AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026446.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026446.01.T01 MTR_5g044160 99.612 258 1 0 1 258 1 258 0.0 528
MsG0580026446.01.T01 MTR_4g083060 89.147 258 27 1 1 258 1 257 4.91e-173 479
MsG0580026446.01.T01 MTR_2g091225 75.502 249 60 1 1 249 1 248 6.94e-142 400
MsG0580026446.01.T01 MTR_8g086270 76.735 245 57 0 1 245 1 245 9.67e-141 397
MsG0580026446.01.T01 MTR_2g076960 74.897 243 61 0 7 249 8 250 8.58e-138 389
MsG0580026446.01.T01 MTR_2g015980 74.897 243 59 2 11 253 9 249 1.18e-134 381
MsG0580026446.01.T01 MTR_2g091225 76.000 225 53 1 25 249 2 225 4.38e-129 366
MsG0580026446.01.T01 MTR_3g099380 70.817 257 72 3 2 256 3 258 4.99e-127 362
MsG0580026446.01.T01 MTR_5g064580 68.627 255 75 2 2 254 3 254 1.85e-123 353
MsG0580026446.01.T01 MTR_3g100620 66.245 237 77 1 7 240 11 247 1.04e-112 325
MsG0580026446.01.T01 MTR_3g099380 68.657 201 61 2 2 200 3 203 9.17e-95 278
MsG0580026446.01.T01 MTR_0137s0020 52.542 236 102 5 7 237 11 241 1.83e-73 226
MsG0580026446.01.T01 MTR_3g014060 52.119 236 103 5 7 237 11 241 1.22e-72 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026446.01.T01 AT1G26480 84.231 260 36 1 2 256 5 264 3.04e-162 451
MsG0580026446.01.T01 AT1G34760 79.835 243 48 1 4 246 2 243 5.33e-143 402
MsG0580026446.01.T01 AT1G34760 79.835 243 48 1 4 246 2 243 5.97e-143 402
MsG0580026446.01.T01 AT2G42590 72.659 267 68 2 1 262 1 267 4.82e-141 398
MsG0580026446.01.T01 AT2G42590 74.219 256 65 1 1 255 1 256 3.27e-140 395
MsG0580026446.01.T01 AT2G42590 73.725 255 67 0 1 255 1 255 6.55e-139 392
MsG0580026446.01.T01 AT1G22300 74.400 250 64 0 4 253 2 251 1.18e-134 381
MsG0580026446.01.T01 AT1G22300 74.400 250 64 0 4 253 2 251 1.32e-134 381
MsG0580026446.01.T01 AT1G22300 76.250 240 57 0 4 243 2 241 2.87e-133 377
MsG0580026446.01.T01 AT1G35160 72.222 252 68 1 7 256 11 262 6.32e-127 362
MsG0580026446.01.T01 AT3G02520 71.705 258 65 3 7 256 5 262 1.49e-126 361
MsG0580026446.01.T01 AT3G02520 71.705 258 65 3 7 256 5 262 1.49e-126 361
MsG0580026446.01.T01 AT5G38480 71.429 252 70 2 7 256 4 255 1.56e-126 361
MsG0580026446.01.T01 AT1G78300 70.635 252 72 2 7 256 5 256 4.94e-125 357
MsG0580026446.01.T01 AT5G38480 72.800 250 63 4 7 254 4 250 1.02e-124 356
MsG0580026446.01.T01 AT5G38480 72.800 250 63 4 7 254 4 250 1.02e-124 356
MsG0580026446.01.T01 AT4G09000 70.732 246 70 1 2 245 5 250 2.82e-123 353
MsG0580026446.01.T01 AT1G35160 74.786 234 57 1 7 238 11 244 7.11e-123 353
MsG0580026446.01.T01 AT4G09000 72.385 239 64 1 2 238 5 243 3.97e-121 349
MsG0580026446.01.T01 AT5G16050 66.288 264 79 2 1 254 1 264 1.51e-119 343
MsG0580026446.01.T01 AT5G16050 66.288 264 79 2 1 254 1 264 1.51e-119 343
MsG0580026446.01.T01 AT5G65430 66.397 247 80 1 1 244 1 247 8.36e-115 331
MsG0580026446.01.T01 AT5G65430 66.803 244 78 1 1 241 1 244 1.16e-114 330
MsG0580026446.01.T01 AT5G65430 67.220 241 76 1 1 238 1 241 1.62e-113 328
MsG0580026446.01.T01 AT5G10450 64.754 244 83 1 1 241 1 244 1.06e-112 325
MsG0580026446.01.T01 AT5G10450 65.021 243 82 1 1 240 1 243 1.11e-112 325
MsG0580026446.01.T01 AT5G10450 65.145 241 81 1 1 238 1 241 5.63e-112 324
MsG0580026446.01.T01 AT5G10450 65.145 241 81 1 1 238 1 241 1.72e-111 323
MsG0580026446.01.T01 AT1G78220 51.709 234 112 1 4 236 2 235 4.60e-82 248
MsG0580026446.01.T01 AT1G22290 49.537 216 85 5 4 214 2 198 1.22e-59 189
MsG0580026446.01.T01 AT1G22290 49.296 213 84 5 4 211 2 195 6.85e-59 187
