AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036852.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036852.01.T01 MTR_7g021660 70.588 170 39 3 1 159 1 170 7.49e-79 231
MsG0780036852.01.T01 MTR_7g079870 35.849 159 76 4 1 136 1 156 1.21e-17 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036852.01.T01 AT5G16490 34.000 150 69 5 1 131 1 139 2.06e-12 61.6

Find 27 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATTGCTTTAACGTAAT+TGG 0.106249 7:+15047050 None:intergenic
ATGGAACCAGATATGGAAAT+AGG 0.262567 7:-15047185 MsG0780036852.01.T01:CDS
TCTAATTCAAGTGTGGAATT+AGG 0.264997 7:-15050736 MsG0780036852.01.T01:CDS
GGATACCCTATTTCCATATC+TGG 0.279714 7:+15047179 None:intergenic
AAACGTTGAAATAGCTTTAG+AGG 0.304799 7:+15050657 None:intergenic
TACGTTAAAGCAATTTGAAT+TGG 0.328292 7:-15047045 MsG0780036852.01.T01:CDS
GAAGCACACCTGAAAGAAAA+AGG 0.337416 7:+15050757 None:intergenic
GGAGATAAAGAAAGTAATTC+AGG 0.354220 7:+15047071 None:intergenic
CCAATCTTTAACATTATTTG+TGG 0.386735 7:+15047109 None:intergenic
CCACAAATAATGTTAAAGAT+TGG 0.389223 7:-15047109 MsG0780036852.01.T01:CDS
GTGAAGCATGTAACACATAT+TGG 0.392648 7:-15047149 MsG0780036852.01.T01:CDS
TGAGGAGATGGAACCAGATA+TGG 0.397227 7:-15047192 MsG0780036852.01.T01:CDS
GTAACACATATTGGACTTGA+TGG 0.403212 7:-15047140 MsG0780036852.01.T01:CDS
CAATGAGTGGTTGGTGAGCT+TGG 0.421221 7:+15047012 None:intergenic
CACAAATAATGTTAAAGATT+GGG 0.428541 7:-15047108 MsG0780036852.01.T01:CDS
AGAAGAAATGAGAAATCATA+TGG 0.448869 7:-15050797 None:intergenic
TGGAACCAGATATGGAAATA+GGG 0.449151 7:-15047184 MsG0780036852.01.T01:CDS
TAAAGATTGGGACAATTTGA+AGG 0.461704 7:-15047096 MsG0780036852.01.T01:CDS
AAGAGTTATCAATGAGTGGT+TGG 0.512846 7:+15047003 None:intergenic
AATGAGTGGTTGGTGAGCTT+GGG 0.519534 7:+15047013 None:intergenic
AAAGCAATTTGAATTGGCCA+TGG 0.548884 7:-15047039 MsG0780036852.01.T01:CDS
TAACACATATTGGACTTGAT+GGG 0.552869 7:-15047139 MsG0780036852.01.T01:CDS
TTGGTGAGCTTGGGTAGCCA+TGG 0.554788 7:+15047022 None:intergenic
GGAGAAGAGTTATCAATGAG+TGG 0.571021 7:+15046999 None:intergenic
GTTACATGCTTCACATCCGT+TGG 0.572507 7:+15047158 None:intergenic
GTGTGCTTCTAATTCAAGTG+TGG 0.662982 7:-15050743 MsG0780036852.01.T01:CDS
TATGGAAATAGGGTATCCAA+CGG 0.670674 7:-15047174 MsG0780036852.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTCATATATTTGTATTA+TGG - Chr7:15050436-15050455 MsG0780036852.01.T01:intron 10.0%
!!! AAAAATAAAAATGCTTTTAA+AGG - Chr7:15049596-15049615 MsG0780036852.01.T01:intron 10.0%
!! AACAAATTATTAGAAAGAAA+AGG + Chr7:15049987-15050006 None:intergenic 15.0%
!! AATACAAATATATGAATAAG+TGG + Chr7:15050435-15050454 None:intergenic 15.0%
!! AGTAATATTCTAAATTTGAA+TGG + Chr7:15048373-15048392 None:intergenic 15.0%
