AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003777.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003777.01.T01 MTR_1g069455 97.761 402 3 1 1 402 1 396 0.0 808
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003777.01.T01 AT2G20360 72.549 408 100 2 1 402 1 402 0.0 588

Find 127 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAGATTCTTTGGATATT+TGG 0.087912 1:+68102180 MsG0180003777.01.T01:exon
GGTATTGTTGCTACAGTATT+TGG 0.176651 1:+68097747 MsG0180003777.01.T01:CDS
TATATTTCTAATTGTAATAT+TGG 0.206694 1:+68102390 MsG0180003777.01.T01:three_prime_UTR
TTCCCCTCTTCCAGCTAAAA+TGG 0.225530 1:+68097907 MsG0180003777.01.T01:intron
GATACTGTTGTTTCAGAAAA+TGG 0.260319 1:+68101912 MsG0180003777.01.T01:CDS
TGCTTGGCCATAAGATTCTT+TGG 0.262284 1:+68102172 MsG0180003777.01.T01:exon
CTCAAACTGATGGGAGATTT+AGG 0.273882 1:+68097980 MsG0180003777.01.T01:CDS
AGGAAAGGAGGTCCACAATT+TGG 0.287108 1:+68102119 MsG0180003777.01.T01:CDS
AATGTTGTCATCAATCTTAT+TGG 0.297373 1:+68098218 MsG0180003777.01.T01:CDS
GCTTTGACATTCAATGATCT+TGG 0.312787 1:+68102044 MsG0180003777.01.T01:intron
CGCACTTACTACAGCTTTGA+AGG 0.326734 1:+68100478 MsG0180003777.01.T01:CDS
CTCTATCTTTCTTTCTGCTT+AGG 0.328221 1:+68095977 MsG0180003777.01.T01:five_prime_UTR
CATCTCCGTCATCTTCTTCC+AGG 0.347967 1:+68099498 MsG0180003777.01.T01:CDS
ATCTCTTGGATTGAATTTCA+TGG 0.355428 1:-68098162 None:intergenic
CAAATATCCAAAGAATCTTA+TGG 0.368791 1:-68102179 None:intergenic
GAATCTTATGGCCAAGCATC+TGG 0.371711 1:-68102167 None:intergenic
TTGAGTTTCTTATTCAATAC+AGG 0.373774 1:+68102099 MsG0180003777.01.T01:CDS
TATTGAATAAGAAACTCAAT+AGG 0.374905 1:-68102095 None:intergenic
TTCATTCAAGTTTCTTGCTT+AGG 0.377623 1:+68099473 MsG0180003777.01.T01:CDS
AACGTACAGTGATCGGAAAT+TGG 0.396230 1:-68096107 None:intergenic
ACATGCCTTTGCAAGTTTCT+CGG 0.396293 1:-68098395 None:intergenic
CGTTATGTTGTTCAACAACT+TGG 0.400553 1:+68097789 MsG0180003777.01.T01:CDS
TTCAAACCTGCTGTTATGAT+TGG 0.400908 1:+68100198 MsG0180003777.01.T01:CDS
TTAACCGAACTCTCATCTCT+TGG 0.405795 1:-68098176 None:intergenic
TTCTCTTAAAACCGCTTCTT+CGG 0.413086 1:-68099543 None:intergenic
CACCTCGTCCGCAAGGGTAC+TGG 0.415422 1:+68096260 MsG0180003777.01.T01:CDS
GTGATCGGAAATTGGATAGA+TGG 0.415879 1:-68096099 None:intergenic
ATTTCACTATTTAAAAGTGA+TGG 0.420598 1:+68102246 MsG0180003777.01.T01:three_prime_UTR
TTATTCCATTGATGGGGAAC+GGG 0.424922 1:+68100274 MsG0180003777.01.T01:CDS
GTGTTCCCGTTCCCCATCAA+TGG 0.437487 1:-68100279 None:intergenic
CATGGGAAAGATTTATGAGT+TGG 0.439298 1:+68100514 MsG0180003777.01.T01:CDS
AAAGAAAGATAGAGGAGAGA+AGG 0.441180 1:-68095968 None:intergenic
GTATGGCTTTATTCCATTGA+TGG 0.447334 1:+68100266 MsG0180003777.01.T01:CDS
CAAGCCTGAGATGTTCAATC+TGG 0.448470 1:+68101866 MsG0180003777.01.T01:CDS
GGGTATCCCTTCAGCTTATG+AGG 0.451601 1:-68102074 None:intergenic
TATGGCTTTATTCCATTGAT+GGG 0.454056 1:+68100267 MsG0180003777.01.T01:CDS
TGATCCAGATTGAACATCTC+AGG 0.462048 1:-68101870 None:intergenic
CACCAGTACCCTTGCGGACG+AGG 0.466010 1:-68096262 None:intergenic
AACATCTCAGGCTTGGGTAG+TGG 0.467679 1:-68101858 None:intergenic
TCCCCTCTTCCAGCTAAAAT+GGG 0.469008 1:+68097908 MsG0180003777.01.T01:intron
CTTCTTCTTCTTCGTTGTTG+TGG 0.472020 1:+68096005 MsG0180003777.01.T01:five_prime_UTR
TTTCACTATTTAAAAGTGAT+GGG 0.472597 1:+68102247 MsG0180003777.01.T01:three_prime_UTR
TGGTTCCACAATCAGTGAAA+AGG 0.476569 1:+68102139 MsG0180003777.01.T01:CDS
CAGATTGAACATCTCAGGCT+TGG 0.480423 1:-68101865 None:intergenic
ATGGGAAAGATTTATGAGTT+GGG 0.482786 1:+68100515 MsG0180003777.01.T01:CDS
TCTCTTGGATTGAATTTCAT+GGG 0.486818 1:-68098161 None:intergenic
TCCTCGTCATCTCAAACTGA+TGG 0.489830 1:+68097970 MsG0180003777.01.T01:CDS
GCGACATCAACAACATATAC+AGG 0.496145 1:-68100452 None:intergenic
TTTGGAGCGACTGGATTCCT+TGG 0.497464 1:+68097765 MsG0180003777.01.T01:CDS
ACTACAGCTTTGAAGGATGA+TGG 0.500018 1:+68100485 MsG0180003777.01.T01:CDS
CTAAGCAGAAAGAAAGATAG+AGG 0.500808 1:-68095976 None:intergenic
TCAGGCTTGGGTAGTGGAAA+GGG 0.500814 1:-68101852 None:intergenic
GAGCCCATCGGTTTAAAATC+CGG 0.504754 1:-68100230 None:intergenic
ACCAACGCCCTTGGTAGCTA+TGG 0.505183 1:-68096237 None:intergenic
GCTACAGTATTTGGAGCGAC+TGG 0.506649 1:+68097756 MsG0180003777.01.T01:CDS
AGATTGAACATCTCAGGCTT+GGG 0.507417 1:-68101864 None:intergenic
TTTATTCCATTGATGGGGAA+CGG 0.514391 1:+68100273 MsG0180003777.01.T01:CDS
CCTACCTTTGCAATGGGAAG+AGG 0.515909 1:-68101260 None:intergenic
ATTGAATAAGAAACTCAATA+GGG 0.516859 1:-68102094 None:intergenic
AAGAAAGATAGAGGAGAGAA+GGG 0.521219 1:-68095967 None:intergenic
GATGAACCTACCTTTGCAAT+GGG 0.521387 1:-68101266 None:intergenic
CAAGCCATTACAAGACGCTT+AGG 0.521934 1:+68096041 MsG0180003777.01.T01:CDS
CAATCCAAGAGATGAGAGTT+CGG 0.523030 1:+68098172 MsG0180003777.01.T01:CDS
CGTTGGTCACCTCGTCCGCA+AGG 0.526105 1:+68096253 MsG0180003777.01.T01:CDS
AGATACCTGATTTCTGAAAA+CGG 0.528505 1:+68102347 MsG0180003777.01.T01:three_prime_UTR
AAGGATGATGGCACTAGCAT+GGG 0.529603 1:+68100497 MsG0180003777.01.T01:CDS
AAAAGGTCTCTCCAGATGCT+TGG 0.530517 1:+68102156 MsG0180003777.01.T01:CDS
GTGACCTAAGCGTCTTGTAA+TGG 0.531263 1:-68096045 None:intergenic
ACCATAGCTACCAAGGGCGT+TGG 0.531306 1:+68096236 MsG0180003777.01.T01:CDS
GAAGGATGATGGCACTAGCA+TGG 0.534727 1:+68100496 MsG0180003777.01.T01:CDS
CTCAGGCTTGGGTAGTGGAA+AGG 0.535156 1:-68101853 None:intergenic
GACGAGGTGACCAACGCCCT+TGG 0.535633 1:-68096246 None:intergenic
GATGGATTTGAGCAAAGTTG+AGG 0.536111 1:-68096081 None:intergenic
CTGGTGGAAGATCATCTGTC+AGG 0.542372 1:+68096279 MsG0180003777.01.T01:CDS
TTTCTTATTCAATACAGGAA+AGG 0.545150 1:+68102104 MsG0180003777.01.T01:CDS
TGGAGAAAACGTACAGTGAT+CGG 0.549239 1:-68096114 None:intergenic
