AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016264.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016264.01.T01 MTR_3g086610 80.952 399 1 2 1 324 1 399 0.0 639
MsG0380016264.01.T01 MTR_3g086610 79.282 362 0 2 1 287 1 362 0.0 563
MsG0380016264.01.T01 MTR_8g089815 67.254 397 55 3 1 323 1 396 0.0 550
MsG0380016264.01.T01 MTR_7g033300 72.148 298 54 2 43 311 80 377 3.47e-164 463
MsG0380016264.01.T01 MTR_2g094650 57.180 383 91 3 1 311 1 382 1.47e-162 459
MsG0380016264.01.T01 MTR_8g089820 70.192 312 64 2 41 324 79 389 2.15e-162 458
MsG0380016264.01.T01 MTR_2g094650 57.031 384 91 4 1 311 1 383 2.39e-161 456
MsG0380016264.01.T01 MTR_4g058800 67.532 308 68 2 32 311 62 365 3.64e-158 447
MsG0380016264.01.T01 MTR_2g012570 48.496 266 98 7 55 281 78 343 5.33e-80 247
MsG0380016264.01.T01 MTR_2g012570 47.426 272 104 7 49 281 46 317 6.45e-80 246
MsG0380016264.01.T01 MTR_2g012570 48.496 266 98 7 55 281 78 343 4.14e-79 246
MsG0380016264.01.T01 MTR_2g012570 48.496 266 98 7 55 281 52 317 4.22e-79 246
MsG0380016264.01.T01 MTR_1g078290 39.710 345 151 7 3 290 11 355 5.78e-77 240
MsG0380016264.01.T01 MTR_1g078290 38.753 369 160 8 3 305 11 379 1.39e-76 240
MsG0380016264.01.T01 MTR_1g078290 39.710 345 151 7 3 290 11 355 3.43e-76 239
MsG0380016264.01.T01 MTR_4g090465 47.809 251 96 6 57 272 430 680 3.53e-72 237
MsG0380016264.01.T01 MTR_2g005330 44.528 265 111 6 51 279 76 340 2.51e-71 225
MsG0380016264.01.T01 MTR_2g005330 45.076 264 109 6 51 278 76 339 9.33e-71 225
MsG0380016264.01.T01 MTR_1g078290 39.542 306 129 6 3 252 11 316 1.04e-68 218
MsG0380016264.01.T01 MTR_2g005330 52.792 197 88 4 87 278 1 197 1.14e-67 212
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016264.01.T01 AT1G67850 65.714 385 54 2 17 323 1 385 0.0 516
MsG0380016264.01.T01 AT1G67850 65.714 385 54 2 17 323 17 401 0.0 516
MsG0380016264.01.T01 AT1G67850 65.714 385 54 2 17 323 17 401 0.0 516
MsG0380016264.01.T01 AT1G67850 65.714 385 54 2 17 323 17 401 0.0 516
MsG0380016264.01.T01 AT1G67850 65.714 385 54 2 17 323 17 401 0.0 516
MsG0380016264.01.T01 AT1G67850 65.714 385 54 2 17 323 17 401 0.0 516
MsG0380016264.01.T01 AT1G67850 65.714 385 54 2 17 323 17 401 0.0 516
MsG0380016264.01.T01 AT2G28310 64.130 368 74 2 1 310 1 368 8.35e-179 499
MsG0380016264.01.T01 AT2G28310 64.130 368 74 2 1 310 1 368 8.35e-179 499
MsG0380016264.01.T01 AT2G28310 64.130 368 74 2 1 310 1 368 8.35e-179 499
MsG0380016264.01.T01 AT3G27470 60.051 393 74 3 11 320 2 394 5.91e-173 485
MsG0380016264.01.T01 AT3G27470 60.051 393 74 3 11 320 2 394 5.91e-173 485
MsG0380016264.01.T01 AT3G27470 60.051 393 74 3 11 320 2 394 5.91e-173 485
MsG0380016264.01.T01 AT3G27470 60.051 393 74 3 11 320 2 394 5.91e-173 485
MsG0380016264.01.T01 AT1G08040 62.500 376 76 3 1 311 1 376 1.62e-172 484
MsG0380016264.01.T01 AT1G08040 62.500 376 76 3 1 311 1 376 1.62e-172 484
MsG0380016264.01.T01 AT1G08040 62.500 376 76 3 1 311 1 376 1.62e-172 484
MsG0380016264.01.T01 AT3G27470 60.051 393 74 3 11 320 2 394 1.84e-172 484
MsG0380016264.01.T01 AT1G08040 62.234 376 73 4 1 311 1 372 1.61e-170 478
MsG0380016264.01.T01 AT3G26440 62.707 362 89 3 6 322 10 370 2.57e-170 478
MsG0380016264.01.T01 AT1G13000 58.040 398 84 3 5 324 9 401 4.84e-169 476
MsG0380016264.01.T01 AT1G13000 58.040 398 84 3 5 324 9 401 4.84e-169 476
MsG0380016264.01.T01 AT1G13000 58.040 398 84 3 5 324 9 401 4.84e-169 476
MsG0380016264.01.T01 AT1G13000 58.040 398 84 3 5 324 9 401 4.84e-169 476
MsG0380016264.01.T01 AT3G26440 58.808 386 89 3 6 322 33 417 2.44e-167 472
MsG0380016264.01.T01 AT3G26440 58.808 386 89 3 6 322 33 417 4.50e-167 471
MsG0380016264.01.T01 AT3G26440 58.808 386 89 3 6 322 10 394 5.76e-167 470
MsG0380016264.01.T01 AT3G26440 58.808 386 89 3 6 322 10 394 5.76e-167 470
MsG0380016264.01.T01 AT1G24570 59.673 367 87 4 17 322 19 385 1.89e-156 443
MsG0380016264.01.T01 AT3G26440 58.989 356 77 2 6 292 10 365 2.73e-153 434
MsG0380016264.01.T01 AT1G24570 59.167 360 93 4 17 322 19 378 4.19e-151 429
MsG0380016264.01.T01 AT1G13000 57.055 326 62 2 5 252 9 334 6.84e-131 377
MsG0380016264.01.T01 AT4G12840 42.515 334 139 9 1 281 8 341 3.74e-84 259
MsG0380016264.01.T01 AT4G12840 43.293 328 133 9 7 281 14 341 5.46e-84 259
