AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016573.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016573.01.T01 MTR_3g092095 99.254 134 1 0 1 134 1 134 6.01e-98 277
MsG0380016573.01.T01 MTR_3g092095 100.000 98 0 0 37 134 1 98 4.78e-69 203
MsG0380016573.01.T01 MTR_4g022350 66.667 132 44 0 1 132 14 145 4.01e-64 192
MsG0380016573.01.T01 MTR_4g022350 66.667 132 44 0 1 132 1 132 5.73e-64 191
MsG0380016573.01.T01 MTR_8g027080 58.824 136 53 1 1 133 1 136 2.55e-56 172
MsG0380016573.01.T01 MTR_8g027080 58.824 136 53 1 1 133 1 136 2.72e-56 172
MsG0380016573.01.T01 MTR_8g027080 58.824 136 53 1 1 133 1 136 2.92e-56 172
MsG0380016573.01.T01 MTR_8g027080 58.824 136 53 1 1 133 1 136 5.48e-56 172
MsG0380016573.01.T01 MTR_7g117990 57.037 135 56 1 2 134 3 137 2.58e-45 144
MsG0380016573.01.T01 MTR_5g045630 60.714 84 33 0 1 84 1 84 2.97e-34 116
MsG0380016573.01.T01 MTR_5g045630 63.492 63 23 0 22 84 8 70 1.55e-24 90.9
MsG0380016573.01.T01 MTR_3g102780 36.434 129 73 1 12 131 90 218 6.06e-24 92.4
MsG0380016573.01.T01 MTR_3g073180 42.500 80 45 1 1 80 521 599 6.07e-18 79.3
MsG0380016573.01.T01 MTR_3g073150 45.333 75 40 1 6 80 517 590 4.86e-17 76.6
MsG0380016573.01.T01 MTR_5g059820 40.000 80 47 1 1 80 513 591 2.89e-16 74.3
MsG0380016573.01.T01 MTR_6g088690 42.857 70 39 1 12 81 50 118 9.52e-16 68.6
MsG0380016573.01.T01 MTR_0085s0010 34.568 81 53 0 3 83 137 217 3.70e-13 63.9
MsG0380016573.01.T01 MTR_8g056100 38.356 73 44 1 6 78 7 78 2.06e-11 60.5
MsG0380016573.01.T02 MTR_3g092095 99.254 134 1 0 1 134 1 134 6.01e-98 277
MsG0380016573.01.T02 MTR_3g092095 100.000 98 0 0 37 134 1 98 4.78e-69 203
MsG0380016573.01.T02 MTR_4g022350 66.667 132 44 0 1 132 14 145 4.01e-64 192
MsG0380016573.01.T02 MTR_4g022350 66.667 132 44 0 1 132 1 132 5.73e-64 191
MsG0380016573.01.T02 MTR_8g027080 58.824 136 53 1 1 133 1 136 2.55e-56 172
MsG0380016573.01.T02 MTR_8g027080 58.824 136 53 1 1 133 1 136 2.72e-56 172
MsG0380016573.01.T02 MTR_8g027080 58.824 136 53 1 1 133 1 136 2.92e-56 172
MsG0380016573.01.T02 MTR_8g027080 58.824 136 53 1 1 133 1 136 5.48e-56 172
MsG0380016573.01.T02 MTR_7g117990 57.037 135 56 1 2 134 3 137 2.58e-45 144
MsG0380016573.01.T02 MTR_5g045630 60.714 84 33 0 1 84 1 84 2.97e-34 116
MsG0380016573.01.T02 MTR_5g045630 63.492 63 23 0 22 84 8 70 1.55e-24 90.9
MsG0380016573.01.T02 MTR_3g102780 36.434 129 73 1 12 131 90 218 6.06e-24 92.4
MsG0380016573.01.T02 MTR_3g073180 42.500 80 45 1 1 80 521 599 6.07e-18 79.3
MsG0380016573.01.T02 MTR_3g073150 45.333 75 40 1 6 80 517 590 4.86e-17 76.6
MsG0380016573.01.T02 MTR_5g059820 40.000 80 47 1 1 80 513 591 2.89e-16 74.3
MsG0380016573.01.T02 MTR_6g088690 42.857 70 39 1 12 81 50 118 9.52e-16 68.6
MsG0380016573.01.T02 MTR_0085s0010 34.568 81 53 0 3 83 137 217 3.70e-13 63.9
MsG0380016573.01.T02 MTR_8g056100 38.356 73 44 1 6 78 7 78 2.06e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016573.01.T01 AT5G53560 79.851 134 27 0 1 134 1 134 4.91e-79 229