MsG0580026446.01.T01 AT2G10450 48.387 62 32 0 204 265 16 77 1.22e-12 62.8

Find 68 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCGATTGCTTACCTTTC+AGG 0.105745 5:-37580554 None:intergenic
CAGAATATCACCACAGATTT+TGG 0.109197 5:-37579483 None:intergenic
TGAGCAGAAGGAGGAGTCTA+AGG 0.249783 5:+37579400 MsG0580026446.01.T01:CDS
TTACTATAGATCTATAACTA+TGG 0.277558 5:-37581406 None:intergenic
GCAGGAAAGGGGATTATTTC+CGG 0.289859 5:+37580259 MsG0580026446.01.T01:intron
CGCCTCATCAAAAGCTTGTT+TGG 0.319773 5:-37580662 None:intergenic
AGGCAAAGAAGAAGAAGAAA+TGG 0.328933 5:-37578321 None:intergenic
TACCTCAGGCTCAGCGGGTT+TGG 0.338393 5:-37581319 None:intergenic
AGAGTTCCTCCTCAACCTTT+TGG 0.345006 5:-37579460 None:intergenic
CAAAAGCTTGTTTGGCCAAA+TGG 0.349323 5:-37580654 None:intergenic
AACTTACAGGGCCTGCCATT+TGG 0.370260 5:+37580639 MsG0580026446.01.T01:intron
TTCATATCTTTCAGCTTGTT+CGG 0.370539 5:-37578446 None:intergenic
GAGAGAGACCCAAGTTTACT+TGG 0.378465 5:+37578414 MsG0580026446.01.T01:CDS
GACAATTATTGACCAGCATC+TGG 0.387445 5:+37579505 MsG0580026446.01.T01:CDS
AATCAGAGGTCCAGAGAGTC+AGG 0.404705 5:-37580759 None:intergenic
GGTATGTATAAGATTGGTTT+CGG 0.413833 5:+37581338 MsG0580026446.01.T01:CDS
AAAGCTTGGCCAAGTAAACT+TGG 0.423724 5:-37578423 None:intergenic
TTCAGCTTGTTCGGAAAGCT+TGG 0.436972 5:-37578437 None:intergenic
TGAGAGACAACCTGACTCTC+TGG 0.448857 5:+37580749 MsG0580026446.01.T01:CDS
GCCTGAGGTATGTATAAGAT+TGG 0.450416 5:+37581332 MsG0580026446.01.T01:CDS
AGCTTGTTTGGCCAAATGGC+AGG 0.464126 5:-37580650 None:intergenic
TGATGAGGCGATTGCAGAGT+TGG 0.469932 5:+37580675 MsG0580026446.01.T01:CDS
GGCAAAGAAGAAGAAGAAAT+GGG 0.475683 5:-37578320 None:intergenic
AGACGGATTGGATGTGTTGA+TGG 0.480349 5:-37580482 None:intergenic
GCTTCTGCCGAGGTGGAAGC+AGG 0.494681 5:-37579530 None:intergenic
ATACATACCTCAGGCTCAGC+GGG 0.501637 5:-37581324 None:intergenic
ACCTCTGATTTGCCAGAGGA+TGG 0.501755 5:+37580772 MsG0580026446.01.T01:CDS
GATCAAGAGTTACTGCCAAA+AGG 0.518570 5:+37579445 MsG0580026446.01.T01:CDS
GAACAAGCTGAAAGATATGA+AGG 0.522838 5:+37578448 MsG0580026446.01.T01:CDS
TCTTGAACTCAGCAAGATAC+CGG 0.525675 5:-37580278 None:intergenic
TTGGTGCACGAAGAGCTTCA+TGG 0.527662 5:+37579360 MsG0580026446.01.T01:CDS
CTCCTCCTTCTGCTCAATTG+AGG 0.527914 5:-37579393 None:intergenic
GAGTTACTGCCAAAAGGTTG+AGG 0.532495 5:+37579451 MsG0580026446.01.T01:CDS
TATCCCTTACCTCCATCCTC+TGG 0.533069 5:-37580784 None:intergenic
TGGAAGCAGGAACCAGATGC+TGG 0.540094 5:-37579517 None:intergenic
TCAACACATCCAATCCGTCT+TGG 0.541520 5:+37580485 MsG0580026446.01.T01:CDS
GAGAGGAACCTCCTCTCAGT+TGG 0.543164 5:+37579323 MsG0580026446.01.T01:CDS
AGTGCAAGTCCAAGACGGAT+TGG 0.548630 5:-37580494 None:intergenic
AAGATCAGTGTTTGCAGTGG+CGG 0.557206 5:-37580459 None:intergenic
GACTGACCAAGAGAGAAAAG+AGG 0.559564 5:+37580299 MsG0580026446.01.T01:CDS
ACCAATCTTATACATACCTC+AGG 0.562725 5:-37581333 None:intergenic
AAGAAGAAGAAGAAATGGGA+TGG 0.564884 5:-37578316 None:intergenic
TATGTCCTCAATTGAGCAGA+AGG 0.567548 5:+37579388 MsG0580026446.01.T01:CDS
AGAAGAAGAAGAAATGGGAT+GGG 0.571812 5:-37578315 None:intergenic
AACATTAGCTTCTGCCGAGG+TGG 0.575120 5:-37579537 None:intergenic
AGCCAAACCCGCTGAGCCTG+AGG 0.586083 5:+37581317 MsG0580026446.01.T01:CDS
CTTGAGTGAAGAGTCGTACA+AGG 0.586539 5:+37580702 MsG0580026446.01.T01:CDS
TTGAACTAACTGTGGAAGAG+AGG 0.589747 5:+37579306 MsG0580026446.01.T01:CDS
GAGCAGAAGGAGGAGTCTAA+GGG 0.589752 5:+37579401 MsG0580026446.01.T01:CDS
CTGGACCTCTGATTTGCCAG+AGG 0.595427 5:+37580768 MsG0580026446.01.T01:CDS