MsG0380016264.01.T01 AT4G12840 55.024 209 86 5 81 281 39 247 3.21e-78 241
MsG0380016264.01.T01 AT1G11170 44.891 274 114 5 55 291 83 356 7.04e-75 235
MsG0380016264.01.T01 AT1G61240 52.582 213 96 4 83 290 73 285 1.70e-74 233
MsG0380016264.01.T01 AT4G18530 46.154 260 104 6 49 272 64 323 4.38e-74 233
MsG0380016264.01.T01 AT4G18530 46.154 260 104 6 49 272 69 328 4.38e-74 233
MsG0380016264.01.T01 AT1G11170 45.035 282 115 6 57 301 85 363 5.27e-74 234
MsG0380016264.01.T01 AT1G11170 45.035 282 115 6 57 301 85 363 5.27e-74 234
MsG0380016264.01.T01 AT1G11170 45.035 282 115 6 57 301 85 363 5.27e-74 234
MsG0380016264.01.T01 AT1G11170 45.035 282 115 6 57 301 85 363 5.27e-74 234
MsG0380016264.01.T01 AT1G11170 46.667 255 99 5 55 272 83 337 7.61e-74 231
MsG0380016264.01.T01 AT1G11170 46.667 255 99 5 55 272 83 337 7.61e-74 231
MsG0380016264.01.T01 AT1G61240 52.582 213 96 4 83 290 140 352 9.90e-74 234
MsG0380016264.01.T01 AT1G61240 52.582 213 96 4 83 290 140 352 9.90e-74 234
MsG0380016264.01.T01 AT1G61240 52.582 213 96 4 83 290 140 352 9.90e-74 234
MsG0380016264.01.T01 AT1G61240 52.582 213 96 4 83 290 140 352 9.90e-74 234
MsG0380016264.01.T01 AT1G61240 52.582 213 96 4 83 290 140 352 9.90e-74 234
MsG0380016264.01.T01 AT1G61240 52.582 213 96 4 83 290 140 352 9.90e-74 234
MsG0380016264.01.T01 AT1G61240 52.857 210 94 4 83 287 140 349 2.17e-73 231
MsG0380016264.01.T01 AT4G18530 45.339 236 94 5 49 249 69 304 1.77e-65 209
MsG0380016264.01.T01 AT1G11170 46.753 231 87 4 55 249 83 313 2.99e-65 209
MsG0380016264.01.T01 AT2G25905 46.411 209 58 5 17 171 19 227 9.73e-51 168
MsG0380016264.01.T01 AT1G11170 45.562 169 59 2 57 192 85 253 4.30e-43 149

Find 132 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATGACTATATATTTATA+TGG 0.213074 3:+81218600 MsG0380016264.01.T01:CDS
TTGCCATGTCAACCCTTTAT+TGG 0.257735 3:-81218800 None:intergenic
ACGCTGCACAAGGAGGTAAA+TGG 0.258388 3:-81218992 None:intergenic
CCCCTGCCATGGTGCTTTCC+CGG 0.260665 3:-81219681 None:intergenic
CAGGGAAGTTCCGAAATAAA+TGG 0.282809 3:+81217196 MsG0380016264.01.T01:exon
TCTGCTCCTCTTGGATTTGA+TGG 0.289728 3:-81217917 None:intergenic
TGCCATGTCAACCCTTTATT+GGG 0.303558 3:-81218799 None:intergenic
AAGCATATTTGTTTCTTATA+CGG 0.306033 3:+81217108 MsG0380016264.01.T01:five_prime_UTR
CCTGGTTTAGAACCCAATAA+AGG 0.308435 3:+81218787 MsG0380016264.01.T01:CDS
TTGTGTCTGGCATATGATTC+AGG 0.313499 3:+81219148 MsG0380016264.01.T01:CDS
TTACAGTAGAGGTTGCTTAT+TGG 0.317301 3:+81220189 MsG0380016264.01.T01:three_prime_UTR
ATGCAGGTTTGTTGAGATTA+TGG 0.320597 3:+81219097 MsG0380016264.01.T01:intron
TTCCTCCGACACCCCTCAGC+TGG 0.337553 3:+81216182 MsG0380016264.01.T01:five_prime_UTR
TTCTACATTGGATTTAAGTT+TGG 0.340726 3:-81220104 None:intergenic
GGCAGGTGAGGGAGAGATGT+AGG 0.349851 3:+81219856 MsG0380016264.01.T01:intron
AGATCTTTGTGTTGTGAGTT+TGG 0.350571 3:-81216069 None:intergenic
CGCTGCACAAGGAGGTAAAT+GGG 0.354183 3:-81218991 None:intergenic
ATCCTTCTATTTCATTATGA+TGG 0.372976 3:+81218307 MsG0380016264.01.T01:CDS
GTAACGGTACCCATTTATTT+CGG 0.381216 3:-81217206 None:intergenic
TTGCAGGGTAAAACTGAAAC+CGG 0.384720 3:+81219662 MsG0380016264.01.T01:intron
GGTAAACTTTCTGCTCCTCT+TGG 0.388659 3:-81217926 None:intergenic
GGCCATCATAATGAAATAGA+AGG 0.390690 3:-81218309 None:intergenic
GAGAAGCATGGCGTTGTGTC+TGG 0.390721 3:+81219135 MsG0380016264.01.T01:CDS
CATGCTTCTCGCGAGAATAC+TGG 0.396635 3:-81219122 None:intergenic
CAAGTGCAGGTACTTAAAAC+TGG 0.397978 3:+81218735 MsG0380016264.01.T01:intron
GTGCTCGCAAACAGACTAAA+TGG 0.402665 3:+81218383 MsG0380016264.01.T01:CDS
TCCTCCGACACCCCTCAGCT+GGG 0.405252 3:+81216183 MsG0380016264.01.T01:five_prime_UTR
AATAAGCCTCATAATTTCAC+TGG 0.409734 3:-81217370 None:intergenic
TAGAGTGACGGAGGAGAAAC+CGG 0.412831 3:+81218953 MsG0380016264.01.T01:intron
AACCGGGAAAGCACCATGGC+AGG 0.417235 3:+81219679 MsG0380016264.01.T01:CDS
TGTTCCCACACTAGGAAATC+AGG 0.418886 3:+81219542 MsG0380016264.01.T01:CDS
CATTTATTTCGGAACTTCCC+TGG 0.422469 3:-81217195 None:intergenic
TTTATTGGATGCAGTCCTAA+TGG 0.423254 3:+81217339 MsG0380016264.01.T01:intron
TCACTGGGTTTCCTACCATT+AGG 0.425173 3:-81217354 None:intergenic
CAGAAGAATGGAACCTTCAC+TGG 0.430195 3:-81216121 None:intergenic
CTGGTTTAGAACCCAATAAA+GGG 0.442489 3:+81218788 MsG0380016264.01.T01:CDS