CTTATTCAATACAGGAAAGG+AGG 0.550616 1:+68102107 MsG0180003777.01.T01:CDS
CTTCCTTTCATAATGTAGAG+TGG 0.551559 1:+68102290 MsG0180003777.01.T01:three_prime_UTR
CATCAACAACATATACAGGT+TGG 0.551798 1:-68100448 None:intergenic
TGATGCACAGTAAAGATCTC+AGG 0.551865 1:-68100542 None:intergenic
GAGTTCGGTTAAAGCTGTAA+TGG 0.552381 1:+68098187 MsG0180003777.01.T01:CDS
TGCTTTACATCTAAGCATCC+TGG 0.553596 1:-68099516 None:intergenic
TTCCTTTCATAATGTAGAGT+GGG 0.553886 1:+68102291 MsG0180003777.01.T01:three_prime_UTR
TTATGATTGGTACAGAGGAC+CGG 0.553938 1:+68100211 MsG0180003777.01.T01:CDS
CAGTATCTGCAGCATAAGCA+TGG 0.558033 1:-68101896 None:intergenic
TTGTTTAAGAATAATTCCCT+TGG 0.561755 1:-68101825 None:intergenic
AATTGTTCCTCATAAGCTGA+AGG 0.563068 1:+68102067 MsG0180003777.01.T01:CDS
CTGATTGTGGAACCAAATTG+TGG 0.564138 1:-68102131 None:intergenic
GATCTTTACTGTGCATCAGT+TGG 0.564435 1:+68100547 MsG0180003777.01.T01:CDS
TGATGAACCTACCTTTGCAA+TGG 0.565256 1:-68101267 None:intergenic
AACGCCCTTGGTAGCTATGG+TGG 0.571236 1:-68096234 None:intergenic
CTCGTCCGCAAGGGTACTGG+TGG 0.573179 1:+68096263 MsG0180003777.01.T01:CDS
CCTCGTCATCTCAAACTGAT+GGG 0.579728 1:+68097971 MsG0180003777.01.T01:CDS
TAAAGCAGCTGCCGAAGAAG+CGG 0.582275 1:+68099532 MsG0180003777.01.T01:CDS
CCCATCAGTTTGAGATGACG+AGG 0.583104 1:-68097971 None:intergenic
CAAGTCTTAGTTCCTTTCCG+AGG 0.587066 1:+68097935 MsG0180003777.01.T01:CDS
TCAGGCATTGGCAACACCAA+GGG 0.591377 1:+68101809 MsG0180003777.01.T01:intron
TCTGTACCAATCATAACAGC+AGG 0.591466 1:-68100204 None:intergenic
AATAAGATTGATGACAACAT+TGG 0.593727 1:-68098216 None:intergenic
GTTGGTCACCTCGTCCGCAA+GGG 0.597215 1:+68096254 MsG0180003777.01.T01:CDS
TACCCACTCTACATTATGAA+AGG 0.597454 1:-68102293 None:intergenic
TGTATGATGTGATTCGTGAA+TGG 0.600267 1:+68101219 MsG0180003777.01.T01:CDS
GACAAGAAACTACAGCTATG+AGG 0.603451 1:+68098354 MsG0180003777.01.T01:CDS
GAGGAGAATCTTCAGAGCCT+CGG 0.606854 1:-68097952 None:intergenic
TTCAGGCATTGGCAACACCA+AGG 0.608020 1:+68101808 MsG0180003777.01.T01:intron
TTGCAGATTTCAAAAGAGCA+TGG 0.608752 1:+68099437 MsG0180003777.01.T01:intron
ATGGCTTTATTCCATTGATG+GGG 0.613173 1:+68100268 MsG0180003777.01.T01:CDS
TGTTTCCACCATAGCTACCA+AGG 0.613863 1:+68096229 MsG0180003777.01.T01:CDS
TGCTGTTATGATTGGTACAG+AGG 0.620794 1:+68100206 MsG0180003777.01.T01:CDS
ATTGTTCCTCATAAGCTGAA+GGG 0.626784 1:+68102068 MsG0180003777.01.T01:CDS
ATTATCGTCATCAACAAACA+TGG 0.627156 1:-68102317 None:intergenic
AACAGCAGGTTTGAAGATCG+TGG 0.629121 1:-68100190 None:intergenic
ATCTTCCACCAGTACCCTTG+CGG 0.629738 1:-68096268 None:intergenic
GAATCTTCAGAGCCTCGGAA+AGG 0.631860 1:-68097947 None:intergenic
CGTGCCTCTTCCCATTGCAA+AGG 0.632358 1:+68101256 MsG0180003777.01.T01:CDS
GTTTCCACCATAGCTACCAA+GGG 0.640277 1:+68096230 MsG0180003777.01.T01:CDS
ACTGATGGGAGATTTAGGAC+AGG 0.641943 1:+68097985 MsG0180003777.01.T01:CDS
GGAAAGATTTATGAGTTGGG+TGG 0.647633 1:+68100518 MsG0180003777.01.T01:CDS
AGCATCCTGGAAGAAGATGA+CGG 0.648230 1:-68099503 None:intergenic
AGAGGCACGTTTACATATCG+AGG 0.650622 1:-68101242 None:intergenic
AAGAGCATGGTGGTATCATG+AGG 0.653818 1:+68099450 MsG0180003777.01.T01:CDS
CTTCAAAGCTGTAGTAAGTG+CGG 0.655970 1:-68100477 None:intergenic
TCTTTGCAAAATGAGCCCAT+CGG 0.662210 1:-68100242 None:intergenic
CATGGCCGAGAAACTTGCAA+AGG 0.680714 1:+68098390 MsG0180003777.01.T01:CDS
GTTGAACAACATAACGACCA+AGG 0.681916 1:-68097782 None:intergenic
TGAGGAAGTGCACTATCACA+TGG 0.689656 1:+68098372 MsG0180003777.01.T01:CDS
CAGATTTCAAAAGAGCATGG+TGG 0.718621 1:+68099440 MsG0180003777.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTTCTAATTGTAATAT+TGG + Chr1:68102390-68102409 MsG0180003777.01.T01:three_prime_UTR 10.0%
!! AAAAAAATGAAGGATAAATT+TGG - Chr1:68100985-68101004 None:intergenic 15.0%
!! AAAAGAATATTAAAATTACG+AGG - Chr1:68096884-68096903 None:intergenic 15.0%
!! CCTATATTAAATATGTAATT+GGG + Chr1:68101469-68101488 MsG0180003777.01.T01:intron 15.0%
!! CTATATTAAATATGTAATTG+GGG + Chr1:68101470-68101489 MsG0180003777.01.T01:intron 15.0%
!! GTTAATTATATATTTGTATG+CGG + Chr1:68096946-68096965 MsG0180003777.01.T01:intron 15.0%
!! TCCTATATTAAATATGTAAT+TGG + Chr1:68101468-68101487 MsG0180003777.01.T01:intron 15.0%
!!! AAAATGTTTAAGATTTGTTT+AGG + Chr1:68097291-68097310 MsG0180003777.01.T01:intron 15.0%
!!! AATTTTAATATTCTTTTGTG+AGG + Chr1:68096887-68096906 MsG0180003777.01.T01:intron 15.0%
!!! ATTTTAATATTCTTTTGTGA+GGG + Chr1:68096888-68096907 MsG0180003777.01.T01:intron 15.0%
!!! GTATTAAAATCACTTTTTTT+AGG + Chr1:68099261-68099280 MsG0180003777.01.T01:intron 15.0%
!!! GTTGTTTTAGTATTTTATTT+TGG + Chr1:68101664-68101683 MsG0180003777.01.T01:intron 15.0%
!!! TAACAGATTTTTTAAAGAAA+AGG + Chr1:68099159-68099178 MsG0180003777.01.T01:intron 15.0%
!!! TTTTAAATAGTGAAATGAAA+TGG - Chr1:68102242-68102261 None:intergenic 15.0%
!! AAAAATGGAATTGAGAATTA+AGG - Chr1:68096154-68096173 None:intergenic 20.0%
!! AAGAATCTATTGTGTATTAT+GGG + Chr1:68098709-68098728 MsG0180003777.01.T01:intron 20.0%
!! ATACGATATAATCTAATGTT+AGG - Chr1:68096714-68096733 None:intergenic 20.0%
!! ATACTTACTCAAAAAAGTAA+TGG - Chr1:68097645-68097664 None:intergenic 20.0%
!! ATATTCATTTCTCTTAGTTT+AGG + Chr1:68096338-68096357 MsG0180003777.01.T01:intron 20.0%
!! ATCAAATATCAGATCAAATT+TGG - Chr1:68099402-68099421 None:intergenic 20.0%
!! ATTGAATAAGAAACTCAATA+GGG - Chr1:68102097-68102116 None:intergenic 20.0%
!! ATTTCACTATTTAAAAGTGA+TGG + Chr1:68102246-68102265 MsG0180003777.01.T01:three_prime_UTR 20.0%
!! CAAAAAAAGAAAAATGATTC+AGG - Chr1:68102207-68102226 None:intergenic 20.0%
!! CATATTTAATATAGGATTAC+TGG - Chr1:68101464-68101483 None:intergenic 20.0%
!! CCCAATTACATATTTAATAT+AGG - Chr1:68101472-68101491 None:intergenic 20.0%