GGTTGAATGTATGAAGAAAG+TGG 0.595766 5:+37579271 MsG0580026446.01.T01:CDS
GCTGCTGAGCAGTCACTGAA+AGG 0.600437 5:+37580321 MsG0580026446.01.T01:CDS
AGATTATGAACTCTCCTGAA+AGG 0.605075 5:+37580540 MsG0580026446.01.T01:CDS
CTTGTACGACTCTTCACTCA+AGG 0.608037 5:-37580701 None:intergenic
AAGCTTGGCCAAGTAAACTT+GGG 0.611139 5:-37578422 None:intergenic
TCCATCCTCTGGCAAATCAG+AGG 0.621846 5:-37580773 None:intergenic
GAGGAACTCTCCAAAATCTG+TGG 0.639940 5:+37579473 MsG0580026446.01.T01:CDS
TCTGATTTGCCAGAGGATGG+AGG 0.645454 5:+37580775 MsG0580026446.01.T01:CDS
ACTTGATGTTGAACTAACTG+TGG 0.647498 5:+37579298 MsG0580026446.01.T01:CDS
TTACTGCCAAAAGGTTGAGG+AGG 0.652188 5:+37579454 MsG0580026446.01.T01:CDS
AGTTGAGTGCAAGTCCAAGA+CGG 0.652366 5:-37580499 None:intergenic
GTCCTCAATTGAGCAGAAGG+AGG 0.654997 5:+37579391 MsG0580026446.01.T01:CDS
GGTCTCTCTCTCTTTCTCAG+CGG 0.674609 5:-37578401 None:intergenic
GAAAACATTAGCTTCTGCCG+AGG 0.676043 5:-37579540 None:intergenic
TCTGGTTCCTGCTTCCACCT+CGG 0.676873 5:+37579523 MsG0580026446.01.T01:CDS
TATACATACCTCAGGCTCAG+CGG 0.690490 5:-37581325 None:intergenic
TGGAAGATCAGTGTTTGCAG+TGG 0.713574 5:-37580462 None:intergenic
GCAGTCACTGAAAGGATACG+AGG 0.737880 5:+37580329 MsG0580026446.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGCTTTTAAAAATTA+GGG + Chr5:37580863-37580882 MsG0580026446.01.T01:intron 10.0%
!! AAAAATTACGTGTTTAATAA+TGG - Chr5:37579124-37579143 None:intergenic 15.0%
!! AAAATAATATGTCTACTAAA+AGG - Chr5:37579685-37579704 None:intergenic 15.0%
!! AATATGTTATCTAAAAATGT+TGG + Chr5:37578867-37578886 MsG0580026446.01.T01:intron 15.0%
!! TGTACATTCATAATAAATTA+TGG + Chr5:37578916-37578935 MsG0580026446.01.T01:intron 15.0%
!!! AAAGATTTGATTTTTTGATT+TGG + Chr5:37578597-37578616 MsG0580026446.01.T01:intron 15.0%
!!! AAGATTTGATTTTTTGATTT+GGG + Chr5:37578598-37578617 MsG0580026446.01.T01:intron 15.0%
!!! AATTTTTAAAAGCAAAAAAC+TGG - Chr5:37580862-37580881 None:intergenic 15.0%
!!! CATTAATAAATTATTTCTGA+TGG + Chr5:37580377-37580396 MsG0580026446.01.T01:intron 15.0%
!!! GTTTTTTGCTTTTAAAAATT+AGG + Chr5:37580862-37580881 MsG0580026446.01.T01:intron 15.0%
!!! TTTTATTTTAATTTTGAAGG+TGG + Chr5:37578688-37578707 MsG0580026446.01.T01:intron 15.0%
!! AAAGTATAGGTATATATTGT+TGG + Chr5:37580941-37580960 MsG0580026446.01.T01:intron 20.0%
!! AAGTATAGGTATATATTGTT+GGG + Chr5:37580942-37580961 MsG0580026446.01.T01:intron 20.0%
!! AGATATAGATACTACATTAT+AGG + Chr5:37579947-37579966 MsG0580026446.01.T01:intron 20.0%
!! ATAATAAATTATGGATGTGT+TGG + Chr5:37578925-37578944 MsG0580026446.01.T01:intron 20.0%
!! ATCTTCTAAATTGAGAAATT+TGG + Chr5:37578841-37578860 MsG0580026446.01.T01:intron 20.0%
!! ATTGAACAATTCACTTTAAA+AGG - Chr5:37578998-37579017 None:intergenic 20.0%
!!! AAATTATACAGTTTTCAACA+TGG - Chr5:37579200-37579219 None:intergenic 20.0%
!!! CTTTGAATTCTAGTTAATTA+TGG + Chr5:37579919-37579938 MsG0580026446.01.T01:intron 20.0%
!!! GTAATTAAGCTTTTGTTATT+TGG + Chr5:37581207-37581226 MsG0580026446.01.T01:intron 20.0%
!!! TGTTATTTTTTAATGGGTTT+GGG + Chr5:37578486-37578505 MsG0580026446.01.T01:intron 20.0%
!!! TTGTTATTTTTTAATGGGTT+TGG + Chr5:37578485-37578504 MsG0580026446.01.T01:intron 20.0%
! AAAATAAGCATAAGGAAATC+AGG - Chr5:37580236-37580255 None:intergenic 25.0%
! AAATAAGCATAAGGAAATCA+GGG - Chr5:37580235-37580254 None:intergenic 25.0%
! AAGAGATTTCATATCACATA+AGG - Chr5:37580183-37580202 None:intergenic 25.0%
! AGTTAGGAGTTTAATAAACA+AGG - Chr5:37580029-37580048 None:intergenic 25.0%
