AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023602.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023602.01.T01 MTR_8g096820 94.545 110 6 0 1 110 1 110 5.58e-72 223
MsG0480023602.01.T01 MTR_8g096820 74.766 107 17 2 211 307 96 202 7.99e-43 148
MsG0480023602.01.T01 MTR_1g022405 43.478 69 39 0 239 307 120 188 7.67e-13 67.8
MsG0480023602.01.T01 MTR_3g112020 43.478 69 39 0 239 307 119 187 1.70e-12 67.0
MsG0480023602.01.T01 MTR_5g020850 43.284 67 38 0 239 305 120 186 2.96e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023602.01.T01 AT5G63510 37.762 286 89 8 31 305 19 226 1.26e-43 150
MsG0480023602.01.T01 AT3G48680 60.000 110 42 1 3 110 4 113 5.07e-38 135
MsG0480023602.01.T01 AT3G48680 86.111 72 10 0 234 305 132 203 3.97e-36 130
MsG0480023602.01.T01 AT5G63510 71.111 90 15 1 32 110 20 109 4.81e-37 133
MsG0480023602.01.T01 AT5G63510 87.500 72 9 0 234 305 128 199 2.40e-36 131
MsG0480023602.01.T01 AT1G19580 46.269 67 36 0 239 305 120 186 1.62e-12 67.0
MsG0480023602.01.T01 AT5G66510 42.308 78 43 1 230 307 113 188 6.38e-12 65.1
MsG0480023602.01.T01 AT1G47260 40.580 69 41 0 239 307 120 188 6.79e-12 65.1
MsG0480023602.01.T01 AT5G66510 42.308 78 43 1 230 307 124 199 6.80e-12 65.1

Find 85 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATGGAGTATGCGGTTCT+AGG 0.252743 4:+87520086 None:intergenic
ATACATATGCTAAGAGTAAT+AGG 0.252962 4:+87519528 None:intergenic
ATCGAGCCAGAGGTCATTAT+TGG 0.270806 4:-87515642 MsG0480023602.01.T01:CDS
GTATGCATTCTTCTGCAAAA+AGG 0.293122 4:-87515735 MsG0480023602.01.T01:CDS
CGCTGGTCAAGTTCATGTTT+GGG 0.293136 4:-87519877 MsG0480023602.01.T01:CDS
TCGCTGGTCAAGTTCATGTT+TGG 0.306862 4:-87519878 MsG0480023602.01.T01:CDS
CATCACCGGATCGGGTGAAT+TGG 0.308512 4:-87519989 MsG0480023602.01.T01:CDS
CGCTGTTTCTTCATGCCGCT+TGG 0.312773 4:-87519772 MsG0480023602.01.T01:CDS
TCGAGAGGTATGTGACTATT+GGG 0.332114 4:-87515692 MsG0480023602.01.T01:CDS
ATGTATAAATACTAGGATTT+GGG 0.334312 4:-87519586 MsG0480023602.01.T01:intron
CATTCCATCCGGTGAACTTT+GGG 0.346047 4:-87515535 MsG0480023602.01.T01:CDS
CCGGATGGAATGATCCTTCC+TGG 0.357824 4:+87515546 None:intergenic
TTGTGCGTGATGCTTTGTTA+TGG 0.360343 4:+87520070 None:intergenic
ATCGAGAGGTATGTGACTAT+TGG 0.363480 4:-87515693 MsG0480023602.01.T01:CDS
CGATAGTGCAGGATCTTAAC+AGG 0.372381 4:+87515661 None:intergenic
TTCTGTTGCAAAAGCGCGTT+CGG 0.384026 4:+87520031 None:intergenic
CAAAGTCCTCACAAACTTGC+TGG 0.385761 4:+87515504 None:intergenic
TTTGGGATGGTGCTTCTGTT+TGG 0.394146 4:-87519860 MsG0480023602.01.T01:CDS
TCATTCCATCCGGTGAACTT+TGG 0.397159 4:-87515536 MsG0480023602.01.T01:CDS
AAAGATCTCAAGAGTAAAGT+TGG 0.402910 4:+87515819 None:intergenic
ATGCGGTTCTAGGGCTTTGT+TGG 0.411815 4:+87520096 None:intergenic
AATTTAAGAGAAAGATATAA+TGG 0.427642 4:+87517536 None:intergenic
GCCGCTTGGTCTTCTCCTAC+AGG 0.443345 4:-87519758 MsG0480023602.01.T01:intron
ATCACCGGATCGGGTGAATT+GGG 0.444045 4:-87519988 MsG0480023602.01.T01:CDS
GATGGTGCTTCTGTTTGGCC+TGG 0.458679 4:-87519855 MsG0480023602.01.T01:CDS
GCAGGATCTTAACAGGCTAT+AGG 0.461030 4:+87515668 None:intergenic
ACACACTCAATTCTTGAAGC+TGG 0.465246 4:-87515582 MsG0480023602.01.T01:CDS
TATTACTCCATCACCGGATC+GGG 0.470199 4:-87519997 MsG0480023602.01.T01:CDS
TGACCAGCGAGAACCACATT+AGG 0.477831 4:+87519891 None:intergenic
TTATGGAGTATGCGGTTCTA+GGG 0.480579 4:+87520087 None:intergenic
CTCTCGATTGAAGTCTCAGC+TGG 0.481721 4:+87515708 None:intergenic
TCGAGCCAGAGGTCATTATT+GGG 0.484978 4:-87515641 MsG0480023602.01.T01:CDS
AATACTTTATATTAGTGTGC+TGG 0.485217 4:-87517652 MsG0480023602.01.T01:intron
TACATATGCTAAGAGTAATA+GGG 0.486554 4:+87519529 None:intergenic
ATCGGAGAGGTTTATTGTTG+TGG 0.487636 4:+87517582 None:intergenic
TAATCCCAATTCACCCGATC+CGG 0.490619 4:+87519984 None:intergenic
TGCTGCCCAATAATGACCTC+TGG 0.493950 4:+87515636 None:intergenic
TTCGGAAGCCACTGACCCAA+TGG 0.512785 4:+87519939 None:intergenic
CAATTCACCCGATCCGGTGA+TGG 0.515623 4:+87519990 None:intergenic
GCACCTAATGTGGTTCTCGC+TGG 0.515982 4:-87519894 MsG0480023602.01.T01:CDS
CCTCATGGAAGGTTCTATAG+TGG 0.516544 4:-87515607 MsG0480023602.01.T01:CDS
CACACTCAATTCTTGAAGCT+GGG 0.520187 4:-87515581 MsG0480023602.01.T01:CDS
TAAGCATCAACAGCTATCTT+CGG 0.524311 4:+87519921 None:intergenic
CTATTACTCCATCACCGGAT+CGG 0.535138 4:-87519998 MsG0480023602.01.T01:CDS
GACCTCTGGCTCGATAGTGC+AGG 0.537220 4:+87515650 None:intergenic
AATGTGGTGGAGCTAGGAAA+TGG 0.537683 4:+87520172 None:intergenic
TCGGAAGCCACTGACCCAAT+GGG 0.538002 4:+87519940 None:intergenic
