AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003792.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003792.01.T01 MTR_1g069575 93.704 270 13 1 25 290 12 281 1.06e-179 501
MsG0180003792.01.T01 MTR_4g084040 40.187 214 109 5 94 290 30 241 7.78e-43 150
MsG0180003792.01.T01 MTR_4g084040 40.376 213 108 5 95 290 1 211 1.48e-42 149
MsG0180003792.01.T01 MTR_4g084040 47.826 115 60 0 176 290 31 145 3.37e-31 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003792.01.T01 AT5G44000 71.429 231 56 3 69 290 44 273 4.72e-116 340
MsG0180003792.01.T01 AT4G19880 38.222 225 120 4 83 290 20 242 1.38e-41 146
MsG0180003792.01.T01 AT4G19880 38.222 225 120 4 83 290 20 242 3.91e-41 146
MsG0180003792.01.T01 AT4G19880 38.222 225 120 4 83 290 20 242 5.09e-41 146
MsG0180003792.01.T01 AT5G44990 38.776 196 101 4 108 286 11 204 1.86e-39 139
MsG0180003792.01.T01 AT5G44990 38.776 196 101 4 108 286 11 204 9.56e-39 139
MsG0180003792.01.T01 AT5G44990 38.776 196 101 4 108 286 11 204 9.56e-39 139
MsG0180003792.01.T01 AT5G45020 37.089 213 115 4 95 290 1 211 2.18e-37 135
MsG0180003792.01.T01 AT5G45020 37.089 213 115 4 95 290 1 211 2.18e-37 135
MsG0180003792.01.T01 AT5G44990 46.364 110 59 0 177 286 12 121 1.00e-28 111

Find 140 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTCTATCATATGCTTCT+TGG 0.200519 1:+68220030 None:intergenic
TCTTTCACCACCTGAATTAA+AGG 0.217062 1:-68220380 MsG0180003792.01.T01:CDS
TGAACCAGTATTTGTTAAAT+AGG 0.222094 1:-68219547 MsG0180003792.01.T01:three_prime_UTR
TTCATTACATACAACATCTT+TGG 0.252307 1:+68220468 None:intergenic
ATCTGCAATTCAACGTTTAT+AGG 0.259826 1:-68219473 MsG0180003792.01.T01:three_prime_UTR
TCAATCTTATCCTTTAATTC+AGG 0.265131 1:+68220370 None:intergenic
TACAAAGAAAGTGAAAATTT+TGG 0.270037 1:+68219385 None:intergenic
ATTACAAGTATCTGCAACTT+TGG 0.312973 1:+68219707 None:intergenic
GTTCTGTTACAAAACTTCTC+TGG 0.315841 1:-68220921 MsG0180003792.01.T01:CDS
ATTGCCTATTTAACAAATAC+TGG 0.329847 1:+68219543 None:intergenic
ATTCAAACGGGTCGGTAATA+CGG 0.330260 1:-68220614 MsG0180003792.01.T01:CDS
ATAATTCAATTGTTTAATTC+CGG 0.334525 1:-68220436 MsG0180003792.01.T01:CDS
TAATTCAATTGTTTAATTCC+GGG 0.335485 1:-68220435 MsG0180003792.01.T01:CDS
GAGCTGCCACGTGGAGTTCC+AGG 0.336140 1:+68220852 None:intergenic
TACACACCGTTGTTCACGTT+TGG 0.336302 1:+68220325 None:intergenic
TCTGAAGTTGAAGGCATAAT+TGG 0.346959 1:+68219621 None:intergenic
GACAAGGTGGTGTGAGGAAG+AGG 0.351548 1:+68221053 None:intergenic
ATACTCATATAACTTCTTCT+TGG 0.353135 1:+68219858 None:intergenic
TTGTTTAATTCCGGGTTAAA+CGG 0.357379 1:-68220427 MsG0180003792.01.T01:CDS
TCATGTAATTAGTCCGAGTT+TGG 0.362164 1:-68220590 MsG0180003792.01.T01:CDS
TCCCTGGATTGAGAGGAAAA+AGG 0.376331 1:+68219652 None:intergenic
CTGGGGTCGGTCCCTCCCAC+CGG 0.396579 1:-68220902 MsG0180003792.01.T01:CDS
TCCAGTGTCAGTTGCGTCGC+CGG 0.397459 1:-68220656 MsG0180003792.01.T01:CDS
AGACTTTAAAAGAAGTATAT+AGG 0.397864 1:-68220549 MsG0180003792.01.T01:CDS
TTCTGTTACAAAACTTCTCT+GGG 0.401395 1:-68220920 MsG0180003792.01.T01:CDS
GTCTGTTTACTACTTTGATT+CGG 0.402179 1:-68219915 MsG0180003792.01.T01:three_prime_UTR
CGCCGGGAATGGATGGGTCG+TGG 0.403839 1:-68220639 MsG0180003792.01.T01:CDS
CTACATGCGTCACATTTATC+AGG 0.404982 1:-68219821 MsG0180003792.01.T01:intron
GTTGCGTCGCCGGGAATGGA+TGG 0.406208 1:-68220646 MsG0180003792.01.T01:CDS
