Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026446.01.T01 | XP_003614051.1 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0 | 528 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026446.01.T01 | Q9C5W6 | 84.231 | 260 | 36 | 1 | 2 | 256 | 5 | 264 | 2.98E-161 | 451 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026446.01.T01 | G7JWT4 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0.0 | 528 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048738.01 | MsG0580026446.01 | 0.816079 | 6.651956e-52 | 4.667660e-49 |
MsG0080048922.01 | MsG0580026446.01 | 0.809547 | 1.792517e-50 | 1.055518e-47 |
MsG0080049008.01 | MsG0580026446.01 | 0.803707 | 3.065238e-49 | 1.550983e-46 |
MsG0180000466.01 | MsG0580026446.01 | 0.814652 | 1.381456e-51 | 9.323167e-49 |
MsG0180001169.01 | MsG0580026446.01 | 0.834370 | 3.117237e-56 | 3.691874e-53 |
MsG0180002404.01 | MsG0580026446.01 | 0.811265 | 7.632786e-51 | 4.703168e-48 |
MsG0180003421.01 | MsG0580026446.01 | 0.802379 | 5.770356e-49 | 2.822501e-46 |
MsG0180003777.01 | MsG0580026446.01 | 0.802177 | 6.348765e-49 | 3.089250e-46 |
MsG0180003905.01 | MsG0580026446.01 | 0.866496 | 2.733067e-65 | 9.230396e-62 |
MsG0180004064.01 | MsG0580026446.01 | 0.831713 | 1.428448e-55 | 1.562998e-52 |
MsG0180004366.01 | MsG0580026446.01 | 0.835663 | 1.472281e-56 | 1.812487e-53 |
MsG0180004652.01 | MsG0580026446.01 | 0.827313 | 1.675887e-54 | 1.612133e-51 |
MsG0180004828.01 | MsG0580026446.01 | 0.859520 | 3.907476e-63 | 1.034806e-59 |
MsG0180005769.01 | MsG0580026446.01 | 0.800691 | 1.279693e-48 | 5.996904e-46 |
MsG0180005780.01 | MsG0580026446.01 | 0.800052 | 1.726936e-48 | 7.962583e-46 |
MsG0180005819.01 | MsG0580026446.01 | 0.811325 | 7.409525e-51 | 4.572546e-48 |
MsG0380012655.01 | MsG0580026446.01 | 0.808561 | 2.914992e-50 | 1.672067e-47 |
MsG0380012818.01 | MsG0580026446.01 | 0.817578 | 3.066984e-52 | 2.242046e-49 |
MsG0380014807.01 | MsG0580026446.01 | 0.809148 | 2.183231e-50 | 1.271999e-47 |
MsG0480018486.01 | MsG0580026446.01 | 0.802089 | 6.620838e-49 | 3.214485e-46 |
MsG0480018767.01 | MsG0580026446.01 | 0.806142 | 9.496704e-50 | 5.115797e-47 |
MsG0480020398.01 | MsG0580026446.01 | 0.815531 | 8.812545e-52 | 6.091471e-49 |
MsG0480022302.01 | MsG0580026446.01 | 0.818820 | 1.605909e-52 | 1.214782e-49 |
MsG0480022923.01 | MsG0580026446.01 | 0.834942 | 2.238674e-56 | 2.697207e-53 |
MsG0480023414.01 | MsG0580026446.01 | 0.840480 | 8.479538e-58 | 1.209356e-54 |
MsG0480023602.01 | MsG0580026446.01 | 0.836985 | 6.788635e-57 | 8.697103e-54 |
MsG0480023706.01 | MsG0580026446.01 | 0.834675 | 2.613856e-56 | 3.123703e-53 |
MsG0480023774.01 | MsG0580026446.01 | 0.807263 | 5.505963e-50 | 3.052855e-47 |
MsG0480023996.01 | MsG0580026446.01 | 0.807544 | 4.800338e-50 | 2.681022e-47 |
MsG0380015371.01 | MsG0580026446.01 | 0.807702 | 4.441962e-50 | 2.491110e-47 |
MsG0380015402.01 | MsG0580026446.01 | 0.851079 | 1.121217e-60 | 2.242881e-57 |
MsG0380015656.01 | MsG0580026446.01 | 0.813073 | 3.078817e-51 | 1.990598e-48 |
MsG0380017079.01 | MsG0580026446.01 | 0.830865 | 2.308446e-55 | 2.462923e-52 |
MsG0380017119.01 | MsG0580026446.01 | 0.809527 | 1.810468e-50 | 1.065502e-47 |
MsG0380017128.01 | MsG0580026446.01 | 0.811292 | 7.531622e-51 | 4.643949e-48 |
MsG0380017156.01 | MsG0580026446.01 | 0.814698 | 1.349273e-51 | 9.117258e-49 |
MsG0380017588.01 | MsG0580026446.01 | 0.877436 | 6.291708e-69 | 3.163642e-65 |
MsG0380017826.01 | MsG0580026446.01 | 0.824336 | 8.529130e-54 | 7.532364e-51 |
MsG0580026343.01 | MsG0580026446.01 | 0.840538 | 8.188675e-58 | 1.169998e-54 |
MsG0580026446.01 | MsG0580027854.01 | 0.842953 | 1.887083e-58 | 2.907374e-55 |
MsG0580026446.01 | MsG0580028364.01 | 0.827149 | 1.834478e-54 | 1.756116e-51 |
MsG0580026446.01 | MsG0580030141.01 | 0.820419 | 6.927956e-53 | 5.479147e-50 |
MsG0580026446.01 | MsG0680031006.01 | 0.845809 | 3.221790e-59 | 5.434392e-56 |
MsG0580026446.01 | MsG0680035905.01 | 0.810581 | 1.073740e-50 | 6.496975e-48 |
MsG0580026446.01 | MsG0780036859.01 | 0.841223 | 5.413594e-58 | 7.900670e-55 |
MsG0580026446.01 | MsG0780038393.01 | 0.803803 | 2.928135e-49 | 1.485315e-46 |
MsG0580026446.01 | MsG0780038647.01 | 0.809251 | 2.074930e-50 | 1.212239e-47 |
MsG0580026446.01 | MsG0780040830.01 | 0.814261 | 1.686195e-51 | 1.126003e-48 |
MsG0580026446.01 | MsG0780040978.01 | 0.899687 | 1.548929e-77 | 1.935883e-73 |
MsG0580026446.01 | MsG0780040990.01 | 0.882452 | 1.029735e-70 | 6.275870e-67 |
MsG0580026446.01 | MsG0780041219.01 | 0.824192 | 9.219173e-54 | 8.108918e-51 |
MsG0580026446.01 | MsG0780041232.01 | 0.806334 | 8.653294e-50 | 4.684279e-47 |