TGGCCTGGTTGTGTTCTTCG+TGG 0.540218 4:-87519840 MsG0480023602.01.T01:CDS
TGGGCAGCATTCCATCCTCA+TGG 0.542081 4:-87515622 MsG0480023602.01.T01:CDS
TATAGAACCTTCCATGAGGA+TGG 0.545483 4:+87515611 None:intergenic
CCATCCGGTGAACTTTGGGC+AGG 0.548069 4:-87515531 MsG0480023602.01.T01:CDS
ACAGAGGAAGATAATCCCAT+TGG 0.551861 4:-87519955 MsG0480023602.01.T01:CDS
CAGAGGAAGATAATCCCATT+GGG 0.563728 4:-87519954 MsG0480023602.01.T01:CDS
ACTTTATATTAGTGTGCTGG+TGG 0.564070 4:-87517649 MsG0480023602.01.T01:intron
AGATAATCCCATTGGGTCAG+TGG 0.566753 4:-87519947 MsG0480023602.01.T01:CDS
TCACCACGAAGAACACAACC+AGG 0.574612 4:+87519837 None:intergenic
CCAGGAAGGATCATTCCATC+CGG 0.575893 4:-87515546 MsG0480023602.01.T01:CDS
AATGACAATGTGGTGGAGCT+AGG 0.577322 4:+87520166 None:intergenic
GGTCAAGTTCATGTTTGGGA+TGG 0.578896 4:-87519873 MsG0480023602.01.T01:CDS
GATCTGAATAAGATTAGTGT+TGG 0.581880 4:-87519816 MsG0480023602.01.T01:CDS
GAAATCTATTACTCCATCAC+CGG 0.585979 4:-87520003 MsG0480023602.01.T01:CDS
TGCAAAAGACGCTGTGGTGA+CGG 0.590965 4:-87517513 MsG0480023602.01.T01:intron
ATTACCTGCCCAAAGTTCAC+CGG 0.593632 4:+87515527 None:intergenic
TGCTTACGTGGCACCTAATG+TGG 0.594957 4:-87519904 MsG0480023602.01.T01:CDS
CGATTGAAGTCTCAGCTGGA+AGG 0.598226 4:+87515712 None:intergenic
CAGCATTCCATCCTCATGGA+AGG 0.605878 4:-87515618 MsG0480023602.01.T01:CDS
GGAGCTAGGAAATGGAAGAG+TGG 0.606166 4:+87520180 None:intergenic
GGTCAGTAGTTCCACCAGGA+AGG 0.611863 4:-87515560 MsG0480023602.01.T01:CDS
CGTTCGGATGAAGCTAGTTG+CGG 0.617624 4:+87520047 None:intergenic
ATTGGGATTATAGAGGACAG+AGG 0.617723 4:-87519971 MsG0480023602.01.T01:CDS
GGTAATCCAGCAAGTTTGTG+AGG 0.621185 4:-87515510 None:intergenic
GATAGCTGTTGATGCTTACG+TGG 0.629649 4:-87519916 MsG0480023602.01.T01:CDS
CCTGCCCAAAGTTCACCGGA+TGG 0.644025 4:+87515531 None:intergenic
CGAGAGGTATGTGACTATTG+GGG 0.644184 4:-87515691 MsG0480023602.01.T01:CDS
TAAATTTGCAAAAGACGCTG+TGG 0.646335 4:-87517519 MsG0480023602.01.T01:CDS
ATGCTTTGTTATGGAGTATG+CGG 0.647285 4:+87520079 None:intergenic
ATCCTGCACTATCGAGCCAG+AGG 0.649233 4:-87515652 MsG0480023602.01.T01:CDS
CGGGTGAATTGGGATTATAG+AGG 0.652482 4:-87519978 MsG0480023602.01.T01:CDS
GCTGGGTCAGTAGTTCCACC+AGG 0.658261 4:-87515564 MsG0480023602.01.T01:CDS
CAGCTGAGACTTCAATCGAG+AGG 0.666782 4:-87515707 MsG0480023602.01.T01:CDS
CGATTGTAATGACAATGTGG+TGG 0.691561 4:+87520159 None:intergenic
GATGGAATGATCCTTCCTGG+TGG 0.692913 4:+87515549 None:intergenic
ACCTGTAGGAGAAGACCAAG+CGG 0.712136 4:+87519757 None:intergenic
CCACTATAGAACCTTCCATG+AGG 0.731073 4:+87515607 None:intergenic
GAACGATTGTAATGACAATG+TGG 0.731461 4:+87520156 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATGTTTAAAACAAAT+TGG + Chr4:87519295-87519314 None:intergenic 10.0%
!! AAATTGTTAACATAAAAGTT+AGG + Chr4:87517958-87517977 None:intergenic 15.0%
!! AATTGTTAACATAAAAGTTA+GGG + Chr4:87517957-87517976 None:intergenic 15.0%
!! AATTTAAGAGAAAGATATAA+TGG + Chr4:87518169-87518188 None:intergenic 15.0%
!! ATCAAAATATACAATCAAAA+TGG - Chr4:87516904-87516923 MsG0480023602.01.T01:intron 15.0%
!! TAGAAAATGAAAATAGAAAA+TGG - Chr4:87519115-87519134 MsG0480023602.01.T01:intron 15.0%
!! TAGATGATTAATATATATGA+TGG + Chr4:87516356-87516375 None:intergenic 15.0%
!! TCAAAATATACAATCAAAAT+GGG - Chr4:87516905-87516924 MsG0480023602.01.T01:intron 15.0%
!! TCTTGAATGAAAATATTTAT+GGG - Chr4:87517060-87517079 MsG0480023602.01.T01:intron 15.0%
!!! AAATTTGTTTATATTGATTG+AGG - Chr4:87517024-87517043 MsG0480023602.01.T01:intron 15.0%
!!! ATGATGATATACATAAATTT+TGG - Chr4:87517583-87517602 MsG0480023602.01.T01:CDS 15.0%
!!! ATTTATTGTTCCATTTTTTT+GGG - Chr4:87516438-87516457 MsG0480023602.01.T01:intron 15.0%
!!! TATTTATTGTTCCATTTTTT+TGG - Chr4:87516437-87516456 MsG0480023602.01.T01:intron 15.0%
!!! TATTTTGATAAATGAAAACA+TGG + Chr4:87516893-87516912 None:intergenic 15.0%
!!! TGAAAGTATATTCTTAAAAA+AGG + Chr4:87518619-87518638 None:intergenic 15.0%
!!! TGATGATATACATAAATTTT+GGG - Chr4:87517584-87517603 MsG0480023602.01.T01:CDS 15.0%
!! AAGATTTGAAGAAATTATCT+AGG - Chr4:87516625-87516644 MsG0480023602.01.T01:intron 20.0%
!! AATGTATAAATACTAGGATT+TGG - Chr4:87516115-87516134 MsG0480023602.01.T01:intron 20.0%
!! ACATTCAAAGACAATATATA+GGG + Chr4:87519746-87519765 None:intergenic 20.0%
!! ATAAATGAAAACATGGTTAT+CGG + Chr4:87516886-87516905 None:intergenic 20.0%
!! ATGTATAAATACTAGGATTT+GGG - Chr4:87516116-87516135 MsG0480023602.01.T01:intron 20.0%
!! ATGTGAAATGTATAAATACT+AGG - Chr4:87516109-87516128 MsG0480023602.01.T01:intron 20.0%
!! CTAACTAAATAGAAATAGTT+GGG + Chr4:87518411-87518430 None:intergenic 20.0%