ATTTATATGGGATGAAGACT+TGG 0.443996 3:+81218613 MsG0380016264.01.T01:CDS
TTTAAGTTTGGTCCCTAGCT+AGG 0.457624 3:-81220092 None:intergenic
GGAGGTGAGTCTACGCATAA+TGG 0.458616 3:-81220018 None:intergenic
GCTTGACTTGTACACAGTTA+TGG 0.462096 3:+81219992 MsG0380016264.01.T01:three_prime_UTR
CATATAAATATATAGTCATA+TGG 0.467190 3:-81218599 None:intergenic
TCATATGGTGCCACAATGTC+AGG 0.467804 3:-81218584 None:intergenic
TTCACCATTCATCAACTAGA+AGG 0.471634 3:-81217137 None:intergenic
AAAATTGTAGAAGAAGAAGA+AGG 0.473103 3:+81215978 None:intergenic
CTTGGCATTGCAGAATGACT+TGG 0.475324 3:+81219263 MsG0380016264.01.T01:intron
TTGGAGTTGTCGATGCTCAA+TGG 0.480149 3:+81219505 MsG0380016264.01.T01:CDS
TAGCCTGCACATGAGAAGAT+TGG 0.483409 3:+81219486 MsG0380016264.01.T01:intron
ACCGGGAAAGCACCATGGCA+GGG 0.486609 3:+81219680 MsG0380016264.01.T01:CDS
CCGGGAAAGCACCATGGCAG+GGG 0.491082 3:+81219681 MsG0380016264.01.T01:CDS
ACTGGTGAAGAAGCATGGCC+TGG 0.491574 3:+81218753 MsG0380016264.01.T01:CDS
CGACTCAGCTTCAACAATGC+CGG 0.491664 3:-81217951 None:intergenic
GGCCTGGAGATTTCACAGCC+TGG 0.496813 3:+81218769 MsG0380016264.01.T01:CDS
ATGATGGCCGAGCTAATGAA+TGG 0.499945 3:+81218323 MsG0380016264.01.T01:CDS
CCTTTATTGGGTTCTAAACC+AGG 0.501314 3:-81218787 None:intergenic
TGAAGGTTCCATTCTTCTGC+CGG 0.503865 3:+81216125 MsG0380016264.01.T01:five_prime_UTR
AGGGAAGTTCCGAAATAAAT+GGG 0.505212 3:+81217197 MsG0380016264.01.T01:exon
GACTCAGCTTCAACAATGCC+GGG 0.509378 3:-81217950 None:intergenic
GGTGAGGGAGAGATGTAGGA+AGG 0.509559 3:+81219860 MsG0380016264.01.T01:intron
ATTAATATGTCTAATTCCAC+TGG 0.509862 3:+81219948 MsG0380016264.01.T01:CDS
TCTTAAGATACACACCTCAC+TGG 0.511552 3:-81218005 None:intergenic
GAACATGCATATTTCAAGTC+CGG 0.512196 3:+81219918 MsG0380016264.01.T01:CDS
AAGAACAAGTGACACATCTC+AGG 0.513368 3:-81220220 None:intergenic
ACTCCAATCTTCTCATGTGC+AGG 0.516783 3:-81219489 None:intergenic
ATATGACTATATATTTATAT+GGG 0.518689 3:+81218601 MsG0380016264.01.T01:CDS
CATGAAATAGAGTCCTAGCT+AGG 0.518879 3:+81220079 MsG0380016264.01.T01:three_prime_UTR
CGGCATTGTTGAAGCTGAGT+CGG 0.519485 3:+81217952 MsG0380016264.01.T01:CDS
AATGACTTGGTCCATGGATG+GGG 0.521935 3:+81219276 MsG0380016264.01.T01:CDS
TGTCGGAGGAACGTGGAAGA+AGG 0.523573 3:-81216170 None:intergenic
TTTACCTGATTTCCTAGTGT+GGG 0.526887 3:-81219546 None:intergenic
GGAAACCCAGTGAAATTATG+AGG 0.530878 3:+81217364 MsG0380016264.01.T01:CDS
AACCAGGCTGTGAAATCTCC+AGG 0.532638 3:-81218771 None:intergenic
CTTAAGATACACACCTCACT+GGG 0.536039 3:-81218004 None:intergenic
CAAAATCAAGTCCCCATCCA+TGG 0.537352 3:-81219287 None:intergenic
GATACCTTCTAGTTGATGAA+TGG 0.538994 3:+81217133 MsG0380016264.01.T01:five_prime_UTR
TCCAACATTGTCATTAACAA+AGG 0.539794 3:+81217443 MsG0380016264.01.T01:CDS
TCAGCTCTCAAGTTCTACAT+TGG 0.542981 3:-81220116 None:intergenic
GCATATTTCAAGTCCGGCGG+TGG 0.544222 3:+81219924 MsG0380016264.01.T01:CDS
ATTTACCTGATTTCCTAGTG+TGG 0.551215 3:-81219547 None:intergenic
AAACCCCAGCTGAGGGGTGT+CGG 0.552127 3:-81216187 None:intergenic
AAATTGTAGAAGAAGAAGAA+GGG 0.552455 3:+81215979 None:intergenic
GGGAGAGATGTAGGAAGGAG+TGG 0.553738 3:+81219865 MsG0380016264.01.T01:CDS
ACCTTTGTTAATGACAATGT+TGG 0.557482 3:-81217444 None:intergenic
GAATGACTTGGTCCATGGAT+GGG 0.558080 3:+81219275 MsG0380016264.01.T01:intron
CCTCCGACACCCCTCAGCTG+GGG 0.559406 3:+81216184 MsG0380016264.01.T01:five_prime_UTR
TTGCAGAATGACTTGGTCCA+TGG 0.561994 3:+81219270 MsG0380016264.01.T01:intron
TGCAGTTAGAAGATGTGTTG+AGG 0.565260 3:+81219308 MsG0380016264.01.T01:CDS
TGTCTCATAAATTACAGTAG+AGG 0.570186 3:+81220178 MsG0380016264.01.T01:three_prime_UTR
CACCAAGGTGTTCCCACACT+AGG 0.571590 3:+81219534 MsG0380016264.01.T01:CDS
TGAGTTTGAATGGTCAAAGA+AGG 0.573343 3:+81218348 MsG0380016264.01.T01:CDS
CAGTATTCTCGCGAGAAGCA+TGG 0.573602 3:+81219123 MsG0380016264.01.T01:CDS
AGAATGACTTGGTCCATGGA+TGG 0.574042 3:+81219274 MsG0380016264.01.T01:intron
TTGGATGCAGTCCTAATGGT+AGG 0.577148 3:+81217343 MsG0380016264.01.T01:intron
ACTCATCCCATTCATTAGCT+CGG 0.581632 3:-81218330 None:intergenic
ATGAATGGGATGAGTTTGAA+TGG 0.582732 3:+81218338 MsG0380016264.01.T01:CDS
TTTATATGGGATGAAGACTT+GGG 0.588977 3:+81218614 MsG0380016264.01.T01:CDS
CCCCAGCTGAGGGGTGTCGG+AGG 0.589695 3:-81216184 None:intergenic