MsG0580026446.01 | MsG0780041240.01 | 0.816797 | 4.595206e-52 | 3.288102e-49 |
MsG0580026446.01 | MsG0780041354.01 | 0.813166 | 2.937224e-51 | 1.903819e-48 |
MsG0580026446.01 | MsG0780041560.01 | 0.833723 | 4.527823e-56 | 5.258729e-53 |
MsG0580026446.01 | MsG0880042657.01 | 0.823109 | 1.652921e-53 | 1.410145e-50 |
MsG0580026446.01 | MsG0880042833.01 | 0.802313 | 5.951821e-49 | 2.906456e-46 |
MsG0580026446.01 | MsG0880043495.01 | 0.837113 | 6.294416e-57 | 8.095144e-54 |
MsG0580026446.01 | MsG0880043669.01 | 0.811472 | 6.883254e-51 | 4.264677e-48 |
MsG0580026446.01 | MsG0880044342.01 | 0.815780 | 7.755461e-52 | 5.397860e-49 |
MsG0580026446.01 | MsG0880045356.01 | 0.867823 | 1.030034e-65 | 3.645157e-62 |
MsG0580026446.01 | MsG0880045647.01 | 0.802328 | 5.909886e-49 | 2.887021e-46 |
MsG0580026446.01 | MsG0880045761.01 | -0.828841 | 7.182627e-55 | 7.222804e-52 |
MsG0580026446.01 | MsG0880045836.01 | 0.810699 | 1.012165e-50 | 6.144047e-48 |
MsG0580026446.01 | MsG0880046906.01 | 0.802385 | 5.752287e-49 | 2.814144e-46 |
MsG0580026446.01 | MsG0880047146.01 | 0.839937 | 1.175190e-57 | 1.648148e-54 |
MsG0580026446.01 | MsG0880047414.01 | 0.800410 | 1.460204e-48 | 6.794456e-46 |
MsG0280006717.01 | MsG0580026446.01 | 0.814614 | 1.408323e-51 | 9.494818e-49 |
MsG0280006747.01 | MsG0580026446.01 | 0.802439 | 5.607258e-49 | 2.746812e-46 |
MsG0280007667.01 | MsG0580026446.01 | 0.810223 | 1.282880e-50 | 7.688873e-48 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0580026446.01 | MsG0480023088.01 | PPI |
MsG0580026446.01 | MsG0580027884.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026446.01.T01 | MTR_5g044160 | 99.612 | 258 | 1 | 0 | 1 | 258 | 1 | 258 | 0.0 | 528 |
MsG0580026446.01.T01 | MTR_4g083060 | 89.147 | 258 | 27 | 1 | 1 | 258 | 1 | 257 | 4.91e-173 | 479 |
MsG0580026446.01.T01 | MTR_2g091225 | 75.502 | 249 | 60 | 1 | 1 | 249 | 1 | 248 | 6.94e-142 | 400 |
MsG0580026446.01.T01 | MTR_8g086270 | 76.735 | 245 | 57 | 0 | 1 | 245 | 1 | 245 | 9.67e-141 | 397 |
MsG0580026446.01.T01 | MTR_2g076960 | 74.897 | 243 | 61 | 0 | 7 | 249 | 8 | 250 | 8.58e-138 | 389 |
MsG0580026446.01.T01 | MTR_2g015980 | 74.897 | 243 | 59 | 2 | 11 | 253 | 9 | 249 | 1.18e-134 | 381 |
MsG0580026446.01.T01 | MTR_2g091225 | 76.000 | 225 | 53 | 1 | 25 | 249 | 2 | 225 | 4.38e-129 | 366 |
MsG0580026446.01.T01 | MTR_3g099380 | 70.817 | 257 | 72 | 3 | 2 | 256 | 3 | 258 | 4.99e-127 | 362 |
MsG0580026446.01.T01 | MTR_5g064580 | 68.627 | 255 | 75 | 2 | 2 | 254 | 3 | 254 | 1.85e-123 | 353 |
MsG0580026446.01.T01 | MTR_3g100620 | 66.245 | 237 | 77 | 1 | 7 | 240 | 11 | 247 | 1.04e-112 | 325 |
MsG0580026446.01.T01 | MTR_3g099380 | 68.657 | 201 | 61 | 2 | 2 | 200 | 3 | 203 | 9.17e-95 | 278 |
MsG0580026446.01.T01 | MTR_0137s0020 | 52.542 | 236 | 102 | 5 | 7 | 237 | 11 | 241 | 1.83e-73 | 226 |
MsG0580026446.01.T01 | MTR_3g014060 | 52.119 | 236 | 103 | 5 | 7 | 237 | 11 | 241 | 1.22e-72 | 223 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580026446.01.T01 | AT1G26480 | 84.231 | 260 | 36 | 1 | 2 | 256 | 5 | 264 | 3.04e-162 | 451 |
MsG0580026446.01.T01 | AT1G34760 | 79.835 | 243 | 48 | 1 | 4 | 246 | 2 | 243 | 5.33e-143 | 402 |
MsG0580026446.01.T01 | AT1G34760 | 79.835 | 243 | 48 | 1 | 4 | 246 | 2 | 243 | 5.97e-143 | 402 |
MsG0580026446.01.T01 | AT2G42590 | 72.659 | 267 | 68 | 2 | 1 | 262 | 1 | 267 | 4.82e-141 | 398 |
MsG0580026446.01.T01 | AT2G42590 | 74.219 | 256 | 65 | 1 | 1 | 255 | 1 | 256 | 3.27e-140 | 395 |
MsG0580026446.01.T01 | AT2G42590 | 73.725 | 255 | 67 | 0 | 1 | 255 | 1 | 255 | 6.55e-139 | 392 |
MsG0580026446.01.T01 | AT1G22300 | 74.400 | 250 | 64 | 0 | 4 | 253 | 2 | 251 | 1.18e-134 | 381 |
MsG0580026446.01.T01 | AT1G22300 | 74.400 | 250 | 64 | 0 | 4 | 253 | 2 | 251 | 1.32e-134 | 381 |
MsG0580026446.01.T01 | AT1G22300 | 76.250 | 240 | 57 | 0 | 4 | 243 | 2 | 241 | 2.87e-133 | 377 |
MsG0580026446.01.T01 | AT1G35160 | 72.222 | 252 | 68 | 1 | 7 | 256 | 11 | 262 | 6.32e-127 | 362 |
MsG0580026446.01.T01 | AT3G02520 | 71.705 | 258 | 65 | 3 | 7 | 256 | 5 | 262 | 1.49e-126 | 361 |
MsG0580026446.01.T01 | AT3G02520 | 71.705 | 258 | 65 | 3 | 7 | 256 | 5 | 262 | 1.49e-126 | 361 |
MsG0580026446.01.T01 | AT5G38480 | 71.429 | 252 | 70 | 2 | 7 | 256 | 4 | 255 | 1.56e-126 | 361 |
MsG0580026446.01.T01 | AT1G78300 | 70.635 | 252 | 72 | 2 | 7 | 256 | 5 | 256 | 4.94e-125 | 357 |
MsG0580026446.01.T01 | AT5G38480 | 72.800 | 250 | 63 | 4 | 7 | 254 | 4 | 250 | 1.02e-124 | 356 |
MsG0580026446.01.T01 | AT5G38480 | 72.800 | 250 | 63 | 4 | 7 | 254 | 4 | 250 | 1.02e-124 | 356 |