!! GATCATAAATGTTTACTTAA+AGG + Chr4:87518588-87518607 None:intergenic 20.0%
!! GTCTTGAATGAAAATATTTA+TGG - Chr4:87517059-87517078 MsG0480023602.01.T01:intron 20.0%
!! TAAATCCATAGACTATAATA+AGG - Chr4:87519356-87519375 MsG0480023602.01.T01:intron 20.0%
!! TAACTAAATAGAAATAGTTG+GGG + Chr4:87518410-87518429 None:intergenic 20.0%
!! TAATTCCTTATTATAGTCTA+TGG + Chr4:87519364-87519383 None:intergenic 20.0%
!! TACATTCAAAGACAATATAT+AGG + Chr4:87519747-87519766 None:intergenic 20.0%
!! TATGTACATATTAACTATGT+GGG + Chr4:87519406-87519425 None:intergenic 20.0%
!! TATTCTAAATAGAAATAGCT+AGG + Chr4:87518524-87518543 None:intergenic 20.0%
!! TCTAACTAAATAGAAATAGT+TGG + Chr4:87518412-87518431 None:intergenic 20.0%
!! TGTTCAGTTAAAAACTAAAA+GGG - Chr4:87517884-87517903 MsG0480023602.01.T01:intron 20.0%
!! TTATGTACATATTAACTATG+TGG + Chr4:87519407-87519426 None:intergenic 20.0%
!!! AACAACTCTTATTTTCATTT+CGG + Chr4:87517658-87517677 None:intergenic 20.0%
!!! AATTCATTTTTAAAGAGAGA+TGG - Chr4:87518899-87518918 MsG0480023602.01.T01:intron 20.0%
!!! AGGATTATGCTATTTAATTA+AGG + Chr4:87519576-87519595 None:intergenic 20.0%
!!! ATAATTTTTCATCATCATCA+TGG + Chr4:87516950-87516969 None:intergenic 20.0%
!!! ATTCATTTTTAAAGAGAGAT+GGG - Chr4:87518900-87518919 MsG0480023602.01.T01:intron 20.0%
!!! GTTTTCATAAAGAATGATAA+GGG - Chr4:87516549-87516568 MsG0480023602.01.T01:intron 20.0%
!!! TAAAGAATTTGTTTATGCTT+TGG - Chr4:87516015-87516034 MsG0480023602.01.T01:intron 20.0%
!!! TAATTTTTAAAAATCAAGGG+AGG + Chr4:87517188-87517207 None:intergenic 20.0%
!!! TGATGATGATGAAAAATTAT+TGG - Chr4:87516950-87516969 MsG0480023602.01.T01:intron 20.0%
!!! TGCTAAAGTTGATTTTAAAT+CGG + Chr4:87518141-87518160 None:intergenic 20.0%
!!! TGTTTTCATAAAGAATGATA+AGG - Chr4:87516548-87516567 MsG0480023602.01.T01:intron 20.0%
!!! TTTTAAAAACGAAAAAGACT+TGG - Chr4:87517097-87517116 MsG0480023602.01.T01:intron 20.0%
! AAAACAATCTCTCAAATAAG+GGG + Chr4:87516534-87516553 None:intergenic 25.0%
! AAAATCTGATGGTAAACATT+GGG - Chr4:87519655-87519674 MsG0480023602.01.T01:intron 25.0%
! AAGAATAACATGATTAACTC+TGG + Chr4:87518743-87518762 None:intergenic 25.0%
! AATACTTTATATTAGTGTGC+TGG - Chr4:87518050-87518069 MsG0480023602.01.T01:intron 25.0%
! ACTAACAATGTTACATGATA+GGG + Chr4:87517255-87517274 None:intergenic 25.0%
! ATACATATGCTAAGAGTAAT+AGG + Chr4:87516177-87516196 None:intergenic 25.0%
! CATTAAGCCATTAAATCAAA+TGG + Chr4:87517299-87517318 None:intergenic 25.0%
! CATTGTATGCATAAAAAAGA+TGG + Chr4:87516821-87516840 None:intergenic 25.0%
! CTTTGAATGTATATCAGTAT+TGG - Chr4:87519756-87519775 MsG0480023602.01.T01:intron 25.0%
! GAAAACAATCTCTCAAATAA+GGG + Chr4:87516535-87516554 None:intergenic 25.0%
! GTAAACAACTAAAAAGAAGT+TGG + Chr4:87519840-87519859 None:intergenic 25.0%
! GTGTTCAGTTAAAAACTAAA+AGG - Chr4:87517883-87517902 MsG0480023602.01.T01:intron 25.0%
! TACATATGCTAAGAGTAATA+GGG + Chr4:87516176-87516195 None:intergenic 25.0%
! TCAAAATGGGATATTTATCT+AGG - Chr4:87516918-87516937 MsG0480023602.01.T01:intron 25.0%
! TGAAAACAATCTCTCAAATA+AGG + Chr4:87516536-87516555 None:intergenic 25.0%
! TTAAAAACTAAAAGGGTTGT+TGG - Chr4:87517891-87517910 MsG0480023602.01.T01:intron 25.0%
! TTAATAAGTAGCATGTTCTA+AGG + Chr4:87516386-87516405 None:intergenic 25.0%
! TTAGGATGTGATATTCATTA+TGG - Chr4:87519782-87519801 MsG0480023602.01.T01:CDS 25.0%
! TTGTTAATTGAAAACCTAGA+AGG - Chr4:87517494-87517513 MsG0480023602.01.T01:intron 25.0%
!! AGATCTTTGAAAAATGAACA+TGG - Chr4:87519898-87519917 MsG0480023602.01.T01:CDS 25.0%
!! GATCTTTGAAAAATGAACAT+GGG - Chr4:87519899-87519918 MsG0480023602.01.T01:CDS 25.0%
!! GTATATCAGTATTGGAAATT+AGG - Chr4:87519764-87519783 MsG0480023602.01.T01:CDS 25.0%
!!! ACAACTCTTATTTTCATTTC+GGG + Chr4:87517657-87517676 None:intergenic 25.0%
!!! AGTTTCTTAGATCTGTTTTT+CGG - Chr4:87518450-87518469 MsG0480023602.01.T01:intron 25.0%
!!! CATCTTTTTTATGCATACAA+TGG - Chr4:87516819-87516838 MsG0480023602.01.T01:intron 25.0%
!!! TGTCTTATTTGAAAATCTGA+TGG - Chr4:87519644-87519663 MsG0480023602.01.T01:intron 25.0%
AAAATTCTTGTAGTGACCAA+GGG - Chr4:87517829-87517848 MsG0480023602.01.T01:intron 30.0%
AAACTAACAGTGATAGATGA+CGG - Chr4:87517853-87517872 MsG0480023602.01.T01:intron 30.0%
AAAGATCTCAAGAGTAAAGT+TGG + Chr4:87519886-87519905 None:intergenic 30.0%
AAATCTGATGGTAAACATTG+GGG - Chr4:87519656-87519675 MsG0480023602.01.T01:intron 30.0%
AAGCCATTAAATCAAATGGT+AGG + Chr4:87517295-87517314 None:intergenic 30.0%
AGCCATTAAATCAAATGGTA+GGG + Chr4:87517294-87517313 None:intergenic 30.0%