!! ATACAAATATATGAATAAGT+GGG + Chr7:15050434-15050453 None:intergenic 15.0%
!!! ACTTTTTACAAAATAAACAT+AGG + Chr7:15050095-15050114 None:intergenic 15.0%
!!! ATGTTTATTTTGTAAAAAGT+TGG - Chr7:15050095-15050114 MsG0780036852.01.T01:intron 15.0%
!!! ATTTTTCTTTCTTTAGTTAT+TGG - Chr7:15047154-15047173 MsG0780036852.01.T01:CDS 15.0%
!!! TTATTTTTTACAAATGAAGA+AGG - Chr7:15049002-15049021 MsG0780036852.01.T01:intron 15.0%
!!! TTCTTTACATTTTTTATTGT+TGG - Chr7:15047376-15047395 MsG0780036852.01.T01:intron 15.0%
!! AAATCAAAAGAGATTATTCT+TGG + Chr7:15049882-15049901 None:intergenic 20.0%
!! AATAAGAAGTAAGAAAAACA+AGG + Chr7:15048828-15048847 None:intergenic 20.0%
!! AATCAAAAGAGATTATTCTT+GGG + Chr7:15049881-15049900 None:intergenic 20.0%
!! AATCAAAGTTTCAATACAAT+TGG + Chr7:15049435-15049454 None:intergenic 20.0%
!! ATCAAAGTTTCAATACAATT+GGG + Chr7:15049434-15049453 None:intergenic 20.0%
!! CACAAATAATGTTAAAGATT+GGG - Chr7:15050668-15050687 MsG0780036852.01.T01:CDS 20.0%
!! TAGCTAAGTTTATAACTTTA+TGG - Chr7:15049160-15049179 MsG0780036852.01.T01:intron 20.0%
!! TGTTTACATGATAAAACATT+AGG + Chr7:15050058-15050077 None:intergenic 20.0%
!! TTTCTCTCAAAAAAACTTTA+GGG - Chr7:15049480-15049499 MsG0780036852.01.T01:intron 20.0%
!! TTTGATTAGCAATAATAGTT+TGG - Chr7:15047537-15047556 MsG0780036852.01.T01:intron 20.0%
!!! AATAATAGTTTGGAACTATT+GGG - Chr7:15047547-15047566 MsG0780036852.01.T01:intron 20.0%
!!! AATTTGTTTTTGTTTGTACA+TGG - Chr7:15047410-15047429 MsG0780036852.01.T01:intron 20.0%
!!! ATCGTTTTAATTTTTTAGCT+CGG + Chr7:15049510-15049529 None:intergenic 20.0%
!!! ATTTGAAATATTTGTTTGCA+AGG - Chr7:15047185-15047204 MsG0780036852.01.T01:CDS 20.0%
!!! CATTGGTATACAATTTATTT+TGG - Chr7:15048757-15048776 MsG0780036852.01.T01:intron 20.0%
!!! TTGTTTTTCTTACTTCTTAT+TGG - Chr7:15048827-15048846 MsG0780036852.01.T01:intron 20.0%
!!! TTTTCTCTCAAAAAAACTTT+AGG - Chr7:15049479-15049498 MsG0780036852.01.T01:intron 20.0%
! AAAAAATGGGTCAATTAAAG+TGG + Chr7:15048648-15048667 None:intergenic 25.0%
! AAAACAATGGAGAGAAAAAA+AGG - Chr7:15048853-15048872 MsG0780036852.01.T01:intron 25.0%
! AATGGTAAAAAAAATCATCC+AGG + Chr7:15050402-15050421 None:intergenic 25.0%
! ACACTATATATGTTATATCG+CGG + Chr7:15048103-15048122 None:intergenic 25.0%
! ACGCTACAATTTATTTGAAA+TGG - Chr7:15048607-15048626 MsG0780036852.01.T01:intron 25.0%
! AGTAATATTCATCATTCTTG+CGG + Chr7:15049831-15049850 None:intergenic 25.0%
! AGTAGCTAAAGAGTTAATAA+GGG - Chr7:15048141-15048160 MsG0780036852.01.T01:intron 25.0%
! ATAAGTGGGATTGAAATAAA+TGG + Chr7:15050420-15050439 None:intergenic 25.0%
! ATGAATTGAATAAGATGGAA+AGG + Chr7:15049944-15049963 None:intergenic 25.0%
! CAACCAAAATCAAGAAAAAA+AGG - Chr7:15047231-15047250 MsG0780036852.01.T01:CDS 25.0%