! ATCAAATCAAACAAGTAACA+CGG - Chr5:37578802-37578821 None:intergenic 25.0%
! ATGTATTCAATATGCAGAAA+TGG + Chr5:37579250-37579269 MsG0580026446.01.T01:intron 25.0%
! ATTAAAAATCTTGGATCTCA+GGG - Chr5:37580897-37580916 None:intergenic 25.0%
! CATTATAGGTTATAGATTAC+AGG + Chr5:37579961-37579980 MsG0580026446.01.T01:intron 25.0%
! GCTTAATTACACAATTAACT+AGG - Chr5:37581197-37581216 None:intergenic 25.0%
! GTTAGGAGTTTAATAAACAA+GGG - Chr5:37580028-37580047 None:intergenic 25.0%
! GTTTCTATCTATTGTCTAAA+TGG + Chr5:37580607-37580626 MsG0580026446.01.T01:intron 25.0%
!! AGATCAATCATTTTCTAGAT+TGG + Chr5:37578638-37578657 MsG0580026446.01.T01:intron 25.0%
!!! ATCTGTTTTTTGTTGTGATT+TGG + Chr5:37578550-37578569 MsG0580026446.01.T01:intron 25.0%
!!! TCACAACTGTTTTGATTATT+AGG + Chr5:37580430-37580449 MsG0580026446.01.T01:intron 25.0%
!!! TCTGTTTTTTGTTGTGATTT+GGG + Chr5:37578551-37578570 MsG0580026446.01.T01:intron 25.0%
!!! TTTGATTTGATGCTTAGATT+AGG + Chr5:37578811-37578830 MsG0580026446.01.T01:intron 25.0%
AAACATAGAATCTGTATGAC+TGG + Chr5:37579734-37579753 MsG0580026446.01.T01:intron 30.0%
AAAGGTTAATACTCTCTTAC+AGG + Chr5:37581270-37581289 MsG0580026446.01.T01:intron 30.0%
AAATTAATCTTCCCCTGATA+CGG - Chr5:37579148-37579167 None:intergenic 30.0%
ACAACAGTAATGACTAATGA+TGG + Chr5:37579036-37579055 MsG0580026446.01.T01:intron 30.0%
ACCTATACTTTCAATGTGTT+TGG - Chr5:37580932-37580951 None:intergenic 30.0%
AGTAGGACTTAATCATGAAA+CGG - Chr5:37579821-37579840 None:intergenic 30.0%
ATAGGTATATATTGTTGGGT+AGG + Chr5:37580946-37580965 MsG0580026446.01.T01:intron 30.0%
ATGATAAGGACTACGAAATA+TGG + Chr5:37580071-37580090 MsG0580026446.01.T01:intron 30.0%
CAACAGTAATGACTAATGAT+GGG + Chr5:37579037-37579056 MsG0580026446.01.T01:intron 30.0%
GATTAAAAATCTTGGATCTC+AGG - Chr5:37580898-37580917 None:intergenic 30.0%
GTTGGATATAAAAACGTCAT+TGG + Chr5:37579341-37579360 MsG0580026446.01.T01:CDS 30.0%
TACTTTCAATGTGTTTGGTT+TGG - Chr5:37580927-37580946 None:intergenic 30.0%
TATAGGGTTTCAGATAAAGA+TGG + Chr5:37579884-37579903 MsG0580026446.01.T01:intron 30.0%
TATATTCCGCTCAAGTTATA+GGG + Chr5:37579868-37579887 MsG0580026446.01.T01:intron 30.0%
TCTATCTATTGTCTAAATGG+TGG + Chr5:37580610-37580629 MsG0580026446.01.T01:intron 30.0%
TGGATAATTTATCCAATAGC+AGG - Chr5:37581123-37581142 None:intergenic 30.0%
TGTGATATGAAATCTCTTTC+TGG + Chr5:37580185-37580204 MsG0580026446.01.T01:intron 30.0%
TTATATTCCGCTCAAGTTAT+AGG + Chr5:37579867-37579886 MsG0580026446.01.T01:intron 30.0%
! ACAATATGACTATGGTTTTC+TGG - Chr5:37581143-37581162 None:intergenic 30.0%
! ACCAAACACATTGAAAGTAT+AGG + Chr5:37580928-37580947 MsG0580026446.01.T01:intron 30.0%
! ACGTAATTTTTACCGTATCA+GGG + Chr5:37579133-37579152 MsG0580026446.01.T01:intron 30.0%
! GAGATCCAAGATTTTTAATC+TGG + Chr5:37580898-37580917 MsG0580026446.01.T01:intron 30.0%
! TTATTGATGTGTCATTGTGT+TGG + Chr5:37578772-37578791 MsG0580026446.01.T01:intron 30.0%
! TTCACTGTTAGATTCTAGTT+AGG - Chr5:37580045-37580064 None:intergenic 30.0%
! TTCATATCTTTCAGCTTGTT+CGG - Chr5:37578449-37578468 None:intergenic 30.0%
!! GGTATGTATAAGATTGGTTT+CGG + Chr5:37581338-37581357 MsG0580026446.01.T01:CDS 30.0%
!! TTACGTGTTTAATAATGGAC+TGG - Chr5:37579119-37579138 None:intergenic 30.0%
!!! CCTAATTTTTTGACAAGGTT+GGG - Chr5:37581076-37581095 None:intergenic 30.0%
!!! CTAATTTTTTGACAAGGTTG+GGG - Chr5:37581075-37581094 None:intergenic 30.0%
!!! CTCATCCTAATTTTTTGACA+AGG - Chr5:37581081-37581100 None:intergenic 30.0%