MsG0380016573.01.T01 AT2G32720 66.667 132 44 0 1 132 1 132 6.94e-67 199
MsG0380016573.01.T01 AT5G48810 60.294 136 52 1 1 134 1 136 1.02e-60 183
MsG0380016573.01.T01 AT2G32720 70.270 111 33 0 22 132 22 132 3.85e-55 169
MsG0380016573.01.T01 AT2G46650 51.938 129 60 1 7 133 4 132 2.61e-38 126
MsG0380016573.01.T01 AT1G26340 44.094 127 61 2 6 127 6 127 5.32e-36 120
MsG0380016573.01.T01 AT1G37130 42.500 80 45 1 1 80 538 616 7.20e-19 82.0
MsG0380016573.01.T01 AT1G60660 43.421 76 42 1 5 80 46 120 1.46e-17 73.6
MsG0380016573.01.T01 AT1G77760 40.000 80 47 1 1 80 541 619 3.90e-17 77.0
MsG0380016573.01.T01 AT3G61580 38.158 76 46 1 3 78 5 79 8.36e-13 64.3
MsG0380016573.01.T01 AT2G46210 38.571 70 42 1 9 78 11 79 4.09e-11 59.7
MsG0380016573.01.T01 AT5G09680 32.530 83 56 0 3 85 170 252 4.99e-11 58.9
MsG0380016573.01.T02 AT5G53560 79.851 134 27 0 1 134 1 134 4.91e-79 229
MsG0380016573.01.T02 AT2G32720 66.667 132 44 0 1 132 1 132 6.94e-67 199
MsG0380016573.01.T02 AT5G48810 60.294 136 52 1 1 134 1 136 1.02e-60 183
MsG0380016573.01.T02 AT2G32720 70.270 111 33 0 22 132 22 132 3.85e-55 169
MsG0380016573.01.T02 AT2G46650 51.938 129 60 1 7 133 4 132 2.61e-38 126
MsG0380016573.01.T02 AT1G26340 44.094 127 61 2 6 127 6 127 5.32e-36 120
MsG0380016573.01.T02 AT1G37130 42.500 80 45 1 1 80 538 616 7.20e-19 82.0
MsG0380016573.01.T02 AT1G60660 43.421 76 42 1 5 80 46 120 1.46e-17 73.6
MsG0380016573.01.T02 AT1G77760 40.000 80 47 1 1 80 541 619 3.90e-17 77.0
MsG0380016573.01.T02 AT3G61580 38.158 76 46 1 3 78 5 79 8.36e-13 64.3
MsG0380016573.01.T02 AT2G46210 38.571 70 42 1 9 78 11 79 4.09e-11 59.7
MsG0380016573.01.T02 AT5G09680 32.530 83 56 0 3 85 170 252 4.99e-11 58.9

Find 17 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATCTCTTCTTCACTTT+GGG 0.187989 3:-85291262 None:intergenic
GAGAATAAGCCAGCAATCTT+TGG 0.319930 3:-85291653 None:intergenic
GTCAAATCTCTTCTTCACTT+TGG 0.341887 3:-85291263 None:intergenic
GATTGCTGGCTTATTCTCTC+TGG 0.386144 3:+85291658 MsG0380016573.01.T01:CDS
TTCAGATAAAATTAATTTGT+GGG 0.386673 3:+85291523 MsG0380016573.01.T01:intron
TCATCGAAAGTGTGAAGCTT+TGG 0.412470 3:-85291610 None:intergenic
TCTCTTCTTCACTTTGGGGT+TGG 0.435970 3:-85291257 None:intergenic
CAAATCTCTTCTTCACTTTG+GGG 0.437199 3:-85291261 None:intergenic
AATTACCACTTCCGGTCCTT+GGG 0.440955 3:-85291317 None:intergenic
GAATTACCACTTCCGGTCCT+TGG 0.443825 3:-85291318 None:intergenic
ATTCAGATAAAATTAATTTG+TGG 0.466276 3:+85291522 MsG0380016573.01.T01:intron
ACAACAAGACCAAAGATTGC+TGG 0.472357 3:+85291644 MsG0380016573.01.T01:CDS
CAAGAGGGAATTACCACTTC+CGG 0.485709 3:-85291325 None:intergenic
CTGGCTTATTCTCTCTGGAA+AGG 0.542076 3:+85291663 MsG0380016573.01.T01:CDS
AATCTCCCAAGGACCGGAAG+TGG 0.548565 3:+85291312 MsG0380016573.01.T01:five_prime_UTR
ACTCAGAATCTCCCAAGGAC+CGG 0.572963 3:+85291306 MsG0380016573.01.T01:five_prime_UTR
TCATCACTCAGAATCTCCCA+AGG 0.658723 3:+85291301 MsG0380016573.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAAAATATTAGTACATA+TGG - Chr3:85292494-85292513 None:intergenic 15.0%