GTCAGTTGCGTCGCCGGGAA+TGG 0.413562 1:-68220650 MsG0180003792.01.T01:CDS
TTCAAACGGGTCGGTAATAC+GGG 0.417761 1:-68220613 MsG0180003792.01.T01:CDS
AAGATCCAACTCAGGGTTAC+GGG 0.418289 1:+68220399 None:intergenic
TGTTTAATTCCGGGTTAAAC+GGG 0.419709 1:-68220426 MsG0180003792.01.T01:CDS
CGACAACCACTTTCCGCAAC+CGG 0.426378 1:-68221020 MsG0180003792.01.T01:CDS
ATTTCATGCTCTGAAGTTGA+AGG 0.430518 1:+68219612 None:intergenic
GCTTCAAAATTCCGATTCTC+TGG 0.443348 1:-68220778 MsG0180003792.01.T01:CDS
CTGGTTCAGTTGATGATGAT+AGG 0.444961 1:+68219562 None:intergenic
AGAACGGATGAGGGAACTTC+CGG 0.445710 1:+68220990 None:intergenic
CACTAAATGTTATCATGTAC+TGG 0.447151 1:-68219421 MsG0180003792.01.T01:three_prime_UTR
AATTAGTCCGAGTTTGGATA+AGG 0.450978 1:-68220584 MsG0180003792.01.T01:CDS
CTGAGAAGTGGTGGGTATGA+TGG 0.455128 1:-68220526 MsG0180003792.01.T01:CDS
TTCTTTGCAGACCTCATGGC+AGG 0.455813 1:-68219590 MsG0180003792.01.T01:three_prime_UTR
GGTGAGCCCACGGGCATGGC+AGG 0.455919 1:+68220722 None:intergenic
TTCCGGTGAGTCTCCGGTTG+CGG 0.460175 1:+68221007 None:intergenic
TCCCACGACCCATCCATTCC+CGG 0.466688 1:+68220637 None:intergenic
ACGTGAACAACGGTGTGTAT+AGG 0.467210 1:-68220321 MsG0180003792.01.T01:intron
TCACAACCGTCCGCACCGCC+TGG 0.467210 1:-68220870 MsG0180003792.01.T01:CDS
TGTTGTCAAGGGACATAGTC+AGG 0.469351 1:+68220965 None:intergenic
CTCGCTCCCTCCGATCCCAC+TGG 0.477182 1:-68220817 MsG0180003792.01.T01:CDS
ATCTTATCCTTTAATTCAGG+TGG 0.486788 1:+68220373 None:intergenic
CCCGGCGACGCAACTGACAC+TGG 0.487032 1:+68220655 None:intergenic
GGGAACTTCCGGTGAGTCTC+CGG 0.493773 1:+68221001 None:intergenic
AAAGATCCAACTCAGGGTTA+CGG 0.495880 1:+68220398 None:intergenic
GTATATAGGCTGAGAAGTGG+TGG 0.499430 1:-68220535 MsG0180003792.01.T01:CDS
GTACGGTGAGCCCACGGGCA+TGG 0.499751 1:+68220718 None:intergenic
CGTTGGCCTGCCATGCCCGT+GGG 0.505206 1:-68220728 MsG0180003792.01.T01:CDS
TAGTCAGGCGAGAACGGATG+AGG 0.506765 1:+68220980 None:intergenic
GGAATATCCGCCAGTGGGAT+CGG 0.508614 1:+68220807 None:intergenic
TGGTTCAGTTGATGATGATA+GGG 0.511787 1:+68219563 None:intergenic
TGAACAAATCTTTCACCCGT+TGG 0.514637 1:-68219521 MsG0180003792.01.T01:three_prime_UTR
TGGGTCGTGGGAATTCAAAC+GGG 0.519151 1:-68220626 MsG0180003792.01.T01:CDS
ATGGGTCGTGGGAATTCAAA+CGG 0.519328 1:-68220627 MsG0180003792.01.T01:CDS
CCAGTGTCAGTTGCGTCGCC+GGG 0.521031 1:-68220655 MsG0180003792.01.T01:CDS
ACGTTGGCCTGCCATGCCCG+TGG 0.522921 1:-68220729 MsG0180003792.01.T01:CDS
AGTCCGCGCACTCAAAGGCT+TGG 0.523773 1:-68220689 MsG0180003792.01.T01:CDS
TAATTCCGGGTTAAACGGGT+TGG 0.524230 1:-68220422 MsG0180003792.01.T01:CDS
CTGATAAATGTGACGCATGT+AGG 0.524638 1:+68219822 None:intergenic
CTCATAGTCCGCGCACTCAA+AGG 0.525005 1:-68220694 MsG0180003792.01.T01:CDS
GCCGGGAATGGATGGGTCGT+GGG 0.525533 1:-68220638 MsG0180003792.01.T01:CDS
TGGGGTCGGTCCCTCCCACC+GGG 0.530372 1:-68220901 MsG0180003792.01.T01:CDS
TTCCGCAACCGGAGACTCAC+CGG 0.534590 1:-68221009 MsG0180003792.01.T01:CDS
GAAATTCTTTGCAGACCTCA+TGG 0.534960 1:-68219594 MsG0180003792.01.T01:three_prime_UTR
TGAATTAAAGGATAAGATTG+AGG 0.535509 1:-68220368 MsG0180003792.01.T01:CDS
TCGGTGGTGGACCAGAGAAT+CGG 0.535907 1:+68220767 None:intergenic
CGGTTGCGGAAAGTGGTTGT+CGG 0.536348 1:+68221021 None:intergenic
GACGAGAAGACCCGGTGGGA+GGG 0.537088 1:+68220891 None:intergenic