! CCAATCTTTAACATTATTTG+TGG + Chr7:15050670-15050689 None:intergenic 25.0%
! CCACAAATAATGTTAAAGAT+TGG - Chr7:15050667-15050686 MsG0780036852.01.T01:CDS 25.0%
! CTTCAAAATCCATATTATCA+AGG + Chr7:15049202-15049221 None:intergenic 25.0%
! GGAATTAGAATTGAATCTTA+TGG + Chr7:15049923-15049942 None:intergenic 25.0%
! GGGTATATGAATATAAATAG+CGG + Chr7:15049414-15049433 None:intergenic 25.0%
! GGTATATGAATATAAATAGC+GGG + Chr7:15049413-15049432 None:intergenic 25.0%
! TACGTTAAAGCAATTTGAAT+TGG - Chr7:15050731-15050750 MsG0780036852.01.T01:CDS 25.0%
! TCAAATTGCTTTAACGTAAT+TGG + Chr7:15050729-15050748 None:intergenic 25.0%
! TCAATGAACAAATGGAAATT+AGG - Chr7:15047574-15047593 MsG0780036852.01.T01:intron 25.0%
! TGGAAATGAATTGAATAAGA+TGG + Chr7:15049949-15049968 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - Chr7:15048840-15048859 MsG0780036852.01.T01:intron 25.0%
!! ACAGTTATGAAGGTAATTTT+TGG + Chr7:15048737-15048756 None:intergenic 25.0%
!! AGTTATGAAGGTAATTTTTG+GGG + Chr7:15048735-15048754 None:intergenic 25.0%
!! AGTTTACAAAAAGCATATTG+AGG - Chr7:15050566-15050585 MsG0780036852.01.T01:intron 25.0%
!! CAATAATAGTTTGGAACTAT+TGG - Chr7:15047546-15047565 MsG0780036852.01.T01:intron 25.0%
!! CAGTTATGAAGGTAATTTTT+GGG + Chr7:15048736-15048755 None:intergenic 25.0%
!!! AGACCTTTTTTTCTTGATTT+TGG + Chr7:15047237-15047256 None:intergenic 25.0%
!!! ATATTTTGACATCCATTTGA+TGG - Chr7:15048787-15048806 MsG0780036852.01.T01:intron 25.0%
!!! CTTTTAAAAAAAATTCCGCT+GGG - Chr7:15048532-15048551 MsG0780036852.01.T01:intron 25.0%
!!! TAATTGACCCATTTTTTAGT+AGG - Chr7:15048651-15048670 MsG0780036852.01.T01:intron 25.0%
!!! TCGTTTTAATTTTTTAGCTC+GGG + Chr7:15049509-15049528 None:intergenic 25.0%
!!! TCTTTTAAAAAAAATTCCGC+TGG - Chr7:15048531-15048550 MsG0780036852.01.T01:intron 25.0%
!!! TGTTAGATTTTTTCGAAGAA+GGG - Chr7:15048970-15048989 MsG0780036852.01.T01:intron 25.0%
!!! TTGTTAGATTTTTTCGAAGA+AGG - Chr7:15048969-15048988 MsG0780036852.01.T01:intron 25.0%
!!! TTTTAAAAAAAATTCCGCTG+GGG - Chr7:15048533-15048552 MsG0780036852.01.T01:intron 25.0%
AAAGGAAACAAATTCATCAC+TGG + Chr7:15049969-15049988 None:intergenic 30.0%
ACTCATCTCCTACTAAAAAA+TGG + Chr7:15048662-15048681 None:intergenic 30.0%
ATCAAGAAAAAAAGGTCTTC+TGG - Chr7:15047239-15047258 MsG0780036852.01.T01:CDS 30.0%
ATTACCTTCATAACTGTCAT+TGG - Chr7:15048740-15048759 MsG0780036852.01.T01:intron 30.0%
CTCATCTCCTACTAAAAAAT+GGG + Chr7:15048661-15048680 None:intergenic 30.0%
GAGTAGCTAAAGAGTTAATA+AGG - Chr7:15048140-15048159 MsG0780036852.01.T01:intron 30.0%
GGAGATAAAGAAAGTAATTC+AGG + Chr7:15050708-15050727 None:intergenic 30.0%
GTAATATTATCAATGCTTCC+CGG - Chr7:15049282-15049301 MsG0780036852.01.T01:intron 30.0%