!! CGAAACTAGAAATAAATTAT+TGG - Chr1:68099604-68099623 None:intergenic 20.0%
!! TAAACTGAGAATTAAGATTA+AGG - Chr1:68096914-68096933 None:intergenic 20.0%
!! TAAGCTTTCTTAACAATATT+CGG - Chr1:68097856-68097875 None:intergenic 20.0%
!! TACGATATAATCTAATGTTA+GGG - Chr1:68096713-68096732 None:intergenic 20.0%
!! TATTGAATAAGAAACTCAAT+AGG - Chr1:68102098-68102117 None:intergenic 20.0%
!! TCAAATATCAGATCAAATTT+GGG - Chr1:68099401-68099420 None:intergenic 20.0%
!! TTAGTTAATGATATTTGAAG+AGG + Chr1:68101067-68101086 MsG0180003777.01.T01:intron 20.0%
!! TTTAAATCTCTTCGTTAATT+GGG + Chr1:68101027-68101046 MsG0180003777.01.T01:intron 20.0%
!! TTTCACTATTTAAAAGTGAT+GGG + Chr1:68102247-68102266 MsG0180003777.01.T01:three_prime_UTR 20.0%
!! TTTGTAATTTCAGAAACAAA+AGG - Chr1:68100730-68100749 None:intergenic 20.0%
!!! AATCTTTTTATGTTAAATGC+AGG + Chr1:68101187-68101206 MsG0180003777.01.T01:intron 20.0%
!!! AATTGATTCGATAATCATTT+CGG - Chr1:68098879-68098898 None:intergenic 20.0%
!!! ATGTCTCATATCATTTTTTT+AGG + Chr1:68096759-68096778 MsG0180003777.01.T01:intron 20.0%
!!! ATTCTTTTGCTTTTATCAAA+AGG - Chr1:68100912-68100931 None:intergenic 20.0%
!!! ATTTGATAAGTTTTCCTAAT+TGG + Chr1:68097177-68097196 MsG0180003777.01.T01:intron 20.0%
!!! GATGTTATATTTTTTATGCT+TGG - Chr1:68098757-68098776 None:intergenic 20.0%
!!! TACTTTTTTGAGTAAGTATA+GGG + Chr1:68097646-68097665 MsG0180003777.01.T01:intron 20.0%
!!! TAGTATTTTATTTTGGAACA+AGG + Chr1:68101671-68101690 MsG0180003777.01.T01:intron 20.0%
!!! TATCCTTCATTTTTTTAAGA+GGG + Chr1:68100989-68101008 MsG0180003777.01.T01:intron 20.0%
!!! TGGTAAAAAGTATTATTGAT+TGG - Chr1:68099798-68099817 None:intergenic 20.0%
!!! TTACTTTTTTGAGTAAGTAT+AGG + Chr1:68097645-68097664 MsG0180003777.01.T01:intron 20.0%
!!! TTATCCTTCATTTTTTTAAG+AGG + Chr1:68100988-68101007 MsG0180003777.01.T01:intron 20.0%
!!! TTCTTTTGCTTTTATCAAAA+GGG - Chr1:68100911-68100930 None:intergenic 20.0%
!!! TTTTAAATCTCTTCGTTAAT+TGG + Chr1:68101026-68101045 MsG0180003777.01.T01:intron 20.0%
! AAGACATTAACATGATGATA+TGG - Chr1:68098450-68098469 None:intergenic 25.0%
! AAGCTTTCTTAACAATATTC+GGG - Chr1:68097855-68097874 None:intergenic 25.0%
! AAGTAAATTTCAATGCCAAA+AGG - Chr1:68100386-68100405 None:intergenic 25.0%
! AATGTTGTCATCAATCTTAT+TGG + Chr1:68098218-68098237 MsG0180003777.01.T01:CDS 25.0%
! ACAATTAAGAGTCAATACTT+GGG - Chr1:68099821-68099840 None:intergenic 25.0%
! ACTAATGAAATGCCATTAAT+GGG + Chr1:68101324-68101343 MsG0180003777.01.T01:intron 25.0%
! ACTTACTTTCCATTCTAATA+AGG - Chr1:68098068-68098087 None:intergenic 25.0%
! ACTTATCAAATCTTCTTCTA+TGG - Chr1:68097168-68097187 None:intergenic 25.0%
! AGAAAAGGTGAATTTCATTA+TGG + Chr1:68099174-68099193 MsG0180003777.01.T01:intron 25.0%
! AGACATTAACATGATGATAT+GGG - Chr1:68098449-68098468 None:intergenic 25.0%
! ATTAAATATGTAATTGGGGA+GGG + Chr1:68101474-68101493 MsG0180003777.01.T01:intron 25.0%
! CAAATATCCAAAGAATCTTA+TGG - Chr1:68102182-68102201 None:intergenic 25.0%
! CAAGAATCTATTGTGTATTA+TGG + Chr1:68098708-68098727 MsG0180003777.01.T01:intron 25.0%
! CACTAAGCAAATAAAATTCT+CGG - Chr1:68098505-68098524 None:intergenic 25.0%
! CATAAGATTCTTTGGATATT+TGG + Chr1:68102180-68102199 MsG0180003777.01.T01:exon 25.0%
! CTAATTGTAATTGCAGATTA+TGG + Chr1:68096188-68096207 MsG0180003777.01.T01:intron 25.0%
! GATGGAAACAAAAATGATTA+AGG + Chr1:68099727-68099746 MsG0180003777.01.T01:intron 25.0%
! GTGTTAAATGTTCTTGTAAA+TGG + Chr1:68097687-68097706 MsG0180003777.01.T01:intron 25.0%
! TAAAAAGATTCAACATCGTT+AGG - Chr1:68101177-68101196 None:intergenic 25.0%
! TAAAAAGGGACAACAAAATT+TGG + Chr1:68101096-68101115 MsG0180003777.01.T01:intron 25.0%
! TAAAGATTAGGATCATACTT+CGG + Chr1:68097576-68097595 MsG0180003777.01.T01:intron 25.0%
! TAAATAATTGAAACCCTGTT+AGG - Chr1:68098844-68098863 None:intergenic 25.0%
! TACTAATGAAATGCCATTAA+TGG + Chr1:68101323-68101342 MsG0180003777.01.T01:intron 25.0%
! TATTAAATATGTAATTGGGG+AGG + Chr1:68101473-68101492 MsG0180003777.01.T01:intron 25.0%
! TGAAAAAAAGCTGTAACAAA+GGG - Chr1:68099072-68099091 None:intergenic 25.0%
! TGAAGAGGTTCTTATAAAAA+GGG + Chr1:68101082-68101101 MsG0180003777.01.T01:intron 25.0%
! TGACATAATTTACTCTTAGT+AGG - Chr1:68101741-68101760 None:intergenic 25.0%
! TTAAATCTCTTCGTTAATTG+GGG + Chr1:68101028-68101047 MsG0180003777.01.T01:intron 25.0%
! TTCATAATATCACACTTAAC+AGG + Chr1:68100167-68100186 MsG0180003777.01.T01:intron 25.0%
! TTCTTTCTTCCTTATTAGAA+TGG + Chr1:68098056-68098075 MsG0180003777.01.T01:intron 25.0%
! TTGAAAAAAAGCTGTAACAA+AGG - Chr1:68099073-68099092 None:intergenic 25.0%
! TTGAAGAGGTTCTTATAAAA+AGG + Chr1:68101081-68101100 MsG0180003777.01.T01:intron 25.0%
! TTGAATCATACAATAATGAG+AGG + Chr1:68099038-68099057 MsG0180003777.01.T01:intron 25.0%
! TTGAGTTTCTTATTCAATAC+AGG + Chr1:68102099-68102118 MsG0180003777.01.T01:CDS 25.0%
! TTGTTTAAGAATAATTCCCT+TGG - Chr1:68101828-68101847 None:intergenic 25.0%
! TTTATTATTCTATGAGCGAA+TGG + Chr1:68099854-68099873 MsG0180003777.01.T01:intron 25.0%
! TTTCAACAAACAGAAAATGT+CGG - Chr1:68102018-68102037 None:intergenic 25.0%
! TTTCTTATTCAATACAGGAA+AGG + Chr1:68102104-68102123 MsG0180003777.01.T01:CDS 25.0%
!! AATAAGATTGATGACAACAT+TGG - Chr1:68098219-68098238 None:intergenic 25.0%
!! GTTTCGTTTTCATATGTAAA+AGG + Chr1:68099618-68099637 MsG0180003777.01.T01:intron 25.0%
!! TAATTGACTCTTAATTGTCT+TGG + Chr1:68099888-68099907 MsG0180003777.01.T01:intron 25.0%
!! TCATAATCACATACTCATTT+TGG + Chr1:68098299-68098318 MsG0180003777.01.T01:intron 25.0%
!! TGTTTAAGATTTGTTTAGGA+AGG + Chr1:68097295-68097314 MsG0180003777.01.T01:intron 25.0%
!!! ACATTTTTTTCTTCTGTGAA+TGG + Chr1:68100060-68100079 MsG0180003777.01.T01:intron 25.0%