!! ATAAATTAATAACCCATTAT+AGG - Chr3:85292893-85292912 None:intergenic 15.0%
!! ATAGTACAATATAATCAATA+TGG - Chr3:85293485-85293504 None:intergenic 15.0%
!! ATCTAAAGAATCAATAAAAA+GGG - Chr3:85291490-85291509 None:intergenic 15.0%
!! TGTAGAAAAATTTATGTATT+TGG - Chr3:85293273-85293292 None:intergenic 15.0%
!!! ATATTACATTTGTATTTTGT+GGG + Chr3:85292666-85292685 MsG0380016573.01.T01:intron 15.0%
!!! ATTCAGATAAAATTAATTTG+TGG + Chr3:85291522-85291541 MsG0380016573.01.T01:intron 15.0%
!!! TATATTACATTTGTATTTTG+TGG + Chr3:85292665-85292684 MsG0380016573.01.T01:intron 15.0%
!!! TTCAGATAAAATTAATTTGT+GGG + Chr3:85291523-85291542 MsG0380016573.01.T01:intron 15.0%
!! ACTACAAATGAATTACAATT+AGG - Chr3:85291896-85291915 None:intergenic 20.0%
!! CAACATTCAATCTTAAAATT+AGG - Chr3:85291967-85291986 None:intergenic 20.0%
!! GAATAAGAAGAATGAATATT+AGG + Chr3:85292614-85292633 MsG0380016573.01.T01:intron 20.0%
!! GATCTAAAGAATCAATAAAA+AGG - Chr3:85291491-85291510 None:intergenic 20.0%
!! TCTAAAGAATCAATAAAAAG+GGG - Chr3:85291489-85291508 None:intergenic 20.0%
!! TTGAATTATTCAAATCTGAA+CGG + Chr3:85292253-85292272 MsG0380016573.01.T01:intron 20.0%
!!! TATAATGTTTTACAACTTTC+TGG + Chr3:85293887-85293906 MsG0380016573.01.T01:three_prime_UTR 20.0%
!!! TATTACATTTGTATTTTGTG+GGG + Chr3:85292667-85292686 MsG0380016573.01.T01:intron 20.0%
!!! TTATTGGTATCCTTTTAAAA+TGG + Chr3:85292821-85292840 MsG0380016573.01.T01:intron 20.0%
! AAGAACAAATTATCGTTAAG+AGG - Chr3:85293333-85293352 None:intergenic 25.0%
! AAGCATCTAAGCTATATAAA+AGG - Chr3:85293053-85293072 None:intergenic 25.0%
! ACTATACTGTATCAATTACA+GGG + Chr3:85293500-85293519 MsG0380016573.01.T01:intron 25.0%
! ACTGAAAAACCTAATAATGT+TGG + Chr3:85293932-85293951 MsG0380016573.01.T01:three_prime_UTR 25.0%
! ATGCTTATATCATTCGAAAA+GGG + Chr3:85293434-85293453 MsG0380016573.01.T01:intron 25.0%
! ATTCACAATCCAACATTATT+AGG - Chr3:85293944-85293963 None:intergenic 25.0%
! ATTTGTTCTTCAATCATGTT+AGG + Chr3:85293343-85293362 MsG0380016573.01.T01:intron 25.0%
! TAAGTTAATCTACCTCTTAT+TGG + Chr3:85292805-85292824 MsG0380016573.01.T01:intron 25.0%
! TACAATAAGATCCAAACTTA+AGG - Chr3:85292228-85292247 None:intergenic 25.0%
! TACTATACTGTATCAATTAC+AGG + Chr3:85293499-85293518 MsG0380016573.01.T01:intron 25.0%
! TATGCTTATATCATTCGAAA+AGG + Chr3:85293433-85293452 MsG0380016573.01.T01:intron 25.0%
! TTCCATGATTGATTATTCTT+CGG + Chr3:85291711-85291730 MsG0380016573.01.T01:intron 25.0%
! TTTAAAAGGATACCAATAAG+AGG - Chr3:85292820-85292839 None:intergenic 25.0%
! TTTAACTGTCACGTAAAATA+TGG + Chr3:85292507-85292526 MsG0380016573.01.T01:intron 25.0%
!! AACGTTTAAAATAGTGAAAG+TGG - Chr3:85293158-85293177 None:intergenic 25.0%
!! CGATGACTCATTTTATTATT+TGG - Chr3:85292325-85292344 None:intergenic 25.0%
!! TTTAAGATTGAATGTTGTTG+AGG + Chr3:85291970-85291989 MsG0380016573.01.T01:intron 25.0%
!!! AAGATGAAGTTCAAGTTTTT+GGG + Chr3:85291814-85291833 MsG0380016573.01.T01:intron 25.0%
!!! GTAGACAGATTACATTTTTT+AGG + Chr3:85292057-85292076 MsG0380016573.01.T01:intron 25.0%
