Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180003792.01.T01 | XP_013468440.2 | 93.662 | 284 | 14 | 1 | 11 | 290 | 2 | 285 | 5.67E-178 | 507 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180003792.01.T01 | P42620 | 39.556 | 225 | 102 | 7 | 85 | 290 | 5 | 214 | 1.04E-36 | 136 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180003792.01.T01 | A0A396JZN6 | 93.662 | 284 | 14 | 1 | 11 | 290 | 2 | 285 | 2.71e-178 | 507 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180003792.01 | MsG0180003898.01 | -0.802845 | 4.624236e-49 | 2.288907e-46 |
MsG0180003792.01 | MsG0280010824.01 | -0.801003 | 1.105433e-48 | 5.221846e-46 |
MsG0180003792.01 | MsG0380016264.01 | -0.804565 | 2.032642e-49 | 1.051454e-46 |
MsG0180003792.01 | MsG0480021166.01 | 0.903223 | 4.331073e-79 | 6.349758e-75 |
MsG0180003792.01 | MsG0580024467.01 | -0.805867 | 1.084841e-49 | 5.803246e-47 |
MsG0180003792.01 | MsG0580027993.01 | -0.855970 | 4.410896e-62 | 1.036504e-58 |
MsG0180003792.01 | MsG0680034676.01 | 0.805500 | 1.295667e-49 | 6.865552e-47 |
MsG0180003792.01 | MsG0780036852.01 | -0.801116 | 1.047871e-48 | 4.963941e-46 |
MsG0180003792.01 | MsG0880042158.01 | -0.816580 | 5.140695e-52 | 3.656728e-49 |
MsG0180003792.01 | MsG0880042832.01 | -0.821847 | 3.248018e-53 | 2.673216e-50 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0480022174.01 | MsG0180003792.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180003792.01.T01 | MTR_1g069575 | 93.704 | 270 | 13 | 1 | 25 | 290 | 12 | 281 | 1.06e-179 | 501 |
MsG0180003792.01.T01 | MTR_4g084040 | 40.187 | 214 | 109 | 5 | 94 | 290 | 30 | 241 | 7.78e-43 | 150 |
MsG0180003792.01.T01 | MTR_4g084040 | 40.376 | 213 | 108 | 5 | 95 | 290 | 1 | 211 | 1.48e-42 | 149 |
MsG0180003792.01.T01 | MTR_4g084040 | 47.826 | 115 | 60 | 0 | 176 | 290 | 31 | 145 | 3.37e-31 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180003792.01.T01 | AT5G44000 | 71.429 | 231 | 56 | 3 | 69 | 290 | 44 | 273 | 4.72e-116 | 340 |
MsG0180003792.01.T01 | AT4G19880 | 38.222 | 225 | 120 | 4 | 83 | 290 | 20 | 242 | 1.38e-41 | 146 |
MsG0180003792.01.T01 | AT4G19880 | 38.222 | 225 | 120 | 4 | 83 | 290 | 20 | 242 | 3.91e-41 | 146 |
MsG0180003792.01.T01 | AT4G19880 | 38.222 | 225 | 120 | 4 | 83 | 290 | 20 | 242 | 5.09e-41 | 146 |
MsG0180003792.01.T01 | AT5G44990 | 38.776 | 196 | 101 | 4 | 108 | 286 | 11 | 204 | 1.86e-39 | 139 |
MsG0180003792.01.T01 | AT5G44990 | 38.776 | 196 | 101 | 4 | 108 | 286 | 11 | 204 | 9.56e-39 | 139 |
MsG0180003792.01.T01 | AT5G44990 | 38.776 | 196 | 101 | 4 | 108 | 286 | 11 | 204 | 9.56e-39 | 139 |
MsG0180003792.01.T01 | AT5G45020 | 37.089 | 213 | 115 | 4 | 95 | 290 | 1 | 211 | 2.18e-37 | 135 |
MsG0180003792.01.T01 | AT5G45020 | 37.089 | 213 | 115 | 4 | 95 | 290 | 1 | 211 | 2.18e-37 | 135 |
MsG0180003792.01.T01 | AT5G44990 | 46.364 | 110 | 59 | 0 | 177 | 286 | 12 | 121 | 1.00e-28 | 111 |
Find 140 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCTCTATCATATGCTTCT+TGG | 0.200519 | 1:+68220030 | None:intergenic |
TCTTTCACCACCTGAATTAA+AGG | 0.217062 | 1:-68220380 | MsG0180003792.01.T01:CDS |
TGAACCAGTATTTGTTAAAT+AGG | 0.222094 | 1:-68219547 | MsG0180003792.01.T01:three_prime_UTR |
TTCATTACATACAACATCTT+TGG | 0.252307 | 1:+68220468 | None:intergenic |
ATCTGCAATTCAACGTTTAT+AGG | 0.259826 | 1:-68219473 | MsG0180003792.01.T01:three_prime_UTR |
TCAATCTTATCCTTTAATTC+AGG | 0.265131 | 1:+68220370 | None:intergenic |
TACAAAGAAAGTGAAAATTT+TGG | 0.270037 | 1:+68219385 | None:intergenic |
ATTACAAGTATCTGCAACTT+TGG | 0.312973 | 1:+68219707 | None:intergenic |
GTTCTGTTACAAAACTTCTC+TGG | 0.315841 | 1:-68220921 | MsG0180003792.01.T01:CDS |
ATTGCCTATTTAACAAATAC+TGG | 0.329847 | 1:+68219543 | None:intergenic |