AGGAATTAGAAGATTTGTCT+CGG - Chr4:87519376-87519395 MsG0480023602.01.T01:intron 30.0%
CACTAACAATGTTACATGAT+AGG + Chr4:87517256-87517275 None:intergenic 30.0%
CTAACAATGTTACATGATAG+GGG + Chr4:87517254-87517273 None:intergenic 30.0%
GAAAATCTGATGGTAAACAT+TGG - Chr4:87519654-87519673 MsG0480023602.01.T01:intron 30.0%
GATCTGAATAAGATTAGTGT+TGG - Chr4:87515886-87515905 MsG0480023602.01.T01:intron 30.0%
GTGATGTAGAAATAAATTGC+TGG + Chr4:87518878-87518897 None:intergenic 30.0%
TAAAACAAAACCTAACCTGT+AGG + Chr4:87515962-87515981 None:intergenic 30.0%
TAAAATTCTTGTAGTGACCA+AGG - Chr4:87517828-87517847 MsG0480023602.01.T01:intron 30.0%
TAGACTCTTGAAATGAACAA+CGG - Chr4:87519038-87519057 MsG0480023602.01.T01:intron 30.0%
TCAAGCTAGAATTTCAATAG+AGG + Chr4:87517332-87517351 None:intergenic 30.0%
TTGAAGTCTTCCACTATTAT+TGG - Chr4:87519217-87519236 MsG0480023602.01.T01:intron 30.0%
TTGATTACTTCACTTTGTGA+AGG - Chr4:87518960-87518979 MsG0480023602.01.T01:intron 30.0%
! AAAAACGAAAAAGACTTGGT+TGG - Chr4:87517101-87517120 MsG0480023602.01.T01:intron 30.0%
! ACATAAATTTTGGGCTAAGT+AGG - Chr4:87517593-87517612 MsG0480023602.01.T01:CDS 30.0%
! TAGCTTTTGTAAATCACAGT+GGG + Chr4:87516216-87516235 None:intergenic 30.0%
!! AAGTTGATTTTAAATCGGAG+AGG + Chr4:87518136-87518155 None:intergenic 30.0%
!! ATCATTCGTTGTTTTGTTGA+TGG - Chr4:87515989-87516008 MsG0480023602.01.T01:intron 30.0%
!! GTTTTCGGTTCATTTAAGTT+TGG - Chr4:87518352-87518371 MsG0480023602.01.T01:intron 30.0%
!! TAGAGATTAGCTACCATTTT+TGG + Chr4:87517810-87517829 None:intergenic 30.0%
!! TCATTCGTTGTTTTGTTGAT+GGG - Chr4:87515990-87516009 MsG0480023602.01.T01:intron 30.0%
!! TTCTCTTGCTTTTACATCTT+GGG + Chr4:87517472-87517491 None:intergenic 30.0%
!!! TTGGTTTTGTTCTAATGTTC+AGG - Chr4:87515905-87515924 MsG0480023602.01.T01:intron 30.0%
AAATGCTTGAACACTACTTG+CGG - Chr4:87517553-87517572 MsG0480023602.01.T01:CDS 35.0%
AAATTCTTGTAGTGACCAAG+GGG - Chr4:87517830-87517849 MsG0480023602.01.T01:intron 35.0%
AACTAACAGTGATAGATGAC+GGG - Chr4:87517854-87517873 MsG0480023602.01.T01:intron 35.0%
ACCATGGTACTGTATTTGTT+GGG - Chr4:87518786-87518805 MsG0480023602.01.T01:intron 35.0%
ACTGTGCTACAAACATAGTT+CGG - Chr4:87516747-87516766 MsG0480023602.01.T01:intron 35.0%
ACTTTATATTAGTGTGCTGG+TGG - Chr4:87518053-87518072 MsG0480023602.01.T01:intron 35.0%
AGAAGGAGTGAATTGAAAGA+AGG - Chr4:87517511-87517530 MsG0480023602.01.T01:intron 35.0%
ATCCATAAACCCAATTCAAG+AGG - Chr4:87517359-87517378 MsG0480023602.01.T01:intron 35.0%
ATGTAACATTGTTAGTGCTC+TGG - Chr4:87517259-87517278 MsG0480023602.01.T01:intron 35.0%
ATTCCTCTTCCTCTTGAATT+GGG + Chr4:87517371-87517390 None:intergenic 35.0%
ATTTAAGAAGACCTCAAGGA+AGG - Chr4:87517918-87517937 MsG0480023602.01.T01:intron 35.0%
CAATATATAGGGAACTGCTT+TGG + Chr4:87519735-87519754 None:intergenic 35.0%
CAGTTCAGTTTCTCAAAGAT+CGG + Chr4:87516672-87516691 None:intergenic 35.0%
GAAATCTATTACTCCATCAC+CGG - Chr4:87515699-87515718 MsG0480023602.01.T01:CDS 35.0%
GAACGATTGTAATGACAATG+TGG + Chr4:87515549-87515568 None:intergenic 35.0%
GCAAAACAGACCAATAATAG+TGG + Chr4:87519230-87519249 None:intergenic 35.0%
GGATGTGATATTCATTATGG+AGG - Chr4:87519785-87519804 MsG0480023602.01.T01:CDS 35.0%
GTATGCATTCTTCTGCAAAA+AGG - Chr4:87519967-87519986 MsG0480023602.01.T01:CDS 35.0%
GTATTACTTCTCAGATGAGT+GGG - Chr4:87518982-87519001 MsG0480023602.01.T01:intron 35.0%
GTTCCAAACTCCCAAAAAAA+TGG + Chr4:87516451-87516470 None:intergenic 35.0%
TAAATTTGCAAAAGACGCTG+TGG - Chr4:87518183-87518202 MsG0480023602.01.T01:intron 35.0%
TAAGCATCAACAGCTATCTT+CGG + Chr4:87515784-87515803 None:intergenic 35.0%
TATTCCTCTTCCTCTTGAAT+TGG + Chr4:87517372-87517391 None:intergenic 35.0%
TCTTCAAATCTTCCTCATGT+TGG + Chr4:87516617-87516636 None:intergenic 35.0%
TCTTTCAATTCACTCCTTCT+AGG + Chr4:87517511-87517530 None:intergenic 35.0%
TTAAAGAGAGATGGGAAAGT+GGG - Chr4:87518908-87518927 MsG0480023602.01.T01:intron 35.0%
TTCCTCTTGAATTGGGTTTA+TGG + Chr4:87517364-87517383 None:intergenic 35.0%
TTTAAAGAGAGATGGGAAAG+TGG - Chr4:87518907-87518926 MsG0480023602.01.T01:intron 35.0%
! AAGCTTTATCCAACTAAGTG+GGG + Chr4:87519527-87519546 None:intergenic 35.0%
! AATTGCTGGCTATCTACAAA+AGG + Chr4:87518864-87518883 None:intergenic 35.0%
! ATGCTTTGTTATGGAGTATG+CGG + Chr4:87515626-87515645 None:intergenic 35.0%
! CAAGCTTTATCCAACTAAGT+GGG + Chr4:87519528-87519547 None:intergenic 35.0%
! CTCCCTACCATTTGATTTAA+TGG - Chr4:87517289-87517308 MsG0480023602.01.T01:intron 35.0%