AAGAGGAATTGTTGTTGTCA+AGG 0.537371 1:+68220953 None:intergenic
TTGTACACTAGATGAGTTGG+AGG 0.544163 1:-68219995 MsG0180003792.01.T01:exon
GGGACATAGTCAGGCGAGAA+CGG 0.547841 1:+68220974 None:intergenic
TCAAATTCTCGCTATTTGTG+TGG 0.552267 1:-68219964 MsG0180003792.01.T01:three_prime_UTR
TTGCGTCGCCGGGAATGGAT+GGG 0.554498 1:-68220645 MsG0180003792.01.T01:CDS
GAGTCTCCGGTTGCGGAAAG+TGG 0.555872 1:+68221014 None:intergenic
AACAGAACTTAGTAGGGAAG+AGG 0.556724 1:+68220936 None:intergenic
AGAGGAATTGTTGTTGTCAA+GGG 0.560702 1:+68220954 None:intergenic
ACATACAGAACAGAACCAAC+GGG 0.563191 1:+68219506 None:intergenic
CTTCCAAGCCTTTGAGTGCG+CGG 0.563636 1:+68220686 None:intergenic
ACGGGCCAACCCGTTTAACC+CGG 0.566457 1:+68220417 None:intergenic
TTACAAAACTTCTCTGGGGT+CGG 0.567115 1:-68220915 MsG0180003792.01.T01:CDS
AGGTGGAGACCACTCGGTGG+TGG 0.569761 1:+68220754 None:intergenic
TATATAGGCTGAGAAGTGGT+GGG 0.570077 1:-68220534 MsG0180003792.01.T01:CDS
GGAGTTCCAGGCGGTGCGGA+CGG 0.570604 1:+68220864 None:intergenic
GTTGGCCCGTAACCCTGAGT+TGG 0.571773 1:-68220404 MsG0180003792.01.T01:CDS
GAGTCTTTGTTCCACAACAT+TGG 0.572372 1:+68220490 None:intergenic
CTAATGCTCCCTGGATTGAG+AGG 0.577711 1:+68219645 None:intergenic
ATGAGAGTACGGTGAGCCCA+CGG 0.579375 1:+68220712 None:intergenic
CCATTCGCCTTATCCAAACT+CGG 0.588222 1:+68220577 None:intergenic
CCGAGTTTGGATAAGGCGAA+TGG 0.588244 1:-68220577 MsG0180003792.01.T01:CDS
GATCCACTGTGCCAATGTTG+TGG 0.590586 1:-68220501 MsG0180003792.01.T01:CDS
GGTGGTGAAAGATCCAACTC+AGG 0.593310 1:+68220391 None:intergenic
CGACGCAACTGACACTGGAA+CGG 0.595413 1:+68220660 None:intergenic
TGAGAGTACGGTGAGCCCAC+GGG 0.597158 1:+68220713 None:intergenic
GAAGTATATAGGCTGAGAAG+TGG 0.600922 1:-68220538 MsG0180003792.01.T01:CDS
TATCCGCCAGTGGGATCGGA+GGG 0.602717 1:+68220811 None:intergenic
ATAATTGGTCTAATGCTCCC+TGG 0.605043 1:+68219636 None:intergenic
AAATGTTATCATGTACTGGC+TGG 0.607690 1:-68219417 MsG0180003792.01.T01:three_prime_UTR
ACGGTTGTGACGAGAAGACC+CGG 0.609002 1:+68220883 None:intergenic
TACATACAGAACAGAACCAA+CGG 0.609532 1:+68219505 None:intergenic
ACGTAGAGGTGGAGACCACT+CGG 0.613297 1:+68220748 None:intergenic
ACGCATGTAGGCATGTAGAT+TGG 0.613504 1:+68219834 None:intergenic
ATGGCAGGCCAACGTAGAGG+TGG 0.617427 1:+68220737 None:intergenic
TAAAGGATAAGATTGAGGAA+TGG 0.619218 1:-68220363 MsG0180003792.01.T01:CDS
TGACGAGAAGACCCGGTGGG+AGG 0.619484 1:+68220890 None:intergenic
ACAAGGTGGTGTGAGGAAGA+GGG 0.626050 1:+68221054 None:intergenic
GTGCGCGGACTATGAGAGTA+CGG 0.628813 1:+68220701 None:intergenic
GCTCCCTCCGATCCCACTGG+CGG 0.629484 1:-68220814 MsG0180003792.01.T01:CDS
TCTTTGCAGACCTCATGGCA+GGG 0.630240 1:-68219589 MsG0180003792.01.T01:three_prime_UTR
ATATCCGCCAGTGGGATCGG+AGG 0.630429 1:+68220810 None:intergenic
AGTCAGGCGAGAACGGATGA+GGG 0.643628 1:+68220981 None:intergenic
GGCATGGCAGGCCAACGTAG+AGG 0.643969 1:+68220734 None:intergenic
TTCTCTGGTCCACCACCGAG+TGG 0.644068 1:-68220763 MsG0180003792.01.T01:CDS
TTGCGGAAAGTGGTTGTCGG+AGG 0.645779 1:+68221024 None:intergenic
AATGACGACAAGGTGGTGTG+AGG 0.649943 1:+68221047 None:intergenic
TCGTGGGAATTCAAACGGGT+CGG 0.657856 1:-68220622 MsG0180003792.01.T01:CDS
GGTCTGGAATATCCGCCAGT+GGG 0.659584 1:+68220802 None:intergenic
GTTCCACAACATTGGCACAG+TGG 0.661542 1:+68220498 None:intergenic