TAAAGATTGGGACAATTTGA+AGG - Chr7:15050680-15050699 MsG0780036852.01.T01:CDS 30.0%
TAACACATATTGGACTTGAT+GGG - Chr7:15050637-15050656 MsG0780036852.01.T01:CDS 30.0%
TATACCAATGACAGTTATGA+AGG + Chr7:15048747-15048766 None:intergenic 30.0%
TATTATCAAGGTGCATATCA+CGG + Chr7:15049190-15049209 None:intergenic 30.0%
TATTCTTGGGCTATGTAATT+GGG + Chr7:15049868-15049887 None:intergenic 30.0%
TCTAATTCAAGTGTGGAATT+AGG - Chr7:15047040-15047059 MsG0780036852.01.T01:CDS 30.0%
TTATTCTTGGGCTATGTAAT+TGG + Chr7:15049869-15049888 None:intergenic 30.0%
! AGAGCAAACATTTTATCACA+TGG - Chr7:15048336-15048355 MsG0780036852.01.T01:intron 30.0%
! TAGTTCTTCCTTTTTCTTTC+AGG - Chr7:15047011-15047030 MsG0780036852.01.T01:CDS 30.0%
! TGATATGCACCTTGATAATA+TGG - Chr7:15049190-15049209 MsG0780036852.01.T01:intron 30.0%
!! AAACGTTGAAATAGCTTTAG+AGG + Chr7:15047122-15047141 None:intergenic 30.0%
!! AGGCATAATTTGTTAGAAGT+CGG - Chr7:15049022-15049041 MsG0780036852.01.T01:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + Chr7:15048925-15048944 None:intergenic 30.0%
!!! GTTTTTCTATTGGATTGGTT+CGG + Chr7:15049669-15049688 None:intergenic 30.0%
!!! TGTTTTTTTTCAACTGTCGT+CGG - Chr7:15048410-15048429 MsG0780036852.01.T01:intron 30.0%
AAAATAATAATGCACGTGCC+TGG - Chr7:15050381-15050400 MsG0780036852.01.T01:intron 35.0%
AAAGCAATTTGAATTGGCCA+TGG - Chr7:15050737-15050756 MsG0780036852.01.T01:CDS 35.0%
AACCAACGAGTTTGTGAAAA+AGG - Chr7:15047647-15047666 MsG0780036852.01.T01:intron 35.0%
AACGACGATTAACTGTCATT+GGG - Chr7:15048504-15048523 MsG0780036852.01.T01:intron 35.0%
AAGAGTTATCAATGAGTGGT+TGG + Chr7:15050776-15050795 None:intergenic 35.0%
AGAGAAAAAAAGGAAGAGAG+AGG - Chr7:15048863-15048882 MsG0780036852.01.T01:intron 35.0%
ATATTGATGCAACTTTCTCC+TGG + Chr7:15047944-15047963 None:intergenic 35.0%
ATGGAAATTAGGTAGAGATG+TGG - Chr7:15047585-15047604 MsG0780036852.01.T01:intron 35.0%
ATGGAACCAGATATGGAAAT+AGG - Chr7:15050591-15050610 MsG0780036852.01.T01:intron 35.0%
ATGTGTATTAGAGACGATGA+AGG + Chr7:15047897-15047916 None:intergenic 35.0%
ATTATCAAGGTGCATATCAC+GGG + Chr7:15049189-15049208 None:intergenic 35.0%
CACAAAAGATGCTCTTTACT+CGG - Chr7:15049235-15049254 MsG0780036852.01.T01:intron 35.0%
CACTTCTAACTCTCTATGTT+CGG - Chr7:15047966-15047985 MsG0780036852.01.T01:intron 35.0%
CGAAAAGACATAACTGAAGT+CGG - Chr7:15049260-15049279 MsG0780036852.01.T01:intron 35.0%
CGTAGAGATGAATATGAACT+TGG + Chr7:15047708-15047727 None:intergenic 35.0%
GTAACACATATTGGACTTGA+TGG - Chr7:15050636-15050655 MsG0780036852.01.T01:CDS 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - Chr7:15048920-15048939 MsG0780036852.01.T01:intron 35.0%
GTGAAGCATGTAACACATAT+TGG - Chr7:15050627-15050646 MsG0780036852.01.T01:CDS 35.0%