!!! ATCTTGTATTGCTTGTTTTT+TGG + Chr1:68097877-68097896 MsG0180003777.01.T01:intron 25.0%
!!! ATTTTGGCTTATTTGTTTGT+TGG + Chr1:68098315-68098334 MsG0180003777.01.T01:intron 25.0%
!!! TCTTGTATTGCTTGTTTTTT+GGG + Chr1:68097878-68097897 MsG0180003777.01.T01:intron 25.0%
!!! TTTTTGTCTCTTGTTTTCAT+TGG + Chr1:68099698-68099717 MsG0180003777.01.T01:intron 25.0%
!!! TTTTTTAGGCTCATTATCAT+AGG + Chr1:68096773-68096792 MsG0180003777.01.T01:intron 25.0%
AAAGACCTTGTGATTAAGTA+AGG - Chr1:68101944-68101963 None:intergenic 30.0%
AAATATAGCCTTTCTTTGCT+AGG - Chr1:68099680-68099699 None:intergenic 30.0%
AACAAGAGATATTGCTTGTT+AGG + Chr1:68100612-68100631 MsG0180003777.01.T01:intron 30.0%
AATCTGGGCATATTAATCAT+TGG - Chr1:68098138-68098157 None:intergenic 30.0%
AATTGCTGAGATGTTAAACT+CGG - Chr1:68100866-68100885 None:intergenic 30.0%
ACCAAAAATATGCCCATTAA+TGG - Chr1:68101339-68101358 None:intergenic 30.0%
ACCTCATTAACCTAAAGATT+AGG + Chr1:68097564-68097583 MsG0180003777.01.T01:intron 30.0%
ACGATTCATCTTCTTATCTT+AGG + Chr1:68096819-68096838 MsG0180003777.01.T01:intron 30.0%
AGATTCTTGAGAGAACATTA+TGG - Chr1:68098697-68098716 None:intergenic 30.0%
AGCAAGTAAACCAAGTAAAA+AGG - Chr1:68097620-68097639 None:intergenic 30.0%
AGTGCTGTAACTAATTAAGT+TGG - Chr1:68100802-68100821 None:intergenic 30.0%
ATCTCTTGGATTGAATTTCA+TGG - Chr1:68098165-68098184 None:intergenic 30.0%
ATGCACAGCTAAAAGAAAAA+GGG - Chr1:68101698-68101717 None:intergenic 30.0%
ATGGCTAATGTCCAAAATAT+AGG - Chr1:68096983-68097002 None:intergenic 30.0%
ATGGGAAAGATTTATGAGTT+GGG + Chr1:68100515-68100534 MsG0180003777.01.T01:CDS 30.0%
ATGGTGTTCGATTAAAAAGA+TGG + Chr1:68096647-68096666 MsG0180003777.01.T01:intron 30.0%
ATTATCGTCATCAACAAACA+TGG - Chr1:68102320-68102339 None:intergenic 30.0%
ATTGAAAAATGGAAGCAATG+AGG - Chr1:68096309-68096328 None:intergenic 30.0%
CAAAGTTAACGAACAGTTAA+TGG - Chr1:68097077-68097096 None:intergenic 30.0%
CATTAACTGTTCGTTAACTT+TGG + Chr1:68097075-68097094 MsG0180003777.01.T01:intron 30.0%
GAAAAAAAGCTGTAACAAAG+GGG - Chr1:68099071-68099090 None:intergenic 30.0%
GAAGAAAGAAAAGACAAAAG+TGG - Chr1:68098046-68098065 None:intergenic 30.0%
GAAGTATGATCCTAATCTTT+AGG - Chr1:68097577-68097596 None:intergenic 30.0%
GACAACAAAATTTGGCAAAA+GGG + Chr1:68101104-68101123 MsG0180003777.01.T01:intron 30.0%
GACAATTAAGAGTCAATACT+TGG - Chr1:68099822-68099841 None:intergenic 30.0%
GTCATGATATAACTTCAAGA+AGG - Chr1:68097396-68097415 None:intergenic 30.0%
TAAATCTCTTCGTTAATTGG+GGG + Chr1:68101029-68101048 MsG0180003777.01.T01:intron 30.0%
TAAATGTTCTTGTAAATGGC+TGG + Chr1:68097691-68097710 MsG0180003777.01.T01:intron 30.0%
TCTATGGATAAGTTAAGAGA+TGG - Chr1:68097152-68097171 None:intergenic 30.0%
TCTCACATAATCTCACATAA+TGG + Chr1:68098256-68098275 MsG0180003777.01.T01:intron 30.0%
TCTCCCTCTTAAAAAAATGA+AGG - Chr1:68100995-68101014 None:intergenic 30.0%
TCTCTTGGATTGAATTTCAT+GGG - Chr1:68098164-68098183 None:intergenic 30.0%
TGATTAGCACAAATAGTGAA+TGG - Chr1:68098114-68098133 None:intergenic 30.0%
TGCGTTAAAAAAATGAGCTA+AGG - Chr1:68101440-68101459 None:intergenic 30.0%
TTAAGGATGATGCATTACAT+TGG - Chr1:68096137-68096156 None:intergenic 30.0%
TTAGAATGGAAAGTAAGTAG+TGG + Chr1:68098070-68098089 MsG0180003777.01.T01:intron 30.0%
TTCCTTTCATAATGTAGAGT+GGG + Chr1:68102291-68102310 MsG0180003777.01.T01:three_prime_UTR 30.0%
TTTGCTTAGTGTTTGTACAT+TGG + Chr1:68098514-68098533 MsG0180003777.01.T01:intron 30.0%
! AATGTATGCTTGCAGTTTTA+AGG + Chr1:68097432-68097451 MsG0180003777.01.T01:intron 30.0%
! AGATACCTGATTTCTGAAAA+CGG + Chr1:68102347-68102366 MsG0180003777.01.T01:three_prime_UTR 30.0%
! AGTGAGGTATTTGAATTTGA+TGG + Chr1:68096402-68096421 MsG0180003777.01.T01:intron 30.0%
! ATCAAAAGGGTCTTGTATAT+AGG - Chr1:68100898-68100917 None:intergenic 30.0%
! CTTCTTTTCACCTTTTTACT+TGG + Chr1:68097607-68097626 MsG0180003777.01.T01:intron 30.0%
! GCAAAAGGGTCTTATAAATA+GGG + Chr1:68101118-68101137 MsG0180003777.01.T01:intron 30.0%
! GCGTTCTGAATTAATAGAAA+TGG + Chr1:68097498-68097517 MsG0180003777.01.T01:intron 30.0%
! TAGTTAGTGATTCTTCCTTT+TGG + Chr1:68100368-68100387 MsG0180003777.01.T01:intron 30.0%
! TCAAAAGGGTCTTGTATATA+GGG - Chr1:68100897-68100916 None:intergenic 30.0%
! TCCTAATCTTTAGGTTAATG+AGG - Chr1:68097568-68097587 None:intergenic 30.0%
! TTCATTCAAGTTTCTTGCTT+AGG + Chr1:68099473-68099492 MsG0180003777.01.T01:CDS 30.0%
!! GATACTGTTGTTTCAGAAAA+TGG + Chr1:68101912-68101931 MsG0180003777.01.T01:CDS 30.0%
!! GTATTGACTCTTAATTGTCT+TGG + Chr1:68099823-68099842 MsG0180003777.01.T01:intron 30.0%
!! TATGGCTTTATTCCATTGAT+GGG + Chr1:68100267-68100286 MsG0180003777.01.T01:CDS 30.0%
!! TTTTGAGTAAGTATAGGGTT+CGG + Chr1:68097651-68097670 MsG0180003777.01.T01:intron 30.0%
!! TTTTTCTTTTAGCTGTGCAT+GGG + Chr1:68101698-68101717 MsG0180003777.01.T01:intron 30.0%
!!! CAATATCTCTTGTTTTGACA+AGG - Chr1:68100606-68100625 None:intergenic 30.0%
!!! TACTTTTTCAAAATGTCTCC+AGG + Chr1:68099973-68099992 MsG0180003777.01.T01:intron 30.0%
!!! TTTTTTTAGGTCGTACCAAA+CGG + Chr1:68099274-68099293 MsG0180003777.01.T01:intron 30.0%
AAAAGAAAGTCAACTCGACA+TGG + Chr1:68098668-68098687 MsG0180003777.01.T01:intron 35.0%
AAACAAAACCAAGCTTTGCA+AGG - Chr1:68099334-68099353 None:intergenic 35.0%
AAAGAAAGATAGAGGAGAGA+AGG - Chr1:68095971-68095990 None:intergenic 35.0%
AACTCTAAATGTGAGACTTC+TGG - Chr1:68101409-68101428 None:intergenic 35.0%
AAGAAAGATAGAGGAGAGAA+GGG - Chr1:68095970-68095989 None:intergenic 35.0%
AATTGAAACCCTGTTAGGAA+TGG - Chr1:68098839-68098858 None:intergenic 35.0%
AATTGTTCCTCATAAGCTGA+AGG + Chr1:68102067-68102086 MsG0180003777.01.T01:CDS 35.0%