ATTCAAACGGGTCGGTAATA+CGG | 0.330260 | 1:-68220614 | MsG0180003792.01.T01:CDS |
ATAATTCAATTGTTTAATTC+CGG | 0.334525 | 1:-68220436 | MsG0180003792.01.T01:CDS |
TAATTCAATTGTTTAATTCC+GGG | 0.335485 | 1:-68220435 | MsG0180003792.01.T01:CDS |
GAGCTGCCACGTGGAGTTCC+AGG | 0.336140 | 1:+68220852 | None:intergenic |
TACACACCGTTGTTCACGTT+TGG | 0.336302 | 1:+68220325 | None:intergenic |
TCTGAAGTTGAAGGCATAAT+TGG | 0.346959 | 1:+68219621 | None:intergenic |
GACAAGGTGGTGTGAGGAAG+AGG | 0.351548 | 1:+68221053 | None:intergenic |
ATACTCATATAACTTCTTCT+TGG | 0.353135 | 1:+68219858 | None:intergenic |
TTGTTTAATTCCGGGTTAAA+CGG | 0.357379 | 1:-68220427 | MsG0180003792.01.T01:CDS |
TCATGTAATTAGTCCGAGTT+TGG | 0.362164 | 1:-68220590 | MsG0180003792.01.T01:CDS |
TCCCTGGATTGAGAGGAAAA+AGG | 0.376331 | 1:+68219652 | None:intergenic |
CTGGGGTCGGTCCCTCCCAC+CGG | 0.396579 | 1:-68220902 | MsG0180003792.01.T01:CDS |
TCCAGTGTCAGTTGCGTCGC+CGG | 0.397459 | 1:-68220656 | MsG0180003792.01.T01:CDS |
AGACTTTAAAAGAAGTATAT+AGG | 0.397864 | 1:-68220549 | MsG0180003792.01.T01:CDS |
TTCTGTTACAAAACTTCTCT+GGG | 0.401395 | 1:-68220920 | MsG0180003792.01.T01:CDS |
GTCTGTTTACTACTTTGATT+CGG | 0.402179 | 1:-68219915 | MsG0180003792.01.T01:three_prime_UTR |
CGCCGGGAATGGATGGGTCG+TGG | 0.403839 | 1:-68220639 | MsG0180003792.01.T01:CDS |
CTACATGCGTCACATTTATC+AGG | 0.404982 | 1:-68219821 | MsG0180003792.01.T01:intron |
GTTGCGTCGCCGGGAATGGA+TGG | 0.406208 | 1:-68220646 | MsG0180003792.01.T01:CDS |
GTCAGTTGCGTCGCCGGGAA+TGG | 0.413562 | 1:-68220650 | MsG0180003792.01.T01:CDS |
TTCAAACGGGTCGGTAATAC+GGG | 0.417761 | 1:-68220613 | MsG0180003792.01.T01:CDS |
AAGATCCAACTCAGGGTTAC+GGG | 0.418289 | 1:+68220399 | None:intergenic |
TGTTTAATTCCGGGTTAAAC+GGG | 0.419709 | 1:-68220426 | MsG0180003792.01.T01:CDS |
CGACAACCACTTTCCGCAAC+CGG | 0.426378 | 1:-68221020 | MsG0180003792.01.T01:CDS |
ATTTCATGCTCTGAAGTTGA+AGG | 0.430518 | 1:+68219612 | None:intergenic |
GCTTCAAAATTCCGATTCTC+TGG | 0.443348 | 1:-68220778 | MsG0180003792.01.T01:CDS |
CTGGTTCAGTTGATGATGAT+AGG | 0.444961 | 1:+68219562 | None:intergenic |
AGAACGGATGAGGGAACTTC+CGG | 0.445710 | 1:+68220990 | None:intergenic |
CACTAAATGTTATCATGTAC+TGG | 0.447151 | 1:-68219421 | MsG0180003792.01.T01:three_prime_UTR |
AATTAGTCCGAGTTTGGATA+AGG | 0.450978 | 1:-68220584 | MsG0180003792.01.T01:CDS |
CTGAGAAGTGGTGGGTATGA+TGG | 0.455128 | 1:-68220526 | MsG0180003792.01.T01:CDS |
TTCTTTGCAGACCTCATGGC+AGG | 0.455813 | 1:-68219590 | MsG0180003792.01.T01:three_prime_UTR |
GGTGAGCCCACGGGCATGGC+AGG | 0.455919 | 1:+68220722 | None:intergenic |
TTCCGGTGAGTCTCCGGTTG+CGG | 0.460175 | 1:+68221007 | None:intergenic |
TCCCACGACCCATCCATTCC+CGG | 0.466688 | 1:+68220637 | None:intergenic |
ACGTGAACAACGGTGTGTAT+AGG | 0.467210 | 1:-68220321 | MsG0180003792.01.T01:intron |
TCACAACCGTCCGCACCGCC+TGG | 0.467210 | 1:-68220870 | MsG0180003792.01.T01:CDS |
TGTTGTCAAGGGACATAGTC+AGG | 0.469351 | 1:+68220965 | None:intergenic |
CTCGCTCCCTCCGATCCCAC+TGG | 0.477182 | 1:-68220817 | MsG0180003792.01.T01:CDS |
ATCTTATCCTTTAATTCAGG+TGG | 0.486788 | 1:+68220373 | None:intergenic |
CCCGGCGACGCAACTGACAC+TGG | 0.487032 | 1:+68220655 | None:intergenic |
GGGAACTTCCGGTGAGTCTC+CGG | 0.493773 | 1:+68221001 | None:intergenic |
AAAGATCCAACTCAGGGTTA+CGG | 0.495880 | 1:+68220398 | None:intergenic |
GTATATAGGCTGAGAAGTGG+TGG | 0.499430 | 1:-68220535 | MsG0180003792.01.T01:CDS |
GTACGGTGAGCCCACGGGCA+TGG | 0.499751 | 1:+68220718 | None:intergenic |
CGTTGGCCTGCCATGCCCGT+GGG | 0.505206 | 1:-68220728 | MsG0180003792.01.T01:CDS |
TAGTCAGGCGAGAACGGATG+AGG | 0.506765 | 1:+68220980 | None:intergenic |
GGAATATCCGCCAGTGGGAT+CGG | 0.508614 | 1:+68220807 | None:intergenic |
TGGTTCAGTTGATGATGATA+GGG | 0.511787 | 1:+68219563 | None:intergenic |