AAGGATAAAGAATCAAACTG+TGG - Chr3:85292934-85292953 None:intergenic 30.0%
AATAACCCATTATAGGAAGA+CGG - Chr3:85292886-85292905 None:intergenic 30.0%
AATAAGATCCAAACTTAAGG+TGG - Chr3:85292225-85292244 None:intergenic 30.0%
AATTAGAATAGCCTCACAAT+TGG - Chr3:85293198-85293217 None:intergenic 30.0%
ATTCATTCTTCTTACACGTT+CGG - Chr3:85292598-85292617 None:intergenic 30.0%
ATTTATAGAGGGTCATTCAA+AGG + Chr3:85293819-85293838 MsG0380016573.01.T01:three_prime_UTR 30.0%
ATTTGAAGGGAAAAAACAAG+AGG - Chr3:85291344-85291363 None:intergenic 30.0%
CTAATGTCTTATAGGAAGAT+AGG - Chr3:85293108-85293127 None:intergenic 30.0%
GCTATATAAAAGGAAGATTG+AGG - Chr3:85293043-85293062 None:intergenic 30.0%
GGAAAAGAGAAGAATTTGAA+GGG - Chr3:85291357-85291376 None:intergenic 30.0%
GTCTGTTAGCTATTTATAGA+GGG + Chr3:85293808-85293827 MsG0380016573.01.T01:three_prime_UTR 30.0%
GTGCAATATGATGATAAAGA+AGG - Chr3:85293777-85293796 None:intergenic 30.0%
TAAAGAATCAAACTGTGGAA+AGG - Chr3:85292929-85292948 None:intergenic 30.0%
TAGAAAAGAATCGATGCAAA+GGG - Chr3:85291378-85291397 None:intergenic 30.0%
TATAGCTTAGATGCTTTCAT+TGG + Chr3:85293057-85293076 MsG0380016573.01.T01:intron 30.0%
TCAAATCTCTTCTTCACTTT+GGG - Chr3:85291265-85291284 None:intergenic 30.0%
TCAGTGTGGTTAACAAATTA+TGG + Chr3:85292015-85292034 MsG0380016573.01.T01:intron 30.0%
TCTTATAGGAAGATAGGTTA+GGG - Chr3:85293102-85293121 None:intergenic 30.0%
TGCATGTTACATATATTTCC+TGG + Chr3:85291841-85291860 MsG0380016573.01.T01:intron 30.0%
TGGCAGTGAAAGAAAAAAAA+TGG + Chr3:85291579-85291598 MsG0380016573.01.T01:intron 30.0%
TTAGAAAAGAATCGATGCAA+AGG - Chr3:85291379-85291398 None:intergenic 30.0%
TTCCGAAGAATAATCAATCA+TGG - Chr3:85291716-85291735 None:intergenic 30.0%
TTTGAAGGGAAAAAACAAGA+GGG - Chr3:85291343-85291362 None:intergenic 30.0%
! GTTTAGCATCTTTGTTTCAT+TGG + Chr3:85293977-85293996 MsG0380016573.01.T01:three_prime_UTR 30.0%
!! AACCAATGATTTTGAAGATG+TGG + Chr3:85293531-85293550 MsG0380016573.01.T01:CDS 30.0%
!! ACCAATGATTTTGAAGATGT+GGG + Chr3:85293532-85293551 MsG0380016573.01.T01:CDS 30.0%
!! ATGATGGACAAATACTACAT+TGG + Chr3:85293577-85293596 MsG0380016573.01.T01:CDS 30.0%
!! GAAGATGAAGTTCAAGTTTT+TGG + Chr3:85291813-85291832 MsG0380016573.01.T01:intron 30.0%
!! GTTTTACAACTTTCTGGTAA+TGG + Chr3:85293893-85293912 MsG0380016573.01.T01:three_prime_UTR 30.0%
!!! GGTTTGACTTGAATTTTTCT+GGG + Chr3:85291544-85291563 MsG0380016573.01.T01:intron 30.0%
!!! TGGTATCCTTTTAAAATGGA+GGG + Chr3:85292825-85292844 MsG0380016573.01.T01:intron 30.0%
!!! TTGGTATCCTTTTAAAATGG+AGG + Chr3:85292824-85292843 MsG0380016573.01.T01:intron 30.0%
AAAATGGAGGGAGGAAAAAA+AGG + Chr3:85292837-85292856 MsG0380016573.01.T01:intron 35.0%
AAGAAGGAACTACTCTTTCT+TGG - Chr3:85293761-85293780 None:intergenic 35.0%
ACGACTAGTAATGCACATAA+AGG - Chr3:85292457-85292476 None:intergenic 35.0%
ATAAACCCGTCTTCCTATAA+TGG + Chr3:85292877-85292896 MsG0380016573.01.T01:intron 35.0%
ATAACCCATTATAGGAAGAC+GGG - Chr3:85292885-85292904 None:intergenic 35.0%