!!! TCCTAATTTTTTGACAAGGT+TGG - Chr5:37581077-37581096 None:intergenic 30.0%
AAGAAGAAGAAGAAATGGGA+TGG - Chr5:37578319-37578338 None:intergenic 35.0%
AATTTCAACGACGCAATCAA+AGG - Chr5:37578959-37578978 None:intergenic 35.0%
ACAGTGAAGAACTCATGATA+AGG + Chr5:37580057-37580076 MsG0580026446.01.T01:intron 35.0%
ACCAATCTTATACATACCTC+AGG - Chr5:37581336-37581355 None:intergenic 35.0%
ACTTGATGTTGAACTAACTG+TGG + Chr5:37579298-37579317 MsG0580026446.01.T01:CDS 35.0%
AGAAGAAGAAGAAATGGGAT+GGG - Chr5:37578318-37578337 None:intergenic 35.0%
AGATTATGAACTCTCCTGAA+AGG + Chr5:37580540-37580559 MsG0580026446.01.T01:CDS 35.0%
AGGCAAAGAAGAAGAAGAAA+TGG - Chr5:37578324-37578343 None:intergenic 35.0%
AGGTGGATAACAAATATGCA+AGG - Chr5:37579785-37579804 None:intergenic 35.0%
ATCAGAGAAAAACTCAAAGG+AGG - Chr5:37578344-37578363 None:intergenic 35.0%
ATTTCAACGACGCAATCAAA+GGG - Chr5:37578958-37578977 None:intergenic 35.0%
CAAAAAACTGGAGATCTTGA+AGG - Chr5:37580850-37580869 None:intergenic 35.0%
CCCAACCTTGTCAAAAAATT+AGG + Chr5:37581073-37581092 MsG0580026446.01.T01:intron 35.0%
CCTGCATCAAAATAAGCATA+AGG - Chr5:37580244-37580263 None:intergenic 35.0%
GAACAAGCTGAAAGATATGA+AGG + Chr5:37578448-37578467 MsG0580026446.01.T01:CDS 35.0%
GAGATCAGAGAAAAACTCAA+AGG - Chr5:37578347-37578366 None:intergenic 35.0%
GATTATCGCTATCTTCGTTA+TGG + Chr5:37579648-37579667 MsG0580026446.01.T01:intron 35.0%
GGCAAAGAAGAAGAAGAAAT+GGG - Chr5:37578323-37578342 None:intergenic 35.0%
GGCATCCAGATTAAAAATCT+TGG - Chr5:37580906-37580925 None:intergenic 35.0%
GGTTGAATGTATGAAGAAAG+TGG + Chr5:37579271-37579290 MsG0580026446.01.T01:CDS 35.0%
GTAGGACTTAATCATGAAAC+GGG - Chr5:37579820-37579839 None:intergenic 35.0%
GTATATATTGTTGGGTAGGT+TGG + Chr5:37580950-37580969 MsG0580026446.01.T01:intron 35.0%
GTGATGTTATAGACCCAAAT+TGG + Chr5:37579093-37579112 MsG0580026446.01.T01:intron 35.0%
TCCAATGACTCATTCATAGT+AGG - Chr5:37579838-37579857 None:intergenic 35.0%
TCCTACTATGAATGAGTCAT+TGG + Chr5:37579834-37579853 MsG0580026446.01.T01:intron 35.0%
TGATGCTTAGATTAGGAAAC+TGG + Chr5:37578818-37578837 MsG0580026446.01.T01:intron 35.0%
TTAATACTCTCTTACAGGTG+AGG + Chr5:37581275-37581294 MsG0580026446.01.T01:intron 35.0%
TTGGGTCTATAACATCACTT+TGG - Chr5:37579091-37579110 None:intergenic 35.0%
! ATGGTGGTGATAAAACTTAC+AGG + Chr5:37580626-37580645 MsG0580026446.01.T01:intron 35.0%
! CACGTAATTTTTACCGTATC+AGG + Chr5:37579132-37579151 MsG0580026446.01.T01:intron 35.0%
! CAGAATATCACCACAGATTT+TGG - Chr5:37579486-37579505 None:intergenic 35.0%
! CGTAATTTTTACCGTATCAG+GGG + Chr5:37579134-37579153 MsG0580026446.01.T01:intron 35.0%
! CGTTTTTATATCCAACTGAG+AGG - Chr5:37579337-37579356 None:intergenic 35.0%
! CTAATGATGGGAATTATGCT+TGG + Chr5:37579049-37579068 MsG0580026446.01.T01:intron 35.0%
! CTCTGGAAACAATATGACTA+TGG - Chr5:37581151-37581170 None:intergenic 35.0%
! TCCTACTAAAGAGGTTCTAA+AGG + Chr5:37581252-37581271 MsG0580026446.01.T01:intron 35.0%
! TGGTGGTGATAAAACTTACA+GGG + Chr5:37580627-37580646 MsG0580026446.01.T01:intron 35.0%
! TTTTATATCCAACTGAGAGG+AGG - Chr5:37579334-37579353 None:intergenic 35.0%
!! AATAATGGACTGGCCAATTT+GGG - Chr5:37579109-37579128 None:intergenic 35.0%
!! ACCTTTAGAACCTCTTTAGT+AGG - Chr5:37581256-37581275 None:intergenic 35.0%
!! TAATAATGGACTGGCCAATT+TGG - Chr5:37579110-37579129 None:intergenic 35.0%
!! TTGCATATTTGTTATCCACC+TGG + Chr5:37579784-37579803 MsG0580026446.01.T01:intron 35.0%
!! TTTGGCTTCTTCAGCTTTTA+TGG - Chr5:37581304-37581323 None:intergenic 35.0%