MsG0580026446.01.T01 | AT4G09000 | 70.732 | 246 | 70 | 1 | 2 | 245 | 5 | 250 | 2.82e-123 | 353 |
MsG0580026446.01.T01 | AT1G35160 | 74.786 | 234 | 57 | 1 | 7 | 238 | 11 | 244 | 7.11e-123 | 353 |
MsG0580026446.01.T01 | AT4G09000 | 72.385 | 239 | 64 | 1 | 2 | 238 | 5 | 243 | 3.97e-121 | 349 |
MsG0580026446.01.T01 | AT5G16050 | 66.288 | 264 | 79 | 2 | 1 | 254 | 1 | 264 | 1.51e-119 | 343 |
MsG0580026446.01.T01 | AT5G16050 | 66.288 | 264 | 79 | 2 | 1 | 254 | 1 | 264 | 1.51e-119 | 343 |
MsG0580026446.01.T01 | AT5G65430 | 66.397 | 247 | 80 | 1 | 1 | 244 | 1 | 247 | 8.36e-115 | 331 |
MsG0580026446.01.T01 | AT5G65430 | 66.803 | 244 | 78 | 1 | 1 | 241 | 1 | 244 | 1.16e-114 | 330 |
MsG0580026446.01.T01 | AT5G65430 | 67.220 | 241 | 76 | 1 | 1 | 238 | 1 | 241 | 1.62e-113 | 328 |
MsG0580026446.01.T01 | AT5G10450 | 64.754 | 244 | 83 | 1 | 1 | 241 | 1 | 244 | 1.06e-112 | 325 |
MsG0580026446.01.T01 | AT5G10450 | 65.021 | 243 | 82 | 1 | 1 | 240 | 1 | 243 | 1.11e-112 | 325 |
MsG0580026446.01.T01 | AT5G10450 | 65.145 | 241 | 81 | 1 | 1 | 238 | 1 | 241 | 5.63e-112 | 324 |
MsG0580026446.01.T01 | AT5G10450 | 65.145 | 241 | 81 | 1 | 1 | 238 | 1 | 241 | 1.72e-111 | 323 |
MsG0580026446.01.T01 | AT1G78220 | 51.709 | 234 | 112 | 1 | 4 | 236 | 2 | 235 | 4.60e-82 | 248 |
MsG0580026446.01.T01 | AT1G22290 | 49.537 | 216 | 85 | 5 | 4 | 214 | 2 | 198 | 1.22e-59 | 189 |
MsG0580026446.01.T01 | AT1G22290 | 49.296 | 213 | 84 | 5 | 4 | 211 | 2 | 195 | 6.85e-59 | 187 |
MsG0580026446.01.T01 | AT2G10450 | 48.387 | 62 | 32 | 0 | 204 | 265 | 16 | 77 | 1.22e-12 | 62.8 |
Find 68 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAATCGATTGCTTACCTTTC+AGG | 0.105745 | 5:-37580554 | None:intergenic |
CAGAATATCACCACAGATTT+TGG | 0.109197 | 5:-37579483 | None:intergenic |
TGAGCAGAAGGAGGAGTCTA+AGG | 0.249783 | 5:+37579400 | MsG0580026446.01.T01:CDS |
TTACTATAGATCTATAACTA+TGG | 0.277558 | 5:-37581406 | None:intergenic |
GCAGGAAAGGGGATTATTTC+CGG | 0.289859 | 5:+37580259 | MsG0580026446.01.T01:intron |
CGCCTCATCAAAAGCTTGTT+TGG | 0.319773 | 5:-37580662 | None:intergenic |
AGGCAAAGAAGAAGAAGAAA+TGG | 0.328933 | 5:-37578321 | None:intergenic |
TACCTCAGGCTCAGCGGGTT+TGG | 0.338393 | 5:-37581319 | None:intergenic |
AGAGTTCCTCCTCAACCTTT+TGG | 0.345006 | 5:-37579460 | None:intergenic |
CAAAAGCTTGTTTGGCCAAA+TGG | 0.349323 | 5:-37580654 | None:intergenic |
AACTTACAGGGCCTGCCATT+TGG | 0.370260 | 5:+37580639 | MsG0580026446.01.T01:intron |
TTCATATCTTTCAGCTTGTT+CGG | 0.370539 | 5:-37578446 | None:intergenic |
GAGAGAGACCCAAGTTTACT+TGG | 0.378465 | 5:+37578414 | MsG0580026446.01.T01:CDS |
GACAATTATTGACCAGCATC+TGG | 0.387445 | 5:+37579505 | MsG0580026446.01.T01:CDS |
AATCAGAGGTCCAGAGAGTC+AGG | 0.404705 | 5:-37580759 | None:intergenic |
GGTATGTATAAGATTGGTTT+CGG | 0.413833 | 5:+37581338 | MsG0580026446.01.T01:CDS |
AAAGCTTGGCCAAGTAAACT+TGG | 0.423724 | 5:-37578423 | None:intergenic |
TTCAGCTTGTTCGGAAAGCT+TGG | 0.436972 | 5:-37578437 | None:intergenic |
TGAGAGACAACCTGACTCTC+TGG | 0.448857 | 5:+37580749 | MsG0580026446.01.T01:CDS |
GCCTGAGGTATGTATAAGAT+TGG | 0.450416 | 5:+37581332 | MsG0580026446.01.T01:CDS |
AGCTTGTTTGGCCAAATGGC+AGG | 0.464126 | 5:-37580650 | None:intergenic |
TGATGAGGCGATTGCAGAGT+TGG | 0.469932 | 5:+37580675 | MsG0580026446.01.T01:CDS |
GGCAAAGAAGAAGAAGAAAT+GGG | 0.475683 | 5:-37578320 | None:intergenic |
AGACGGATTGGATGTGTTGA+TGG | 0.480349 | 5:-37580482 | None:intergenic |
GCTTCTGCCGAGGTGGAAGC+AGG | 0.494681 | 5:-37579530 | None:intergenic |
ATACATACCTCAGGCTCAGC+GGG | 0.501637 | 5:-37581324 | None:intergenic |
ACCTCTGATTTGCCAGAGGA+TGG | 0.501755 | 5:+37580772 | MsG0580026446.01.T01:CDS |
GATCAAGAGTTACTGCCAAA+AGG | 0.518570 | 5:+37579445 | MsG0580026446.01.T01:CDS |
GAACAAGCTGAAAGATATGA+AGG | 0.522838 | 5:+37578448 | MsG0580026446.01.T01:CDS |
TCTTGAACTCAGCAAGATAC+CGG | 0.525675 | 5:-37580278 | None:intergenic |
TTGGTGCACGAAGAGCTTCA+TGG | 0.527662 | 5:+37579360 | MsG0580026446.01.T01:CDS |
CTCCTCCTTCTGCTCAATTG+AGG | 0.527914 | 5:-37579393 | None:intergenic |
GAGTTACTGCCAAAAGGTTG+AGG | 0.532495 | 5:+37579451 | MsG0580026446.01.T01:CDS |
TATCCCTTACCTCCATCCTC+TGG | 0.533069 | 5:-37580784 | None:intergenic |
TGGAAGCAGGAACCAGATGC+TGG | 0.540094 | 5:-37579517 | None:intergenic |
TCAACACATCCAATCCGTCT+TGG | 0.541520 | 5:+37580485 | MsG0580026446.01.T01:CDS |
GAGAGGAACCTCCTCTCAGT+TGG | 0.543164 | 5:+37579323 | MsG0580026446.01.T01:CDS |
AGTGCAAGTCCAAGACGGAT+TGG | 0.548630 | 5:-37580494 | None:intergenic |
AAGATCAGTGTTTGCAGTGG+CGG | 0.557206 | 5:-37580459 | None:intergenic |
GACTGACCAAGAGAGAAAAG+AGG | 0.559564 | 5:+37580299 | MsG0580026446.01.T01:CDS |