TGAACAAATCTTTCACCCGT+TGG | 0.514637 | 1:-68219521 | MsG0180003792.01.T01:three_prime_UTR |
TGGGTCGTGGGAATTCAAAC+GGG | 0.519151 | 1:-68220626 | MsG0180003792.01.T01:CDS |
ATGGGTCGTGGGAATTCAAA+CGG | 0.519328 | 1:-68220627 | MsG0180003792.01.T01:CDS |
CCAGTGTCAGTTGCGTCGCC+GGG | 0.521031 | 1:-68220655 | MsG0180003792.01.T01:CDS |
ACGTTGGCCTGCCATGCCCG+TGG | 0.522921 | 1:-68220729 | MsG0180003792.01.T01:CDS |
AGTCCGCGCACTCAAAGGCT+TGG | 0.523773 | 1:-68220689 | MsG0180003792.01.T01:CDS |
TAATTCCGGGTTAAACGGGT+TGG | 0.524230 | 1:-68220422 | MsG0180003792.01.T01:CDS |
CTGATAAATGTGACGCATGT+AGG | 0.524638 | 1:+68219822 | None:intergenic |
CTCATAGTCCGCGCACTCAA+AGG | 0.525005 | 1:-68220694 | MsG0180003792.01.T01:CDS |
GCCGGGAATGGATGGGTCGT+GGG | 0.525533 | 1:-68220638 | MsG0180003792.01.T01:CDS |
TGGGGTCGGTCCCTCCCACC+GGG | 0.530372 | 1:-68220901 | MsG0180003792.01.T01:CDS |
TTCCGCAACCGGAGACTCAC+CGG | 0.534590 | 1:-68221009 | MsG0180003792.01.T01:CDS |
GAAATTCTTTGCAGACCTCA+TGG | 0.534960 | 1:-68219594 | MsG0180003792.01.T01:three_prime_UTR |
TGAATTAAAGGATAAGATTG+AGG | 0.535509 | 1:-68220368 | MsG0180003792.01.T01:CDS |
TCGGTGGTGGACCAGAGAAT+CGG | 0.535907 | 1:+68220767 | None:intergenic |
CGGTTGCGGAAAGTGGTTGT+CGG | 0.536348 | 1:+68221021 | None:intergenic |
GACGAGAAGACCCGGTGGGA+GGG | 0.537088 | 1:+68220891 | None:intergenic |
AAGAGGAATTGTTGTTGTCA+AGG | 0.537371 | 1:+68220953 | None:intergenic |
TTGTACACTAGATGAGTTGG+AGG | 0.544163 | 1:-68219995 | MsG0180003792.01.T01:exon |
GGGACATAGTCAGGCGAGAA+CGG | 0.547841 | 1:+68220974 | None:intergenic |
TCAAATTCTCGCTATTTGTG+TGG | 0.552267 | 1:-68219964 | MsG0180003792.01.T01:three_prime_UTR |
TTGCGTCGCCGGGAATGGAT+GGG | 0.554498 | 1:-68220645 | MsG0180003792.01.T01:CDS |
GAGTCTCCGGTTGCGGAAAG+TGG | 0.555872 | 1:+68221014 | None:intergenic |
AACAGAACTTAGTAGGGAAG+AGG | 0.556724 | 1:+68220936 | None:intergenic |
AGAGGAATTGTTGTTGTCAA+GGG | 0.560702 | 1:+68220954 | None:intergenic |
ACATACAGAACAGAACCAAC+GGG | 0.563191 | 1:+68219506 | None:intergenic |
CTTCCAAGCCTTTGAGTGCG+CGG | 0.563636 | 1:+68220686 | None:intergenic |
ACGGGCCAACCCGTTTAACC+CGG | 0.566457 | 1:+68220417 | None:intergenic |
TTACAAAACTTCTCTGGGGT+CGG | 0.567115 | 1:-68220915 | MsG0180003792.01.T01:CDS |
AGGTGGAGACCACTCGGTGG+TGG | 0.569761 | 1:+68220754 | None:intergenic |
TATATAGGCTGAGAAGTGGT+GGG | 0.570077 | 1:-68220534 | MsG0180003792.01.T01:CDS |
GGAGTTCCAGGCGGTGCGGA+CGG | 0.570604 | 1:+68220864 | None:intergenic |
GTTGGCCCGTAACCCTGAGT+TGG | 0.571773 | 1:-68220404 | MsG0180003792.01.T01:CDS |
GAGTCTTTGTTCCACAACAT+TGG | 0.572372 | 1:+68220490 | None:intergenic |
CTAATGCTCCCTGGATTGAG+AGG | 0.577711 | 1:+68219645 | None:intergenic |
ATGAGAGTACGGTGAGCCCA+CGG | 0.579375 | 1:+68220712 | None:intergenic |
CCATTCGCCTTATCCAAACT+CGG | 0.588222 | 1:+68220577 | None:intergenic |
CCGAGTTTGGATAAGGCGAA+TGG | 0.588244 | 1:-68220577 | MsG0180003792.01.T01:CDS |
GATCCACTGTGCCAATGTTG+TGG | 0.590586 | 1:-68220501 | MsG0180003792.01.T01:CDS |
GGTGGTGAAAGATCCAACTC+AGG | 0.593310 | 1:+68220391 | None:intergenic |
CGACGCAACTGACACTGGAA+CGG | 0.595413 | 1:+68220660 | None:intergenic |
TGAGAGTACGGTGAGCCCAC+GGG | 0.597158 | 1:+68220713 | None:intergenic |
GAAGTATATAGGCTGAGAAG+TGG | 0.600922 | 1:-68220538 | MsG0180003792.01.T01:CDS |
TATCCGCCAGTGGGATCGGA+GGG | 0.602717 | 1:+68220811 | None:intergenic |
ATAATTGGTCTAATGCTCCC+TGG | 0.605043 | 1:+68219636 | None:intergenic |
AAATGTTATCATGTACTGGC+TGG | 0.607690 | 1:-68219417 | MsG0180003792.01.T01:three_prime_UTR |
ACGGTTGTGACGAGAAGACC+CGG | 0.609002 | 1:+68220883 | None:intergenic |
TACATACAGAACAGAACCAA+CGG | 0.609532 | 1:+68219505 | None:intergenic |
ACGTAGAGGTGGAGACCACT+CGG | 0.613297 | 1:+68220748 | None:intergenic |