CAAATCTCTTCTTCACTTTG+GGG - Chr3:85291264-85291283 None:intergenic 35.0%
CATGCAAAATTACTGGTGTT+AGG - Chr3:85292367-85292386 None:intergenic 35.0%
CTTATAGGAAGATAGGTTAG+GGG - Chr3:85293101-85293120 None:intergenic 35.0%
GAGTAGAAGAATATAGCATC+TGG + Chr3:85292400-85292419 MsG0380016573.01.T01:intron 35.0%
GGGAAAAGAGAAGAATTTGA+AGG - Chr3:85291358-85291377 None:intergenic 35.0%
GGTCTGTTAGCTATTTATAG+AGG + Chr3:85293807-85293826 MsG0380016573.01.T01:three_prime_UTR 35.0%
GTCAAATCTCTTCTTCACTT+TGG - Chr3:85291266-85291285 None:intergenic 35.0%
GTCTTATAGGAAGATAGGTT+AGG - Chr3:85293103-85293122 None:intergenic 35.0%
TAAACCCGTCTTCCTATAAT+GGG + Chr3:85292878-85292897 MsG0380016573.01.T01:intron 35.0%
TCCCACATCTTCAAAATCAT+TGG - Chr3:85293536-85293555 None:intergenic 35.0%
TCTCTAGCATGCAAAATTAC+TGG - Chr3:85292374-85292393 None:intergenic 35.0%
TGATTCTGCTAGAGAAATGA+TGG + Chr3:85293561-85293580 MsG0380016573.01.T01:CDS 35.0%
TTCATTCTTCTTACACGTTC+GGG - Chr3:85292597-85292616 None:intergenic 35.0%
TTTGGTCATCTATGAGTAAG+AGG - Chr3:85292307-85292326 None:intergenic 35.0%
! GACAGTGTTTAGTTTCTTCT+TGG + Chr3:85293841-85293860 MsG0380016573.01.T01:three_prime_UTR 35.0%
! TAATTTTGCATGCTAGAGAG+TGG + Chr3:85292375-85292394 MsG0380016573.01.T01:intron 35.0%
! TCGACTAGCTAATGTCTTAT+AGG - Chr3:85293116-85293135 None:intergenic 35.0%
! TTAGTCAAATATGCTCTGAG+AGG + Chr3:85293010-85293029 MsG0380016573.01.T01:intron 35.0%
! TTTCCTCCCTCCATTTTAAA+AGG - Chr3:85292834-85292853 None:intergenic 35.0%
!! TTTCTGGGTCTTTGATTTTG+TGG + Chr3:85291559-85291578 MsG0380016573.01.T01:intron 35.0%
!!! GGGTTTGACTTGAATTTTTC+TGG + Chr3:85291543-85291562 MsG0380016573.01.T01:intron 35.0%
!!! TATCCTTTTAAAATGGAGGG+AGG + Chr3:85292828-85292847 MsG0380016573.01.T01:intron 35.0%
AACTGTGGAAAGGAAGAGTA+TGG - Chr3:85292919-85292938 None:intergenic 40.0%
AAGATCCAAACTTAAGGTGG+TGG - Chr3:85292222-85292241 None:intergenic 40.0%
ACAAACGAAGCATGTCATGT+AGG - Chr3:85292196-85292215 None:intergenic 40.0%
ACAACAAGACCAAAGATTGC+TGG + Chr3:85291644-85291663 MsG0380016573.01.T01:CDS 40.0%
ACCATTCAGGCCAATATACA+TGG - Chr3:85293240-85293259 None:intergenic 40.0%
AGATAGATCTCAAGATCTGC+AGG - Chr3:85292747-85292766 None:intergenic 40.0%
ATCATATTGCACCCTTGTGA+GGG + Chr3:85293785-85293804 MsG0380016573.01.T01:three_prime_UTR 40.0%
ATCTGATGTTTGATGCCATG+TGG + Chr3:85292763-85292782 MsG0380016573.01.T01:intron 40.0%
ATGCTATGTCTAGATCAGTG+TGG + Chr3:85292001-85292020 MsG0380016573.01.T01:intron 40.0%
CTAGTCGAAAATCTAGCAGA+AGG + Chr3:85293128-85293147 MsG0380016573.01.T01:intron 40.0%
GAGAATAAGCCAGCAATCTT+TGG - Chr3:85291656-85291675 None:intergenic 40.0%
GGTGTAGTTTCTGACAACAA+AGG - Chr3:85293740-85293759 None:intergenic 40.0%
GTCTACAAGTACAGAAGAAC+AGG - Chr3:85292043-85292062 None:intergenic 40.0%
TCAGCAATCTCAGTACAATC+CGG + Chr3:85293648-85293667 MsG0380016573.01.T01:CDS 40.0%
TCTGATGTTTGATGCCATGT+GGG + Chr3:85292764-85292783 MsG0380016573.01.T01:intron 40.0%
! ACAAATTCCGAAGTCTTGTC+CGG - Chr3:85293670-85293689 None:intergenic 40.0%