ACCAATCTTATACATACCTC+AGG | 0.562725 | 5:-37581333 | None:intergenic |
AAGAAGAAGAAGAAATGGGA+TGG | 0.564884 | 5:-37578316 | None:intergenic |
TATGTCCTCAATTGAGCAGA+AGG | 0.567548 | 5:+37579388 | MsG0580026446.01.T01:CDS |
AGAAGAAGAAGAAATGGGAT+GGG | 0.571812 | 5:-37578315 | None:intergenic |
AACATTAGCTTCTGCCGAGG+TGG | 0.575120 | 5:-37579537 | None:intergenic |
AGCCAAACCCGCTGAGCCTG+AGG | 0.586083 | 5:+37581317 | MsG0580026446.01.T01:CDS |
CTTGAGTGAAGAGTCGTACA+AGG | 0.586539 | 5:+37580702 | MsG0580026446.01.T01:CDS |
TTGAACTAACTGTGGAAGAG+AGG | 0.589747 | 5:+37579306 | MsG0580026446.01.T01:CDS |
GAGCAGAAGGAGGAGTCTAA+GGG | 0.589752 | 5:+37579401 | MsG0580026446.01.T01:CDS |
CTGGACCTCTGATTTGCCAG+AGG | 0.595427 | 5:+37580768 | MsG0580026446.01.T01:CDS |
GGTTGAATGTATGAAGAAAG+TGG | 0.595766 | 5:+37579271 | MsG0580026446.01.T01:CDS |
GCTGCTGAGCAGTCACTGAA+AGG | 0.600437 | 5:+37580321 | MsG0580026446.01.T01:CDS |
AGATTATGAACTCTCCTGAA+AGG | 0.605075 | 5:+37580540 | MsG0580026446.01.T01:CDS |
CTTGTACGACTCTTCACTCA+AGG | 0.608037 | 5:-37580701 | None:intergenic |
AAGCTTGGCCAAGTAAACTT+GGG | 0.611139 | 5:-37578422 | None:intergenic |
TCCATCCTCTGGCAAATCAG+AGG | 0.621846 | 5:-37580773 | None:intergenic |
GAGGAACTCTCCAAAATCTG+TGG | 0.639940 | 5:+37579473 | MsG0580026446.01.T01:CDS |
TCTGATTTGCCAGAGGATGG+AGG | 0.645454 | 5:+37580775 | MsG0580026446.01.T01:CDS |
ACTTGATGTTGAACTAACTG+TGG | 0.647498 | 5:+37579298 | MsG0580026446.01.T01:CDS |
TTACTGCCAAAAGGTTGAGG+AGG | 0.652188 | 5:+37579454 | MsG0580026446.01.T01:CDS |
AGTTGAGTGCAAGTCCAAGA+CGG | 0.652366 | 5:-37580499 | None:intergenic |
GTCCTCAATTGAGCAGAAGG+AGG | 0.654997 | 5:+37579391 | MsG0580026446.01.T01:CDS |
GGTCTCTCTCTCTTTCTCAG+CGG | 0.674609 | 5:-37578401 | None:intergenic |
GAAAACATTAGCTTCTGCCG+AGG | 0.676043 | 5:-37579540 | None:intergenic |
TCTGGTTCCTGCTTCCACCT+CGG | 0.676873 | 5:+37579523 | MsG0580026446.01.T01:CDS |
TATACATACCTCAGGCTCAG+CGG | 0.690490 | 5:-37581325 | None:intergenic |
TGGAAGATCAGTGTTTGCAG+TGG | 0.713574 | 5:-37580462 | None:intergenic |
GCAGTCACTGAAAGGATACG+AGG | 0.737880 | 5:+37580329 | MsG0580026446.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTGCTTTTAAAAATTA+GGG | + | Chr5:37580863-37580882 | MsG0580026446.01.T01:intron | 10.0% |
!! | AAAAATTACGTGTTTAATAA+TGG | - | Chr5:37579124-37579143 | None:intergenic | 15.0% |
!! | AAAATAATATGTCTACTAAA+AGG | - | Chr5:37579685-37579704 | None:intergenic | 15.0% |
!! | AATATGTTATCTAAAAATGT+TGG | + | Chr5:37578867-37578886 | MsG0580026446.01.T01:intron | 15.0% |
!! | TGTACATTCATAATAAATTA+TGG | + | Chr5:37578916-37578935 | MsG0580026446.01.T01:intron | 15.0% |
!!! | AAAGATTTGATTTTTTGATT+TGG | + | Chr5:37578597-37578616 | MsG0580026446.01.T01:intron | 15.0% |
!!! | AAGATTTGATTTTTTGATTT+GGG | + | Chr5:37578598-37578617 | MsG0580026446.01.T01:intron | 15.0% |
!!! | AATTTTTAAAAGCAAAAAAC+TGG | - | Chr5:37580862-37580881 | None:intergenic | 15.0% |
!!! | CATTAATAAATTATTTCTGA+TGG | + | Chr5:37580377-37580396 | MsG0580026446.01.T01:intron | 15.0% |
!!! | GTTTTTTGCTTTTAAAAATT+AGG | + | Chr5:37580862-37580881 | MsG0580026446.01.T01:intron | 15.0% |
!!! | TTTTATTTTAATTTTGAAGG+TGG | + | Chr5:37578688-37578707 | MsG0580026446.01.T01:intron | 15.0% |
!! | AAAGTATAGGTATATATTGT+TGG | + | Chr5:37580941-37580960 | MsG0580026446.01.T01:intron | 20.0% |
!! | AAGTATAGGTATATATTGTT+GGG | + | Chr5:37580942-37580961 | MsG0580026446.01.T01:intron | 20.0% |
!! | AGATATAGATACTACATTAT+AGG | + | Chr5:37579947-37579966 | MsG0580026446.01.T01:intron | 20.0% |
!! | ATAATAAATTATGGATGTGT+TGG | + | Chr5:37578925-37578944 | MsG0580026446.01.T01:intron | 20.0% |
!! | ATCTTCTAAATTGAGAAATT+TGG | + | Chr5:37578841-37578860 | MsG0580026446.01.T01:intron | 20.0% |
!! | ATTGAACAATTCACTTTAAA+AGG | - | Chr5:37578998-37579017 | None:intergenic | 20.0% |
!!! | AAATTATACAGTTTTCAACA+TGG | - | Chr5:37579200-37579219 | None:intergenic | 20.0% |
!!! | CTTTGAATTCTAGTTAATTA+TGG | + | Chr5:37579919-37579938 | MsG0580026446.01.T01:intron | 20.0% |
!!! | GTAATTAAGCTTTTGTTATT+TGG | + | Chr5:37581207-37581226 | MsG0580026446.01.T01:intron | 20.0% |
!!! | TGTTATTTTTTAATGGGTTT+GGG | + | Chr5:37578486-37578505 | MsG0580026446.01.T01:intron | 20.0% |
!!! | TTGTTATTTTTTAATGGGTT+TGG | + | Chr5:37578485-37578504 | MsG0580026446.01.T01:intron | 20.0% |
! | AAAATAAGCATAAGGAAATC+AGG | - | Chr5:37580236-37580255 | None:intergenic | 25.0% |
! | AAATAAGCATAAGGAAATCA+GGG | - | Chr5:37580235-37580254 | None:intergenic | 25.0% |
! | AAGAGATTTCATATCACATA+AGG | - | Chr5:37580183-37580202 | None:intergenic | 25.0% |