ACTCTAGACCACACAAATAT+AGG - Chr1:68097103-68097122 None:intergenic 35.0%
ACTCTTAATTGTCTTGGTCT+TGG + Chr1:68099829-68099848 MsG0180003777.01.T01:intron 35.0%
ACTTTAGGTGATATCTCCAA+TGG + Chr1:68099002-68099021 MsG0180003777.01.T01:intron 35.0%
AGCAGTGTGTTTATCAACAT+TGG - Chr1:68098605-68098624 None:intergenic 35.0%
AGGTTCAAAGCAGTTTCAAT+GGG + Chr1:68098961-68098980 MsG0180003777.01.T01:intron 35.0%
AGTAAGTAGTGGTATGTTTG+TGG + Chr1:68098081-68098100 MsG0180003777.01.T01:intron 35.0%
AGTGTGTTTATCAACATTGG+AGG - Chr1:68098602-68098621 None:intergenic 35.0%
ATTAAGAGTCAATACTTGGG+TGG - Chr1:68099818-68099837 None:intergenic 35.0%
ATTGCTGAGATGTTAAACTC+GGG - Chr1:68100865-68100884 None:intergenic 35.0%
ATTGTTCCTCATAAGCTGAA+GGG + Chr1:68102068-68102087 MsG0180003777.01.T01:CDS 35.0%
ATTTATTGAATCCGCTCATG+TGG + Chr1:68096462-68096481 MsG0180003777.01.T01:intron 35.0%
CAACAACTTGGTAAGTTTGT+GGG + Chr1:68097801-68097820 MsG0180003777.01.T01:intron 35.0%
CAACCAATACTCAAATCCAT+TGG - Chr1:68099021-68099040 None:intergenic 35.0%
CACACTGCTAACTGAAATTT+AGG + Chr1:68098616-68098635 MsG0180003777.01.T01:intron 35.0%
CATCAACAACATATACAGGT+TGG - Chr1:68100451-68100470 None:intergenic 35.0%
CATGCACAGCTAAAAGAAAA+AGG - Chr1:68101699-68101718 None:intergenic 35.0%
CATGGGAAAGATTTATGAGT+TGG + Chr1:68100514-68100533 MsG0180003777.01.T01:CDS 35.0%
CATGTGGAGAGATATTTGAA+TGG + Chr1:68096478-68096497 MsG0180003777.01.T01:intron 35.0%
CGTTATGTTGTTCAACAACT+TGG + Chr1:68097789-68097808 MsG0180003777.01.T01:CDS 35.0%
CTAAGCAGAAAGAAAGATAG+AGG - Chr1:68095979-68095998 None:intergenic 35.0%
CTATTGTGTATTATGGGATC+TGG + Chr1:68098715-68098734 MsG0180003777.01.T01:intron 35.0%
CTCTATCTTTCTTTCTGCTT+AGG + Chr1:68095977-68095996 MsG0180003777.01.T01:five_prime_UTR 35.0%
CTTATTCAATACAGGAAAGG+AGG + Chr1:68102107-68102126 MsG0180003777.01.T01:CDS 35.0%
CTTCCTTTCATAATGTAGAG+TGG + Chr1:68102290-68102309 MsG0180003777.01.T01:three_prime_UTR 35.0%
GAATTTCATGGGTACAATCT+GGG - Chr1:68098153-68098172 None:intergenic 35.0%
GAGAGATATTTGAATGGTGT+AGG + Chr1:68096484-68096503 MsG0180003777.01.T01:intron 35.0%
GAGTTCCTTACTTAATCACA+AGG + Chr1:68101936-68101955 MsG0180003777.01.T01:intron 35.0%
GCTTTGACATTCAATGATCT+TGG + Chr1:68102044-68102063 MsG0180003777.01.T01:intron 35.0%
GGACAACAAAATTTGGCAAA+AGG + Chr1:68101103-68101122 MsG0180003777.01.T01:intron 35.0%
GGTATTGTTGCTACAGTATT+TGG + Chr1:68097747-68097766 MsG0180003777.01.T01:CDS 35.0%
GTAAGTAGTGGTATGTTTGT+GGG + Chr1:68098082-68098101 MsG0180003777.01.T01:intron 35.0%
TAATGCAACCATTCCTAACA+GGG + Chr1:68098828-68098847 MsG0180003777.01.T01:intron 35.0%
TACCCACTCTACATTATGAA+AGG - Chr1:68102296-68102315 None:intergenic 35.0%
TACTAGAAGATAGATGCTTC+TGG + Chr1:68100830-68100849 MsG0180003777.01.T01:intron 35.0%
TAGAAAGTTGAGAGAAAGTG+AGG + Chr1:68100672-68100691 MsG0180003777.01.T01:intron 35.0%
TATCACCTAAAGTTTGCAAG+AGG - Chr1:68098995-68099014 None:intergenic 35.0%
TCAACAACTTGGTAAGTTTG+TGG + Chr1:68097800-68097819 MsG0180003777.01.T01:intron 35.0%
TCTGCGCTTTATATGCTATT+TGG + Chr1:68101572-68101591 MsG0180003777.01.T01:intron 35.0%
TGAATTTCATGGGTACAATC+TGG - Chr1:68098154-68098173 None:intergenic 35.0%
TGAGAAACTAAATGTACCTC+AGG - Chr1:68099572-68099591 None:intergenic 35.0%
TGCAGAAACTACATCCAATT+AGG - Chr1:68097194-68097213 None:intergenic 35.0%
TGTATGATGTGATTCGTGAA+TGG + Chr1:68101219-68101238 MsG0180003777.01.T01:CDS 35.0%
TTCAAACCTGCTGTTATGAT+TGG + Chr1:68100198-68100217 MsG0180003777.01.T01:CDS 35.0%
TTCTCTTAAAACCGCTTCTT+CGG - Chr1:68099546-68099565 None:intergenic 35.0%
TTGAGTTATCAGCTTATCTG+AGG + Chr1:68098922-68098941 MsG0180003777.01.T01:intron 35.0%
TTGCAGATTTCAAAAGAGCA+TGG + Chr1:68099437-68099456 MsG0180003777.01.T01:intron 35.0%
TTTAATCGAACACCATTGAG+AGG - Chr1:68096643-68096662 None:intergenic 35.0%
TTTATTCCATTGATGGGGAA+CGG + Chr1:68100273-68100292 MsG0180003777.01.T01:CDS 35.0%
! AAGGGTCTTATAAATAGGGA+CGG + Chr1:68101122-68101141 MsG0180003777.01.T01:intron 35.0%
! ACATGATTGATTTCAGGCAT+TGG + Chr1:68101797-68101816 MsG0180003777.01.T01:intron 35.0%
! ATATGCTATTTGGGGATATC+TGG + Chr1:68101582-68101601 MsG0180003777.01.T01:intron 35.0%
! ATTTGAAGCCTAGCAAAGAA+AGG + Chr1:68099669-68099688 MsG0180003777.01.T01:intron 35.0%
! CATTTAGTTTCTCACTCTCT+AGG + Chr1:68099578-68099597 MsG0180003777.01.T01:intron 35.0%
! CTGCGCTTTATATGCTATTT+GGG + Chr1:68101573-68101592 MsG0180003777.01.T01:intron 35.0%
! CTTTGACTTATCTTCAACTG+AGG - Chr1:68101528-68101547 None:intergenic 35.0%
! GCTCATTTTGCAAAGAAGTA+TGG + Chr1:68100249-68100268 MsG0180003777.01.T01:CDS 35.0%
! GGCAAAAGGGTCTTATAAAT+AGG + Chr1:68101117-68101136 MsG0180003777.01.T01:intron 35.0%
! GTTTTCAGAAATCAGGTATC+TGG - Chr1:68102348-68102367 None:intergenic 35.0%
! TATGCTATTTGGGGATATCT+GGG + Chr1:68101583-68101602 MsG0180003777.01.T01:intron 35.0%
! TATTTGTTTGTTGGCAGGAA+GGG + Chr1:68098324-68098343 MsG0180003777.01.T01:intron 35.0%
! TCTCCAATGGATTTGAGTAT+TGG + Chr1:68099015-68099034 MsG0180003777.01.T01:intron 35.0%
! TGCGCTTTATATGCTATTTG+GGG + Chr1:68101574-68101593 MsG0180003777.01.T01:intron 35.0%
! TGTCTCAGTCTCCTATATTT+TGG + Chr1:68096969-68096988 MsG0180003777.01.T01:intron 35.0%
! TTATTTGTTTGTTGGCAGGA+AGG + Chr1:68098323-68098342 MsG0180003777.01.T01:intron 35.0%
! TTTGAATGGTGTAGGACTTT+TGG + Chr1:68096492-68096511 MsG0180003777.01.T01:intron 35.0%
!! ATGGCTTTATTCCATTGATG+GGG + Chr1:68100268-68100287 MsG0180003777.01.T01:CDS 35.0%
!! CTTTTTCTTTTAGCTGTGCA+TGG + Chr1:68101697-68101716 MsG0180003777.01.T01:intron 35.0%
!! GCCATTAATGGGCATATTTT+TGG + Chr1:68101335-68101354 MsG0180003777.01.T01:intron 35.0%
!! GTATGGCTTTATTCCATTGA+TGG + Chr1:68100266-68100285 MsG0180003777.01.T01:CDS 35.0%