! GACTTATTACAGGCACTTTT+TGG - Chr4:87519461-87519480 MsG0480023602.01.T01:intron 35.0%
! GTAGCTTTTGTAAATCACAG+TGG + Chr4:87516217-87516236 None:intergenic 35.0%
! TGCTATTTAAGAAGACCTCA+AGG - Chr4:87517914-87517933 MsG0480023602.01.T01:intron 35.0%
! TTGCATTCTAAGAGTATGCT+TGG + Chr4:87516302-87516321 None:intergenic 35.0%
!! AAAAAGTACTCTCTGATGAC+TGG - Chr4:87519425-87519444 MsG0480023602.01.T01:intron 35.0%
!! AACAGCTCTAAGAAACTGAA+CGG + Chr4:87518335-87518354 None:intergenic 35.0%
!! AAGCGTTGATAAGCAACTAA+AGG + Chr4:87518817-87518836 None:intergenic 35.0%
!! CAGTTTCTTAGAGCTGTTTT+CGG - Chr4:87518337-87518356 MsG0480023602.01.T01:intron 35.0%
!! CTTCTCTTGCTTTTACATCT+TGG + Chr4:87517473-87517492 None:intergenic 35.0%
!! CTTTGGAACATTGTGAAATG+TGG - Chr4:87516032-87516051 MsG0480023602.01.T01:intron 35.0%
!! TCTCTTGCTTTTACATCTTG+GGG + Chr4:87517471-87517490 None:intergenic 35.0%
!! TTAGATCTGTTTTTCGGTTC+AGG - Chr4:87518456-87518475 MsG0480023602.01.T01:intron 35.0%
!! TTTTTCGGTTCAGGTAAGTT+CGG - Chr4:87518465-87518484 MsG0480023602.01.T01:intron 35.0%
!!! GGAACTGTAGCTCATTTTTT+TGG + Chr4:87518314-87518333 None:intergenic 35.0%
!!! GTAGCTCATTTTTTTGGTTC+AGG + Chr4:87518308-87518327 None:intergenic 35.0%
!!! GTTCCATTTTTTTGGGAGTT+TGG - Chr4:87516445-87516464 MsG0480023602.01.T01:intron 35.0%
!!! TTTTTTGGGAGTTTGGAACT+TGG - Chr4:87516452-87516471 MsG0480023602.01.T01:intron 35.0%
AAACCCAATTCAAGAGGAAG+AGG - Chr4:87517365-87517384 MsG0480023602.01.T01:intron 40.0%
AAATTGGAAGAGAGACCAGA+AGG + Chr4:87519279-87519298 None:intergenic 40.0%
AATTACACTCACCTTCCTTG+AGG + Chr4:87517932-87517951 None:intergenic 40.0%
ACAATGTTACATGATAGGGG+AGG + Chr4:87517251-87517270 None:intergenic 40.0%
ACACACTCAATTCTTGAAGC+TGG - Chr4:87520120-87520139 MsG0480023602.01.T01:CDS 40.0%
ACAGAGGAAGATAATCCCAT+TGG - Chr4:87515747-87515766 MsG0480023602.01.T01:CDS 40.0%
AGCATAAACTAATCCGTCCA+AGG + Chr4:87518659-87518678 None:intergenic 40.0%
AGCTAGGTGTGTTCATAGTT+GGG + Chr4:87518508-87518527 None:intergenic 40.0%
AGGAGTGAATTGAAAGAAGG+TGG - Chr4:87517514-87517533 MsG0480023602.01.T01:CDS 40.0%
AGTGATTATGCAGGAAGCTA+AGG + Chr4:87516243-87516262 None:intergenic 40.0%
ATACGATCAAGCAGGTATCA+GGG + Chr4:87519697-87519716 None:intergenic 40.0%
ATCGGAGAGGTTTATTGTTG+TGG + Chr4:87518123-87518142 None:intergenic 40.0%
ATCTCATGATGCATTCTCCT+TGG - Chr4:87518639-87518658 MsG0480023602.01.T01:intron 40.0%
ATTGGGATTATAGAGGACAG+AGG - Chr4:87515731-87515750 MsG0480023602.01.T01:CDS 40.0%
CAACAAATACAGTACCATGG+TGG + Chr4:87518787-87518806 None:intergenic 40.0%
CACACTCAATTCTTGAAGCT+GGG - Chr4:87520121-87520140 MsG0480023602.01.T01:CDS 40.0%
CACCATGGTACTGTATTTGT+TGG - Chr4:87518785-87518804 MsG0480023602.01.T01:intron 40.0%
CAGAGGAAGATAATCCCATT+GGG - Chr4:87515748-87515767 MsG0480023602.01.T01:CDS 40.0%
CCACTTAGTTGGATAAAGCT+TGG - Chr4:87519526-87519545 MsG0480023602.01.T01:intron 40.0%
CGATTGTAATGACAATGTGG+TGG + Chr4:87515546-87515565 None:intergenic 40.0%
GCATATGTATGCCAGAATCA+CGG - Chr4:87516187-87516206 MsG0480023602.01.T01:intron 40.0%
GGTATTACTTCTCAGATGAG+TGG - Chr4:87518981-87519000 MsG0480023602.01.T01:intron 40.0%
GTTATAGAACCGAACTGACT+GGG + Chr4:87518269-87518288 None:intergenic 40.0%
TAAAGAGAGATGGGAAAGTG+GGG - Chr4:87518909-87518928 MsG0480023602.01.T01:intron 40.0%
TAGCTAGGTGTGTTCATAGT+TGG + Chr4:87518509-87518528 None:intergenic 40.0%
TATAGAACCTTCCATGAGGA+TGG + Chr4:87520094-87520113 None:intergenic 40.0%
TTATGGAGTATGCGGTTCTA+GGG + Chr4:87515618-87515637 None:intergenic 40.0%
TTGGAACTTGGAACATGGAA+GGG - Chr4:87516464-87516483 MsG0480023602.01.T01:intron 40.0%
TTTATCCAACTAAGTGGGGT+CGG + Chr4:87519523-87519542 None:intergenic 40.0%
! ATCGAGAGGTATGTGACTAT+TGG - Chr4:87520009-87520028 MsG0480023602.01.T01:CDS 40.0%
! CCAAGCTTTATCCAACTAAG+TGG + Chr4:87519529-87519548 None:intergenic 40.0%
! CCATGGTACTGTATTTGTTG+GGG - Chr4:87518787-87518806 MsG0480023602.01.T01:intron 40.0%
! GGTTCAGTTAGGACTTTTGA+AGG + Chr4:87516651-87516670 None:intergenic 40.0%
! TATCACTGTTAGTTTCCCCT+TGG + Chr4:87517848-87517867 None:intergenic 40.0%
! TCGAGAGGTATGTGACTATT+GGG - Chr4:87520010-87520029 MsG0480023602.01.T01:CDS 40.0%
! TCTCAAAGATCGGTTCAGTT+AGG + Chr4:87516662-87516681 None:intergenic 40.0%
! TTGTGCGTGATGCTTTGTTA+TGG + Chr4:87515635-87515654 None:intergenic 40.0%
! TTTGGAACTTGGAACATGGA+AGG - Chr4:87516463-87516482 MsG0480023602.01.T01:intron 40.0%
!! ACATGATTAACTCTGGAGTC+TGG + Chr4:87518736-87518755 None:intergenic 40.0%
!! TTTTGTTTGCCCAGTCAGTT+CGG - Chr4:87518257-87518276 MsG0480023602.01.T01:intron 40.0%