! | AGTTAGGAGTTTAATAAACA+AGG | - | Chr5:37580029-37580048 | None:intergenic | 25.0% |
! | ATCAAATCAAACAAGTAACA+CGG | - | Chr5:37578802-37578821 | None:intergenic | 25.0% |
! | ATGTATTCAATATGCAGAAA+TGG | + | Chr5:37579250-37579269 | MsG0580026446.01.T01:intron | 25.0% |
! | ATTAAAAATCTTGGATCTCA+GGG | - | Chr5:37580897-37580916 | None:intergenic | 25.0% |
! | CATTATAGGTTATAGATTAC+AGG | + | Chr5:37579961-37579980 | MsG0580026446.01.T01:intron | 25.0% |
! | GCTTAATTACACAATTAACT+AGG | - | Chr5:37581197-37581216 | None:intergenic | 25.0% |
! | GTTAGGAGTTTAATAAACAA+GGG | - | Chr5:37580028-37580047 | None:intergenic | 25.0% |
! | GTTTCTATCTATTGTCTAAA+TGG | + | Chr5:37580607-37580626 | MsG0580026446.01.T01:intron | 25.0% |
!! | AGATCAATCATTTTCTAGAT+TGG | + | Chr5:37578638-37578657 | MsG0580026446.01.T01:intron | 25.0% |
!!! | ATCTGTTTTTTGTTGTGATT+TGG | + | Chr5:37578550-37578569 | MsG0580026446.01.T01:intron | 25.0% |
!!! | TCACAACTGTTTTGATTATT+AGG | + | Chr5:37580430-37580449 | MsG0580026446.01.T01:intron | 25.0% |
!!! | TCTGTTTTTTGTTGTGATTT+GGG | + | Chr5:37578551-37578570 | MsG0580026446.01.T01:intron | 25.0% |
!!! | TTTGATTTGATGCTTAGATT+AGG | + | Chr5:37578811-37578830 | MsG0580026446.01.T01:intron | 25.0% |
AAACATAGAATCTGTATGAC+TGG | + | Chr5:37579734-37579753 | MsG0580026446.01.T01:intron | 30.0% | |
AAAGGTTAATACTCTCTTAC+AGG | + | Chr5:37581270-37581289 | MsG0580026446.01.T01:intron | 30.0% | |
AAATTAATCTTCCCCTGATA+CGG | - | Chr5:37579148-37579167 | None:intergenic | 30.0% | |
ACAACAGTAATGACTAATGA+TGG | + | Chr5:37579036-37579055 | MsG0580026446.01.T01:intron | 30.0% | |
ACCTATACTTTCAATGTGTT+TGG | - | Chr5:37580932-37580951 | None:intergenic | 30.0% | |
AGTAGGACTTAATCATGAAA+CGG | - | Chr5:37579821-37579840 | None:intergenic | 30.0% | |
ATAGGTATATATTGTTGGGT+AGG | + | Chr5:37580946-37580965 | MsG0580026446.01.T01:intron | 30.0% | |
ATGATAAGGACTACGAAATA+TGG | + | Chr5:37580071-37580090 | MsG0580026446.01.T01:intron | 30.0% | |
CAACAGTAATGACTAATGAT+GGG | + | Chr5:37579037-37579056 | MsG0580026446.01.T01:intron | 30.0% | |
GATTAAAAATCTTGGATCTC+AGG | - | Chr5:37580898-37580917 | None:intergenic | 30.0% | |
GTTGGATATAAAAACGTCAT+TGG | + | Chr5:37579341-37579360 | MsG0580026446.01.T01:CDS | 30.0% | |
TACTTTCAATGTGTTTGGTT+TGG | - | Chr5:37580927-37580946 | None:intergenic | 30.0% | |
TATAGGGTTTCAGATAAAGA+TGG | + | Chr5:37579884-37579903 | MsG0580026446.01.T01:intron | 30.0% | |
TATATTCCGCTCAAGTTATA+GGG | + | Chr5:37579868-37579887 | MsG0580026446.01.T01:intron | 30.0% | |
TCTATCTATTGTCTAAATGG+TGG | + | Chr5:37580610-37580629 | MsG0580026446.01.T01:intron | 30.0% | |
TGGATAATTTATCCAATAGC+AGG | - | Chr5:37581123-37581142 | None:intergenic | 30.0% | |
TGTGATATGAAATCTCTTTC+TGG | + | Chr5:37580185-37580204 | MsG0580026446.01.T01:intron | 30.0% | |
TTATATTCCGCTCAAGTTAT+AGG | + | Chr5:37579867-37579886 | MsG0580026446.01.T01:intron | 30.0% | |
! | ACAATATGACTATGGTTTTC+TGG | - | Chr5:37581143-37581162 | None:intergenic | 30.0% |
! | ACCAAACACATTGAAAGTAT+AGG | + | Chr5:37580928-37580947 | MsG0580026446.01.T01:intron | 30.0% |
! | ACGTAATTTTTACCGTATCA+GGG | + | Chr5:37579133-37579152 | MsG0580026446.01.T01:intron | 30.0% |
! | GAGATCCAAGATTTTTAATC+TGG | + | Chr5:37580898-37580917 | MsG0580026446.01.T01:intron | 30.0% |
! | TTATTGATGTGTCATTGTGT+TGG | + | Chr5:37578772-37578791 | MsG0580026446.01.T01:intron | 30.0% |
! | TTCACTGTTAGATTCTAGTT+AGG | - | Chr5:37580045-37580064 | None:intergenic | 30.0% |
! | TTCATATCTTTCAGCTTGTT+CGG | - | Chr5:37578449-37578468 | None:intergenic | 30.0% |
!! | GGTATGTATAAGATTGGTTT+CGG | + | Chr5:37581338-37581357 | MsG0580026446.01.T01:CDS | 30.0% |
!! | TTACGTGTTTAATAATGGAC+TGG | - | Chr5:37579119-37579138 | None:intergenic | 30.0% |
!!! | CCTAATTTTTTGACAAGGTT+GGG | - | Chr5:37581076-37581095 | None:intergenic | 30.0% |
!!! | CTAATTTTTTGACAAGGTTG+GGG | - | Chr5:37581075-37581094 | None:intergenic | 30.0% |
!!! | CTCATCCTAATTTTTTGACA+AGG | - | Chr5:37581081-37581100 | None:intergenic | 30.0% |
!!! | TCCTAATTTTTTGACAAGGT+TGG | - | Chr5:37581077-37581096 | None:intergenic | 30.0% |
AAGAAGAAGAAGAAATGGGA+TGG | - | Chr5:37578319-37578338 | None:intergenic | 35.0% | |
AATTTCAACGACGCAATCAA+AGG | - | Chr5:37578959-37578978 | None:intergenic | 35.0% | |
ACAGTGAAGAACTCATGATA+AGG | + | Chr5:37580057-37580076 | MsG0580026446.01.T01:intron | 35.0% | |
ACCAATCTTATACATACCTC+AGG | - | Chr5:37581336-37581355 | None:intergenic | 35.0% | |
ACTTGATGTTGAACTAACTG+TGG | + | Chr5:37579298-37579317 | MsG0580026446.01.T01:CDS | 35.0% | |
AGAAGAAGAAGAAATGGGAT+GGG | - | Chr5:37578318-37578337 | None:intergenic | 35.0% | |