GTTAGAATCTACTCTTGAGT+TGG + Chr7:15048061-15048080 None:intergenic 35.0%
TATTCATCATTCTTGCGGTT+TGG + Chr7:15049826-15049845 None:intergenic 35.0%
TCAACAAAGTTGCCATCAAA+TGG + Chr7:15048802-15048821 None:intergenic 35.0%
TGAATCTTATGGTGCAACAA+TGG + Chr7:15049912-15049931 None:intergenic 35.0%
TGGAACCAGATATGGAAATA+GGG - Chr7:15050592-15050611 MsG0780036852.01.T01:intron 35.0%
TGGGCATATCAATGAACAAA+TGG - Chr7:15047566-15047585 MsG0780036852.01.T01:intron 35.0%
TTCAACCATCTGATAGCAAA+CGG - Chr7:15047798-15047817 MsG0780036852.01.T01:intron 35.0%
! AACATGAAGCTTTTGAGCTA+GGG - Chr7:15049633-15049652 MsG0780036852.01.T01:intron 35.0%
! AGATAAAAAAGCATGCGGTT+TGG + Chr7:15050246-15050265 None:intergenic 35.0%
! CAAAAAGCATATTGAGGAGA+TGG - Chr7:15050572-15050591 MsG0780036852.01.T01:intron 35.0%
! CGACTTCAGTTATGTCTTTT+CGG + Chr7:15049262-15049281 None:intergenic 35.0%
! GACTTCAGTTATGTCTTTTC+GGG + Chr7:15049261-15049280 None:intergenic 35.0%
! TAACATGAAGCTTTTGAGCT+AGG - Chr7:15049632-15049651 MsG0780036852.01.T01:intron 35.0%
! TATGGAAATAGGGTATCCAA+CGG - Chr7:15050602-15050621 MsG0780036852.01.T01:intron 35.0%
!!! ACTCGTTGGTTGAGTTTTTT+AGG + Chr7:15047638-15047657 None:intergenic 35.0%
CAAACCAAACCAAACCAATG+CGG + Chr7:15050188-15050207 None:intergenic 40.0%
GAACGACGATTAACTGTCAT+TGG - Chr7:15048503-15048522 MsG0780036852.01.T01:intron 40.0%
GAAGCACACCTGAAAGAAAA+AGG + Chr7:15047022-15047041 None:intergenic 40.0%
GGAGAAGAGTTATCAATGAG+TGG + Chr7:15050780-15050799 None:intergenic 40.0%
GGATACCCTATTTCCATATC+TGG + Chr7:15050600-15050619 None:intergenic 40.0%
GTGTGCTTCTAATTCAAGTG+TGG - Chr7:15047033-15047052 MsG0780036852.01.T01:CDS 40.0%
GTGTTTAACAGCACTGTCAA+TGG - Chr7:15048474-15048493 MsG0780036852.01.T01:intron 40.0%
TCAAACATGCCGCAATAAAG+CGG + Chr7:15048030-15048049 None:intergenic 40.0%
TCGCTCTGTAGCTCAAAATA+GGG + Chr7:15050323-15050342 None:intergenic 40.0%
TGAAATGGATCGAGTCCAAT+GGG - Chr7:15048622-15048641 MsG0780036852.01.T01:intron 40.0%
TGTTTGCAAGGAAGACAAGA+AGG - Chr7:15047197-15047216 MsG0780036852.01.T01:CDS 40.0%
TTCGCTCTGTAGCTCAAAAT+AGG + Chr7:15050324-15050343 None:intergenic 40.0%
TTGAAATGGATCGAGTCCAA+TGG - Chr7:15048621-15048640 MsG0780036852.01.T01:intron 40.0%
! ACATGAAGCTTTTGAGCTAG+GGG - Chr7:15049634-15049653 MsG0780036852.01.T01:intron 40.0%
! TGGCGGTTTTTCTATTGGAT+TGG + Chr7:15049674-15049693 None:intergenic 40.0%
!! AAAAAGCATGCGGTTTGGTT+TGG + Chr7:15050241-15050260 None:intergenic 40.0%
!! ATCATTCTTGCGGTTTGGTT+TGG + Chr7:15049821-15049840 None:intergenic 40.0%
!! GGTTTCGGTTTGGATTAGTT+CGG + Chr7:15049698-15049717 None:intergenic 40.0%
!! GTCCTTTTTCACAAACTCGT+TGG + Chr7:15047652-15047671 None:intergenic 40.0%
!! GTTTGCTATCAGATGGTTGA+AGG + Chr7:15047799-15047818 None:intergenic 40.0%