ATAAGCCTCATAATTTCACT+GGG 0.590143 3:-81217369 None:intergenic
AGAGTGACGGAGGAGAAACC+GGG 0.592731 3:+81218954 MsG0380016264.01.T01:intron
GGAGCAGAAAGTTTACCTCC+CGG 0.596329 3:+81217932 MsG0380016264.01.T01:CDS
CGCTAACCGACTCTGAAACA+TGG 0.596779 3:-81219889 None:intergenic
TTGTGAGTTTGGAACAAGGA+GGG 0.598179 3:-81216058 None:intergenic
TTAAAACTGGTGAAGAAGCA+TGG 0.599811 3:+81218748 MsG0380016264.01.T01:CDS
ATGAAATAGAGTCCTAGCTA+GGG 0.599839 3:+81220080 MsG0380016264.01.T01:three_prime_UTR
CGGGAAAGCACCATGGCAGG+GGG 0.604779 3:+81219682 MsG0380016264.01.T01:CDS
AGTGGACCATGTTTCAGAGT+CGG 0.607117 3:+81219883 MsG0380016264.01.T01:CDS
ATTATCAGACCTGCGAGTAA+CGG 0.610887 3:-81217222 None:intergenic
AAATGGGTACCGTTACTCGC+AGG 0.611248 3:+81217213 MsG0380016264.01.T01:exon
GAGTTTGGAACAAGGAGGGA+GGG 0.611388 3:-81216054 None:intergenic
AACCCAATAAAGGGTTGACA+TGG 0.618140 3:+81218797 MsG0380016264.01.T01:CDS
GCTTCCTATAAAACCAGTGA+AGG 0.619411 3:+81216108 MsG0380016264.01.T01:five_prime_UTR
ATTTCTGCATCCTGACATTG+TGG 0.619915 3:+81218574 MsG0380016264.01.T01:CDS
AGACATATTAATACCACCGC+CGG 0.622372 3:-81219937 None:intergenic
TGATGGCCGAGCTAATGAAT+GGG 0.623524 3:+81218324 MsG0380016264.01.T01:CDS
TGAGTTTGGAACAAGGAGGG+AGG 0.624086 3:-81216055 None:intergenic
GCTGCACAAGGAGGTAAATG+GGG 0.631284 3:-81218990 None:intergenic
GCAGTTACTTACGCTGCACA+AGG 0.640937 3:-81219002 None:intergenic
ACGTGGAAGAAGGTGAAGAA+CGG 0.648166 3:-81216160 None:intergenic
CTGAAACCGGGAAAGCACCA+TGG 0.651275 3:+81219675 MsG0380016264.01.T01:CDS
TGTGTTGTGAGTTTGGAACA+AGG 0.653209 3:-81216062 None:intergenic
TGCAGGGTAAAACTGAAACC+GGG 0.654503 3:+81219663 MsG0380016264.01.T01:intron
TTCCTAGTGTGGGAACACCT+TGG 0.656990 3:-81219536 None:intergenic
TGAGGGGTGTCGGAGGAACG+TGG 0.658428 3:-81216177 None:intergenic
CATGCATATTTCAAGTCCGG+CGG 0.674373 3:+81219921 MsG0380016264.01.T01:CDS
TGACGGAGGAGAAACCGGGA+TGG 0.686924 3:+81218958 MsG0380016264.01.T01:CDS
CTGCACAAGGAGGTAAATGG+GGG 0.692874 3:-81218989 None:intergenic
AAAAGAAAACCCCAGCTGAG+GGG 0.696223 3:-81216193 None:intergenic
ATTGTGGGGCAAACCCAGTG+AGG 0.712457 3:+81217991 MsG0380016264.01.T01:CDS
TGGGTTCCATCAAATCCAAG+AGG 0.719624 3:+81217911 MsG0380016264.01.T01:CDS
GCTCAATGGATTGTTCACCA+AGG 0.733701 3:+81219519 MsG0380016264.01.T01:CDS
GTTACTTACGCTGCACAAGG+AGG 0.742418 3:-81218999 None:intergenic
TCAGCTTCAACAATGCCGGG+AGG 0.767152 3:-81217947 None:intergenic
GTTGTGAGTTTGGAACAAGG+AGG 0.767505 3:-81216059 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATATATTTCAAAAAAA+GGG - Chr3:81220044-81220063 None:intergenic 10.0%
!! ATATGACTATATATTTATAT+GGG + Chr3:81218601-81218620 MsG0380016264.01.T01:CDS 10.0%
!! TAAGAATATATTTCAAAAAA+AGG - Chr3:81220045-81220064 None:intergenic 10.0%
!!! ATATTGTTTTATATAATACT+GGG + Chr3:81217819-81217838 MsG0380016264.01.T01:intron 10.0%
!!! ATCTTTAATGTTTTTTTTTT+GGG + Chr3:81218685-81218704 MsG0380016264.01.T01:intron 10.0%
!!! TATCTTTAATGTTTTTTTTT+TGG + Chr3:81218684-81218703 MsG0380016264.01.T01:intron 10.0%
!! AAGTTTGATATACAATAATA+AGG - Chr3:81219579-81219598 None:intergenic 15.0%
!! AATATGATAACAATCAATTA+TGG - Chr3:81218513-81218532 None:intergenic 15.0%
!! AGAATATATTTCAAAAAAAG+GGG - Chr3:81220043-81220062 None:intergenic 15.0%
!! AGTTTGATATACAATAATAA+GGG - Chr3:81219578-81219597 None:intergenic 15.0%
!! ATAAATTTATTCAAAGTTGA+AGG - Chr3:81216334-81216353 None:intergenic 15.0%
!! ATATATCAATAATAACTTGA+AGG - Chr3:81216360-81216379 None:intergenic 15.0%
!! CATATAAATATATAGTCATA+TGG - Chr3:81218602-81218621 None:intergenic 15.0%
!! CATATGACTATATATTTATA+TGG + Chr3:81218600-81218619 MsG0380016264.01.T01:CDS 15.0%
!!! AGTTAATGATAATCTATTTT+TGG - Chr3:81216471-81216490 None:intergenic 15.0%
!!! CAAGTTTTTTTTATGATAAT+TGG + Chr3:81216409-81216428 MsG0380016264.01.T01:intron 15.0%
!!! GATATTGTTTTATATAATAC+TGG + Chr3:81217818-81217837 MsG0380016264.01.T01:intron 15.0%
!!! TGTGACAATTTTTTTTTTAT+TGG + Chr3:81217324-81217343 MsG0380016264.01.T01:intron 15.0%
!!! TTTTAGTTGTTTTTTGTTAT+TGG + Chr3:81217523-81217542 MsG0380016264.01.T01:intron 15.0%
!! AATAATTATCCCTTATTCTT+AGG + Chr3:81217000-81217019 MsG0380016264.01.T01:intron 20.0%
!! AATTACAATTGTATAACTCT+TGG + Chr3:81219245-81219264 MsG0380016264.01.T01:intron 20.0%