AGATTATGAACTCTCCTGAA+AGG | + | Chr5:37580540-37580559 | MsG0580026446.01.T01:CDS | 35.0% | |
AGGCAAAGAAGAAGAAGAAA+TGG | - | Chr5:37578324-37578343 | None:intergenic | 35.0% | |
AGGTGGATAACAAATATGCA+AGG | - | Chr5:37579785-37579804 | None:intergenic | 35.0% | |
ATCAGAGAAAAACTCAAAGG+AGG | - | Chr5:37578344-37578363 | None:intergenic | 35.0% | |
ATTTCAACGACGCAATCAAA+GGG | - | Chr5:37578958-37578977 | None:intergenic | 35.0% | |
CAAAAAACTGGAGATCTTGA+AGG | - | Chr5:37580850-37580869 | None:intergenic | 35.0% | |
CCCAACCTTGTCAAAAAATT+AGG | + | Chr5:37581073-37581092 | MsG0580026446.01.T01:intron | 35.0% | |
CCTGCATCAAAATAAGCATA+AGG | - | Chr5:37580244-37580263 | None:intergenic | 35.0% | |
GAACAAGCTGAAAGATATGA+AGG | + | Chr5:37578448-37578467 | MsG0580026446.01.T01:CDS | 35.0% | |
GAGATCAGAGAAAAACTCAA+AGG | - | Chr5:37578347-37578366 | None:intergenic | 35.0% | |
GATTATCGCTATCTTCGTTA+TGG | + | Chr5:37579648-37579667 | MsG0580026446.01.T01:intron | 35.0% | |
GGCAAAGAAGAAGAAGAAAT+GGG | - | Chr5:37578323-37578342 | None:intergenic | 35.0% | |
GGCATCCAGATTAAAAATCT+TGG | - | Chr5:37580906-37580925 | None:intergenic | 35.0% | |
GGTTGAATGTATGAAGAAAG+TGG | + | Chr5:37579271-37579290 | MsG0580026446.01.T01:CDS | 35.0% | |
GTAGGACTTAATCATGAAAC+GGG | - | Chr5:37579820-37579839 | None:intergenic | 35.0% | |
GTATATATTGTTGGGTAGGT+TGG | + | Chr5:37580950-37580969 | MsG0580026446.01.T01:intron | 35.0% | |
GTGATGTTATAGACCCAAAT+TGG | + | Chr5:37579093-37579112 | MsG0580026446.01.T01:intron | 35.0% | |
TCCAATGACTCATTCATAGT+AGG | - | Chr5:37579838-37579857 | None:intergenic | 35.0% | |
TCCTACTATGAATGAGTCAT+TGG | + | Chr5:37579834-37579853 | MsG0580026446.01.T01:intron | 35.0% | |
TGATGCTTAGATTAGGAAAC+TGG | + | Chr5:37578818-37578837 | MsG0580026446.01.T01:intron | 35.0% | |
TTAATACTCTCTTACAGGTG+AGG | + | Chr5:37581275-37581294 | MsG0580026446.01.T01:intron | 35.0% | |
TTGGGTCTATAACATCACTT+TGG | - | Chr5:37579091-37579110 | None:intergenic | 35.0% | |
! | ATGGTGGTGATAAAACTTAC+AGG | + | Chr5:37580626-37580645 | MsG0580026446.01.T01:intron | 35.0% |
! | CACGTAATTTTTACCGTATC+AGG | + | Chr5:37579132-37579151 | MsG0580026446.01.T01:intron | 35.0% |
! | CAGAATATCACCACAGATTT+TGG | - | Chr5:37579486-37579505 | None:intergenic | 35.0% |
! | CGTAATTTTTACCGTATCAG+GGG | + | Chr5:37579134-37579153 | MsG0580026446.01.T01:intron | 35.0% |
! | CGTTTTTATATCCAACTGAG+AGG | - | Chr5:37579337-37579356 | None:intergenic | 35.0% |
! | CTAATGATGGGAATTATGCT+TGG | + | Chr5:37579049-37579068 | MsG0580026446.01.T01:intron | 35.0% |
! | CTCTGGAAACAATATGACTA+TGG | - | Chr5:37581151-37581170 | None:intergenic | 35.0% |
! | TCCTACTAAAGAGGTTCTAA+AGG | + | Chr5:37581252-37581271 | MsG0580026446.01.T01:intron | 35.0% |
! | TGGTGGTGATAAAACTTACA+GGG | + | Chr5:37580627-37580646 | MsG0580026446.01.T01:intron | 35.0% |
! | TTTTATATCCAACTGAGAGG+AGG | - | Chr5:37579334-37579353 | None:intergenic | 35.0% |
!! | AATAATGGACTGGCCAATTT+GGG | - | Chr5:37579109-37579128 | None:intergenic | 35.0% |
!! | ACCTTTAGAACCTCTTTAGT+AGG | - | Chr5:37581256-37581275 | None:intergenic | 35.0% |
!! | TAATAATGGACTGGCCAATT+TGG | - | Chr5:37579110-37579129 | None:intergenic | 35.0% |
!! | TTGCATATTTGTTATCCACC+TGG | + | Chr5:37579784-37579803 | MsG0580026446.01.T01:intron | 35.0% |
!! | TTTGGCTTCTTCAGCTTTTA+TGG | - | Chr5:37581304-37581323 | None:intergenic | 35.0% |
!!! | CCTTATGCTTATTTTGATGC+AGG | + | Chr5:37580241-37580260 | MsG0580026446.01.T01:intron | 35.0% |
!!! | CTTATTTTGATGCAGGAAAG+GGG | + | Chr5:37580248-37580267 | MsG0580026446.01.T01:intron | 35.0% |
!!! | GCTTATTTTGATGCAGGAAA+GGG | + | Chr5:37580247-37580266 | MsG0580026446.01.T01:intron | 35.0% |
!!! | TGCTTATTTTGATGCAGGAA+AGG | + | Chr5:37580246-37580265 | MsG0580026446.01.T01:intron | 35.0% |
AAAGCTTGGCCAAGTAAACT+TGG | - | Chr5:37578426-37578445 | None:intergenic | 40.0% | |
AAGCTTGGCCAAGTAAACTT+GGG | - | Chr5:37578425-37578444 | None:intergenic | 40.0% | |
ATTCAAATCCTTTCCGACTG+TGG | + | Chr5:37579619-37579638 | MsG0580026446.01.T01:intron | 40.0% | |
CATAGAATCTGTATGACTGG+TGG | + | Chr5:37579737-37579756 | MsG0580026446.01.T01:intron | 40.0% | |
CGAAGATAGCGATAATCTGA+TGG | - | Chr5:37579645-37579664 | None:intergenic | 40.0% | |
CGATTCTCTCATACTTTGCA+TGG | + | Chr5:37580571-37580590 | MsG0580026446.01.T01:intron | 40.0% | |
CTGAAACCCTATAACTTGAG+CGG | - | Chr5:37579877-37579896 | None:intergenic | 40.0% | |
GAATCGATTGCTTACCTTTC+AGG | - | Chr5:37580557-37580576 | None:intergenic | 40.0% | |
GACAATTATTGACCAGCATC+TGG | + | Chr5:37579505-37579524 | MsG0580026446.01.T01:CDS | 40.0% | |