! ACCATGTATATTGGCCTGAA+TGG + Chr3:85293236-85293255 MsG0380016573.01.T01:intron 40.0%
! ATAGGAAGACGGGTTTATGA+AGG - Chr3:85292875-85292894 None:intergenic 40.0%
! ATGCAGAGCACCATGTATAT+TGG + Chr3:85293227-85293246 MsG0380016573.01.T01:intron 40.0%
! ATGGTGCTCTGCATTTTTCA+GGG - Chr3:85293221-85293240 None:intergenic 40.0%
! GATCAAGATTTTGCAGTTCC+TGG + Chr3:85293690-85293709 MsG0380016573.01.T01:CDS 40.0%
! TCATCGAAAGTGTGAAGCTT+TGG - Chr3:85291613-85291632 None:intergenic 40.0%
!! CAACTTTCTGGTAATGGTAC+TGG + Chr3:85293899-85293918 MsG0380016573.01.T01:three_prime_UTR 40.0%
AACGTTGCCTGATATTGCGA+TGG + Chr3:85293172-85293191 MsG0380016573.01.T01:intron 45.0%
AATTACCACTTCCGGTCCTT+GGG - Chr3:85291320-85291339 None:intergenic 45.0%
ACATGCAATGCACAAGATCC+AGG - Chr3:85291862-85291881 None:intergenic 45.0%
CAAAGGCTAAGCCCAATATC+AGG - Chr3:85293723-85293742 None:intergenic 45.0%
CAAGAGGGAATTACCACTTC+CGG - Chr3:85291328-85291347 None:intergenic 45.0%
CAATTGGCCATCGCAATATC+AGG - Chr3:85293182-85293201 None:intergenic 45.0%
CATCATATTGCACCCTTGTG+AGG + Chr3:85293784-85293803 MsG0380016573.01.T01:three_prime_UTR 45.0%
CATTGTGTTTCGACGTCACA+GGG - Chr3:85292962-85292981 None:intergenic 45.0%
CGATACTGCTCGCTTATGAA+AGG - Chr3:85292549-85292568 None:intergenic 45.0%
CGGGATGATCCTCCATAAAA+GGG - Chr3:85293382-85293401 None:intergenic 45.0%
CTGCTCGCTTATGAAAGGTA+TGG - Chr3:85292544-85292563 None:intergenic 45.0%
CTGTGACGTCGAAACACAAT+GGG + Chr3:85292961-85292980 MsG0380016573.01.T01:intron 45.0%
GGATTGTACTGAGATTGCTG+AGG - Chr3:85293649-85293668 None:intergenic 45.0%
GGGATGATCCTCCATAAAAG+GGG - Chr3:85293381-85293400 None:intergenic 45.0%
GTACAATCCGGACAAGACTT+CGG + Chr3:85293660-85293679 MsG0380016573.01.T01:CDS 45.0%
GTCAACCACCACCTTAAGTT+TGG + Chr3:85292214-85292233 MsG0380016573.01.T01:intron 45.0%
GTGCATTACTAGTCGTGTAC+TGG + Chr3:85292461-85292480 MsG0380016573.01.T01:intron 45.0%
TAGGAAGATAGGTTAGGGGA+AGG - Chr3:85293097-85293116 None:intergenic 45.0%
TATTGCGATGGCCAATTGTG+AGG + Chr3:85293184-85293203 MsG0380016573.01.T01:intron 45.0%
TCATATTGCACCCTTGTGAG+GGG + Chr3:85293786-85293805 MsG0380016573.01.T01:three_prime_UTR 45.0%
TCATCACTCAGAATCTCCCA+AGG + Chr3:85291301-85291320 MsG0380016573.01.T01:five_prime_UTR 45.0%
TGGCCTGAATGGTCACTATT+GGG + Chr3:85293247-85293266 MsG0380016573.01.T01:intron 45.0%
TGTGACGTCGAAACACAATG+GGG + Chr3:85292962-85292981 MsG0380016573.01.T01:intron 45.0%
TTGGCCTGAATGGTCACTAT+TGG + Chr3:85293246-85293265 MsG0380016573.01.T01:intron 45.0%
TTGTACTGAGATTGCTGAGG+TGG - Chr3:85293646-85293665 None:intergenic 45.0%
TTTGATGCCATGTGGGACTT+GGG + Chr3:85292771-85292790 MsG0380016573.01.T01:intron 45.0%
! AAACACAATGGGGAGAGTGT+TGG + Chr3:85292972-85292991 MsG0380016573.01.T01:intron 45.0%
! CATGGTGCTCTGCATTTTTC+AGG - Chr3:85293222-85293241 None:intergenic 45.0%
! CCTTTTATGGAGGATCATCC+CGG + Chr3:85293380-85293399 MsG0380016573.01.T01:CDS 45.0%
! CTGGCTTATTCTCTCTGGAA+AGG + Chr3:85291663-85291682 MsG0380016573.01.T01:CDS 45.0%