ACGCATGTAGGCATGTAGAT+TGG | 0.613504 | 1:+68219834 | None:intergenic |
ATGGCAGGCCAACGTAGAGG+TGG | 0.617427 | 1:+68220737 | None:intergenic |
TAAAGGATAAGATTGAGGAA+TGG | 0.619218 | 1:-68220363 | MsG0180003792.01.T01:CDS |
TGACGAGAAGACCCGGTGGG+AGG | 0.619484 | 1:+68220890 | None:intergenic |
ACAAGGTGGTGTGAGGAAGA+GGG | 0.626050 | 1:+68221054 | None:intergenic |
GTGCGCGGACTATGAGAGTA+CGG | 0.628813 | 1:+68220701 | None:intergenic |
GCTCCCTCCGATCCCACTGG+CGG | 0.629484 | 1:-68220814 | MsG0180003792.01.T01:CDS |
TCTTTGCAGACCTCATGGCA+GGG | 0.630240 | 1:-68219589 | MsG0180003792.01.T01:three_prime_UTR |
ATATCCGCCAGTGGGATCGG+AGG | 0.630429 | 1:+68220810 | None:intergenic |
AGTCAGGCGAGAACGGATGA+GGG | 0.643628 | 1:+68220981 | None:intergenic |
GGCATGGCAGGCCAACGTAG+AGG | 0.643969 | 1:+68220734 | None:intergenic |
TTCTCTGGTCCACCACCGAG+TGG | 0.644068 | 1:-68220763 | MsG0180003792.01.T01:CDS |
TTGCGGAAAGTGGTTGTCGG+AGG | 0.645779 | 1:+68221024 | None:intergenic |
AATGACGACAAGGTGGTGTG+AGG | 0.649943 | 1:+68221047 | None:intergenic |
TCGTGGGAATTCAAACGGGT+CGG | 0.657856 | 1:-68220622 | MsG0180003792.01.T01:CDS |
GGTCTGGAATATCCGCCAGT+GGG | 0.659584 | 1:+68220802 | None:intergenic |
GTTCCACAACATTGGCACAG+TGG | 0.661542 | 1:+68220498 | None:intergenic |
GGGTCTGGAATATCCGCCAG+TGG | 0.663373 | 1:+68220801 | None:intergenic |
GTGGTGAAAGATCCAACTCA+GGG | 0.663800 | 1:+68220392 | None:intergenic |
TTGTCGGAGGAATGACGACA+AGG | 0.674643 | 1:+68221037 | None:intergenic |
ACGTGGAGTTCCAGGCGGTG+CGG | 0.675896 | 1:+68220860 | None:intergenic |
AGTGGTCTCCACCTCTACGT+TGG | 0.677828 | 1:-68220745 | MsG0180003792.01.T01:CDS |
AGACATCATGAGCTGCCACG+TGG | 0.697920 | 1:+68220843 | None:intergenic |
GATAGGGATTCCCTGCCATG+AGG | 0.701385 | 1:+68219579 | None:intergenic |
CTGCCACGTGGAGTTCCAGG+CGG | 0.705558 | 1:+68220855 | None:intergenic |
ATATATCCAAACGTGAACAA+CGG | 0.707057 | 1:-68220331 | MsG0180003792.01.T01:CDS |
TTGTGACGAGAAGACCCGGT+GGG | 0.717453 | 1:+68220887 | None:intergenic |
TCTGTTACAAAACTTCTCTG+GGG | 0.722297 | 1:-68220919 | MsG0180003792.01.T01:CDS |
TCGGAGGAATGACGACAAGG+TGG | 0.725756 | 1:+68221040 | None:intergenic |
GCACCGCCTGGAACTCCACG+TGG | 0.732654 | 1:-68220858 | MsG0180003792.01.T01:CDS |
GTTGTGACGAGAAGACCCGG+TGG | 0.740905 | 1:+68220886 | None:intergenic |
TAGAGGTGGAGACCACTCGG+TGG | 0.771659 | 1:+68220751 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAATTCAATTGTTTAATTC+CGG | - | Chr1:68220065-68220084 | MsG0180003792.01.T01:intron | 15.0% |
!!! | TTGTAATTTTCAAGAAATTA+TGG | - | Chr1:68220810-68220829 | MsG0180003792.01.T01:CDS | 15.0% |
!! | TAATTCAATTGTTTAATTCC+GGG | - | Chr1:68220066-68220085 | MsG0180003792.01.T01:intron | 20.0% |
!!! | AATTTTCAAGAAATTATGGA+TGG | - | Chr1:68220814-68220833 | MsG0180003792.01.T01:CDS | 20.0% |
!!! | AGACTTTAAAAGAAGTATAT+AGG | - | Chr1:68219952-68219971 | MsG0180003792.01.T01:three_prime_UTR | 20.0% |
! | ATACTCATATAACTTCTTCT+TGG | + | Chr1:68220646-68220665 | None:intergenic | 25.0% |
! | ATTGCCTATTTAACAAATAC+TGG | + | Chr1:68220961-68220980 | None:intergenic | 25.0% |
! | TCAATCTTATCCTTTAATTC+AGG | + | Chr1:68220134-68220153 | None:intergenic | 25.0% |
! | TGAATTAAAGGATAAGATTG+AGG | - | Chr1:68220133-68220152 | MsG0180003792.01.T01:intron | 25.0% |
! | TTCATTACATACAACATCTT+TGG | + | Chr1:68220036-68220055 | None:intergenic | 25.0% |
!! | TGAACCAGTATTTGTTAAAT+AGG | - | Chr1:68220954-68220973 | MsG0180003792.01.T01:CDS | 25.0% |
!! | TGAAGATATCGAATATTTTG+AGG | + | Chr1:68219400-68219419 | None:intergenic | 25.0% |
!! | TTTTGTAACAGAACTTAGTA+GGG | + | Chr1:68219574-68219593 | None:intergenic | 25.0% |
!!! | GAAGATATCGAATATTTTGA+GGG | + | Chr1:68219399-68219418 | None:intergenic | 25.0% |