GATCAAGAGTTACTGCCAAA+AGG | + | Chr5:37579445-37579464 | MsG0580026446.01.T01:CDS | 40.0% | |
GATTACTCTTGCGGTGATTA+GGG | - | Chr5:37581030-37581049 | None:intergenic | 40.0% | |
GCCTGAGGTATGTATAAGAT+TGG | + | Chr5:37581332-37581351 | MsG0580026446.01.T01:CDS | 40.0% | |
GGACTACGAAATATGGAAAC+TGG | + | Chr5:37580078-37580097 | MsG0580026446.01.T01:intron | 40.0% | |
TAAGAAACTGTGCCTGCTAT+TGG | + | Chr5:37581108-37581127 | MsG0580026446.01.T01:intron | 40.0% | |
TAGAACTGCTCCTACTAAAG+AGG | + | Chr5:37581243-37581262 | MsG0580026446.01.T01:intron | 40.0% | |
TATGTCCTCAATTGAGCAGA+AGG | + | Chr5:37579388-37579407 | MsG0580026446.01.T01:CDS | 40.0% | |
TCACTAGAAGAAACTCACTC+TGG | - | Chr5:37581168-37581187 | None:intergenic | 40.0% | |
TCTTGAACTCAGCAAGATAC+CGG | - | Chr5:37580281-37580300 | None:intergenic | 40.0% | |
TGATTACTCTTGCGGTGATT+AGG | - | Chr5:37581031-37581050 | None:intergenic | 40.0% | |
TGATTAGGGACAAGTCAACT+TGG | - | Chr5:37581016-37581035 | None:intergenic | 40.0% | |
TTGAACTAACTGTGGAAGAG+AGG | + | Chr5:37579306-37579325 | MsG0580026446.01.T01:CDS | 40.0% | |
TTGGCATTCCATATCCTAGT+GGG | + | Chr5:37580969-37580988 | MsG0580026446.01.T01:intron | 40.0% | |
! | AAGTCAACTTGGTGGACAAT+GGG | - | Chr5:37581005-37581024 | None:intergenic | 40.0% |
! | CAAAAGCTTGTTTGGCCAAA+TGG | - | Chr5:37580657-37580676 | None:intergenic | 40.0% |
! | GTTCTTGCTGATGCATTGAT+TGG | + | Chr5:37578710-37578729 | MsG0580026446.01.T01:intron | 40.0% |
! | TTTTTGACAAGGTTGGGGTA+AGG | - | Chr5:37581070-37581089 | None:intergenic | 40.0% |
AAGATCAGTGTTTGCAGTGG+CGG | - | Chr5:37580462-37580481 | None:intergenic | 45.0% | |
AGTTGAGTGCAAGTCCAAGA+CGG | - | Chr5:37580502-37580521 | None:intergenic | 45.0% | |
CATTTGTCCCCACTAGGATA+TGG | - | Chr5:37580980-37580999 | None:intergenic | 45.0% | |
CGAGTGGATGATTACTCTTG+CGG | - | Chr5:37581039-37581058 | None:intergenic | 45.0% | |
CTTGAGTGAAGAGTCGTACA+AGG | + | Chr5:37580702-37580721 | MsG0580026446.01.T01:CDS | 45.0% | |
CTTGTACGACTCTTCACTCA+AGG | - | Chr5:37580704-37580723 | None:intergenic | 45.0% | |
GACTGACCAAGAGAGAAAAG+AGG | + | Chr5:37580299-37580318 | MsG0580026446.01.T01:CDS | 45.0% | |
GAGAGAGACCCAAGTTTACT+TGG | + | Chr5:37578414-37578433 | MsG0580026446.01.T01:CDS | 45.0% | |
GAGGAACTCTCCAAAATCTG+TGG | + | Chr5:37579473-37579492 | MsG0580026446.01.T01:CDS | 45.0% | |
GAGTTACTGCCAAAAGGTTG+AGG | + | Chr5:37579451-37579470 | MsG0580026446.01.T01:CDS | 45.0% | |
GATAATCTGATGGCCACAGT+CGG | - | Chr5:37579635-37579654 | None:intergenic | 45.0% | |
GCAGGAAAGGGGATTATTTC+CGG | + | Chr5:37580259-37580278 | MsG0580026446.01.T01:intron | 45.0% | |
GGGTAAGGATACAAATCGAG+TGG | - | Chr5:37581055-37581074 | None:intergenic | 45.0% | |
GTTGGCATTCCATATCCTAG+TGG | + | Chr5:37580968-37580987 | MsG0580026446.01.T01:intron | 45.0% | |
TATACATACCTCAGGCTCAG+CGG | - | Chr5:37581328-37581347 | None:intergenic | 45.0% | |
TCAACACATCCAATCCGTCT+TGG | + | Chr5:37580485-37580504 | MsG0580026446.01.T01:CDS | 45.0% | |
TGGAAGATCAGTGTTTGCAG+TGG | - | Chr5:37580465-37580484 | None:intergenic | 45.0% | |
TGGCATTCCATATCCTAGTG+GGG | + | Chr5:37580970-37580989 | MsG0580026446.01.T01:intron | 45.0% | |
TTACTGCCAAAAGGTTGAGG+AGG | + | Chr5:37579454-37579473 | MsG0580026446.01.T01:CDS | 45.0% | |
TTAGGGACAAGTCAACTTGG+TGG | - | Chr5:37581013-37581032 | None:intergenic | 45.0% | |
! | AGAGTTCCTCCTCAACCTTT+TGG | - | Chr5:37579463-37579482 | None:intergenic | 45.0% |
! | CAAGTCAACTTGGTGGACAA+TGG | - | Chr5:37581006-37581025 | None:intergenic | 45.0% |
! | CGCCTCATCAAAAGCTTGTT+TGG | - | Chr5:37580665-37580684 | None:intergenic | 45.0% |
! | GAAAACATTAGCTTCTGCCG+AGG | - | Chr5:37579543-37579562 | None:intergenic | 45.0% |
! | GGCCAAACAAGCTTTTGATG+AGG | + | Chr5:37580660-37580679 | MsG0580026446.01.T01:CDS | 45.0% |
! | TTCAGCTTGTTCGGAAAGCT+TGG | - | Chr5:37578440-37578459 | None:intergenic | 45.0% |
!! | AGACGGATTGGATGTGTTGA+TGG | - | Chr5:37580485-37580504 | None:intergenic | 45.0% |
!! | TTTCTGGCTCACACGTACTT+TGG | + | Chr5:37580201-37580220 | MsG0580026446.01.T01:intron | 45.0% |
!!! | TAATTTTGTTATTTTTTAAT+GGG | + | Chr5:37578480-37578499 | MsG0580026446.01.T01:intron | 5.0% |
!!! | TTAATTTTGTTATTTTTTAA+TGG | + | Chr5:37578479-37578498 | MsG0580026446.01.T01:intron | 5.0% |
!!! | TTATTTTATTTTAATTTTGA+AGG | + | Chr5:37578685-37578704 | MsG0580026446.01.T01:intron | 5.0% |
AACTTACAGGGCCTGCCATT+TGG | + | Chr5:37580639-37580658 | MsG0580026446.01.T01:intron | 50.0% | |
AATCAGAGGTCCAGAGAGTC+AGG | - | Chr5:37580762-37580781 | None:intergenic | 50.0% | |
AGTGCAAGTCCAAGACGGAT+TGG | - | Chr5:37580497-37580516 | None:intergenic | 50.0% | |