!! ATCATTAAACAACTAATTAG+TGG - Chr3:81219208-81219227 None:intergenic 20.0%
!! CATTGATACATAATTGATAT+GGG + Chr3:81217784-81217803 MsG0380016264.01.T01:intron 20.0%
!! GAATATATTTCAAAAAAAGG+GGG - Chr3:81220042-81220061 None:intergenic 20.0%
!! GTTTGATATACAATAATAAG+GGG - Chr3:81219577-81219596 None:intergenic 20.0%
!! TATGATAATTGGTACAATTA+TGG + Chr3:81216420-81216439 MsG0380016264.01.T01:intron 20.0%
!! TCATTAAACAACTAATTAGT+GGG - Chr3:81219207-81219226 None:intergenic 20.0%
!! TCATTGATACATAATTGATA+TGG + Chr3:81217783-81217802 MsG0380016264.01.T01:intron 20.0%
!! TTTATATAATACTGGGAAAA+TGG + Chr3:81217826-81217845 MsG0380016264.01.T01:intron 20.0%
!!! AAATTTTCCTTTTATTTGCA+GGG + Chr3:81219647-81219666 MsG0380016264.01.T01:intron 20.0%
!!! AAGCATATTTGTTTCTTATA+CGG + Chr3:81217108-81217127 MsG0380016264.01.T01:five_prime_UTR 20.0%
!!! AATATGAATCTTTTCTTTCA+TGG + Chr3:81216527-81216546 MsG0380016264.01.T01:intron 20.0%
! AAAAAAAAATTGTCACACAG+TGG - Chr3:81217321-81217340 None:intergenic 25.0%
! ATCCTTCTATTTCATTATGA+TGG + Chr3:81218307-81218326 MsG0380016264.01.T01:CDS 25.0%
! ATTAATATGTCTAATTCCAC+TGG + Chr3:81219948-81219967 MsG0380016264.01.T01:CDS 25.0%
! GTATTCTGTCATCATTATTA+AGG + Chr3:81217735-81217754 MsG0380016264.01.T01:intron 25.0%
! GTGTAATTTATAGCCATATT+AGG - Chr3:81218042-81218061 None:intergenic 25.0%
! GTTTAATATACTTCGAATGT+TGG - Chr3:81219758-81219777 None:intergenic 25.0%
! TACATTGAAGAAAGATATAC+AGG + Chr3:81217627-81217646 MsG0380016264.01.T01:intron 25.0%
! TGTAGAGAAACAACAAAATA+AGG - Chr3:81217887-81217906 None:intergenic 25.0%
! TGTATCTTAAGACAGTTTAT+AGG + Chr3:81218016-81218035 MsG0380016264.01.T01:intron 25.0%
! TTAACATAAACTAGCATATG+TGG - Chr3:81217290-81217309 None:intergenic 25.0%
! TTGCTTCAACTTATTTATGA+AGG - Chr3:81216891-81216910 None:intergenic 25.0%
!! ACTTTTATTGGAGTAGTTTT+TGG + Chr3:81217399-81217418 MsG0380016264.01.T01:CDS 25.0%
!! ATTCTCATATTGAGGATTTT+AGG + Chr3:81216926-81216945 MsG0380016264.01.T01:intron 25.0%
!! CTTATTGTGACAACTTTTAT+TGG + Chr3:81217387-81217406 MsG0380016264.01.T01:CDS 25.0%
!! TTCTACATTGGATTTAAGTT+TGG - Chr3:81220107-81220126 None:intergenic 25.0%
!! TTTTTACTTGATATGTGACT+TGG + Chr3:81219718-81219737 MsG0380016264.01.T01:intron 25.0%
!!! ATAGCAACTCACTTTTAATT+AGG - Chr3:81218489-81218508 None:intergenic 25.0%
!!! CAAATTTTCCTTTTATTTGC+AGG + Chr3:81219646-81219665 MsG0380016264.01.T01:intron 25.0%
!!! TGTATTAGTCTTGTATTATC+TGG + Chr3:81219033-81219052 MsG0380016264.01.T01:intron 25.0%
!!! TTAACTAAGTTGACATTTTC+AGG + Chr3:81218101-81218120 MsG0380016264.01.T01:intron 25.0%
!!! TTAGTGGGAATCTTTTAAAA+CGG - Chr3:81219192-81219211 None:intergenic 25.0%
!!! TTTCAGTTTTTTACTTTCTC+CGG - Chr3:81219412-81219431 None:intergenic 25.0%
AAATCCTCTGTAAACAATGA+AGG - Chr3:81218083-81218102 None:intergenic 30.0%
AACTCATAATCAAAGCTCAT+AGG - Chr3:81219810-81219829 None:intergenic 30.0%
AATAAGCCTCATAATTTCAC+TGG - Chr3:81217373-81217392 None:intergenic 30.0%
ACAAGACTAATACATTACAC+CGG - Chr3:81219027-81219046 None:intergenic 30.0%
ACCTACCAAATTAACTCAAA+AGG - Chr3:81216652-81216671 None:intergenic 30.0%
ACCTTTGTTAATGACAATGT+TGG - Chr3:81217447-81217466 None:intergenic 30.0%
ATAAGCCTCATAATTTCACT+GGG - Chr3:81217372-81217391 None:intergenic 30.0%
ATTTATATGGGATGAAGACT+TGG + Chr3:81218613-81218632 MsG0380016264.01.T01:CDS 30.0%
CATATCAAATACTCACTCTT+CGG - Chr3:81218657-81218676 None:intergenic 30.0%
CTTATCAAATGACACATCAA+AGG + Chr3:81217704-81217723 MsG0380016264.01.T01:intron 30.0%
GAAGAGTGAGTATTTGATAT+GGG + Chr3:81218656-81218675 MsG0380016264.01.T01:intron 30.0%
GAGCAAAGAATTATATCGTT+TGG - Chr3:81216974-81216993 None:intergenic 30.0%
GCATAAGACAAATGACAATT+AGG - Chr3:81216803-81216822 None:intergenic 30.0%
GTTCAAACTCCTAAGAATAA+GGG - Chr3:81217012-81217031 None:intergenic 30.0%
TAATAAACCAAACCCGATAA+TGG - Chr3:81217034-81217053 None:intergenic 30.0%
TAATATACTTCGAATGTTGG+AGG - Chr3:81219755-81219774 None:intergenic 30.0%
TAGTTTCTTCTTCCTCTTTA+CGG + Chr3:81217474-81217493 MsG0380016264.01.T01:intron 30.0%
TATATTTCAAAAAAAGGGGG+AGG - Chr3:81220039-81220058 None:intergenic 30.0%
TCCAAAAGTTAATAACACAC+TGG - Chr3:81218416-81218435 None:intergenic 30.0%