ATATATCCAAACGTGAACAA+CGG | - | Chr1:68220170-68220189 | MsG0180003792.01.T01:intron | 30.0% | |
ATCTGCAATTCAACGTTTAT+AGG | - | Chr1:68221028-68221047 | MsG0180003792.01.T01:CDS | 30.0% | |
ATCTTATCCTTTAATTCAGG+TGG | + | Chr1:68220131-68220150 | None:intergenic | 30.0% | |
ATTACAAGTATCTGCAACTT+TGG | + | Chr1:68220797-68220816 | None:intergenic | 30.0% | |
CAATGAGTTTGAGAAAATCA+CGG | - | Chr1:68220232-68220251 | MsG0180003792.01.T01:intron | 30.0% | |
CACTAAATGTTATCATGTAC+TGG | - | Chr1:68221080-68221099 | MsG0180003792.01.T01:CDS | 30.0% | |
GCTTTGCTCAAAAAATGTTT+AGG | - | Chr1:68220708-68220727 | MsG0180003792.01.T01:CDS | 30.0% | |
GTCTGTTTACTACTTTGATT+CGG | - | Chr1:68220586-68220605 | MsG0180003792.01.T01:CDS | 30.0% | |
TAAAGGATAAGATTGAGGAA+TGG | - | Chr1:68220138-68220157 | MsG0180003792.01.T01:intron | 30.0% | |
TTCTGTTACAAAACTTCTCT+GGG | - | Chr1:68219581-68219600 | MsG0180003792.01.T01:three_prime_UTR | 30.0% | |
TTGTTTAATTCCGGGTTAAA+CGG | - | Chr1:68220074-68220093 | MsG0180003792.01.T01:intron | 30.0% | |
! | GTTTTGTAACAGAACTTAGT+AGG | + | Chr1:68219575-68219594 | None:intergenic | 30.0% |
AATTAGTCCGAGTTTGGATA+AGG | - | Chr1:68219917-68219936 | MsG0180003792.01.T01:three_prime_UTR | 35.0% | |
ATATTATGTGTTTCCTGCCT+TGG | - | Chr1:68220764-68220783 | MsG0180003792.01.T01:CDS | 35.0% | |
GTTCTGTTACAAAACTTCTC+TGG | - | Chr1:68219580-68219599 | MsG0180003792.01.T01:three_prime_UTR | 35.0% | |
TACATACAGAACAGAACCAA+CGG | + | Chr1:68220999-68221018 | None:intergenic | 35.0% | |
TCAAATTCTCGCTATTTGTG+TGG | - | Chr1:68220537-68220556 | MsG0180003792.01.T01:CDS | 35.0% | |
TCATGTAATTAGTCCGAGTT+TGG | - | Chr1:68219911-68219930 | MsG0180003792.01.T01:three_prime_UTR | 35.0% | |
TCTGTTACAAAACTTCTCTG+GGG | - | Chr1:68219582-68219601 | MsG0180003792.01.T01:three_prime_UTR | 35.0% | |
TCTTTCACCACCTGAATTAA+AGG | - | Chr1:68220121-68220140 | MsG0180003792.01.T01:intron | 35.0% | |
TGAATTGCAATTTGCATTGC+AGG | - | Chr1:68220431-68220450 | MsG0180003792.01.T01:CDS | 35.0% | |
TGTTTAATTCCGGGTTAAAC+GGG | - | Chr1:68220075-68220094 | MsG0180003792.01.T01:intron | 35.0% | |
! | AAATGTTATCATGTACTGGC+TGG | - | Chr1:68221084-68221103 | MsG0180003792.01.T01:CDS | 35.0% |
! | AAGAGGAATTGTTGTTGTCA+AGG | + | Chr1:68219551-68219570 | None:intergenic | 35.0% |
! | AGAGGAATTGTTGTTGTCAA+GGG | + | Chr1:68219550-68219569 | None:intergenic | 35.0% |
! | GTTTTGTACACTAGATGAGT+TGG | - | Chr1:68220503-68220522 | MsG0180003792.01.T01:CDS | 35.0% |
! | TCTGAAGTTGAAGGCATAAT+TGG | + | Chr1:68220883-68220902 | None:intergenic | 35.0% |
!! | AGAGAATCGGAATTTTGAAG+CGG | + | Chr1:68219724-68219743 | None:intergenic | 35.0% |
!! | ATTTCATGCTCTGAAGTTGA+AGG | + | Chr1:68220892-68220911 | None:intergenic | 35.0% |
!! | CTGAAGAAGTATTCAAAGTG+AGG | + | Chr1:68220367-68220386 | None:intergenic | 35.0% |
!! | TGGTTCAGTTGATGATGATA+GGG | + | Chr1:68220941-68220960 | None:intergenic | 35.0% |
AAAGATCCAACTCAGGGTTA+CGG | + | Chr1:68220106-68220125 | None:intergenic | 40.0% | |
AACAGAACTTAGTAGGGAAG+AGG | + | Chr1:68219568-68219587 | None:intergenic | 40.0% | |
ACATACAGAACAGAACCAAC+GGG | + | Chr1:68220998-68221017 | None:intergenic | 40.0% | |
ATTCAAACGGGTCGGTAATA+CGG | - | Chr1:68219887-68219906 | MsG0180003792.01.T01:three_prime_UTR | 40.0% | |
CTACATGCGTCACATTTATC+AGG | - | Chr1:68220680-68220699 | MsG0180003792.01.T01:CDS | 40.0% | |
CTGATAAATGTGACGCATGT+AGG | + | Chr1:68220682-68220701 | None:intergenic | 40.0% | |
CTGCTCTATCATATGCTTCT+TGG | + | Chr1:68220474-68220493 | None:intergenic | 40.0% | |
GAAATTCTTTGCAGACCTCA+TGG | - | Chr1:68220907-68220926 | MsG0180003792.01.T01:CDS | 40.0% | |
GAAGTATATAGGCTGAGAAG+TGG | - | Chr1:68219963-68219982 | MsG0180003792.01.T01:three_prime_UTR | 40.0% | |