!!! CCTTATGCTTATTTTGATGC+AGG + Chr5:37580241-37580260 MsG0580026446.01.T01:intron 35.0%
!!! CTTATTTTGATGCAGGAAAG+GGG + Chr5:37580248-37580267 MsG0580026446.01.T01:intron 35.0%
!!! GCTTATTTTGATGCAGGAAA+GGG + Chr5:37580247-37580266 MsG0580026446.01.T01:intron 35.0%
!!! TGCTTATTTTGATGCAGGAA+AGG + Chr5:37580246-37580265 MsG0580026446.01.T01:intron 35.0%
AAAGCTTGGCCAAGTAAACT+TGG - Chr5:37578426-37578445 None:intergenic 40.0%
AAGCTTGGCCAAGTAAACTT+GGG - Chr5:37578425-37578444 None:intergenic 40.0%
ATTCAAATCCTTTCCGACTG+TGG + Chr5:37579619-37579638 MsG0580026446.01.T01:intron 40.0%
CATAGAATCTGTATGACTGG+TGG + Chr5:37579737-37579756 MsG0580026446.01.T01:intron 40.0%
CGAAGATAGCGATAATCTGA+TGG - Chr5:37579645-37579664 None:intergenic 40.0%
CGATTCTCTCATACTTTGCA+TGG + Chr5:37580571-37580590 MsG0580026446.01.T01:intron 40.0%
CTGAAACCCTATAACTTGAG+CGG - Chr5:37579877-37579896 None:intergenic 40.0%
GAATCGATTGCTTACCTTTC+AGG - Chr5:37580557-37580576 None:intergenic 40.0%
GACAATTATTGACCAGCATC+TGG + Chr5:37579505-37579524 MsG0580026446.01.T01:CDS 40.0%
GATCAAGAGTTACTGCCAAA+AGG + Chr5:37579445-37579464 MsG0580026446.01.T01:CDS 40.0%
GATTACTCTTGCGGTGATTA+GGG - Chr5:37581030-37581049 None:intergenic 40.0%
GCCTGAGGTATGTATAAGAT+TGG + Chr5:37581332-37581351 MsG0580026446.01.T01:CDS 40.0%
GGACTACGAAATATGGAAAC+TGG + Chr5:37580078-37580097 MsG0580026446.01.T01:intron 40.0%
TAAGAAACTGTGCCTGCTAT+TGG + Chr5:37581108-37581127 MsG0580026446.01.T01:intron 40.0%
TAGAACTGCTCCTACTAAAG+AGG + Chr5:37581243-37581262 MsG0580026446.01.T01:intron 40.0%
TATGTCCTCAATTGAGCAGA+AGG + Chr5:37579388-37579407 MsG0580026446.01.T01:CDS 40.0%
TCACTAGAAGAAACTCACTC+TGG - Chr5:37581168-37581187 None:intergenic 40.0%
TCTTGAACTCAGCAAGATAC+CGG - Chr5:37580281-37580300 None:intergenic 40.0%
TGATTACTCTTGCGGTGATT+AGG - Chr5:37581031-37581050 None:intergenic 40.0%
TGATTAGGGACAAGTCAACT+TGG - Chr5:37581016-37581035 None:intergenic 40.0%
TTGAACTAACTGTGGAAGAG+AGG + Chr5:37579306-37579325 MsG0580026446.01.T01:CDS 40.0%
TTGGCATTCCATATCCTAGT+GGG + Chr5:37580969-37580988 MsG0580026446.01.T01:intron 40.0%
! AAGTCAACTTGGTGGACAAT+GGG - Chr5:37581005-37581024 None:intergenic 40.0%
! CAAAAGCTTGTTTGGCCAAA+TGG - Chr5:37580657-37580676 None:intergenic 40.0%
! GTTCTTGCTGATGCATTGAT+TGG + Chr5:37578710-37578729 MsG0580026446.01.T01:intron 40.0%
! TTTTTGACAAGGTTGGGGTA+AGG - Chr5:37581070-37581089 None:intergenic 40.0%
AAGATCAGTGTTTGCAGTGG+CGG - Chr5:37580462-37580481 None:intergenic 45.0%
AGTTGAGTGCAAGTCCAAGA+CGG - Chr5:37580502-37580521 None:intergenic 45.0%
CATTTGTCCCCACTAGGATA+TGG - Chr5:37580980-37580999 None:intergenic 45.0%
CGAGTGGATGATTACTCTTG+CGG - Chr5:37581039-37581058 None:intergenic 45.0%
CTTGAGTGAAGAGTCGTACA+AGG + Chr5:37580702-37580721 MsG0580026446.01.T01:CDS 45.0%
CTTGTACGACTCTTCACTCA+AGG - Chr5:37580704-37580723 None:intergenic 45.0%
GACTGACCAAGAGAGAAAAG+AGG + Chr5:37580299-37580318 MsG0580026446.01.T01:CDS 45.0%
GAGAGAGACCCAAGTTTACT+TGG + Chr5:37578414-37578433 MsG0580026446.01.T01:CDS 45.0%
GAGGAACTCTCCAAAATCTG+TGG + Chr5:37579473-37579492 MsG0580026446.01.T01:CDS 45.0%
GAGTTACTGCCAAAAGGTTG+AGG + Chr5:37579451-37579470 MsG0580026446.01.T01:CDS 45.0%
GATAATCTGATGGCCACAGT+CGG - Chr5:37579635-37579654 None:intergenic 45.0%
GCAGGAAAGGGGATTATTTC+CGG + Chr5:37580259-37580278 MsG0580026446.01.T01:intron 45.0%
GGGTAAGGATACAAATCGAG+TGG - Chr5:37581055-37581074 None:intergenic 45.0%