TCCAACATTGTCATTAACAA+AGG + Chr3:81217443-81217462 MsG0380016264.01.T01:CDS 30.0%
TGATGTTTCAATGTTGTTGA+TGG + Chr3:81219835-81219854 MsG0380016264.01.T01:intron 30.0%
TGTCTCATAAATTACAGTAG+AGG + Chr3:81220178-81220197 MsG0380016264.01.T01:three_prime_UTR 30.0%
TTAGGAGTTTGAACCATTAT+CGG + Chr3:81217018-81217037 MsG0380016264.01.T01:intron 30.0%
TTTATATGGGATGAAGACTT+GGG + Chr3:81218614-81218633 MsG0380016264.01.T01:CDS 30.0%
! AATTGTCATTTGTCTTATGC+TGG + Chr3:81216803-81216822 MsG0380016264.01.T01:intron 30.0%
! AGTTTTACCCTGCAAATAAA+AGG - Chr3:81219657-81219676 None:intergenic 30.0%
! TTGGATGAAGATTTTCATTG+TGG + Chr3:81218431-81218450 MsG0380016264.01.T01:intron 30.0%
! TTGGATTTTTGTTAGAGTGA+CGG + Chr3:81218941-81218960 MsG0380016264.01.T01:intron 30.0%
!! ACCAGTGTGTTATTAACTTT+TGG + Chr3:81218412-81218431 MsG0380016264.01.T01:intron 30.0%
!! ACTAAGAAAGACCTTTTTCA+CGG - Chr3:81218197-81218216 None:intergenic 30.0%
!! ATTTGAGTTTTTACCCTTCT+AGG + Chr3:81218537-81218556 MsG0380016264.01.T01:intron 30.0%
!! GTGTCATTTGATAAGTGATT+TGG - Chr3:81217699-81217718 None:intergenic 30.0%
!! TCATTCTTACTTTTACAGCA+TGG + Chr3:81219370-81219389 MsG0380016264.01.T01:intron 30.0%
!! TGAGGATTTTAGGTGATATT+AGG + Chr3:81216936-81216955 MsG0380016264.01.T01:intron 30.0%
!! TGTTGTTTCTCTACAGATAT+GGG + Chr3:81217892-81217911 MsG0380016264.01.T01:intron 30.0%
!! TTGTTGTTTCTCTACAGATA+TGG + Chr3:81217891-81217910 MsG0380016264.01.T01:intron 30.0%
!!! ACAATTATGGCTGTTTTGAT+TGG + Chr3:81216433-81216452 MsG0380016264.01.T01:intron 30.0%
!!! CTTAGCCTTTTGAGTTAATT+TGG + Chr3:81216644-81216663 MsG0380016264.01.T01:intron 30.0%
!!! GCGTTAACTATTGATTTTCT+TGG + Chr3:81218922-81218941 MsG0380016264.01.T01:intron 30.0%
!!! GTAGTTTTTGGTTTCTTTCT+AGG + Chr3:81217411-81217430 MsG0380016264.01.T01:CDS 30.0%
!!! TGTTGTTGAGTTTGGTTTTT+AGG - Chr3:81216022-81216041 None:intergenic 30.0%
!!! TGTTGTTTTTTTCTTCAGCA+GGG + Chr3:81217068-81217087 MsG0380016264.01.T01:intron 30.0%
!!! TTGTTGTTTTTTTCTTCAGC+AGG + Chr3:81217067-81217086 MsG0380016264.01.T01:intron 30.0%
AAAAAATTGTCACACAGTGG+TGG - Chr3:81217318-81217337 None:intergenic 35.0%
AACTAATCAACAACCTGTGA+AGG + Chr3:81219775-81219794 MsG0380016264.01.T01:intron 35.0%
AATAATCTACTGCAGCACAA+AGG - Chr3:81217504-81217523 None:intergenic 35.0%
AATGTAAGAGAGATCAATCG+AGG - Chr3:81217613-81217632 None:intergenic 35.0%
AGATCTTTGTGTTGTGAGTT+TGG - Chr3:81216072-81216091 None:intergenic 35.0%
AGGGAAGTTCCGAAATAAAT+GGG + Chr3:81217197-81217216 MsG0380016264.01.T01:exon 35.0%
ATGAAATAGAGTCCTAGCTA+GGG + Chr3:81220080-81220099 MsG0380016264.01.T01:three_prime_UTR 35.0%
ATGAATGGGATGAGTTTGAA+TGG + Chr3:81218338-81218357 MsG0380016264.01.T01:CDS 35.0%
ATGTAAGAGAGATCAATCGA+GGG - Chr3:81217612-81217631 None:intergenic 35.0%
ATTTACCTGATTTCCTAGTG+TGG - Chr3:81219550-81219569 None:intergenic 35.0%
CATCATCTGCTAGCTATATT+TGG + Chr3:81216706-81216725 MsG0380016264.01.T01:intron 35.0%
CGAAGAGTGAGTATTTGATA+TGG + Chr3:81218655-81218674 MsG0380016264.01.T01:intron 35.0%
GACAGTTTATAGGCCTAATA+TGG + Chr3:81218026-81218045 MsG0380016264.01.T01:intron 35.0%
GGCCATCATAATGAAATAGA+AGG - Chr3:81218312-81218331 None:intergenic 35.0%
GGTTCAAACTCCTAAGAATA+AGG - Chr3:81217013-81217032 None:intergenic 35.0%
GTAACGGTACCCATTTATTT+CGG - Chr3:81217209-81217228 None:intergenic 35.0%
TAGGAGTTTGAACCATTATC+GGG + Chr3:81217019-81217038 MsG0380016264.01.T01:intron 35.0%
TCTTGTATTATCTGGTCTAC+CGG + Chr3:81219041-81219060 MsG0380016264.01.T01:intron 35.0%
TGAGTTTGAATGGTCAAAGA+AGG + Chr3:81218348-81218367 MsG0380016264.01.T01:CDS 35.0%
TGGCAAATGACAAAAAGAAG+AGG + Chr3:81218817-81218836 MsG0380016264.01.T01:CDS 35.0%
TGTAAACAATGAAGGTCAGA+AGG - Chr3:81218075-81218094 None:intergenic 35.0%
TGTCTGTCATTCTCATATTG+AGG + Chr3:81216918-81216937 MsG0380016264.01.T01:intron 35.0%
TTAAAACTGGTGAAGAAGCA+TGG + Chr3:81218748-81218767 MsG0380016264.01.T01:CDS 35.0%
TTACAGTAGAGGTTGCTTAT+TGG + Chr3:81220189-81220208 MsG0380016264.01.T01:three_prime_UTR 35.0%
TTATAAAAGACCAAGCACGA+CGG - Chr3:81217653-81217672 None:intergenic 35.0%
TTCACCATTCATCAACTAGA+AGG - Chr3:81217140-81217159 None:intergenic 35.0%
TTTACCTGATTTCCTAGTGT+GGG - Chr3:81219549-81219568 None:intergenic 35.0%