GGGTCTGGAATATCCGCCAG+TGG 0.663373 1:+68220801 None:intergenic
GTGGTGAAAGATCCAACTCA+GGG 0.663800 1:+68220392 None:intergenic
TTGTCGGAGGAATGACGACA+AGG 0.674643 1:+68221037 None:intergenic
ACGTGGAGTTCCAGGCGGTG+CGG 0.675896 1:+68220860 None:intergenic
AGTGGTCTCCACCTCTACGT+TGG 0.677828 1:-68220745 MsG0180003792.01.T01:CDS
AGACATCATGAGCTGCCACG+TGG 0.697920 1:+68220843 None:intergenic
GATAGGGATTCCCTGCCATG+AGG 0.701385 1:+68219579 None:intergenic
CTGCCACGTGGAGTTCCAGG+CGG 0.705558 1:+68220855 None:intergenic
ATATATCCAAACGTGAACAA+CGG 0.707057 1:-68220331 MsG0180003792.01.T01:CDS
TTGTGACGAGAAGACCCGGT+GGG 0.717453 1:+68220887 None:intergenic
TCTGTTACAAAACTTCTCTG+GGG 0.722297 1:-68220919 MsG0180003792.01.T01:CDS
TCGGAGGAATGACGACAAGG+TGG 0.725756 1:+68221040 None:intergenic
GCACCGCCTGGAACTCCACG+TGG 0.732654 1:-68220858 MsG0180003792.01.T01:CDS
GTTGTGACGAGAAGACCCGG+TGG 0.740905 1:+68220886 None:intergenic
TAGAGGTGGAGACCACTCGG+TGG 0.771659 1:+68220751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTCAATTGTTTAATTC+CGG - Chr1:68220065-68220084 MsG0180003792.01.T01:intron 15.0%
!!! TTGTAATTTTCAAGAAATTA+TGG - Chr1:68220810-68220829 MsG0180003792.01.T01:CDS 15.0%
!! TAATTCAATTGTTTAATTCC+GGG - Chr1:68220066-68220085 MsG0180003792.01.T01:intron 20.0%
!!! AATTTTCAAGAAATTATGGA+TGG - Chr1:68220814-68220833 MsG0180003792.01.T01:CDS 20.0%
!!! AGACTTTAAAAGAAGTATAT+AGG - Chr1:68219952-68219971 MsG0180003792.01.T01:three_prime_UTR 20.0%
! ATACTCATATAACTTCTTCT+TGG + Chr1:68220646-68220665 None:intergenic 25.0%
! ATTGCCTATTTAACAAATAC+TGG + Chr1:68220961-68220980 None:intergenic 25.0%
! TCAATCTTATCCTTTAATTC+AGG + Chr1:68220134-68220153 None:intergenic 25.0%
! TGAATTAAAGGATAAGATTG+AGG - Chr1:68220133-68220152 MsG0180003792.01.T01:intron 25.0%
! TTCATTACATACAACATCTT+TGG + Chr1:68220036-68220055 None:intergenic 25.0%
!! TGAACCAGTATTTGTTAAAT+AGG - Chr1:68220954-68220973 MsG0180003792.01.T01:CDS 25.0%
!! TGAAGATATCGAATATTTTG+AGG + Chr1:68219400-68219419 None:intergenic 25.0%
!! TTTTGTAACAGAACTTAGTA+GGG + Chr1:68219574-68219593 None:intergenic 25.0%
!!! GAAGATATCGAATATTTTGA+GGG + Chr1:68219399-68219418 None:intergenic 25.0%
ATATATCCAAACGTGAACAA+CGG - Chr1:68220170-68220189 MsG0180003792.01.T01:intron 30.0%
ATCTGCAATTCAACGTTTAT+AGG - Chr1:68221028-68221047 MsG0180003792.01.T01:CDS 30.0%
ATCTTATCCTTTAATTCAGG+TGG + Chr1:68220131-68220150 None:intergenic 30.0%
ATTACAAGTATCTGCAACTT+TGG + Chr1:68220797-68220816 None:intergenic 30.0%
CAATGAGTTTGAGAAAATCA+CGG - Chr1:68220232-68220251 MsG0180003792.01.T01:intron 30.0%
CACTAAATGTTATCATGTAC+TGG - Chr1:68221080-68221099 MsG0180003792.01.T01:CDS 30.0%
GCTTTGCTCAAAAAATGTTT+AGG - Chr1:68220708-68220727 MsG0180003792.01.T01:CDS 30.0%
GTCTGTTTACTACTTTGATT+CGG - Chr1:68220586-68220605 MsG0180003792.01.T01:CDS 30.0%
TAAAGGATAAGATTGAGGAA+TGG - Chr1:68220138-68220157 MsG0180003792.01.T01:intron 30.0%
TTCTGTTACAAAACTTCTCT+GGG - Chr1:68219581-68219600 MsG0180003792.01.T01:three_prime_UTR 30.0%
TTGTTTAATTCCGGGTTAAA+CGG - Chr1:68220074-68220093 MsG0180003792.01.T01:intron 30.0%
! GTTTTGTAACAGAACTTAGT+AGG + Chr1:68219575-68219594 None:intergenic 30.0%
AATTAGTCCGAGTTTGGATA+AGG - Chr1:68219917-68219936 MsG0180003792.01.T01:three_prime_UTR 35.0%
ATATTATGTGTTTCCTGCCT+TGG - Chr1:68220764-68220783 MsG0180003792.01.T01:CDS 35.0%
