTCCAGCGTTCGACTTTTGGTGGGATCAATTCAAAGCTCAGCAACGTGAGCAGTCGCCTCCCAACGGTAAATACTATTCTGTCAGCAATAAAGCGAAAAAAGTCGATGGATACCATTATACTTGCCCTTGTGGGTCCGTATGCATTTTTCTTATTTTCATCTACTGGCTAACCAAGTAA

Protein sequence

>MsG0280011457.01.T01

MEVQSWDSLRKQYYAFLVKPLFPISKLLTEICCLFNLLQARKLEAQLDEQMVLYRKLVSTKASTKGEATESDLESWIERLLNQLKQVNSQMQAWVSSGGSEMVSHTLTRHQEIYQDLTQVYIEFYRLRSNLRAKQEHASLLDDFKELDRTRLDLEEGGSSEQQTSLKSVHPSAAVQDSWGCSVLIYCVYSCTADGHCYFTSTSNTRCTSLPAFDFWWDQFKAQQREQSPPNGKYYSVSNKAKKVDGYHYTCPCGSVCIFLIFIYWLTK*