AACTTGGAACATGGAAGGGA+GGG - Chr4:87516468-87516487 MsG0480023602.01.T01:intron 45.0%
AGACTTGCATACGATCAAGC+AGG + Chr4:87519705-87519724 None:intergenic 45.0%
AGATAATCCCATTGGGTCAG+TGG - Chr4:87515755-87515774 MsG0480023602.01.T01:CDS 45.0%
AGCCTCATCTTGTAACCTTC+TGG - Chr4:87519261-87519280 MsG0480023602.01.T01:intron 45.0%
AGCTTCCTGCATAATCACTG+TGG - Chr4:87516244-87516263 MsG0480023602.01.T01:intron 45.0%
ATCGAGCCAGAGGTCATTAT+TGG - Chr4:87520060-87520079 MsG0480023602.01.T01:CDS 45.0%
ATGGTTATCGGCATGAAAGC+AGG + Chr4:87516874-87516893 None:intergenic 45.0%
ATTACCTGCCCAAAGTTCAC+CGG + Chr4:87520178-87520197 None:intergenic 45.0%
CAAGAGGAAGAGGAATACAG+AGG - Chr4:87517375-87517394 MsG0480023602.01.T01:intron 45.0%
CATAATCCTCCATTGCTGAG+AGG - Chr4:87519587-87519606 MsG0480023602.01.T01:intron 45.0%
CATACGATCAAGCAGGTATC+AGG + Chr4:87519698-87519717 None:intergenic 45.0%
CATGAAAGCAGGGAACTTTG+AGG + Chr4:87516863-87516882 None:intergenic 45.0%
CATGATGCATTCTCCTTGGA+CGG - Chr4:87518643-87518662 MsG0480023602.01.T01:intron 45.0%
CATTCCATCCGGTGAACTTT+GGG - Chr4:87520167-87520186 MsG0480023602.01.T01:five_prime_UTR 45.0%
CCACTATAGAACCTTCCATG+AGG + Chr4:87520098-87520117 None:intergenic 45.0%
CCCCAACAAATACAGTACCA+TGG + Chr4:87518790-87518809 None:intergenic 45.0%
CCTCATGGAAGGTTCTATAG+TGG - Chr4:87520095-87520114 MsG0480023602.01.T01:CDS 45.0%
CGATAGTGCAGGATCTTAAC+AGG + Chr4:87520044-87520063 None:intergenic 45.0%
CGCTGGTCAAGTTCATGTTT+GGG - Chr4:87515825-87515844 MsG0480023602.01.T01:CDS 45.0%
CGGGTGAATTGGGATTATAG+AGG - Chr4:87515724-87515743 MsG0480023602.01.T01:CDS 45.0%
CGTTCTCTCTCTCTCTCTAA+TGG - Chr4:87515564-87515583 MsG0480023602.01.T01:CDS 45.0%
CTATTACTCCATCACCGGAT+CGG - Chr4:87515704-87515723 MsG0480023602.01.T01:CDS 45.0%
GACCAGAAGGTTACAAGATG+AGG + Chr4:87519266-87519285 None:intergenic 45.0%
GAGTATGCTTGGTATCACTG+TGG + Chr4:87516291-87516310 None:intergenic 45.0%
GATAGCTGTTGATGCTTACG+TGG - Chr4:87515786-87515805 MsG0480023602.01.T01:CDS 45.0%
GCAGGATCTTAACAGGCTAT+AGG + Chr4:87520037-87520056 None:intergenic 45.0%
GCTTCCTGCATAATCACTGT+GGG - Chr4:87516245-87516264 MsG0480023602.01.T01:intron 45.0%
GGTCAAGTTCATGTTTGGGA+TGG - Chr4:87515829-87515848 MsG0480023602.01.T01:intron 45.0%
GGTTATAGAACCGAACTGAC+TGG + Chr4:87518270-87518289 None:intergenic 45.0%
GTTATGGAGTATGCGGTTCT+AGG + Chr4:87515619-87515638 None:intergenic 45.0%
TAATCCCAATTCACCCGATC+CGG + Chr4:87515721-87515740 None:intergenic 45.0%
TATTACTCCATCACCGGATC+GGG - Chr4:87515705-87515724 MsG0480023602.01.T01:CDS 45.0%
TCATTCCATCCGGTGAACTT+TGG - Chr4:87520166-87520185 MsG0480023602.01.T01:five_prime_UTR 45.0%
TCGAGCCAGAGGTCATTATT+GGG - Chr4:87520061-87520080 MsG0480023602.01.T01:CDS 45.0%
TCGCTGGTCAAGTTCATGTT+TGG - Chr4:87515824-87515843 MsG0480023602.01.T01:CDS 45.0%
TGATGGTAAACATTGGGGCA+AGG - Chr4:87519661-87519680 MsG0480023602.01.T01:intron 45.0%
TGGGCAAACAAAACAGCAAC+AGG + Chr4:87518250-87518269 None:intergenic 45.0%
TGGTTATCGGCATGAAAGCA+GGG + Chr4:87516873-87516892 None:intergenic 45.0%
TTCACCCACAGTGATTATGC+AGG + Chr4:87516252-87516271 None:intergenic 45.0%
! AATGACAATGTGGTGGAGCT+AGG + Chr4:87515539-87515558 None:intergenic 45.0%
! AATGTGGTGGAGCTAGGAAA+TGG + Chr4:87515533-87515552 None:intergenic 45.0%
! ATAGTTGGGGTGTTCACAGT+TGG + Chr4:87518397-87518416 None:intergenic 45.0%
! CAGGTAGTGGTAGCCAAAAA+TGG - Chr4:87517794-87517813 MsG0480023602.01.T01:intron 45.0%
! CGAGAGGTATGTGACTATTG+GGG - Chr4:87520011-87520030 MsG0480023602.01.T01:CDS 45.0%
! GAAGCACTCTGTTCTGTTGT+TGG - Chr4:87519166-87519185 MsG0480023602.01.T01:intron 45.0%
! GGAGTTTGGAACTTGGAACA+TGG - Chr4:87516459-87516478 MsG0480023602.01.T01:intron 45.0%
! GGTGGTGGTTGACTTATTAC+AGG - Chr4:87519451-87519470 MsG0480023602.01.T01:intron 45.0%
! TAGTTGGGGTGTTCACAGTT+GGG + Chr4:87518396-87518415 None:intergenic 45.0%
! TGGTCTGTTTTGCTTGCATG+AGG - Chr4:87519237-87519256 MsG0480023602.01.T01:intron 45.0%
! TTCTGTTGCAAAAGCGCGTT+CGG + Chr4:87515674-87515693 None:intergenic 45.0%
! TTGGTCTTCTCCTACAGGTT+AGG - Chr4:87515949-87515968 MsG0480023602.01.T01:intron 45.0%
! TTTGGGATGGTGCTTCTGTT+TGG - Chr4:87515842-87515861 MsG0480023602.01.T01:intron 45.0%
!! GAGGGTACTATACCAACATG+AGG - Chr4:87516602-87516621 MsG0480023602.01.T01:intron 45.0%
!! TAACAGTGATAGATGACGGG+AGG - Chr4:87517857-87517876 MsG0480023602.01.T01:intron 45.0%
!!! TGGAGGTGTTTTCTGTAGAG+TGG - Chr4:87519802-87519821 MsG0480023602.01.T01:CDS 45.0%