GTTCTGTTACAAAACTTCTC+TGG - Chr1:68219580-68219599 MsG0180003792.01.T01:three_prime_UTR 35.0%
TACATACAGAACAGAACCAA+CGG + Chr1:68220999-68221018 None:intergenic 35.0%
TCAAATTCTCGCTATTTGTG+TGG - Chr1:68220537-68220556 MsG0180003792.01.T01:CDS 35.0%
TCATGTAATTAGTCCGAGTT+TGG - Chr1:68219911-68219930 MsG0180003792.01.T01:three_prime_UTR 35.0%
TCTGTTACAAAACTTCTCTG+GGG - Chr1:68219582-68219601 MsG0180003792.01.T01:three_prime_UTR 35.0%
TCTTTCACCACCTGAATTAA+AGG - Chr1:68220121-68220140 MsG0180003792.01.T01:intron 35.0%
TGAATTGCAATTTGCATTGC+AGG - Chr1:68220431-68220450 MsG0180003792.01.T01:CDS 35.0%
TGTTTAATTCCGGGTTAAAC+GGG - Chr1:68220075-68220094 MsG0180003792.01.T01:intron 35.0%
! AAATGTTATCATGTACTGGC+TGG - Chr1:68221084-68221103 MsG0180003792.01.T01:CDS 35.0%
! AAGAGGAATTGTTGTTGTCA+AGG + Chr1:68219551-68219570 None:intergenic 35.0%
! AGAGGAATTGTTGTTGTCAA+GGG + Chr1:68219550-68219569 None:intergenic 35.0%
! GTTTTGTACACTAGATGAGT+TGG - Chr1:68220503-68220522 MsG0180003792.01.T01:CDS 35.0%
! TCTGAAGTTGAAGGCATAAT+TGG + Chr1:68220883-68220902 None:intergenic 35.0%
!! AGAGAATCGGAATTTTGAAG+CGG + Chr1:68219724-68219743 None:intergenic 35.0%
!! ATTTCATGCTCTGAAGTTGA+AGG + Chr1:68220892-68220911 None:intergenic 35.0%
!! CTGAAGAAGTATTCAAAGTG+AGG + Chr1:68220367-68220386 None:intergenic 35.0%
!! TGGTTCAGTTGATGATGATA+GGG + Chr1:68220941-68220960 None:intergenic 35.0%
AAAGATCCAACTCAGGGTTA+CGG + Chr1:68220106-68220125 None:intergenic 40.0%
AACAGAACTTAGTAGGGAAG+AGG + Chr1:68219568-68219587 None:intergenic 40.0%
ACATACAGAACAGAACCAAC+GGG + Chr1:68220998-68221017 None:intergenic 40.0%
ATTCAAACGGGTCGGTAATA+CGG - Chr1:68219887-68219906 MsG0180003792.01.T01:three_prime_UTR 40.0%
CTACATGCGTCACATTTATC+AGG - Chr1:68220680-68220699 MsG0180003792.01.T01:CDS 40.0%
CTGATAAATGTGACGCATGT+AGG + Chr1:68220682-68220701 None:intergenic 40.0%
CTGCTCTATCATATGCTTCT+TGG + Chr1:68220474-68220493 None:intergenic 40.0%
GAAATTCTTTGCAGACCTCA+TGG - Chr1:68220907-68220926 MsG0180003792.01.T01:CDS 40.0%
GAAGTATATAGGCTGAGAAG+TGG - Chr1:68219963-68219982 MsG0180003792.01.T01:three_prime_UTR 40.0%
GAGTCTTTGTTCCACAACAT+TGG + Chr1:68220014-68220033 None:intergenic 40.0%
GCTTCAAAATTCCGATTCTC+TGG - Chr1:68219723-68219742 MsG0180003792.01.T01:intron 40.0%
TATATAGGCTGAGAAGTGGT+GGG - Chr1:68219967-68219986 MsG0180003792.01.T01:three_prime_UTR 40.0%
TATCATTGTAGCGCAAGTCA+TGG - Chr1:68220281-68220300 MsG0180003792.01.T01:intron 40.0%
TGAACAAATCTTTCACCCGT+TGG - Chr1:68220980-68220999 MsG0180003792.01.T01:CDS 40.0%
! ATAATTGGTCTAATGCTCCC+TGG + Chr1:68220868-68220887 None:intergenic 40.0%
! GAAAATCACGGTGACACTTT+TGG - Chr1:68220244-68220263 MsG0180003792.01.T01:intron 40.0%
! TTGTACACTAGATGAGTTGG+AGG - Chr1:68220506-68220525 MsG0180003792.01.T01:CDS 40.0%
!! CTGGTTCAGTTGATGATGAT+AGG + Chr1:68220942-68220961 None:intergenic 40.0%
!! TTACAAAACTTCTCTGGGGT+CGG - Chr1:68219586-68219605 MsG0180003792.01.T01:three_prime_UTR 40.0%
!!! GAGAATCGGAATTTTGAAGC+GGG + Chr1:68219723-68219742 None:intergenic 40.0%
AAGATCCAACTCAGGGTTAC+GGG + Chr1:68220105-68220124 None:intergenic 45.0%
ACGCATGTAGGCATGTAGAT+TGG + Chr1:68220670-68220689 None:intergenic 45.0%
ACGTGAACAACGGTGTGTAT+AGG - Chr1:68220180-68220199 MsG0180003792.01.T01:intron 45.0%