!! TCCTTCATCAGCTTTTAGGA+TGG - Chr7:15047836-15047855 MsG0780036852.01.T01:intron 40.0%
!! TGGTTTGGTTTGGTTTGGTT+TGG - Chr7:15050191-15050210 MsG0780036852.01.T01:intron 40.0%
!!! CCTTCATCAGCTTTTAGGAT+GGG - Chr7:15047837-15047856 MsG0780036852.01.T01:intron 40.0%
!!! CGTTGGTTGAGTTTTTTAGG+AGG + Chr7:15047635-15047654 None:intergenic 40.0%
!!! TGCTTTTTTATCTCGCGGTT+TGG - Chr7:15050253-15050272 MsG0780036852.01.T01:intron 40.0%
AAACCGCAAAAAACCGCACT+TGG - Chr7:15049713-15049732 MsG0780036852.01.T01:intron 45.0%
AACACAACTTGAAGTGCGTC+TGG - Chr7:15048271-15048290 MsG0780036852.01.T01:intron 45.0%
AATTCCGCTGGGGTATGTTT+AGG - Chr7:15048543-15048562 MsG0780036852.01.T01:intron 45.0%
ACCATCTGATAGCAAACGGT+AGG - Chr7:15047802-15047821 MsG0780036852.01.T01:intron 45.0%
CAAACCAAACCAATGCGGAT+TGG + Chr7:15050183-15050202 None:intergenic 45.0%
CAGGCATACAGAGATTGATC+AGG - Chr7:15047294-15047313 MsG0780036852.01.T01:intron 45.0%
CCCATCCTAAAAGCTGATGA+AGG + Chr7:15047840-15047859 None:intergenic 45.0%
CCTAAAAGCTGATGAAGGAG+AGG + Chr7:15047835-15047854 None:intergenic 45.0%
CGCTCTGTAGCTCAAAATAG+GGG + Chr7:15050322-15050341 None:intergenic 45.0%
GAATTCATCCGAACCAAGTG+CGG + Chr7:15049729-15049748 None:intergenic 45.0%
GCAAAAAACCGCACTTGGTT+CGG - Chr7:15049718-15049737 MsG0780036852.01.T01:intron 45.0%
GGTCAATTAAAGTGGCCCAT+TGG + Chr7:15048640-15048659 None:intergenic 45.0%
GTTACATGCTTCACATCCGT+TGG + Chr7:15050621-15050640 None:intergenic 45.0%
TCAAGTAGTAGAGTGGGGAT+TGG + Chr7:15047921-15047940 None:intergenic 45.0%
TCCTGGTCAAGTAGTAGAGT+GGG + Chr7:15047927-15047946 None:intergenic 45.0%
TGAGGAGATGGAACCAGATA+TGG - Chr7:15050584-15050603 MsG0780036852.01.T01:intron 45.0%
TGGTGTCTCATACTCTTGCA+GGG - Chr7:15049366-15049385 MsG0780036852.01.T01:intron 45.0%
TGTATGCCTGCAGCTACATT+AGG + Chr7:15047284-15047303 None:intergenic 45.0%
TTCTCCTAAACATACCCCAG+CGG + Chr7:15048550-15048569 None:intergenic 45.0%
! CCGCGAGATAAAAAAGCATG+CGG + Chr7:15050251-15050270 None:intergenic 45.0%
! CCTCTCCTTCATCAGCTTTT+AGG - Chr7:15047832-15047851 MsG0780036852.01.T01:intron 45.0%
! GACTTTTGCAATGAACCGCA+CGG - Chr7:15049753-15049772 MsG0780036852.01.T01:intron 45.0%
! TCGGTTGGCGGTTTTTCTAT+TGG + Chr7:15049679-15049698 None:intergenic 45.0%
!! AATGAGTGGTTGGTGAGCTT+GGG + Chr7:15050766-15050785 None:intergenic 45.0%
!! CAAACCAATGCGGATTGGAT+TGG + Chr7:15050178-15050197 None:intergenic 45.0%
!! CAATCCAATCCGCATTGGTT+TGG - Chr7:15050176-15050195 MsG0780036852.01.T01:intron 45.0%
!! CAATCCGCATTGGTTTGGTT+TGG - Chr7:15050181-15050200 MsG0780036852.01.T01:intron 45.0%
!! CAATGCGGATTGGATTGGTT+CGG + Chr7:15050173-15050192 None:intergenic 45.0%