! GTACGATGTCACCCCTTTTA+TGG + Chr3:85293367-85293386 MsG0380016573.01.T01:CDS 45.0%
!! GATTGCTGGCTTATTCTCTC+TGG + Chr3:85291658-85291677 MsG0380016573.01.T01:CDS 45.0%
!! GGTATGCTACTAAAGCACTG+AGG + Chr3:85293455-85293474 MsG0380016573.01.T01:intron 45.0%
!! GGTGTCTTGAGCATTGAAAC+TGG + Chr3:85293862-85293881 MsG0380016573.01.T01:three_prime_UTR 45.0%
!! GTCAAATATGCTCTGAGAGG+TGG + Chr3:85293013-85293032 MsG0380016573.01.T01:intron 45.0%
!! TCTCTTCTTCACTTTGGGGT+TGG - Chr3:85291260-85291279 None:intergenic 45.0%
AACAGAACCTCATCACCTCC+GGG - Chr3:85293401-85293420 None:intergenic 50.0%
ACTCAGAATCTCCCAAGGAC+CGG + Chr3:85291306-85291325 MsG0380016573.01.T01:five_prime_UTR 50.0%
AGATTGCTGAGGTGGAACGT+AGG - Chr3:85293638-85293657 None:intergenic 50.0%
AGCTAACAGACCCCTCACAA+GGG - Chr3:85293799-85293818 None:intergenic 50.0%
CAACAGAACCTCATCACCTC+CGG - Chr3:85293402-85293421 None:intergenic 50.0%
CCATTGTGTTTCGACGTCAC+AGG - Chr3:85292963-85292982 None:intergenic 50.0%
CCGGGATGATCCTCCATAAA+AGG - Chr3:85293383-85293402 None:intergenic 50.0%
CCTGTGACGTCGAAACACAA+TGG + Chr3:85292960-85292979 MsG0380016573.01.T01:intron 50.0%
CTGGTGCCTCTCCTGATATT+GGG + Chr3:85293709-85293728 MsG0380016573.01.T01:CDS 50.0%
GAATTACCACTTCCGGTCCT+TGG - Chr3:85291321-85291340 None:intergenic 50.0%
GAGGTTCTGTTGTCTGCAAC+AGG + Chr3:85293410-85293429 MsG0380016573.01.T01:CDS 50.0%
GCTAAGCCCAATATCAGGAG+AGG - Chr3:85293718-85293737 None:intergenic 50.0%
GTTTGATGCCATGTGGGACT+TGG + Chr3:85292770-85292789 MsG0380016573.01.T01:intron 50.0%
TAGCTAACAGACCCCTCACA+AGG - Chr3:85293800-85293819 None:intergenic 50.0%
TGGAACGTAGGTGCGCTTAA+GGG - Chr3:85293626-85293645 None:intergenic 50.0%
TGGCCCAATAGTGACCATTC+AGG - Chr3:85293253-85293272 None:intergenic 50.0%
TTTATGGAGGATCATCCCGG+AGG + Chr3:85293383-85293402 MsG0380016573.01.T01:CDS 50.0%
! CGATGTCACCCCTTTTATGG+AGG + Chr3:85293370-85293389 MsG0380016573.01.T01:CDS 50.0%
AATCTCCCAAGGACCGGAAG+TGG + Chr3:85291312-85291331 MsG0380016573.01.T01:five_prime_UTR 55.0%
ATGCCATGTGGGACTTGGGA+AGG + Chr3:85292775-85292794 MsG0380016573.01.T01:intron 55.0%
CCTGGTGCCTCTCCTGATAT+TGG + Chr3:85293708-85293727 MsG0380016573.01.T01:CDS 55.0%
CGCTTAAGGGGAACAGTGGA+TGG - Chr3:85293613-85293632 None:intergenic 55.0%
GGAACGTAGGTGCGCTTAAG+GGG - Chr3:85293625-85293644 None:intergenic 55.0%
GTGGAACGTAGGTGCGCTTA+AGG - Chr3:85293627-85293646 None:intergenic 55.0%
TCGACGTCACAGGGAACAGA+AGG - Chr3:85292953-85292972 None:intergenic 55.0%
TGCCATGTGGGACTTGGGAA+GGG + Chr3:85292776-85292795 MsG0380016573.01.T01:intron 55.0%
TTCCCTTCCCAAGTCCCACA+TGG - Chr3:85292781-85292800 None:intergenic 55.0%
!! CCAATATCAGGAGAGGCACC+AGG - Chr3:85293711-85293730 None:intergenic 55.0%
GGATCATCCCGGAGGTGATG+AGG + Chr3:85293391-85293410 MsG0380016573.01.T01:CDS 60.0%
GGTGCGCTTAAGGGGAACAG+TGG - Chr3:85293617-85293636 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85291256 85294007 85291256 ID=MsG0380016573.01;Name=MsG0380016573.01