GAGTCTTTGTTCCACAACAT+TGG | + | Chr1:68220014-68220033 | None:intergenic | 40.0% | |
GCTTCAAAATTCCGATTCTC+TGG | - | Chr1:68219723-68219742 | MsG0180003792.01.T01:intron | 40.0% | |
TATATAGGCTGAGAAGTGGT+GGG | - | Chr1:68219967-68219986 | MsG0180003792.01.T01:three_prime_UTR | 40.0% | |
TATCATTGTAGCGCAAGTCA+TGG | - | Chr1:68220281-68220300 | MsG0180003792.01.T01:intron | 40.0% | |
TGAACAAATCTTTCACCCGT+TGG | - | Chr1:68220980-68220999 | MsG0180003792.01.T01:CDS | 40.0% | |
! | ATAATTGGTCTAATGCTCCC+TGG | + | Chr1:68220868-68220887 | None:intergenic | 40.0% |
! | GAAAATCACGGTGACACTTT+TGG | - | Chr1:68220244-68220263 | MsG0180003792.01.T01:intron | 40.0% |
! | TTGTACACTAGATGAGTTGG+AGG | - | Chr1:68220506-68220525 | MsG0180003792.01.T01:CDS | 40.0% |
!! | CTGGTTCAGTTGATGATGAT+AGG | + | Chr1:68220942-68220961 | None:intergenic | 40.0% |
!! | TTACAAAACTTCTCTGGGGT+CGG | - | Chr1:68219586-68219605 | MsG0180003792.01.T01:three_prime_UTR | 40.0% |
!!! | GAGAATCGGAATTTTGAAGC+GGG | + | Chr1:68219723-68219742 | None:intergenic | 40.0% |
AAGATCCAACTCAGGGTTAC+GGG | + | Chr1:68220105-68220124 | None:intergenic | 45.0% | |
ACGCATGTAGGCATGTAGAT+TGG | + | Chr1:68220670-68220689 | None:intergenic | 45.0% | |
ACGTGAACAACGGTGTGTAT+AGG | - | Chr1:68220180-68220199 | MsG0180003792.01.T01:intron | 45.0% | |
ATGGGTCGTGGGAATTCAAA+CGG | - | Chr1:68219874-68219893 | MsG0180003792.01.T01:three_prime_UTR | 45.0% | |
CCATTCGCCTTATCCAAACT+CGG | + | Chr1:68219927-68219946 | None:intergenic | 45.0% | |
CCCTGGATTGAGAGGAAAAA+GGG | + | Chr1:68220851-68220870 | None:intergenic | 45.0% | |
GCAATTTGCATTGCAGGTGT+GGG | - | Chr1:68220437-68220456 | MsG0180003792.01.T01:CDS | 45.0% | |
GTATATAGGCTGAGAAGTGG+TGG | - | Chr1:68219966-68219985 | MsG0180003792.01.T01:three_prime_UTR | 45.0% | |
GTGGTGAAAGATCCAACTCA+GGG | + | Chr1:68220112-68220131 | None:intergenic | 45.0% | |
TAATTCCGGGTTAAACGGGT+TGG | - | Chr1:68220079-68220098 | MsG0180003792.01.T01:intron | 45.0% | |
TACACACCGTTGTTCACGTT+TGG | + | Chr1:68220179-68220198 | None:intergenic | 45.0% | |
TCCCTGGATTGAGAGGAAAA+AGG | + | Chr1:68220852-68220871 | None:intergenic | 45.0% | |
TGCAATTTGCATTGCAGGTG+TGG | - | Chr1:68220436-68220455 | MsG0180003792.01.T01:CDS | 45.0% | |
TGTTGTCAAGGGACATAGTC+AGG | + | Chr1:68219539-68219558 | None:intergenic | 45.0% | |
TTCAAACGGGTCGGTAATAC+GGG | - | Chr1:68219888-68219907 | MsG0180003792.01.T01:three_prime_UTR | 45.0% | |
! | ACCCTTTTTCCTCTCAATCC+AGG | - | Chr1:68220847-68220866 | MsG0180003792.01.T01:CDS | 45.0% |
! | CCCTTTTTCCTCTCAATCCA+GGG | - | Chr1:68220848-68220867 | MsG0180003792.01.T01:CDS | 45.0% |
!! | GCAACTTTGGAATCTGTCCA+AGG | + | Chr1:68220784-68220803 | None:intergenic | 45.0% |
AATGACGACAAGGTGGTGTG+AGG | + | Chr1:68219457-68219476 | None:intergenic | 50.0% | |
ACAAGGTGGTGTGAGGAAGA+GGG | + | Chr1:68219450-68219469 | None:intergenic | 50.0% | |
AGAACGGATGAGGGAACTTC+CGG | + | Chr1:68219514-68219533 | None:intergenic | 50.0% | |
CCGAGTTTGGATAAGGCGAA+TGG | - | Chr1:68219924-68219943 | MsG0180003792.01.T01:three_prime_UTR | 50.0% | |
CTAATGCTCCCTGGATTGAG+AGG | + | Chr1:68220859-68220878 | None:intergenic | 50.0% | |
GATCCACTGTGCCAATGTTG+TGG | - | Chr1:68220000-68220019 | MsG0180003792.01.T01:exon | 50.0% | |
GGTGGTGAAAGATCCAACTC+AGG | + | Chr1:68220113-68220132 | None:intergenic | 50.0% | |
GTTCCACAACATTGGCACAG+TGG | + | Chr1:68220006-68220025 | None:intergenic | 50.0% | |
TCGTGGGAATTCAAACGGGT+CGG | - | Chr1:68219879-68219898 | MsG0180003792.01.T01:three_prime_UTR | 50.0% | |
TCTTTGCAGACCTCATGGCA+GGG | - | Chr1:68220912-68220931 | MsG0180003792.01.T01:CDS | 50.0% | |
TGGGTCGTGGGAATTCAAAC+GGG | - | Chr1:68219875-68219894 | MsG0180003792.01.T01:three_prime_UTR | 50.0% | |