ATGGGTCGTGGGAATTCAAA+CGG - Chr1:68219874-68219893 MsG0180003792.01.T01:three_prime_UTR 45.0%
CCATTCGCCTTATCCAAACT+CGG + Chr1:68219927-68219946 None:intergenic 45.0%
CCCTGGATTGAGAGGAAAAA+GGG + Chr1:68220851-68220870 None:intergenic 45.0%
GCAATTTGCATTGCAGGTGT+GGG - Chr1:68220437-68220456 MsG0180003792.01.T01:CDS 45.0%
GTATATAGGCTGAGAAGTGG+TGG - Chr1:68219966-68219985 MsG0180003792.01.T01:three_prime_UTR 45.0%
GTGGTGAAAGATCCAACTCA+GGG + Chr1:68220112-68220131 None:intergenic 45.0%
TAATTCCGGGTTAAACGGGT+TGG - Chr1:68220079-68220098 MsG0180003792.01.T01:intron 45.0%
TACACACCGTTGTTCACGTT+TGG + Chr1:68220179-68220198 None:intergenic 45.0%
TCCCTGGATTGAGAGGAAAA+AGG + Chr1:68220852-68220871 None:intergenic 45.0%
TGCAATTTGCATTGCAGGTG+TGG - Chr1:68220436-68220455 MsG0180003792.01.T01:CDS 45.0%
TGTTGTCAAGGGACATAGTC+AGG + Chr1:68219539-68219558 None:intergenic 45.0%
TTCAAACGGGTCGGTAATAC+GGG - Chr1:68219888-68219907 MsG0180003792.01.T01:three_prime_UTR 45.0%
! ACCCTTTTTCCTCTCAATCC+AGG - Chr1:68220847-68220866 MsG0180003792.01.T01:CDS 45.0%
! CCCTTTTTCCTCTCAATCCA+GGG - Chr1:68220848-68220867 MsG0180003792.01.T01:CDS 45.0%
!! GCAACTTTGGAATCTGTCCA+AGG + Chr1:68220784-68220803 None:intergenic 45.0%
AATGACGACAAGGTGGTGTG+AGG + Chr1:68219457-68219476 None:intergenic 50.0%
ACAAGGTGGTGTGAGGAAGA+GGG + Chr1:68219450-68219469 None:intergenic 50.0%
AGAACGGATGAGGGAACTTC+CGG + Chr1:68219514-68219533 None:intergenic 50.0%
CCGAGTTTGGATAAGGCGAA+TGG - Chr1:68219924-68219943 MsG0180003792.01.T01:three_prime_UTR 50.0%
CTAATGCTCCCTGGATTGAG+AGG + Chr1:68220859-68220878 None:intergenic 50.0%
GATCCACTGTGCCAATGTTG+TGG - Chr1:68220000-68220019 MsG0180003792.01.T01:exon 50.0%
GGTGGTGAAAGATCCAACTC+AGG + Chr1:68220113-68220132 None:intergenic 50.0%
GTTCCACAACATTGGCACAG+TGG + Chr1:68220006-68220025 None:intergenic 50.0%
TCGTGGGAATTCAAACGGGT+CGG - Chr1:68219879-68219898 MsG0180003792.01.T01:three_prime_UTR 50.0%
TCTTTGCAGACCTCATGGCA+GGG - Chr1:68220912-68220931 MsG0180003792.01.T01:CDS 50.0%
TGGGTCGTGGGAATTCAAAC+GGG - Chr1:68219875-68219894 MsG0180003792.01.T01:three_prime_UTR 50.0%
TTCTTTGCAGACCTCATGGC+AGG - Chr1:68220911-68220930 MsG0180003792.01.T01:CDS 50.0%
TTGTCGGAGGAATGACGACA+AGG + Chr1:68219467-68219486 None:intergenic 50.0%
!! CTGAGAAGTGGTGGGTATGA+TGG - Chr1:68219975-68219994 MsG0180003792.01.T01:three_prime_UTR 50.0%
!! CTTTGGAATCTGTCCAAGGC+AGG + Chr1:68220780-68220799 None:intergenic 50.0%
!!! TCGGAATTTTGAAGCGGGTC+TGG + Chr1:68219718-68219737 None:intergenic 50.0%
ACGGTTGTGACGAGAAGACC+CGG + Chr1:68219621-68219640 None:intergenic 55.0%
ACGTAGAGGTGGAGACCACT+CGG + Chr1:68219756-68219775 None:intergenic 55.0%
AGACATCATGAGCTGCCACG+TGG + Chr1:68219661-68219680 None:intergenic 55.0%
AGTCAGGCGAGAACGGATGA+GGG + Chr1:68219523-68219542 None:intergenic 55.0%
AGTGGTCTCCACCTCTACGT+TGG - Chr1:68219756-68219775 MsG0180003792.01.T01:intron 55.0%
CGACAACCACTTTCCGCAAC+CGG - Chr1:68219481-68219500 MsG0180003792.01.T01:three_prime_UTR 55.0%
CGACGCAACTGACACTGGAA+CGG + Chr1:68219844-68219863 None:intergenic 55.0%
CGGTTGCGGAAAGTGGTTGT+CGG + Chr1:68219483-68219502 None:intergenic 55.0%
CTCATAGTCCGCGCACTCAA+AGG - Chr1:68219807-68219826 MsG0180003792.01.T01:intron 55.0%
CTTCCAAGCCTTTGAGTGCG+CGG + Chr1:68219818-68219837 None:intergenic 55.0%