!! CGCATTGGTTTGGTTTGGTT+TGG - Chr7:15050186-15050205 MsG0780036852.01.T01:intron 45.0%
!! CGGTTTGGTTTGGTTTGGTT+CGG + Chr7:15049811-15049830 None:intergenic 45.0%
!! GCACTTGGTTCGGATGAATT+CGG - Chr7:15049728-15049747 MsG0780036852.01.T01:intron 45.0%
!! GTTTGGATTAGTTCGGTTGG+CGG + Chr7:15049691-15049710 None:intergenic 45.0%
!! TCGGTTTGGATTAGTTCGGT+TGG + Chr7:15049694-15049713 None:intergenic 45.0%
!! TCTTGCGGTTTGGTTTGGTT+TGG + Chr7:15049816-15049835 None:intergenic 45.0%
!! TTGGATTGGTTCGGTTTGTG+CGG + Chr7:15050164-15050183 None:intergenic 45.0%
!!! AGTGCGGTTTTTTGCGGTTT+CGG + Chr7:15049713-15049732 None:intergenic 45.0%
!!! CCGCATGCTTTTTTATCTCG+CGG - Chr7:15050248-15050267 MsG0780036852.01.T01:intron 45.0%
!!! GAACCAAGTGCGGTTTTTTG+CGG + Chr7:15049719-15049738 None:intergenic 45.0%
!!! GGTTTTTTGCGGTTTCGGTT+TGG + Chr7:15049708-15049727 None:intergenic 45.0%
!! TTTATTCAATTAAAATAATA+AGG - Chr7:15048213-15048232 MsG0780036852.01.T01:intron 5.0%
AACAAACTCCACCCGAGAGT+TGG + Chr7:15049330-15049349 None:intergenic 50.0%
ACTTGGACGAGAGCAAAGAC+CGG + Chr7:15049304-15049323 None:intergenic 50.0%
CCAAAGCCTAATGTAGCTGC+AGG - Chr7:15047275-15047294 MsG0780036852.01.T01:intron 50.0%
CCTGCAGCTACATTAGGCTT+TGG + Chr7:15047278-15047297 None:intergenic 50.0%
CCTGGTCAAGTAGTAGAGTG+GGG + Chr7:15047926-15047945 None:intergenic 50.0%
CGAACCAATCCAATCCGCAT+TGG - Chr7:15050171-15050190 MsG0780036852.01.T01:intron 50.0%
CGGACAACAATATGCGAGAG+GGG + Chr7:15048083-15048102 None:intergenic 50.0%
CGTCCAAGTATGCCAACTCT+CGG - Chr7:15049315-15049334 MsG0780036852.01.T01:intron 50.0%
CTCCTGGTCAAGTAGTAGAG+TGG + Chr7:15047928-15047947 None:intergenic 50.0%
GCAAACCAAACCAAACCGTG+CGG + Chr7:15049771-15049790 None:intergenic 50.0%
GCGGACAACAATATGCGAGA+GGG + Chr7:15048084-15048103 None:intergenic 50.0%
GCTGATGAAGGAGAGGCTTT+AGG + Chr7:15047828-15047847 None:intergenic 50.0%
GGTGTCTCATACTCTTGCAG+GGG - Chr7:15049367-15049386 MsG0780036852.01.T01:intron 50.0%
GTCCAAGTATGCCAACTCTC+GGG - Chr7:15049316-15049335 MsG0780036852.01.T01:intron 50.0%
GTGGTGTCTCATACTCTTGC+AGG - Chr7:15049365-15049384 MsG0780036852.01.T01:intron 50.0%
TGTTCGGCGACAAGCTAATG+TGG - Chr7:15049346-15049365 MsG0780036852.01.T01:intron 50.0%
TTGCAATGAACCGCACGGTT+TGG - Chr7:15049758-15049777 MsG0780036852.01.T01:intron 50.0%
! ACTCTCGGGTGGAGTTTGTT+CGG - Chr7:15049330-15049349 MsG0780036852.01.T01:intron 50.0%
! AGGTTGCTCATAGCCTTGCT+AGG + Chr7:15047615-15047634 None:intergenic 50.0%
! GGTTGCTCATAGCCTTGCTA+GGG + Chr7:15047614-15047633 None:intergenic 50.0%
!! ATGAACCGCACGGTTTGGTT+TGG - Chr7:15049763-15049782 MsG0780036852.01.T01:intron 50.0%
!! CAATGAGTGGTTGGTGAGCT+TGG + Chr7:15050767-15050786 None:intergenic 50.0%