!!! CTCTTGTTTTCATTGGCTTT+TGG + Chr1:68099705-68099724 MsG0180003777.01.T01:intron 35.0%
!!! GGTTTTAAGAGAATTACCTG+AGG + Chr1:68099553-68099572 MsG0180003777.01.T01:CDS 35.0%
!!! TGTTTTCATTGGCTTTTGGA+TGG + Chr1:68099709-68099728 MsG0180003777.01.T01:intron 35.0%
!!! TTTTTTAGGTCGTACCAAAC+GGG + Chr1:68099275-68099294 MsG0180003777.01.T01:intron 35.0%
AACGTACAGTGATCGGAAAT+TGG - Chr1:68096110-68096129 None:intergenic 40.0%
ACAACACAGATACTGCAACA+TGG - Chr1:68097002-68097021 None:intergenic 40.0%
ACATGCCTTTGCAAGTTTCT+CGG - Chr1:68098398-68098417 None:intergenic 40.0%
AGAAGCCTCTTGCAAACTTT+AGG + Chr1:68098987-68099006 MsG0180003777.01.T01:intron 40.0%
AGATTGAACATCTCAGGCTT+GGG - Chr1:68101867-68101886 None:intergenic 40.0%
AGCTAGATAGCTATTGAGTG+AGG + Chr1:68096386-68096405 MsG0180003777.01.T01:intron 40.0%
AGCTTTGCAAGGCTTGATAT+TGG - Chr1:68099323-68099342 None:intergenic 40.0%
AGTGCATCAGTGCTTAAACA+GGG - Chr1:68100011-68100030 None:intergenic 40.0%
ATATCAAGCCTTGCAAAGCT+TGG + Chr1:68099323-68099342 MsG0180003777.01.T01:intron 40.0%
ATGGTGAAATCACTAGCAGT+AGG - Chr1:68097058-68097077 None:intergenic 40.0%
ATTGTATGCCAACGTTGTGT+GGG + Chr1:68101774-68101793 MsG0180003777.01.T01:intron 40.0%
CAAATATCTCTCCACATGAG+CGG - Chr1:68096476-68096495 None:intergenic 40.0%
CAATCCAAGAGATGAGAGTT+CGG + Chr1:68098172-68098191 MsG0180003777.01.T01:CDS 40.0%
CTCAAACTGATGGGAGATTT+AGG + Chr1:68097980-68097999 MsG0180003777.01.T01:CDS 40.0%
CTGATTGTGGAACCAAATTG+TGG - Chr1:68102134-68102153 None:intergenic 40.0%
CTTCAAAGCTGTAGTAAGTG+CGG - Chr1:68100480-68100499 None:intergenic 40.0%
CTTCTTCTTCTTCGTTGTTG+TGG + Chr1:68096005-68096024 MsG0180003777.01.T01:five_prime_UTR 40.0%
CTTGGAAGAGAGCTATTAGT+TGG + Chr1:68101632-68101651 MsG0180003777.01.T01:intron 40.0%
GACAAGAAACTACAGCTATG+AGG + Chr1:68098354-68098373 MsG0180003777.01.T01:CDS 40.0%
GAGGTTCAAAGCAGTTTCAA+TGG + Chr1:68098960-68098979 MsG0180003777.01.T01:intron 40.0%
GAGTTCGGTTAAAGCTGTAA+TGG + Chr1:68098187-68098206 MsG0180003777.01.T01:CDS 40.0%
GATCTTTACTGTGCATCAGT+TGG + Chr1:68100547-68100566 MsG0180003777.01.T01:CDS 40.0%
GATGAACCTACCTTTGCAAT+GGG - Chr1:68101269-68101288 None:intergenic 40.0%
GCGACATCAACAACATATAC+AGG - Chr1:68100455-68100474 None:intergenic 40.0%
GCTCACTTAACATGCACTAA+GGG - Chr1:68099301-68099320 None:intergenic 40.0%
GTAATGCAACCATTCCTAAC+AGG + Chr1:68098827-68098846 MsG0180003777.01.T01:intron 40.0%
GTGATCGGAAATTGGATAGA+TGG - Chr1:68096102-68096121 None:intergenic 40.0%
GTTGAACAACATAACGACCA+AGG - Chr1:68097785-68097804 None:intergenic 40.0%
TCACAATCTCATACGTGACT+TGG + Chr1:68101614-68101633 MsG0180003777.01.T01:intron 40.0%
TCGTGAAGTTGTGAGAGAAA+GGG + Chr1:68098643-68098662 MsG0180003777.01.T01:intron 40.0%
TCTAGCAAGGTCAAAACACT+AGG - Chr1:68096530-68096549 None:intergenic 40.0%
TCTGTACCAATCATAACAGC+AGG - Chr1:68100207-68100226 None:intergenic 40.0%
TCTTTGCAAAATGAGCCCAT+CGG - Chr1:68100245-68100264 None:intergenic 40.0%
TGATCCAGATTGAACATCTC+AGG - Chr1:68101873-68101892 None:intergenic 40.0%
TGATGAACCTACCTTTGCAA+TGG - Chr1:68101270-68101289 None:intergenic 40.0%
TGATGCACAGTAAAGATCTC+AGG - Chr1:68100545-68100564 None:intergenic 40.0%
TGCTAATCCAAGATCTAGCA+AGG - Chr1:68096543-68096562 None:intergenic 40.0%
TGCTGTTATGATTGGTACAG+AGG + Chr1:68100206-68100225 MsG0180003777.01.T01:CDS 40.0%
TGCTTGGCCATAAGATTCTT+TGG + Chr1:68102172-68102191 MsG0180003777.01.T01:exon 40.0%
TGCTTTACATCTAAGCATCC+TGG - Chr1:68099519-68099538 None:intergenic 40.0%
TGGAGAAAACGTACAGTGAT+CGG - Chr1:68096117-68096136 None:intergenic 40.0%
TGGTTCCACAATCAGTGAAA+AGG + Chr1:68102139-68102158 MsG0180003777.01.T01:CDS 40.0%
TTAACCGAACTCTCATCTCT+TGG - Chr1:68098179-68098198 None:intergenic 40.0%
TTATGATTGGTACAGAGGAC+CGG + Chr1:68100211-68100230 MsG0180003777.01.T01:CDS 40.0%
TTATTCCATTGATGGGGAAC+GGG + Chr1:68100274-68100293 MsG0180003777.01.T01:CDS 40.0%
TTCGTGAAGTTGTGAGAGAA+AGG + Chr1:68098642-68098661 MsG0180003777.01.T01:intron 40.0%
! AAGGGTCTTGTATATAGGGA+CGG - Chr1:68100893-68100912 None:intergenic 40.0%
! CAGATTTCAAAAGAGCATGG+TGG + Chr1:68099440-68099459 MsG0180003777.01.T01:intron 40.0%
! CTTTGGCTCCTATATTTGTG+TGG + Chr1:68097092-68097111 MsG0180003777.01.T01:intron 40.0%
! GATGGATTTGAGCAAAGTTG+AGG - Chr1:68096084-68096103 None:intergenic 40.0%
! GGAAAGATTTATGAGTTGGG+TGG + Chr1:68100518-68100537 MsG0180003777.01.T01:CDS 40.0%
! TGGCTTATTTGTTTGTTGGC+AGG + Chr1:68098319-68098338 MsG0180003777.01.T01:intron 40.0%
! TGTGGGACATGATTGATTTC+AGG + Chr1:68101791-68101810 MsG0180003777.01.T01:intron 40.0%
!! ACTACAGCTTTGAAGGATGA+TGG + Chr1:68100485-68100504 MsG0180003777.01.T01:CDS 40.0%
!! ACTTGAGATCCCATTTTAGC+TGG - Chr1:68097920-68097939 None:intergenic 40.0%
!! AGAGACCTTTTCACTGATTG+TGG - Chr1:68102147-68102166 None:intergenic 40.0%
!! AGGCTAGGATTGATTTTCCT+TGG + Chr1:68097452-68097471 MsG0180003777.01.T01:intron 40.0%
!! GGCTAGGATTGATTTTCCTT+GGG + Chr1:68097453-68097472 MsG0180003777.01.T01:intron 40.0%
!! GTTTTGACCTTGCTAGATCT+TGG + Chr1:68096533-68096552 MsG0180003777.01.T01:intron 40.0%
!! TAGGATTGATTTTCCTTGGG+AGG + Chr1:68097456-68097475 MsG0180003777.01.T01:intron 40.0%
!!! ATCCCATTTTAGCTGGAAGA+GGG - Chr1:68097913-68097932 None:intergenic 40.0%
!!! ATGCTTGCAGTTTTAAGGCT+AGG + Chr1:68097437-68097456 MsG0180003777.01.T01:intron 40.0%
AAAAGGTCTCTCCAGATGCT+TGG + Chr1:68102156-68102175 MsG0180003777.01.T01:CDS 45.0%
AACAGCAGGTTTGAAGATCG+TGG - Chr1:68100193-68100212 None:intergenic 45.0%
AATCATGTCCCACACAACGT+TGG - Chr1:68101785-68101804 None:intergenic 45.0%
ACAAAGTTGAACACCTCCCA+AGG - Chr1:68097472-68097491 None:intergenic 45.0%