Chr3 mRNA 85291256 85294007 85291256 ID=MsG0380016573.01.T01;Parent=MsG0380016573.01;Name=MsG0380016573.01.T01;_AED=0.49;_eAED=0.49;_QI=91|1|1|1|0.66|0.5|4|236|134
Chr3 exon 85291256 85291333 85291256 ID=MsG0380016573.01.T01:exon:14493;Parent=MsG0380016573.01.T01
Chr3 exon 85291585 85291684 85291585 ID=MsG0380016573.01.T01:exon:14494;Parent=MsG0380016573.01.T01
Chr3 five_prime_UTR 85291256 85291333 85291256 ID=MsG0380016573.01.T01:five_prime_utr;Parent=MsG0380016573.01.T01
Chr3 five_prime_UTR 85291585 85291597 85291585 ID=MsG0380016573.01.T01:five_prime_utr;Parent=MsG0380016573.01.T01
Chr3 CDS 85291598 85291684 85291598 ID=MsG0380016573.01.T01:cds;Parent=MsG0380016573.01.T01
Chr3 CDS 85293365 85293431 85293365 ID=MsG0380016573.01.T01:cds;Parent=MsG0380016573.01.T01
Chr3 CDS 85293521 85293771 85293521 ID=MsG0380016573.01.T01:cds;Parent=MsG0380016573.01.T01
Chr3 three_prime_UTR 85293772 85294007 85293772 ID=MsG0380016573.01.T01:three_prime_utr;Parent=MsG0380016573.01.T01
Chr3 mRNA 85291522 85294007 85291522 ID=MsG0380016573.01.T02;Parent=MsG0380016573.01;Name=MsG0380016573.01.T02;_AED=0.49;_eAED=0.49;_QI=76|1|1|1|1|1|3|236|134
Chr3 exon 85291522 85291684 85291522 ID=MsG0380016573.01.T02:exon:14497;Parent=MsG0380016573.01.T02
Chr3 five_prime_UTR 85291522 85291597 85291522 ID=MsG0380016573.01.T02:five_prime_utr;Parent=MsG0380016573.01.T02
Chr3 CDS 85291598 85291684 85291598 ID=MsG0380016573.01.T02:cds;Parent=MsG0380016573.01.T02
Chr3 CDS 85293365 85293431 85293365 ID=MsG0380016573.01.T02:cds;Parent=MsG0380016573.01.T02
Chr3 CDS 85293521 85293771 85293521 ID=MsG0380016573.01.T02:cds;Parent=MsG0380016573.01.T02
Chr3 three_prime_UTR 85293772 85294007 85293772 ID=MsG0380016573.01.T02:three_prime_utr;Parent=MsG0380016573.01.T02
Gene Sequence

>MsG0380016573.01.T01

ATGGCTTCAGATCCAAAGCTTCACACTTTCGATGATGTGTCAAAGCACAACAAGACCAAAGATTGCTGGCTTATTCTCTCTGGAAAGGTGTACGATGTCACCCCTTTTATGGAGGATCATCCCGGAGGTGATGAGGTTCTGTTGTCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTGGGACACAGTGATTCTGCTAGAGAAATGATGGACAAATACTACATTGGTGAGATTGATCCATCCACTGTTCCCCTTAAGCGCACCTACGTTCCACCTCAGCAATCTCAGTACAATCCGGACAAGACTTCGGAATTTGTGATCAAGATTTTGCAGTTCCTGGTGCCTCTCCTGATATTGGGCTTAGCCTTTGTTGTCAGAAACTACACCAAGAAAGAGTAG

>MsG0380016573.01.T02

ATGGCTTCAGATCCAAAGCTTCACACTTTCGATGATGTGTCAAAGCACAACAAGACCAAAGATTGCTGGCTTATTCTCTCTGGAAAGGTGTACGATGTCACCCCTTTTATGGAGGATCATCCCGGAGGTGATGAGGTTCTGTTGTCTGCAACAGGGAAAGATGCAACCAATGATTTTGAAGATGTGGGACACAGTGATTCTGCTAGAGAAATGATGGACAAATACTACATTGGTGAGATTGATCCATCCACTGTTCCCCTTAAGCGCACCTACGTTCCACCTCAGCAATCTCAGTACAATCCGGACAAGACTTCGGAATTTGTGATCAAGATTTTGCAGTTCCTGGTGCCTCTCCTGATATTGGGCTTAGCCTTTGTTGTCAGAAACTACACCAAGAAAGAGTAG
Protein sequence

>MsG0380016573.01.T01

MASDPKLHTFDDVSKHNKTKDCWLILSGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKRTYVPPQQSQYNPDKTSEFVIKILQFLVPLLILGLAFVVRNYTKKE*

>MsG0380016573.01.T02

MASDPKLHTFDDVSKHNKTKDCWLILSGKVYDVTPFMEDHPGGDEVLLSATGKDATNDFEDVGHSDSAREMMDKYYIGEIDPSTVPLKRTYVPPQQSQYNPDKTSEFVIKILQFLVPLLILGLAFVVRNYTKKE*