GTTGGCATTCCATATCCTAG+TGG + Chr5:37580968-37580987 MsG0580026446.01.T01:intron 45.0%
TATACATACCTCAGGCTCAG+CGG - Chr5:37581328-37581347 None:intergenic 45.0%
TCAACACATCCAATCCGTCT+TGG + Chr5:37580485-37580504 MsG0580026446.01.T01:CDS 45.0%
TGGAAGATCAGTGTTTGCAG+TGG - Chr5:37580465-37580484 None:intergenic 45.0%
TGGCATTCCATATCCTAGTG+GGG + Chr5:37580970-37580989 MsG0580026446.01.T01:intron 45.0%
TTACTGCCAAAAGGTTGAGG+AGG + Chr5:37579454-37579473 MsG0580026446.01.T01:CDS 45.0%
TTAGGGACAAGTCAACTTGG+TGG - Chr5:37581013-37581032 None:intergenic 45.0%
! AGAGTTCCTCCTCAACCTTT+TGG - Chr5:37579463-37579482 None:intergenic 45.0%
! CAAGTCAACTTGGTGGACAA+TGG - Chr5:37581006-37581025 None:intergenic 45.0%
! CGCCTCATCAAAAGCTTGTT+TGG - Chr5:37580665-37580684 None:intergenic 45.0%
! GAAAACATTAGCTTCTGCCG+AGG - Chr5:37579543-37579562 None:intergenic 45.0%
! GGCCAAACAAGCTTTTGATG+AGG + Chr5:37580660-37580679 MsG0580026446.01.T01:CDS 45.0%
! TTCAGCTTGTTCGGAAAGCT+TGG - Chr5:37578440-37578459 None:intergenic 45.0%
!! AGACGGATTGGATGTGTTGA+TGG - Chr5:37580485-37580504 None:intergenic 45.0%
!! TTTCTGGCTCACACGTACTT+TGG + Chr5:37580201-37580220 MsG0580026446.01.T01:intron 45.0%
!!! TAATTTTGTTATTTTTTAAT+GGG + Chr5:37578480-37578499 MsG0580026446.01.T01:intron 5.0%
!!! TTAATTTTGTTATTTTTTAA+TGG + Chr5:37578479-37578498 MsG0580026446.01.T01:intron 5.0%
!!! TTATTTTATTTTAATTTTGA+AGG + Chr5:37578685-37578704 MsG0580026446.01.T01:intron 5.0%
AACTTACAGGGCCTGCCATT+TGG + Chr5:37580639-37580658 MsG0580026446.01.T01:intron 50.0%
AATCAGAGGTCCAGAGAGTC+AGG - Chr5:37580762-37580781 None:intergenic 50.0%
AGTGCAAGTCCAAGACGGAT+TGG - Chr5:37580497-37580516 None:intergenic 50.0%
ATACATACCTCAGGCTCAGC+GGG - Chr5:37581327-37581346 None:intergenic 50.0%
CTCCTCCTTCTGCTCAATTG+AGG - Chr5:37579396-37579415 None:intergenic 50.0%
GAGCAGAAGGAGGAGTCTAA+GGG + Chr5:37579401-37579420 MsG0580026446.01.T01:CDS 50.0%
GCAGTCACTGAAAGGATACG+AGG + Chr5:37580329-37580348 MsG0580026446.01.T01:CDS 50.0%
GGTCTCTCTCTCTTTCTCAG+CGG - Chr5:37578404-37578423 None:intergenic 50.0%
GTCCTCAATTGAGCAGAAGG+AGG + Chr5:37579391-37579410 MsG0580026446.01.T01:CDS 50.0%
TATCCCTTACCTCCATCCTC+TGG - Chr5:37580787-37580806 None:intergenic 50.0%
TCCATCCTCTGGCAAATCAG+AGG - Chr5:37580776-37580795 None:intergenic 50.0%
TGAGAGACAACCTGACTCTC+TGG + Chr5:37580749-37580768 MsG0580026446.01.T01:CDS 50.0%
TGAGCAGAAGGAGGAGTCTA+AGG + Chr5:37579400-37579419 MsG0580026446.01.T01:CDS 50.0%
TGATGAGGCGATTGCAGAGT+TGG + Chr5:37580675-37580694 MsG0580026446.01.T01:CDS 50.0%
TTGCCAGAGGATGGAGGTAA+GGG + Chr5:37580781-37580800 MsG0580026446.01.T01:intron 50.0%
TTGGTGCACGAAGAGCTTCA+TGG + Chr5:37579360-37579379 MsG0580026446.01.T01:CDS 50.0%
TTTGCCAGAGGATGGAGGTA+AGG + Chr5:37580780-37580799 MsG0580026446.01.T01:intron 50.0%
! AACATTAGCTTCTGCCGAGG+TGG - Chr5:37579540-37579559 None:intergenic 50.0%
! ACCTCTGATTTGCCAGAGGA+TGG + Chr5:37580772-37580791 MsG0580026446.01.T01:CDS 50.0%
! AGCTTGTTTGGCCAAATGGC+AGG - Chr5:37580653-37580672 None:intergenic 50.0%
! CAGCAGCCTCTTTTCTCTCT+TGG - Chr5:37580308-37580327 None:intergenic 50.0%
! TCTGATTTGCCAGAGGATGG+AGG + Chr5:37580775-37580794 MsG0580026446.01.T01:CDS 50.0%
GAAACGGGTGCTCATCTACC+AGG - Chr5:37579805-37579824 None:intergenic 55.0%
GAGAGGAACCTCCTCTCAGT+TGG + Chr5:37579323-37579342 MsG0580026446.01.T01:CDS 55.0%
GCTGCTGAGCAGTCACTGAA+AGG + Chr5:37580321-37580340 MsG0580026446.01.T01:CDS 55.0%
TCTGATGGCCACAGTCGGAA+AGG - Chr5:37579630-37579649 None:intergenic 55.0%