ACAAGGCATGCACGAATGAA+GGG - Chr1:68100589-68100608 None:intergenic 45.0%
ACAGGGCAAGATATACTTCC+TGG - Chr1:68099994-68100013 None:intergenic 45.0%
ACGTGTCAAACACCTCTCAA+TGG + Chr1:68096628-68096647 MsG0180003777.01.T01:intron 45.0%
AGCAACAATACCACTGCACA+AGG - Chr1:68097739-68097758 None:intergenic 45.0%
AGCATCCTGGAAGAAGATGA+CGG - Chr1:68099506-68099525 None:intergenic 45.0%
AGGAAAGGAGGTCCACAATT+TGG + Chr1:68102119-68102138 MsG0180003777.01.T01:CDS 45.0%
AGGTGTTTGACACGTGTTCA+AGG - Chr1:68096623-68096642 None:intergenic 45.0%
CAAGCCATTACAAGACGCTT+AGG + Chr1:68096041-68096060 MsG0180003777.01.T01:CDS 45.0%
CAAGCCTGAGATGTTCAATC+TGG + Chr1:68101866-68101885 MsG0180003777.01.T01:CDS 45.0%
CAAGTCTTAGTTCCTTTCCG+AGG + Chr1:68097935-68097954 MsG0180003777.01.T01:CDS 45.0%
CAGATTGAACATCTCAGGCT+TGG - Chr1:68101868-68101887 None:intergenic 45.0%
CAGTATCTGCAGCATAAGCA+TGG - Chr1:68101899-68101918 None:intergenic 45.0%
CAGTGCATCAGTGCTTAAAC+AGG - Chr1:68100012-68100031 None:intergenic 45.0%
CATTGTATGCCAACGTTGTG+TGG + Chr1:68101773-68101792 MsG0180003777.01.T01:intron 45.0%
CCTCGTCATCTCAAACTGAT+GGG + Chr1:68097971-68097990 MsG0180003777.01.T01:CDS 45.0%
CGTGAAGTTGTGAGAGAAAG+GGG + Chr1:68098644-68098663 MsG0180003777.01.T01:intron 45.0%
GAAAGCAATTCCTTGTGCAG+TGG + Chr1:68097726-68097745 MsG0180003777.01.T01:intron 45.0%
GAATCTTATGGCCAAGCATC+TGG - Chr1:68102170-68102189 None:intergenic 45.0%
GAGAGTCGCACTGAACAATT+TGG - Chr1:68098781-68098800 None:intergenic 45.0%
GAGGAAAGCAGTCAGTTTAG+AGG + Chr1:68098941-68098960 MsG0180003777.01.T01:intron 45.0%
GAGTAAGTATAGGGTTCGGA+AGG + Chr1:68097655-68097674 MsG0180003777.01.T01:intron 45.0%
GGCTCACTTAACATGCACTA+AGG - Chr1:68099302-68099321 None:intergenic 45.0%
GTGACCTAAGCGTCTTGTAA+TGG - Chr1:68096048-68096067 None:intergenic 45.0%
GTTTCCACCATAGCTACCAA+GGG + Chr1:68096230-68096249 MsG0180003777.01.T01:CDS 45.0%
TCCCCTCTTCCAGCTAAAAT+GGG + Chr1:68097908-68097927 MsG0180003777.01.T01:intron 45.0%
TCCTCGTCATCTCAAACTGA+TGG + Chr1:68097970-68097989 MsG0180003777.01.T01:CDS 45.0%
TGTTTCCACCATAGCTACCA+AGG + Chr1:68096229-68096248 MsG0180003777.01.T01:CDS 45.0%
TTCCCCTCTTCCAGCTAAAA+TGG + Chr1:68097907-68097926 MsG0180003777.01.T01:intron 45.0%
! AAGAGCATGGTGGTATCATG+AGG + Chr1:68099450-68099469 MsG0180003777.01.T01:CDS 45.0%
! AAGGATGATGGCACTAGCAT+GGG + Chr1:68100497-68100516 MsG0180003777.01.T01:CDS 45.0%
! ACTGATGGGAGATTTAGGAC+AGG + Chr1:68097985-68098004 MsG0180003777.01.T01:CDS 45.0%
! AGAGGCACGTTTACATATCG+AGG - Chr1:68101245-68101264 None:intergenic 45.0%
! AGGACCGGATTTTAAACCGA+TGG + Chr1:68100226-68100245 MsG0180003777.01.T01:CDS 45.0%
! CGCACTTACTACAGCTTTGA+AGG + Chr1:68100478-68100497 MsG0180003777.01.T01:CDS 45.0%
! GGACCGGATTTTAAACCGAT+GGG + Chr1:68100227-68100246 MsG0180003777.01.T01:CDS 45.0%
! TGAGGAAGTGCACTATCACA+TGG + Chr1:68098372-68098391 MsG0180003777.01.T01:CDS 45.0%
!! CGAAGCCGTTTTCAGAAATC+AGG - Chr1:68102355-68102374 None:intergenic 45.0%
!! GAGCCCATCGGTTTAAAATC+CGG - Chr1:68100233-68100252 None:intergenic 45.0%
!! TCTTTTAGCTGTGCATGGGA+GGG + Chr1:68101702-68101721 MsG0180003777.01.T01:intron 45.0%
!! TTCTTTTAGCTGTGCATGGG+AGG + Chr1:68101701-68101720 MsG0180003777.01.T01:intron 45.0%
!!! GATCCCATTTTAGCTGGAAG+AGG - Chr1:68097914-68097933 None:intergenic 45.0%
!!! GGCATATTTTTGGTCTGCTG+GGG + Chr1:68101345-68101364 MsG0180003777.01.T01:intron 45.0%
!!! GGGCATATTTTTGGTCTGCT+GGG + Chr1:68101344-68101363 MsG0180003777.01.T01:intron 45.0%
!!! TCCCATTTTAGCTGGAAGAG+GGG - Chr1:68097912-68097931 None:intergenic 45.0%
!!! TGGGCATATTTTTGGTCTGC+TGG + Chr1:68101343-68101362 MsG0180003777.01.T01:intron 45.0%
!! ATTATAATAAAATTGAAAAA+TGG - Chr1:68096320-68096339 None:intergenic 5.0%
!! GTTAATTAATTAATTAAAAA+TGG - Chr1:68096169-68096188 None:intergenic 5.0%
AACATCTCAGGCTTGGGTAG+TGG - Chr1:68101861-68101880 None:intergenic 50.0%
ATCTTCCACCAGTACCCTTG+CGG - Chr1:68096271-68096290 None:intergenic 50.0%
CATCTCCGTCATCTTCTTCC+AGG + Chr1:68099498-68099517 MsG0180003777.01.T01:CDS 50.0%
CATGGCCGAGAAACTTGCAA+AGG + Chr1:68098390-68098409 MsG0180003777.01.T01:CDS 50.0%
CCTACCTTTGCAATGGGAAG+AGG - Chr1:68101263-68101282 None:intergenic 50.0%
CCTCTTCCCATTGCAAAGGT+AGG + Chr1:68101260-68101279 MsG0180003777.01.T01:intron 50.0%
CTGGTGGAAGATCATCTGTC+AGG + Chr1:68096279-68096298 MsG0180003777.01.T01:CDS 50.0%
GAATCTTCAGAGCCTCGGAA+AGG - Chr1:68097950-68097969 None:intergenic 50.0%
GACAAGGCATGCACGAATGA+AGG - Chr1:68100590-68100609 None:intergenic 50.0%
GAGGAGAATCTTCAGAGCCT+CGG - Chr1:68097955-68097974 None:intergenic 50.0%
GCACAAACACCGACACTTCT+CGG + Chr1:68096592-68096611 MsG0180003777.01.T01:intron 50.0%
GGGTATCCCTTCAGCTTATG+AGG - Chr1:68102077-68102096 None:intergenic 50.0%
GTAGGCTTCATTGCCAGCTA+TGG - Chr1:68097040-68097059 None:intergenic 50.0%
TAAAGCAGCTGCCGAAGAAG+CGG + Chr1:68099532-68099551 MsG0180003777.01.T01:CDS 50.0%
TCATTGCCAGCTATGGAGCA+CGG - Chr1:68097033-68097052 None:intergenic 50.0%
! AAGGTGTGTCCGAGAAGTGT+CGG - Chr1:68096604-68096623 None:intergenic 50.0%
! CCCATCAGTTTGAGATGACG+AGG - Chr1:68097974-68097993 None:intergenic 50.0%
! GAAGGATGATGGCACTAGCA+TGG + Chr1:68100496-68100515 MsG0180003777.01.T01:CDS 50.0%
! GCTACAGTATTTGGAGCGAC+TGG + Chr1:68097756-68097775 MsG0180003777.01.T01:CDS 50.0%
! TTTGGAGCGACTGGATTCCT+TGG + Chr1:68097765-68097784 MsG0180003777.01.T01:CDS 50.0%
!! CTTTTAGCTGTGCATGGGAG+GGG + Chr1:68101703-68101722 MsG0180003777.01.T01:intron 50.0%
!! TCAGGCATTGGCAACACCAA+GGG + Chr1:68101809-68101828 MsG0180003777.01.T01:intron 50.0%
!! TCAGGCTTGGGTAGTGGAAA+GGG - Chr1:68101855-68101874 None:intergenic 50.0%