GACAAGGTGGTGTGAGGAAG+AGG + Chr1:68219451-68219470 None:intergenic 55.0%
GATAGGGATTCCCTGCCATG+AGG + Chr1:68220925-68220944 None:intergenic 55.0%
GGAATATCCGCCAGTGGGAT+CGG + Chr1:68219697-68219716 None:intergenic 55.0%
GGGACATAGTCAGGCGAGAA+CGG + Chr1:68219530-68219549 None:intergenic 55.0%
TAGTCAGGCGAGAACGGATG+AGG + Chr1:68219524-68219543 None:intergenic 55.0%
TCGGAGGAATGACGACAAGG+TGG + Chr1:68219464-68219483 None:intergenic 55.0%
TTGCGGAAAGTGGTTGTCGG+AGG + Chr1:68219480-68219499 None:intergenic 55.0%
TTGTGACGAGAAGACCCGGT+GGG + Chr1:68219617-68219636 None:intergenic 55.0%
! ATGAGAGTACGGTGAGCCCA+CGG + Chr1:68219792-68219811 None:intergenic 55.0%
! GGTCTGGAATATCCGCCAGT+GGG + Chr1:68219702-68219721 None:intergenic 55.0%
! GTGCGCGGACTATGAGAGTA+CGG + Chr1:68219803-68219822 None:intergenic 55.0%
!! TCGGTGGTGGACCAGAGAAT+CGG + Chr1:68219737-68219756 None:intergenic 55.0%
ACGGGCCAACCCGTTTAACC+CGG + Chr1:68220087-68220106 None:intergenic 60.0%
AGTCCGCGCACTCAAAGGCT+TGG - Chr1:68219812-68219831 MsG0180003792.01.T01:intron 60.0%
ATATCCGCCAGTGGGATCGG+AGG + Chr1:68219694-68219713 None:intergenic 60.0%
ATGGCAGGCCAACGTAGAGG+TGG + Chr1:68219767-68219786 None:intergenic 60.0%
GAGTCTCCGGTTGCGGAAAG+TGG + Chr1:68219490-68219509 None:intergenic 60.0%
GGGAACTTCCGGTGAGTCTC+CGG + Chr1:68219503-68219522 None:intergenic 60.0%
GTTGGCCCGTAACCCTGAGT+TGG - Chr1:68220097-68220116 MsG0180003792.01.T01:intron 60.0%
GTTGTGACGAGAAGACCCGG+TGG + Chr1:68219618-68219637 None:intergenic 60.0%
TAGAGGTGGAGACCACTCGG+TGG + Chr1:68219753-68219772 None:intergenic 60.0%
TATCCGCCAGTGGGATCGGA+GGG + Chr1:68219693-68219712 None:intergenic 60.0%
TCCAGTGTCAGTTGCGTCGC+CGG - Chr1:68219845-68219864 MsG0180003792.01.T01:three_prime_UTR 60.0%
TCCCACGACCCATCCATTCC+CGG + Chr1:68219867-68219886 None:intergenic 60.0%
TTCCGCAACCGGAGACTCAC+CGG - Chr1:68219492-68219511 MsG0180003792.01.T01:three_prime_UTR 60.0%
TTCCGGTGAGTCTCCGGTTG+CGG + Chr1:68219497-68219516 None:intergenic 60.0%
TTCTCTGGTCCACCACCGAG+TGG - Chr1:68219738-68219757 MsG0180003792.01.T01:intron 60.0%
TTGCGTCGCCGGGAATGGAT+GGG - Chr1:68219856-68219875 MsG0180003792.01.T01:three_prime_UTR 60.0%
! GGGTCTGGAATATCCGCCAG+TGG + Chr1:68219703-68219722 None:intergenic 60.0%
! TGAGAGTACGGTGAGCCCAC+GGG + Chr1:68219791-68219810 None:intergenic 60.0%
ACGTGGAGTTCCAGGCGGTG+CGG + Chr1:68219644-68219663 None:intergenic 65.0%
CCAGTGTCAGTTGCGTCGCC+GGG - Chr1:68219846-68219865 MsG0180003792.01.T01:three_prime_UTR 65.0%
CTGCCACGTGGAGTTCCAGG+CGG + Chr1:68219649-68219668 None:intergenic 65.0%
GACGAGAAGACCCGGTGGGA+GGG + Chr1:68219613-68219632 None:intergenic 65.0%
GAGCTGCCACGTGGAGTTCC+AGG + Chr1:68219652-68219671 None:intergenic 65.0%
GCCGGGAATGGATGGGTCGT+GGG - Chr1:68219863-68219882 MsG0180003792.01.T01:three_prime_UTR 65.0%
GGCATGGCAGGCCAACGTAG+AGG + Chr1:68219770-68219789 None:intergenic 65.0%
GTCAGTTGCGTCGCCGGGAA+TGG - Chr1:68219851-68219870 MsG0180003792.01.T01:three_prime_UTR 65.0%
GTTGCGTCGCCGGGAATGGA+TGG - Chr1:68219855-68219874 MsG0180003792.01.T01:three_prime_UTR 65.0%
TGACGAGAAGACCCGGTGGG+AGG + Chr1:68219614-68219633 None:intergenic 65.0%
! AGGTGGAGACCACTCGGTGG+TGG + Chr1:68219750-68219769 None:intergenic 65.0%
CCCGGCGACGCAACTGACAC+TGG + Chr1:68219849-68219868 None:intergenic 70.0%