TTTATTGGATGCAGTCCTAA+TGG + Chr3:81217339-81217358 MsG0380016264.01.T01:intron 35.0%
TTTCCTTGAAGTAACCACAA+AGG - Chr3:81216734-81216753 None:intergenic 35.0%
! ACTTTTACTTGCGTAGATTG+TGG + Chr3:81217975-81217994 MsG0380016264.01.T01:CDS 35.0%
! AGAACGGAAGATGAATTTTC+CGG - Chr3:81216147-81216166 None:intergenic 35.0%
! AGCTATATTTGGTTCCTTTG+TGG + Chr3:81216717-81216736 MsG0380016264.01.T01:intron 35.0%
! ATTGGGGAGCTACTAATTTT+AGG + Chr3:81216583-81216602 MsG0380016264.01.T01:intron 35.0%
! CAGATCTTCATCTCTTTTTC+TGG + Chr3:81216251-81216270 MsG0380016264.01.T01:five_prime_UTR 35.0%
! CTGGTTTAGAACCCAATAAA+GGG + Chr3:81218788-81218807 MsG0380016264.01.T01:CDS 35.0%
! CTTTTACTTGCGTAGATTGT+GGG + Chr3:81217976-81217995 MsG0380016264.01.T01:CDS 35.0%
! GAACATGCATATTTCAAGTC+CGG + Chr3:81219918-81219937 MsG0380016264.01.T01:CDS 35.0%
! TGCCACATGCTTTTGTAATT+GGG + Chr3:81216566-81216585 MsG0380016264.01.T01:intron 35.0%
! TTTTACTTGCGTAGATTGTG+GGG + Chr3:81217977-81217996 MsG0380016264.01.T01:CDS 35.0%
!! ATCTCTTTTTCTGGTACGTT+TGG + Chr3:81216260-81216279 MsG0380016264.01.T01:intron 35.0%
!! ATGCAGGTTTGTTGAGATTA+TGG + Chr3:81219097-81219116 MsG0380016264.01.T01:intron 35.0%
!! GATACCTTCTAGTTGATGAA+TGG + Chr3:81217133-81217152 MsG0380016264.01.T01:five_prime_UTR 35.0%
!!! GCCTTTTGAGTTAATTTGGT+AGG + Chr3:81216648-81216667 MsG0380016264.01.T01:intron 35.0%
!!! GCTCTTTTTGTTGTTGAGTT+TGG - Chr3:81216030-81216049 None:intergenic 35.0%
!!! GGGAATCTTTTAAAACGGTT+AGG - Chr3:81219187-81219206 None:intergenic 35.0%
!!! GTTGAGTTTGGTTTTTAGGT+GGG - Chr3:81216018-81216037 None:intergenic 35.0%
!!! GTTGTTTTTTTCTTCAGCAG+GGG + Chr3:81217069-81217088 MsG0380016264.01.T01:intron 35.0%
!!! TGTTGAGTTTGGTTTTTAGG+TGG - Chr3:81216019-81216038 None:intergenic 35.0%
AAAAAGAAAACCCCAGCTGA+GGG - Chr3:81216197-81216216 None:intergenic 40.0%
AACCCAATAAAGGGTTGACA+TGG + Chr3:81218797-81218816 MsG0380016264.01.T01:CDS 40.0%
AAGAACAAGTGACACATCTC+AGG - Chr3:81220223-81220242 None:intergenic 40.0%
AATTGATGCAGCCGTGAAAA+AGG + Chr3:81218183-81218202 MsG0380016264.01.T01:intron 40.0%
ACTCATCCCATTCATTAGCT+CGG - Chr3:81218333-81218352 None:intergenic 40.0%
AGACATATTAATACCACCGC+CGG - Chr3:81219940-81219959 None:intergenic 40.0%
AGTTCCTTTGCACATGCTTA+TGG + Chr3:81216854-81216873 MsG0380016264.01.T01:intron 40.0%
ATGCACAATTAGATACAGCC+CGG - Chr3:81219063-81219082 None:intergenic 40.0%
ATTATCAGACCTGCGAGTAA+CGG - Chr3:81217225-81217244 None:intergenic 40.0%
ATTCTCTGTCACATGAATGC+AGG + Chr3:81219081-81219100 MsG0380016264.01.T01:intron 40.0%
ATTTCTGCATCCTGACATTG+TGG + Chr3:81218574-81218593 MsG0380016264.01.T01:CDS 40.0%
CAAACCATAAGCATGTGCAA+AGG - Chr3:81216861-81216880 None:intergenic 40.0%
CAAGTGCAGGTACTTAAAAC+TGG + Chr3:81218735-81218754 MsG0380016264.01.T01:intron 40.0%
CAGGCTATATCAGGAAAAAG+TGG - Chr3:81219473-81219492 None:intergenic 40.0%
CAGGGAAGTTCCGAAATAAA+TGG + Chr3:81217196-81217215 MsG0380016264.01.T01:exon 40.0%
CATGAAATAGAGTCCTAGCT+AGG + Chr3:81220079-81220098 MsG0380016264.01.T01:three_prime_UTR 40.0%
CATTTATTTCGGAACTTCCC+TGG - Chr3:81217198-81217217 None:intergenic 40.0%
CATTTCATAGCCAACAGTGA+AGG - Chr3:81218157-81218176 None:intergenic 40.0%
CTGACCTTCATTGTTTACAG+AGG + Chr3:81218076-81218095 MsG0380016264.01.T01:intron 40.0%
CTTAAGATACACACCTCACT+GGG - Chr3:81218007-81218026 None:intergenic 40.0%
CTTGTATTATCTGGTCTACC+GGG + Chr3:81219042-81219061 MsG0380016264.01.T01:intron 40.0%
GAACCACAAGAAACTGCTAT+GGG - Chr3:81218878-81218897 None:intergenic 40.0%
GAATTATATCGTTTGGCGTG+TGG - Chr3:81216967-81216986 None:intergenic 40.0%
GCTTCCTATAAAACCAGTGA+AGG + Chr3:81216108-81216127 MsG0380016264.01.T01:five_prime_UTR 40.0%
GGAAACCCAGTGAAATTATG+AGG + Chr3:81217364-81217383 MsG0380016264.01.T01:CDS 40.0%
GTTCCTTTGTGGTTACTTCA+AGG + Chr3:81216728-81216747 MsG0380016264.01.T01:intron 40.0%
GTTTGAACCATTATCGGGTT+TGG + Chr3:81217024-81217043 MsG0380016264.01.T01:intron 40.0%
TAGGATAAAGACTCCTTCAC+AGG - Chr3:81219791-81219810 None:intergenic 40.0%
TCAGCTCTCAAGTTCTACAT+TGG - Chr3:81220119-81220138 None:intergenic 40.0%
TCTTAAGATACACACCTCAC+TGG - Chr3:81218008-81218027 None:intergenic 40.0%
TGAACCACAAGAAACTGCTA+TGG - Chr3:81218879-81218898 None:intergenic 40.0%