TTCTTTGCAGACCTCATGGC+AGG | - | Chr1:68220911-68220930 | MsG0180003792.01.T01:CDS | 50.0% | |
TTGTCGGAGGAATGACGACA+AGG | + | Chr1:68219467-68219486 | None:intergenic | 50.0% | |
!! | CTGAGAAGTGGTGGGTATGA+TGG | - | Chr1:68219975-68219994 | MsG0180003792.01.T01:three_prime_UTR | 50.0% |
!! | CTTTGGAATCTGTCCAAGGC+AGG | + | Chr1:68220780-68220799 | None:intergenic | 50.0% |
!!! | TCGGAATTTTGAAGCGGGTC+TGG | + | Chr1:68219718-68219737 | None:intergenic | 50.0% |
ACGGTTGTGACGAGAAGACC+CGG | + | Chr1:68219621-68219640 | None:intergenic | 55.0% | |
ACGTAGAGGTGGAGACCACT+CGG | + | Chr1:68219756-68219775 | None:intergenic | 55.0% | |
AGACATCATGAGCTGCCACG+TGG | + | Chr1:68219661-68219680 | None:intergenic | 55.0% | |
AGTCAGGCGAGAACGGATGA+GGG | + | Chr1:68219523-68219542 | None:intergenic | 55.0% | |
AGTGGTCTCCACCTCTACGT+TGG | - | Chr1:68219756-68219775 | MsG0180003792.01.T01:intron | 55.0% | |
CGACAACCACTTTCCGCAAC+CGG | - | Chr1:68219481-68219500 | MsG0180003792.01.T01:three_prime_UTR | 55.0% | |
CGACGCAACTGACACTGGAA+CGG | + | Chr1:68219844-68219863 | None:intergenic | 55.0% | |
CGGTTGCGGAAAGTGGTTGT+CGG | + | Chr1:68219483-68219502 | None:intergenic | 55.0% | |
CTCATAGTCCGCGCACTCAA+AGG | - | Chr1:68219807-68219826 | MsG0180003792.01.T01:intron | 55.0% | |
CTTCCAAGCCTTTGAGTGCG+CGG | + | Chr1:68219818-68219837 | None:intergenic | 55.0% | |
GACAAGGTGGTGTGAGGAAG+AGG | + | Chr1:68219451-68219470 | None:intergenic | 55.0% | |
GATAGGGATTCCCTGCCATG+AGG | + | Chr1:68220925-68220944 | None:intergenic | 55.0% | |
GGAATATCCGCCAGTGGGAT+CGG | + | Chr1:68219697-68219716 | None:intergenic | 55.0% | |
GGGACATAGTCAGGCGAGAA+CGG | + | Chr1:68219530-68219549 | None:intergenic | 55.0% | |
TAGTCAGGCGAGAACGGATG+AGG | + | Chr1:68219524-68219543 | None:intergenic | 55.0% | |
TCGGAGGAATGACGACAAGG+TGG | + | Chr1:68219464-68219483 | None:intergenic | 55.0% | |
TTGCGGAAAGTGGTTGTCGG+AGG | + | Chr1:68219480-68219499 | None:intergenic | 55.0% | |
TTGTGACGAGAAGACCCGGT+GGG | + | Chr1:68219617-68219636 | None:intergenic | 55.0% | |
! | ATGAGAGTACGGTGAGCCCA+CGG | + | Chr1:68219792-68219811 | None:intergenic | 55.0% |
! | GGTCTGGAATATCCGCCAGT+GGG | + | Chr1:68219702-68219721 | None:intergenic | 55.0% |
! | GTGCGCGGACTATGAGAGTA+CGG | + | Chr1:68219803-68219822 | None:intergenic | 55.0% |
!! | TCGGTGGTGGACCAGAGAAT+CGG | + | Chr1:68219737-68219756 | None:intergenic | 55.0% |
ACGGGCCAACCCGTTTAACC+CGG | + | Chr1:68220087-68220106 | None:intergenic | 60.0% | |
AGTCCGCGCACTCAAAGGCT+TGG | - | Chr1:68219812-68219831 | MsG0180003792.01.T01:intron | 60.0% | |
ATATCCGCCAGTGGGATCGG+AGG | + | Chr1:68219694-68219713 | None:intergenic | 60.0% | |
ATGGCAGGCCAACGTAGAGG+TGG | + | Chr1:68219767-68219786 | None:intergenic | 60.0% | |
GAGTCTCCGGTTGCGGAAAG+TGG | + | Chr1:68219490-68219509 | None:intergenic | 60.0% | |
GGGAACTTCCGGTGAGTCTC+CGG | + | Chr1:68219503-68219522 | None:intergenic | 60.0% | |
GTTGGCCCGTAACCCTGAGT+TGG | - | Chr1:68220097-68220116 | MsG0180003792.01.T01:intron | 60.0% | |
GTTGTGACGAGAAGACCCGG+TGG | + | Chr1:68219618-68219637 | None:intergenic | 60.0% | |
TAGAGGTGGAGACCACTCGG+TGG | + | Chr1:68219753-68219772 | None:intergenic | 60.0% | |
TATCCGCCAGTGGGATCGGA+GGG | + | Chr1:68219693-68219712 | None:intergenic | 60.0% | |
TCCAGTGTCAGTTGCGTCGC+CGG | - | Chr1:68219845-68219864 | MsG0180003792.01.T01:three_prime_UTR | 60.0% | |
TCCCACGACCCATCCATTCC+CGG | + | Chr1:68219867-68219886 | None:intergenic | 60.0% | |
TTCCGCAACCGGAGACTCAC+CGG | - | Chr1:68219492-68219511 | MsG0180003792.01.T01:three_prime_UTR | 60.0% | |
TTCCGGTGAGTCTCCGGTTG+CGG | + | Chr1:68219497-68219516 | None:intergenic | 60.0% | |
TTCTCTGGTCCACCACCGAG+TGG | - | Chr1:68219738-68219757 | MsG0180003792.01.T01:intron | 60.0% | |