!!! TTTTTGGCTACCACTACCTG+CGG + Chr4:87517794-87517813 None:intergenic 45.0%
!!! AAATTATTATTTTAACTTTT+AGG - Chr4:87517148-87517167 MsG0480023602.01.T01:intron 5.0%
!!! AATTATTATTTTAACTTTTA+GGG - Chr4:87517149-87517168 MsG0480023602.01.T01:intron 5.0%
!!! ATAATAATTTTTAAAAATCA+AGG + Chr4:87517192-87517211 None:intergenic 5.0%
!!! TAATAATTTTTAAAAATCAA+GGG + Chr4:87517191-87517210 None:intergenic 5.0%
!!! TTATATATTTTTAATTATGA+GGG - Chr4:87516584-87516603 MsG0480023602.01.T01:intron 5.0%
!!! TTTATATATTTTTAATTATG+AGG - Chr4:87516583-87516602 MsG0480023602.01.T01:intron 5.0%
AACATGGAAGGGAGGGCTTT+GGG - Chr4:87516475-87516494 MsG0480023602.01.T01:intron 50.0%
AATCCTCCATTGCTGAGAGG+AGG - Chr4:87519590-87519609 MsG0480023602.01.T01:intron 50.0%
ACCTGTAGGAGAAGACCAAG+CGG + Chr4:87515948-87515967 None:intergenic 50.0%
AGGCGTGATGAGCGTAGTAT+GGG - Chr4:87517613-87517632 MsG0480023602.01.T01:CDS 50.0%
AGTATGGGCGATGAGGGAAA+CGG - Chr4:87517628-87517647 MsG0480023602.01.T01:CDS 50.0%
ATCACCGGATCGGGTGAATT+GGG - Chr4:87515714-87515733 MsG0480023602.01.T01:CDS 50.0%
ATCTCTTGATGCTGAGCCTC+TGG - Chr4:87518703-87518722 MsG0480023602.01.T01:intron 50.0%
CAGCATTCCATCCTCATGGA+AGG - Chr4:87520084-87520103 MsG0480023602.01.T01:CDS 50.0%
CAGCTGAGACTTCAATCGAG+AGG - Chr4:87519995-87520014 MsG0480023602.01.T01:CDS 50.0%
CATTGGGGCAAGGAAAGTAG+TGG - Chr4:87519671-87519690 MsG0480023602.01.T01:intron 50.0%
CCAGGAAGGATCATTCCATC+CGG - Chr4:87520156-87520175 MsG0480023602.01.T01:five_prime_UTR 50.0%
CGATTGAAGTCTCAGCTGGA+AGG + Chr4:87519993-87520012 None:intergenic 50.0%
CGTTCGGATGAAGCTAGTTG+CGG + Chr4:87515658-87515677 None:intergenic 50.0%
CTCTCGATTGAAGTCTCAGC+TGG + Chr4:87519997-87520016 None:intergenic 50.0%
CTGTGGGTGAATCGTGATTC+TGG - Chr4:87516261-87516280 MsG0480023602.01.T01:intron 50.0%
GAACTTGGAACATGGAAGGG+AGG - Chr4:87516467-87516486 MsG0480023602.01.T01:intron 50.0%
GAGTTAACTACCGCAGGTAG+TGG - Chr4:87517781-87517800 MsG0480023602.01.T01:intron 50.0%
GATGGAATGATCCTTCCTGG+TGG + Chr4:87520156-87520175 None:intergenic 50.0%
GGAGCTAGGAAATGGAAGAG+TGG + Chr4:87515525-87515544 None:intergenic 50.0%
GTACTCTCTGATGACTGGTG+TGG - Chr4:87519430-87519449 MsG0480023602.01.T01:intron 50.0%
GTGACAAACTGACGAGAGCT+TGG - Chr4:87518219-87518238 MsG0480023602.01.T01:intron 50.0%
TAGGCGTGATGAGCGTAGTA+TGG - Chr4:87517612-87517631 MsG0480023602.01.T01:CDS 50.0%
TCACCACGAAGAACACAACC+AGG + Chr4:87515868-87515887 None:intergenic 50.0%
TGACCAGCGAGAACCACATT+AGG + Chr4:87515814-87515833 None:intergenic 50.0%
TGCAAAAGACGCTGTGGTGA+CGG - Chr4:87518189-87518208 MsG0480023602.01.T01:intron 50.0%
TGCTGCCCAATAATGACCTC+TGG + Chr4:87520069-87520088 None:intergenic 50.0%
TGCTTACGTGGCACCTAATG+TGG - Chr4:87515798-87515817 MsG0480023602.01.T01:CDS 50.0%
TTCACACCTCCTCTCAGCAA+TGG + Chr4:87519599-87519618 None:intergenic 50.0%
!! ACCATGGTGGCTTCTAAAGC+AGG + Chr4:87518774-87518793 None:intergenic 50.0%
!! ATAGGGGAGGTGTTTGTCAC+AGG + Chr4:87517238-87517257 None:intergenic 50.0%
!! ATGCGGTTCTAGGGCTTTGT+TGG + Chr4:87515609-87515628 None:intergenic 50.0%
!! CCATGGTGGCTTCTAAAGCA+GGG + Chr4:87518773-87518792 None:intergenic 50.0%
!! TAGGGGAGGTGTTTGTCACA+GGG + Chr4:87517237-87517256 None:intergenic 50.0%
!!! TTTTTGGTTCAGGTGCGCTG+TGG + Chr4:87518298-87518317 None:intergenic 50.0%
ACACCTCCTCTCAGCAATGG+AGG + Chr4:87519596-87519615 None:intergenic 55.0%
ACAGTGGGTCACCGTGATTC+TGG + Chr4:87516201-87516220 None:intergenic 55.0%
ACATGGAAGGGAGGGCTTTG+GGG - Chr4:87516476-87516495 MsG0480023602.01.T01:intron 55.0%
AGCAGCGAGTTAACTACCGC+AGG - Chr4:87517775-87517794 MsG0480023602.01.T01:intron 55.0%
ATCCTGCACTATCGAGCCAG+AGG - Chr4:87520050-87520069 MsG0480023602.01.T01:CDS 55.0%
CAATTCACCCGATCCGGTGA+TGG + Chr4:87515715-87515734 None:intergenic 55.0%
CATCACCGGATCGGGTGAAT+TGG - Chr4:87515713-87515732 MsG0480023602.01.T01:CDS 55.0%
CCGGATGGAATGATCCTTCC+TGG + Chr4:87520159-87520178 None:intergenic 55.0%
CTCTCTGATGACTGGTGTGG+TGG - Chr4:87519433-87519452 MsG0480023602.01.T01:intron 55.0%
GAACATGGAAGGGAGGGCTT+TGG - Chr4:87516474-87516493 MsG0480023602.01.T01:intron 55.0%
GAGCGTAGTATGGGCGATGA+GGG - Chr4:87517622-87517641 MsG0480023602.01.T01:CDS 55.0%
GATGGTGCTTCTGTTTGGCC+TGG - Chr4:87515847-87515866 MsG0480023602.01.T01:intron 55.0%
GCACCTAATGTGGTTCTCGC+TGG - Chr4:87515808-87515827 MsG0480023602.01.T01:CDS 55.0%
GGAGTCTGGCATTCTACCAG+AGG + Chr4:87518722-87518741 None:intergenic 55.0%
GGTCAGTAGTTCCACCAGGA+AGG - Chr4:87520142-87520161 MsG0480023602.01.T01:five_prime_UTR 55.0%