!! TTCAGGCATTGGCAACACCA+AGG + Chr1:68101808-68101827 MsG0180003777.01.T01:intron 50.0%
ACATGCACTAAGGGCCCGTT+TGG - Chr1:68099292-68099311 None:intergenic 55.0%
CGTGCCTCTTCCCATTGCAA+AGG + Chr1:68101256-68101275 MsG0180003777.01.T01:CDS 55.0%
GTGTTCCCGTTCCCCATCAA+TGG - Chr1:68100282-68100301 None:intergenic 55.0%
TAGAGTCCGTGCTCCATAGC+TGG + Chr1:68097024-68097043 MsG0180003777.01.T01:intron 55.0%
! AACGCCCTTGGTAGCTATGG+TGG - Chr1:68096237-68096256 None:intergenic 55.0%
! ACCAACGCCCTTGGTAGCTA+TGG - Chr1:68096240-68096259 None:intergenic 55.0%
! ACCATAGCTACCAAGGGCGT+TGG + Chr1:68096236-68096255 MsG0180003777.01.T01:CDS 55.0%
!! CTCAGGCTTGGGTAGTGGAA+AGG - Chr1:68101856-68101875 None:intergenic 55.0%
GTTGGTCACCTCGTCCGCAA+GGG + Chr1:68096254-68096273 MsG0180003777.01.T01:CDS 60.0%
CACCAGTACCCTTGCGGACG+AGG - Chr1:68096265-68096284 None:intergenic 65.0%
CGTTGGTCACCTCGTCCGCA+AGG + Chr1:68096253-68096272 MsG0180003777.01.T01:CDS 65.0%
GACGAGGTGACCAACGCCCT+TGG - Chr1:68096249-68096268 None:intergenic 65.0%
! CACCTCGTCCGCAAGGGTAC+TGG + Chr1:68096260-68096279 MsG0180003777.01.T01:CDS 65.0%
!! CTCGTCCGCAAGGGTACTGG+TGG + Chr1:68096263-68096282 MsG0180003777.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 68095944 68102444 68095944 ID=MsG0180003777.01;Name=MsG0180003777.01
Chr1 mRNA 68095944 68102444 68095944 ID=MsG0180003777.01.T01;Parent=MsG0180003777.01;Name=MsG0180003777.01.T01;_AED=0.45;_eAED=0.46;_QI=94|0.90|0.91|1|1|1|12|260|402
Chr1 exon 68095944 68096122 68095944 ID=MsG0180003777.01.T01:exon:51777;Parent=MsG0180003777.01.T01
Chr1 exon 68096204 68096300 68096204 ID=MsG0180003777.01.T01:exon:51778;Parent=MsG0180003777.01.T01
Chr1 exon 68097746 68097810 68097746 ID=MsG0180003777.01.T01:exon:51779;Parent=MsG0180003777.01.T01
Chr1 exon 68097921 68098006 68097921 ID=MsG0180003777.01.T01:exon:51780;Parent=MsG0180003777.01.T01
Chr1 exon 68098155 68098239 68098155 ID=MsG0180003777.01.T01:exon:51781;Parent=MsG0180003777.01.T01
Chr1 exon 68098341 68098429 68098341 ID=MsG0180003777.01.T01:exon:51782;Parent=MsG0180003777.01.T01
Chr1 exon 68099443 68099574 68099443 ID=MsG0180003777.01.T01:exon:51783;Parent=MsG0180003777.01.T01
Chr1 exon 68100189 68100304 68100189 ID=MsG0180003777.01.T01:exon:51784;Parent=MsG0180003777.01.T01
Chr1 exon 68100445 68100568 68100445 ID=MsG0180003777.01.T01:exon:51785;Parent=MsG0180003777.01.T01
Chr1 exon 68101209 68101277 68101209 ID=MsG0180003777.01.T01:exon:51786;Parent=MsG0180003777.01.T01
Chr1 exon 68101813 68101933 68101813 ID=MsG0180003777.01.T01:exon:51787;Parent=MsG0180003777.01.T01
Chr1 exon 68102045 68102444 68102045 ID=MsG0180003777.01.T01:exon:51788;Parent=MsG0180003777.01.T01
Chr1 five_prime_UTR 68095944 68096037 68095944 ID=MsG0180003777.01.T01:five_prime_utr;Parent=MsG0180003777.01.T01
Chr1 CDS 68096038 68096122 68096038 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68096204 68096300 68096204 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68097746 68097810 68097746 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68097921 68098006 68097921 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68098155 68098239 68098155 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68098341 68098429 68098341 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68099443 68099574 68099443 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68100189 68100304 68100189 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68100445 68100568 68100445 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68101209 68101277 68101209 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68101813 68101933 68101813 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 CDS 68102045 68102184 68102045 ID=MsG0180003777.01.T01:cds;Parent=MsG0180003777.01.T01
Chr1 three_prime_UTR 68102185 68102444 68102185 ID=MsG0180003777.01.T01:three_prime_utr;Parent=MsG0180003777.01.T01
Gene Sequence

>MsG0180003777.01.T01

ATGCAAGCCATTACAAGACGCTTAGGTCACGATTCTCTGAAATCCTCAACTTTGCTCAAATCCATCTATCCAATTTCCGATCACTATTATGGTGTAAATCACGAGCGTTATGTTTCCACCATAGCTACCAAGGGCGTTGGTCACCTCGTCCGCAAGGGTACTGGTGGAAGATCATCTGTCAGTGGTATTGTTGCTACAGTATTTGGAGCGACTGGATTCCTTGGTCGTTATGTTGTTCAACAACTTGCTAAAATGGGATCTCAAGTCTTAGTTCCTTTCCGAGGCTCTGAAGATTCTCCTCGTCATCTCAAACTGATGGGAGATTTAGGACAGATTGTACCCATGAAATTCAATCCAAGAGATGAGAGTTCGGTTAAAGCTGTAATGGCTAGAGCCAATGTTGTCATCAATCTTATTGGAAGGGATTATGAGACAAGAAACTACAGCTATGAGGAAGTGCACTATCACATGGCCGAGAAACTTGCAAAGGCATGTTCTTTCACATTTATTTCAAAAGAGCATGGTGGTATCATGAGGTTCATTCAAGTTTCTTGCTTAGGTGCATCTCCGTCATCTTCTTCCAGGATGCTTAGATGTAAAGCAGCTGCCGAAGAAGCGGTTTTAAGAGAATTACCTGAGGCCACGATCTTCAAACCTGCTGTTATGATTGGTACAGAGGACCGGATTTTAAACCGATGGGCTCATTTTGCAAAGAAGTATGGCTTTATTCCATTGATGGGGAACGGGAACACAAAAATCCAACCTGTATATGTTGTTGATGTCGCTGCCGCACTTACTACAGCTTTGAAGGATGATGGCACTAGCATGGGAAAGATTTATGAGTTGGGTGGTCCTGAGATCTTTACTGTGCATCAGTTGGCAGAGATTATGTATGATGTGATTCGTGAATGGCCTCGATATGTAAACGTGCCTCTTCCCATTGCAAAGGCATTGGCAACACCAAGGGAATTATTCTTAAACAAGCTTCCCTTTCCACTACCCAAGCCTGAGATGTTCAATCTGGATCAGATCCATGCTTATGCTGCAGATACTGTTGTTTCAGAAAATGCTTTGACATTCAATGATCTTGGAATTGTTCCTCATAAGCTGAAGGGATACCCTATTGAGTTTCTTATTCAATACAGGAAAGGAGGTCCACAATTTGGTTCCACAATCAGTGAAAAGGTCTCTCCAGATGCTTGGCCATAA
Protein sequence

>MsG0180003777.01.T01

MQAITRRLGHDSLKSSTLLKSIYPISDHYYGVNHERYVSTIATKGVGHLVRKGTGGRSSVSGIVATVFGATGFLGRYVVQQLAKMGSQVLVPFRGSEDSPRHLKLMGDLGQIVPMKFNPRDESSVKAVMARANVVINLIGRDYETRNYSYEEVHYHMAEKLAKACSFTFISKEHGGIMRFIQVSCLGASPSSSSRMLRCKAAAEEAVLRELPEATIFKPAVMIGTEDRILNRWAHFAKKYGFIPLMGNGNTKIQPVYVVDVAAALTTALKDDGTSMGKIYELGGPEIFTVHQLAEIMYDVIREWPRYVNVPLPIAKALATPRELFLNKLPFPLPKPEMFNLDQIHAYAADTVVSENALTFNDLGIVPHKLKGYPIEFLIQYRKGGPQFGSTISEKVSPDAWP*