!! GCACGGTTTGGTTTGGTTTG+CGG - Chr7:15049770-15049789 MsG0780036852.01.T01:intron 50.0%
!! GCATGCGGTTTGGTTTGGTT+CGG + Chr7:15050236-15050255 None:intergenic 50.0%
!! GCCTACCGTTTGCTATCAGA+TGG + Chr7:15047806-15047825 None:intergenic 50.0%
!! GCTCAAAATAGGGGTGTTCG+CGG + Chr7:15050313-15050332 None:intergenic 50.0%
!! GCTGTGTTGCCGCTTTATTG+CGG - Chr7:15048018-15048037 MsG0780036852.01.T01:intron 50.0%
CAAGTATGCCAACTCTCGGG+TGG - Chr7:15049319-15049338 MsG0780036852.01.T01:intron 55.0%
CACCCGAGAGTTGGCATACT+TGG + Chr7:15049321-15049340 None:intergenic 55.0%
CCCCACTCTACTACTTGACC+AGG - Chr7:15047923-15047942 MsG0780036852.01.T01:intron 55.0%
CGCGGACAACAATATGCGAG+AGG + Chr7:15048085-15048104 None:intergenic 55.0%
CTTGGACGAGAGCAAAGACC+GGG + Chr7:15049303-15049322 None:intergenic 55.0%
GTCTCATACTCTTGCAGGGG+AGG - Chr7:15049370-15049389 MsG0780036852.01.T01:intron 55.0%
TTGGTGAGCTTGGGTAGCCA+TGG + Chr7:15050757-15050776 None:intergenic 55.0%
! TGCTCATAGCCTTGCTAGGG+CGG + Chr7:15047611-15047630 None:intergenic 55.0%
!! AAATAGGGGTGTTCGCGGTG+CGG + Chr7:15050308-15050327 None:intergenic 55.0%
!! GTTCGCGGTGCGGTTTGGTT+CGG + Chr7:15050298-15050317 None:intergenic 60.0%
GAGATGTGGCCGCCCTAGCA+AGG - Chr7:15047599-15047618 MsG0780036852.01.T01:intron 65.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + Chr7:15050303-15050322 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 15046986 15050812 15046986 ID=MsG0780036852.01;Name=MsG0780036852.01
Chr7 mRNA 15046986 15050812 15046986 ID=MsG0780036852.01.T01;Parent=MsG0780036852.01;Name=MsG0780036852.01.T01;_AED=0.48;_eAED=0.56;_QI=0|0|0|1|0|0.5|2|0|159
Chr7 exon 15050621 15050812 15050621 ID=MsG0780036852.01.T01:exon:3074;Parent=MsG0780036852.01.T01
Chr7 exon 15046986 15047273 15046986 ID=MsG0780036852.01.T01:exon:3073;Parent=MsG0780036852.01.T01
Chr7 CDS 15050621 15050812 15050621 ID=MsG0780036852.01.T01:cds;Parent=MsG0780036852.01.T01
Chr7 CDS 15046986 15047273 15046986 ID=MsG0780036852.01.T01:cds;Parent=MsG0780036852.01.T01
Gene Sequence

>MsG0780036852.01.T01

ATGAGAAATCATATGGAGAGATTAGTAGTTCTTCCTTTTTCTTTCAGGTGTGCTTCTAATTCAAGTGTGGAATTAGGTGAACAAAAAGTGCAAAAACTAGATTCAAAAGACTCAATTGATTCAAGTAGTTTCTCCTCTAAAGCTATTTCAACGTTTCTATATTCATTCATTTTTCTTTCTTTAGTTATTGGAATGCATGTTTGTAATAATAGTTTGTTGACTTCAATTTATTTAGTTTACAAAAAGCATATTGAGGAGATGGAACCAGATATGGAAATAGGGTATCCAACGGATGTGAAGCATGTAACACATATTGGACTTGATGGGTCAACAACCACAAATAATGTTAAAGATTGGGACAATTTGAAGGCACCTGAATTACTTTCTTTATCTCCAATTACGTTAAAGCAATTTGAATTGGCCATGGCTACCCAAGCTCACCAACCACTCATTGATAACTCTTCTCCAAAATGTAATTAA
Protein sequence

>MsG0780036852.01.T01

MRNHMERLVVLPFSFRCASNSSVELGEQKVQKLDSKDSIDSSSFSSKAISTFLYSFIFLSLVIGMHVCNNSLLTSIYLVYKKHIEEMEPDMEIGYPTDVKHVTHIGLDGSTTTNNVKDWDNLKAPELLSLSPITLKQFELAMATQAHQPLIDNSSPKCN*