TTGCGTCGCCGGGAATGGAT+GGG | - | Chr1:68219856-68219875 | MsG0180003792.01.T01:three_prime_UTR | 60.0% | |
! | GGGTCTGGAATATCCGCCAG+TGG | + | Chr1:68219703-68219722 | None:intergenic | 60.0% |
! | TGAGAGTACGGTGAGCCCAC+GGG | + | Chr1:68219791-68219810 | None:intergenic | 60.0% |
ACGTGGAGTTCCAGGCGGTG+CGG | + | Chr1:68219644-68219663 | None:intergenic | 65.0% | |
CCAGTGTCAGTTGCGTCGCC+GGG | - | Chr1:68219846-68219865 | MsG0180003792.01.T01:three_prime_UTR | 65.0% | |
CTGCCACGTGGAGTTCCAGG+CGG | + | Chr1:68219649-68219668 | None:intergenic | 65.0% | |
GACGAGAAGACCCGGTGGGA+GGG | + | Chr1:68219613-68219632 | None:intergenic | 65.0% | |
GAGCTGCCACGTGGAGTTCC+AGG | + | Chr1:68219652-68219671 | None:intergenic | 65.0% | |
GCCGGGAATGGATGGGTCGT+GGG | - | Chr1:68219863-68219882 | MsG0180003792.01.T01:three_prime_UTR | 65.0% | |
GGCATGGCAGGCCAACGTAG+AGG | + | Chr1:68219770-68219789 | None:intergenic | 65.0% | |
GTCAGTTGCGTCGCCGGGAA+TGG | - | Chr1:68219851-68219870 | MsG0180003792.01.T01:three_prime_UTR | 65.0% | |
GTTGCGTCGCCGGGAATGGA+TGG | - | Chr1:68219855-68219874 | MsG0180003792.01.T01:three_prime_UTR | 65.0% | |
TGACGAGAAGACCCGGTGGG+AGG | + | Chr1:68219614-68219633 | None:intergenic | 65.0% | |
! | AGGTGGAGACCACTCGGTGG+TGG | + | Chr1:68219750-68219769 | None:intergenic | 65.0% |
CCCGGCGACGCAACTGACAC+TGG | + | Chr1:68219849-68219868 | None:intergenic | 70.0% | |
CGCCGGGAATGGATGGGTCG+TGG | - | Chr1:68219862-68219881 | MsG0180003792.01.T01:three_prime_UTR | 70.0% | |
CTCGCTCCCTCCGATCCCAC+TGG | - | Chr1:68219684-68219703 | MsG0180003792.01.T01:three_prime_UTR | 70.0% | |
GCACCGCCTGGAACTCCACG+TGG | - | Chr1:68219643-68219662 | MsG0180003792.01.T01:three_prime_UTR | 70.0% | |
GCTCCCTCCGATCCCACTGG+CGG | - | Chr1:68219687-68219706 | MsG0180003792.01.T01:three_prime_UTR | 70.0% | |
GGAGTTCCAGGCGGTGCGGA+CGG | + | Chr1:68219640-68219659 | None:intergenic | 70.0% | |
GTACGGTGAGCCCACGGGCA+TGG | + | Chr1:68219786-68219805 | None:intergenic | 70.0% | |
TCACAACCGTCCGCACCGCC+TGG | - | Chr1:68219631-68219650 | MsG0180003792.01.T01:three_prime_UTR | 70.0% | |
! | ACGTTGGCCTGCCATGCCCG+TGG | - | Chr1:68219772-68219791 | MsG0180003792.01.T01:intron | 70.0% |
! | CGTTGGCCTGCCATGCCCGT+GGG | - | Chr1:68219773-68219792 | MsG0180003792.01.T01:intron | 70.0% |
CTGGGGTCGGTCCCTCCCAC+CGG | - | Chr1:68219599-68219618 | MsG0180003792.01.T01:three_prime_UTR | 75.0% | |
GGTGAGCCCACGGGCATGGC+AGG | + | Chr1:68219782-68219801 | None:intergenic | 75.0% | |
TGGGGTCGGTCCCTCCCACC+GGG | - | Chr1:68219600-68219619 | MsG0180003792.01.T01:three_prime_UTR | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 68219387 | 68221136 | 68219387 | ID=MsG0180003792.01;Name=MsG0180003792.01 |
Chr1 | mRNA | 68219387 | 68221136 | 68219387 | ID=MsG0180003792.01.T01;Parent=MsG0180003792.01;Name=MsG0180003792.01.T01;_AED=0.13;_eAED=0.15;_QI=0|1|0.66|1|0.5|0.66|3|531|292 |
Chr1 | exon | 68219387 | 68219732 | 68219387 | ID=MsG0180003792.01.T01:exon:5841;Parent=MsG0180003792.01.T01 |
Chr1 | exon | 68219822 | 68220070 | 68219822 | ID=MsG0180003792.01.T01:exon:5840;Parent=MsG0180003792.01.T01 |
Chr1 | exon | 68220322 | 68221136 | 68220322 | ID=MsG0180003792.01.T01:exon:5839;Parent=MsG0180003792.01.T01 |
Chr1 | CDS | 68220322 | 68221136 | 68220322 | ID=MsG0180003792.01.T01:cds;Parent=MsG0180003792.01.T01 |
Chr1 | CDS | 68220007 | 68220070 | 68220007 | ID=MsG0180003792.01.T01:cds;Parent=MsG0180003792.01.T01 |
Chr1 | three_prime_UTR | 68219822 | 68220006 | 68219822 | ID=MsG0180003792.01.T01:three_prime_utr;Parent=MsG0180003792.01.T01 |
Chr1 | three_prime_UTR | 68219387 | 68219732 | 68219387 | ID=MsG0180003792.01.T01:three_prime_utr;Parent=MsG0180003792.01.T01 |
Gene Sequence |
Protein sequence |