CGCCGGGAATGGATGGGTCG+TGG - Chr1:68219862-68219881 MsG0180003792.01.T01:three_prime_UTR 70.0%
CTCGCTCCCTCCGATCCCAC+TGG - Chr1:68219684-68219703 MsG0180003792.01.T01:three_prime_UTR 70.0%
GCACCGCCTGGAACTCCACG+TGG - Chr1:68219643-68219662 MsG0180003792.01.T01:three_prime_UTR 70.0%
GCTCCCTCCGATCCCACTGG+CGG - Chr1:68219687-68219706 MsG0180003792.01.T01:three_prime_UTR 70.0%
GGAGTTCCAGGCGGTGCGGA+CGG + Chr1:68219640-68219659 None:intergenic 70.0%
GTACGGTGAGCCCACGGGCA+TGG + Chr1:68219786-68219805 None:intergenic 70.0%
TCACAACCGTCCGCACCGCC+TGG - Chr1:68219631-68219650 MsG0180003792.01.T01:three_prime_UTR 70.0%
! ACGTTGGCCTGCCATGCCCG+TGG - Chr1:68219772-68219791 MsG0180003792.01.T01:intron 70.0%
! CGTTGGCCTGCCATGCCCGT+GGG - Chr1:68219773-68219792 MsG0180003792.01.T01:intron 70.0%
CTGGGGTCGGTCCCTCCCAC+CGG - Chr1:68219599-68219618 MsG0180003792.01.T01:three_prime_UTR 75.0%
GGTGAGCCCACGGGCATGGC+AGG + Chr1:68219782-68219801 None:intergenic 75.0%
TGGGGTCGGTCCCTCCCACC+GGG - Chr1:68219600-68219619 MsG0180003792.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 68219387 68221136 68219387 ID=MsG0180003792.01;Name=MsG0180003792.01
Chr1 mRNA 68219387 68221136 68219387 ID=MsG0180003792.01.T01;Parent=MsG0180003792.01;Name=MsG0180003792.01.T01;_AED=0.13;_eAED=0.15;_QI=0|1|0.66|1|0.5|0.66|3|531|292
Chr1 exon 68219387 68219732 68219387 ID=MsG0180003792.01.T01:exon:5841;Parent=MsG0180003792.01.T01
Chr1 exon 68219822 68220070 68219822 ID=MsG0180003792.01.T01:exon:5840;Parent=MsG0180003792.01.T01
Chr1 exon 68220322 68221136 68220322 ID=MsG0180003792.01.T01:exon:5839;Parent=MsG0180003792.01.T01
Chr1 CDS 68220322 68221136 68220322 ID=MsG0180003792.01.T01:cds;Parent=MsG0180003792.01.T01
Chr1 CDS 68220007 68220070 68220007 ID=MsG0180003792.01.T01:cds;Parent=MsG0180003792.01.T01
Chr1 three_prime_UTR 68219822 68220006 68219822 ID=MsG0180003792.01.T01:three_prime_utr;Parent=MsG0180003792.01.T01
Chr1 three_prime_UTR 68219387 68219732 68219387 ID=MsG0180003792.01.T01:three_prime_utr;Parent=MsG0180003792.01.T01
Gene Sequence

>MsG0180003792.01.T01

TTGTTTAAACCCTCAAAATATTCGATATCTTCACAAGAAATGTCGATGTTGTGCGCTTCTCCCTCTTCCTCACACCACCTTGTCGTCATTCCTCCGACAACCACTTTCCGCAACCGGAGACTCACCGGAAGTTCCCTCATCCGTTCTCGCCTGACTATGTCCCTTGACAACAACAATTCCTCTTCCCTACTAAGTTCTGTTACAAAACTTCTCTGGGGTCGGTCCCTCCCACCGGGTCTTCTCGTCACAACCGTCCGCACCGCCTGGAACTCCACGTGGCAGCTCATGATGTCTCAGCTCGCTCCCTCCGATCCCACTGGCGGATATTCCAGACCCGCTTCAAAATTCCGATTCTCTGGTCCACCACCGAGTGGTCTCCACCTCTACGTTGGCCTGCCATGCCCGTGGGCTCACCGTACTCTCATAGTCCGCGCACTCAAAGGCTTGGAAGATGCCGTTCCAGTGTCAGTTGCGTCGCCGGGAATGGATGGGTCGTGGGAATTCAAACGGGTCGGTAATACGGGTCATGTAATTAGTCCGAGTTTGGATAAGGCGAATGGTTGCAAGACTTTAAAAGAAGTATATAGGCTGAGAAGTGGTGGGTATGATGGAAGATCCACTGTGCCAATGTTGTGGAACAAAGACTCCAAAGATGTTGTATGTAATGAAAGCTATGACATAATTCAATTGTTTAATTCCGGGTTAAACGGGTTGGCCCGTAACCCTGAGTTGGATCTTTCACCACCTGAATTAAAGGATAAGATTGAGGAATGGTATCAAGTGATATATCCAAACGTGAACAACGGTGTGTATAGGTGTGGGTTTGCGCAGAGCCAAGAAGCATATGATAGAGCAGTGAATGATTGTTTTGTACACTAG

Protein sequence

>MsG0180003792.01.T01

LFKPSKYSISSQEMSMLCASPSSSHHLVVIPPTTTFRNRRLTGSSLIRSRLTMSLDNNNSSSLLSSVTKLLWGRSLPPGLLVTTVRTAWNSTWQLMMSQLAPSDPTGGYSRPASKFRFSGPPPSGLHLYVGLPCPWAHRTLIVRALKGLEDAVPVSVASPGMDGSWEFKRVGNTGHVISPSLDKANGCKTLKEVYRLRSGGYDGRSTVPMLWNKDSKDVVCNESYDIIQLFNSGLNGLARNPELDLSPPELKDKIEEWYQVIYPNVNNGVYRCGFAQSQEAYDRAVNDCFVH*