TGGAAGCAGGAACCAGATGC+TGG - Chr5:37579520-37579539 None:intergenic 55.0%
! CTGGACCTCTGATTTGCCAG+AGG + Chr5:37580768-37580787 MsG0580026446.01.T01:CDS 55.0%
! TCTGGTTCCTGCTTCCACCT+CGG + Chr5:37579523-37579542 MsG0580026446.01.T01:CDS 55.0%
!! TGGGAGCATTTGTCCCCACT+AGG - Chr5:37580986-37581005 None:intergenic 55.0%
ACGGGTGCTCATCTACCAGG+TGG - Chr5:37579802-37579821 None:intergenic 60.0%
! TACCTCAGGCTCAGCGGGTT+TGG - Chr5:37581322-37581341 None:intergenic 60.0%
AGCCAAACCCGCTGAGCCTG+AGG + Chr5:37581317-37581336 MsG0580026446.01.T01:CDS 65.0%
GCTTCTGCCGAGGTGGAAGC+AGG - Chr5:37579533-37579552 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 37578311 37581425 37578311 ID=MsG0580026446.01;Name=MsG0580026446.01
Chr5 mRNA 37578311 37581425 37578311 ID=MsG0580026446.01.T01;Parent=MsG0580026446.01;Name=MsG0580026446.01.T01;_AED=0.38;_eAED=0.43;_QI=86|1|0.83|1|0.8|0.66|6|0|286
Chr5 exon 37578311 37578469 37578311 ID=MsG0580026446.01.T01:exon:22054;Parent=MsG0580026446.01.T01
Chr5 exon 37579267 37579573 37579267 ID=MsG0580026446.01.T01:exon:22055;Parent=MsG0580026446.01.T01
Chr5 exon 37580263 37580350 37580263 ID=MsG0580026446.01.T01:exon:22056;Parent=MsG0580026446.01.T01
Chr5 exon 37580452 37580561 37580452 ID=MsG0580026446.01.T01:exon:22057;Parent=MsG0580026446.01.T01
Chr5 exon 37580648 37580796 37580648 ID=MsG0580026446.01.T01:exon:22058;Parent=MsG0580026446.01.T01
Chr5 exon 37581292 37581425 37581292 ID=MsG0580026446.01.T01:exon:22059;Parent=MsG0580026446.01.T01
Chr5 five_prime_UTR 37578311 37578396 37578311 ID=MsG0580026446.01.T01:five_prime_utr;Parent=MsG0580026446.01.T01
Chr5 CDS 37578397 37578469 37578397 ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01
Chr5 CDS 37579267 37579573 37579267 ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01
Chr5 CDS 37580263 37580350 37580263 ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01
Chr5 CDS 37580452 37580561 37580452 ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01
Chr5 CDS 37580648 37580796 37580648 ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01
Chr5 CDS 37581292 37581425 37581292 ID=MsG0580026446.01.T01:cds;Parent=MsG0580026446.01.T01
Gene Sequence

>MsG0580026446.01.T01

ATGTCCGCTGAGAAAGAGAGAGAGACCCAAGTTTACTTGGCCAAGCTTTCCGAACAAGCTGAAAGATATGAAGAAATGGTTGAATGTATGAAGAAAGTGGCAAAACTTGATGTTGAACTAACTGTGGAAGAGAGGAACCTCCTCTCAGTTGGATATAAAAACGTCATTGGTGCACGAAGAGCTTCATGGCGCATTATGTCCTCAATTGAGCAGAAGGAGGAGTCTAAGGGTAATGAACACAATGTTAAAATGATCAAGAGTTACTGCCAAAAGGTTGAGGAGGAACTCTCCAAAATCTGTGGTGATATTCTGACAATTATTGACCAGCATCTGGTTCCTGCTTCCACCTCGGCAGAAGCTAATGTTTTCTATCATAAGATGAAAGGGGATTATTTCCGGTATCTTGCTGAGTTCAAGACTGACCAAGAGAGAAAAGAGGCTGCTGAGCAGTCACTGAAAGGATACGAGGCTGCTTCCGCCACTGCAAACACTGATCTTCCATCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCTGTCTTTTATTATGAGATTATGAACTCTCCTGAAAGGGCCTGCCATTTGGCCAAACAAGCTTTTGATGAGGCGATTGCAGAGTTGGATACCTTGAGTGAAGAGTCGTACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTGACTCTCTGGACCTCTGATTTGCCAGAGGATGGAGGTGAGGAGACCATAAAAGCTGAAGAAGCCAAACCCGCTGAGCCTGAGGTATGTATAAGATTGGTTTCGGCTATATTTACATTTGTTTGTTTTCTGAAGTACTATGTATGCGAAGCCATAGTTATAGATCTATAG

Protein sequence

>MsG0580026446.01.T01

MSAEKERETQVYLAKLSEQAERYEEMVECMKKVAKLDVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNEHNVKMIKSYCQKVEEELSKICGDILTIIDQHLVPASTSAEANVFYHKMKGDYFRYLAEFKTDQERKEAAEQSLKGYEAASATANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEETIKAEEAKPAEPEVCIRLVSAIFTFVCFLKYYVCEAIVIDL*