GTATGGGCGATGAGGGAAAC+GGG - Chr4:87517629-87517648 MsG0480023602.01.T01:CDS 55.0%
TAGGGAACTGCTTTGGCTGC+TGG + Chr4:87519728-87519747 None:intergenic 55.0%
TCGGAAGCCACTGACCCAAT+GGG + Chr4:87515765-87515784 None:intergenic 55.0%
TCTGATGACTGGTGTGGTGG+TGG - Chr4:87519436-87519455 MsG0480023602.01.T01:intron 55.0%
TGAGCGTAGTATGGGCGATG+AGG - Chr4:87517621-87517640 MsG0480023602.01.T01:CDS 55.0%
TGGCCTGGTTGTGTTCTTCG+TGG - Chr4:87515862-87515881 MsG0480023602.01.T01:intron 55.0%
TGGGCAGCATTCCATCCTCA+TGG - Chr4:87520080-87520099 MsG0480023602.01.T01:CDS 55.0%
TTCAGGTGCGCTGTGGTTTC+AGG + Chr4:87518291-87518310 None:intergenic 55.0%
TTCGGAAGCCACTGACCCAA+TGG + Chr4:87515766-87515785 None:intergenic 55.0%
! CTTTGGGGGAAGGGATGAGA+GGG - Chr4:87516491-87516510 MsG0480023602.01.T01:intron 55.0%
!! CCCTGCTTTAGAAGCCACCA+TGG - Chr4:87518770-87518789 MsG0480023602.01.T01:intron 55.0%
!! CGCTGTTTCTTCATGCCGCT+TGG - Chr4:87515930-87515949 MsG0480023602.01.T01:intron 55.0%
!! GTGGCTTCTAAAGCAGGGAG+TGG + Chr4:87518768-87518787 None:intergenic 55.0%
CCATCCGGTGAACTTTGGGC+AGG - Chr4:87520171-87520190 MsG0480023602.01.T01:five_prime_UTR 60.0%
CCTGCCCAAAGTTCACCGGA+TGG + Chr4:87520174-87520193 None:intergenic 60.0%
GAGAGATGGGAAAGTGGGGC+TGG - Chr4:87518913-87518932 MsG0480023602.01.T01:intron 60.0%
GCTAGCCGACCCCACTTAGT+TGG - Chr4:87519515-87519534 MsG0480023602.01.T01:intron 60.0%
GCTGGGTCAGTAGTTCCACC+AGG - Chr4:87520138-87520157 MsG0480023602.01.T01:exon 60.0%
! CATGGAAGGGAGGGCTTTGG+GGG - Chr4:87516477-87516496 MsG0480023602.01.T01:intron 60.0%
! GACCTCTGGCTCGATAGTGC+AGG + Chr4:87520055-87520074 None:intergenic 60.0%
! GCCGCTTGGTCTTCTCCTAC+AGG - Chr4:87515944-87515963 MsG0480023602.01.T01:intron 60.0%
!! AAGGGAGGGCTTTGGGGGAA+GGG - Chr4:87516482-87516501 MsG0480023602.01.T01:intron 60.0%
!! GCTTTGGGGGAAGGGATGAG+AGG - Chr4:87516490-87516509 MsG0480023602.01.T01:intron 60.0%
!! GAAGGGAGGGCTTTGGGGGA+AGG - Chr4:87516481-87516500 MsG0480023602.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 87515512 87520212 87515512 ID=MsG0480023602.01;Name=MsG0480023602.01
Chr4 mRNA 87515512 87520212 87515512 ID=MsG0480023602.01.T01;Parent=MsG0480023602.01;Name=MsG0480023602.01.T01;_AED=0.49;_eAED=0.62;_QI=71|0|0.25|1|1|1|4|0|307
Chr4 exon 87515512 87515844 87515512 ID=MsG0480023602.01.T01:exon:6599;Parent=MsG0480023602.01.T01
Chr4 exon 87517514 87517659 87517514 ID=MsG0480023602.01.T01:exon:6598;Parent=MsG0480023602.01.T01
Chr4 exon 87519532 87519593 87519532 ID=MsG0480023602.01.T01:exon:6597;Parent=MsG0480023602.01.T01
Chr4 exon 87519759 87520212 87519759 ID=MsG0480023602.01.T01:exon:6596;Parent=MsG0480023602.01.T01
Chr4 five_prime_UTR 87520142 87520212 87520142 ID=MsG0480023602.01.T01:five_prime_utr;Parent=MsG0480023602.01.T01
Chr4 CDS 87519759 87520141 87519759 ID=MsG0480023602.01.T01:cds;Parent=MsG0480023602.01.T01
Chr4 CDS 87519532 87519593 87519532 ID=MsG0480023602.01.T01:cds;Parent=MsG0480023602.01.T01
Chr4 CDS 87517514 87517659 87517514 ID=MsG0480023602.01.T01:cds;Parent=MsG0480023602.01.T01
Chr4 CDS 87515512 87515844 87515512 ID=MsG0480023602.01.T01:cds;Parent=MsG0480023602.01.T01
Gene Sequence

>MsG0480023602.01.T01

ATGGCGAATCTAGCACGTTTTAACCAACAAAGCCCTAGAACCGCATACTCCATAACAAAGCATCACGCACAACCGCAACTAGCTTCATCCGAACGCGCTTTTGCAACAGAAGCTGCGAAATCTATTACTCCATCACCGGATCGGGTGAATTGGGATTATAGAGGACAGAGGAAGATAATCCCATTGGGTCAGTGGCTTCCGAAGATAGCTGTTGATGCTTACGTGGCACCTAATGTGGTTCTCGCTGGTCAAGTTCATGTTTGGGATGGTGCTTCTGTTTGGCCTGGTTGTGTTCTTCGTGGTGATCTGAATAAGATTAGTGTTGGTTTTGTTCTAATGTTCAGGAACGCTGTTTCTTCATGCCGCTTGGTCTTCTCCTACAGGATTTGGGAAATGTTGCTGTTCATAGTCTTGAATTGTATTGACCCTATTACTCTTAGCATATTGTGCTGGTGGAGTGTTCACTTATCGCAAAATGTGTACATGTCAAAGAAATTCTGCCACAACAATAAACCTCTCCGATTTAAAATCAACTTTAGCAAGCAGCCATTATATCTTTCTCTTAAATTTGCAAAAGACGCTGTGGTGACGTTTCCAACTTTACTCTTGAGATCTTTGAAAAATGAACATGGGTATGTGCTTAATTATGATTTATTTCAATGCATTACTTATTATTATGTATGCATTCTTCTGCAAAAAGGCCTTCCAGCTGAGACTTCAATCGAGAGGTATGTGACTATTGGGGCCTATAGCCTGTTAAGATCCTGCACTATCGAGCCAGAGGTCATTATTGGGCAGCATTCCATCCTCATGGAAGGTTCTATAGTGGAGACACACTCAATTCTTGAAGCTGGGTCAGTAGTTCCACCAGGAAGGATCATTCCATCCGGTGAACTTTGGGCAGGTAATCCAGCAAGTTTGTGA
Protein sequence

>MsG0480023602.01.T01

MANLARFNQQSPRTAYSITKHHAQPQLASSERAFATEAAKSITPSPDRVNWDYRGQRKIIPLGQWLPKIAVDAYVAPNVVLAGQVHVWDGASVWPGCVLRGDLNKISVGFVLMFRNAVSSCRLVFSYRIWEMLLFIVLNCIDPITLSILCWWSVHLSQNVYMSKKFCHNNKPLRFKINFSKQPLYLSLKFAKDAVVTFPTLLLRSLKNEHGYVLNYDLFQCITYYYVCILLQKGLPAETSIERYVTIGAYSLLRSCTIEPEVIIGQHSILMEGSIVETHSILEAGSVVPPGRIIPSGELWAGNPASL*