ATACATACCTCAGGCTCAGC+GGG | - | Chr5:37581327-37581346 | None:intergenic | 50.0% | |
CTCCTCCTTCTGCTCAATTG+AGG | - | Chr5:37579396-37579415 | None:intergenic | 50.0% | |
GAGCAGAAGGAGGAGTCTAA+GGG | + | Chr5:37579401-37579420 | MsG0580026446.01.T01:CDS | 50.0% | |
GCAGTCACTGAAAGGATACG+AGG | + | Chr5:37580329-37580348 | MsG0580026446.01.T01:CDS | 50.0% | |
GGTCTCTCTCTCTTTCTCAG+CGG | - | Chr5:37578404-37578423 | None:intergenic | 50.0% | |
GTCCTCAATTGAGCAGAAGG+AGG | + | Chr5:37579391-37579410 | MsG0580026446.01.T01:CDS | 50.0% | |
TATCCCTTACCTCCATCCTC+TGG | - | Chr5:37580787-37580806 | None:intergenic | 50.0% | |
TCCATCCTCTGGCAAATCAG+AGG | - | Chr5:37580776-37580795 | None:intergenic | 50.0% | |
TGAGAGACAACCTGACTCTC+TGG | + | Chr5:37580749-37580768 | MsG0580026446.01.T01:CDS | 50.0% | |
TGAGCAGAAGGAGGAGTCTA+AGG | + | Chr5:37579400-37579419 | MsG0580026446.01.T01:CDS | 50.0% | |
TGATGAGGCGATTGCAGAGT+TGG | + | Chr5:37580675-37580694 | MsG0580026446.01.T01:CDS | 50.0% | |
TTGCCAGAGGATGGAGGTAA+GGG | + | Chr5:37580781-37580800 | MsG0580026446.01.T01:intron | 50.0% | |
TTGGTGCACGAAGAGCTTCA+TGG | + | Chr5:37579360-37579379 | MsG0580026446.01.T01:CDS | 50.0% | |
TTTGCCAGAGGATGGAGGTA+AGG | + | Chr5:37580780-37580799 | MsG0580026446.01.T01:intron | 50.0% | |
! | AACATTAGCTTCTGCCGAGG+TGG | - | Chr5:37579540-37579559 | None:intergenic | 50.0% |
! | ACCTCTGATTTGCCAGAGGA+TGG | + | Chr5:37580772-37580791 | MsG0580026446.01.T01:CDS | 50.0% |
! | AGCTTGTTTGGCCAAATGGC+AGG | - | Chr5:37580653-37580672 | None:intergenic | 50.0% |
! | CAGCAGCCTCTTTTCTCTCT+TGG | - | Chr5:37580308-37580327 | None:intergenic | 50.0% |
! | TCTGATTTGCCAGAGGATGG+AGG | + | Chr5:37580775-37580794 | MsG0580026446.01.T01:CDS | 50.0% |
GAAACGGGTGCTCATCTACC+AGG | - | Chr5:37579805-37579824 | None:intergenic | 55.0% | |
GAGAGGAACCTCCTCTCAGT+TGG | + | Chr5:37579323-37579342 | MsG0580026446.01.T01:CDS | 55.0% | |
GCTGCTGAGCAGTCACTGAA+AGG | + | Chr5:37580321-37580340 | MsG0580026446.01.T01:CDS | 55.0% | |
TCTGATGGCCACAGTCGGAA+AGG | - | Chr5:37579630-37579649 | None:intergenic | 55.0% | |
TGGAAGCAGGAACCAGATGC+TGG | - | Chr5:37579520-37579539 | None:intergenic | 55.0% | |
! | CTGGACCTCTGATTTGCCAG+AGG | + | Chr5:37580768-37580787 | MsG0580026446.01.T01:CDS | 55.0% |
! | TCTGGTTCCTGCTTCCACCT+CGG | + | Chr5:37579523-37579542 | MsG0580026446.01.T01:CDS | 55.0% |
!! | TGGGAGCATTTGTCCCCACT+AGG | - | Chr5:37580986-37581005 | None:intergenic | 55.0% |
ACGGGTGCTCATCTACCAGG+TGG | - | Chr5:37579802-37579821 | None:intergenic | 60.0% | |
! | TACCTCAGGCTCAGCGGGTT+TGG | - | Chr5:37581322-37581341 | None:intergenic | 60.0% |
AGCCAAACCCGCTGAGCCTG+AGG | + | Chr5:37581317-37581336 | MsG0580026446.01.T01:CDS | 65.0% | |
GCTTCTGCCGAGGTGGAAGC+AGG | - | Chr5:37579533-37579552 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 37578311 | 37581425 | 37578311 | ID=MsG0580026446.01;Name=MsG0580026446.01 |
Chr5 | mRNA | 37578311 | 37581425 | 37578311 | ID=MsG0580026446.01.T01;Parent=MsG0580026446.01;Name=MsG0580026446.01.T01;_AED=0.38;_eAED=0.43;_QI=86|1|0.83|1|0.8|0.66|6|0|286 |
Chr5 | exon | 37578311 | 37578469 | 37578311 | ID=MsG0580026446.01.T01:exon:22054;Parent=MsG0580026446.01.T01 |
Chr5 | exon | 37579267 | 37579573 | 37579267 | ID=MsG0580026446.01.T01:exon:22055;Parent=MsG0580026446.01.T01 |
Chr5 | exon | 37580263 | 37580350 | 37580263 | ID=MsG0580026446.01.T01:exon:22056;Parent=MsG0580026446.01.T01 |
Chr5 | exon | 37580452 | 37580561 | 37580452 | ID=MsG0580026446.01.T01:exon:22057;Parent=MsG0580026446.01.T01 |
Chr5 | exon | 37580648 | 37580796 | 37580648 | ID=MsG0580026446.01.T01:exon:22058;Parent=MsG0580026446.01.T01 |
Chr5 | exon | 37581292 | 37581425 | 37581292 | ID=MsG0580026446.01.T01:exon:22059;Parent=MsG0580026446.01.T01 |
Chr5 | five_prime_UTR | 37578311 | 37578396 | 37578311 | ID=MsG0580026446.01.T01:five_prime_utr;Parent=MsG0580026446.01.T01 |
Chr5 | CDS | 37578397 | 37578469 | 37578397 | ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01 |
Chr5 | CDS | 37579267 | 37579573 | 37579267 | ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01 |
Chr5 | CDS | 37580263 | 37580350 | 37580263 | ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01 |
Chr5 | CDS | 37580452 | 37580561 | 37580452 | ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01 |
Chr5 | CDS | 37580648 | 37580796 | 37580648 | ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01 |
Chr5 | CDS | 37581292 | 37581425 | 37581292 | ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01 |
Gene Sequence |
Protein sequence |