TGCAGTTAGAAGATGTGTTG+AGG + Chr3:81219308-81219327 MsG0380016264.01.T01:CDS 40.0%
TGCCATGTCAACCCTTTATT+GGG - Chr3:81218802-81218821 None:intergenic 40.0%
TTGCAGGGTAAAACTGAAAC+CGG + Chr3:81219662-81219681 MsG0380016264.01.T01:intron 40.0%
TTGCCATGTCAACCCTTTAT+TGG - Chr3:81218803-81218822 None:intergenic 40.0%
TTGTGTCTGGCATATGATTC+AGG + Chr3:81219148-81219167 MsG0380016264.01.T01:CDS 40.0%
! ATTGAAGAAAAGTGCAAGCG+TGG + Chr3:81216673-81216692 MsG0380016264.01.T01:intron 40.0%
! CCTGGTTTAGAACCCAATAA+AGG + Chr3:81218787-81218806 MsG0380016264.01.T01:CDS 40.0%
! CTGCCACATGCTTTTGTAAT+TGG + Chr3:81216565-81216584 MsG0380016264.01.T01:intron 40.0%
! GATTTTTGTTAGAGTGACGG+AGG + Chr3:81218944-81218963 MsG0380016264.01.T01:intron 40.0%
! GCCACATGCTTTTGTAATTG+GGG + Chr3:81216567-81216586 MsG0380016264.01.T01:intron 40.0%
! GTTTTATGAGCATACAGCCA+GGG + Chr3:81217178-81217197 MsG0380016264.01.T01:five_prime_UTR 40.0%
! TCCCCAATTACAAAAGCATG+TGG - Chr3:81216571-81216590 None:intergenic 40.0%
! TGAATTTTCCGGCAGAAGAA+TGG - Chr3:81216136-81216155 None:intergenic 40.0%
! TGAGTTTTTACCCTTCTAGG+TGG + Chr3:81218540-81218559 MsG0380016264.01.T01:intron 40.0%
! TGTGTTGTGAGTTTGGAACA+AGG - Chr3:81216065-81216084 None:intergenic 40.0%
! TTGTGAGTTTGGAACAAGGA+GGG - Chr3:81216061-81216080 None:intergenic 40.0%
! TTTAAGTTTGGTCCCTAGCT+AGG - Chr3:81220095-81220114 None:intergenic 40.0%
!! AGTTTTATGAGCATACAGCC+AGG + Chr3:81217177-81217196 MsG0380016264.01.T01:five_prime_UTR 40.0%
!! CCTTTATTGGGTTCTAAACC+AGG - Chr3:81218790-81218809 None:intergenic 40.0%
!! GCTTGACTTGTACACAGTTA+TGG + Chr3:81219992-81220011 MsG0380016264.01.T01:three_prime_UTR 40.0%
!! GGCATATGATTCAGGTTGAA+TGG + Chr3:81219156-81219175 MsG0380016264.01.T01:intron 40.0%
!! GTTTCAATGTTGTTGATGGC+AGG + Chr3:81219839-81219858 MsG0380016264.01.T01:intron 40.0%
!!! GGAACCTTCACTGGTTTTAT+AGG - Chr3:81216115-81216134 None:intergenic 40.0%
!!! GTTTGGTTTTTAGGTGGGTT+TGG - Chr3:81216013-81216032 None:intergenic 40.0%
AAAAGAAAACCCCAGCTGAG+GGG - Chr3:81216196-81216215 None:intergenic 45.0%
ACCTGCACTTGAAATGACAG+AGG - Chr3:81218726-81218745 None:intergenic 45.0%
ACGTGGAAGAAGGTGAAGAA+CGG - Chr3:81216163-81216182 None:intergenic 45.0%
ACTCCAATCTTCTCATGTGC+AGG - Chr3:81219492-81219511 None:intergenic 45.0%
AGTCCCATAGCAGTTTCTTG+TGG + Chr3:81218872-81218891 MsG0380016264.01.T01:intron 45.0%
AGTGGACCATGTTTCAGAGT+CGG + Chr3:81219883-81219902 MsG0380016264.01.T01:CDS 45.0%
ATGATGGCCGAGCTAATGAA+TGG + Chr3:81218323-81218342 MsG0380016264.01.T01:CDS 45.0%
CAAAATCAAGTCCCCATCCA+TGG - Chr3:81219290-81219309 None:intergenic 45.0%
CAGAAGAATGGAACCTTCAC+TGG - Chr3:81216124-81216143 None:intergenic 45.0%
CTTGGCATTGCAGAATGACT+TGG + Chr3:81219263-81219282 MsG0380016264.01.T01:intron 45.0%
GAAAAAGAAAACCCCAGCTG+AGG - Chr3:81216198-81216217 None:intergenic 45.0%
GCTTAGCATACCACCTAGAA+GGG - Chr3:81218553-81218572 None:intergenic 45.0%
GGTAAACTTTCTGCTCCTCT+TGG - Chr3:81217929-81217948 None:intergenic 45.0%
GTGCTCGCAAACAGACTAAA+TGG + Chr3:81218383-81218402 MsG0380016264.01.T01:CDS 45.0%
TACCTTGTGACCTTCACTGT+TGG + Chr3:81218144-81218163 MsG0380016264.01.T01:intron 45.0%
TAGCCTGCACATGAGAAGAT+TGG + Chr3:81219486-81219505 MsG0380016264.01.T01:intron 45.0%
TCACTGGGTTTCCTACCATT+AGG - Chr3:81217357-81217376 None:intergenic 45.0%
TCTCATGTGCAGGCTATATC+AGG - Chr3:81219482-81219501 None:intergenic 45.0%
TCTGCTCCTCTTGGATTTGA+TGG - Chr3:81217920-81217939 None:intergenic 45.0%
TGAAGGTTCCATTCTTCTGC+CGG + Chr3:81216125-81216144 MsG0380016264.01.T01:five_prime_UTR 45.0%
TGATGGCCGAGCTAATGAAT+GGG + Chr3:81218324-81218343 MsG0380016264.01.T01:CDS 45.0%
TGCAGGGTAAAACTGAAACC+GGG + Chr3:81219663-81219682 MsG0380016264.01.T01:intron 45.0%
TGGGTTCCATCAAATCCAAG+AGG + Chr3:81217911-81217930 MsG0380016264.01.T01:CDS 45.0%
TGTTCCCACACTAGGAAATC+AGG + Chr3:81219542-81219561 MsG0380016264.01.T01:CDS 45.0%
TTGCAGTTCAATCTCCCATC+TGG + Chr3:81217579-81217598 MsG0380016264.01.T01:intron 45.0%
TTGGAGTTGTCGATGCTCAA+TGG + Chr3:81219505-81219524 MsG0380016264.01.T01:CDS 45.0%
TTGGATGCAGTCCTAATGGT+AGG + Chr3:81217343-81217362 MsG0380016264.01.T01:intron 45.0%
! ACCTCTGTCATTTCAAGTGC+AGG + Chr3:81218722-81218741 MsG0380016264.01.T01:intron 45.0%
! CATGCATATTTCAAGTCCGG+CGG + Chr3:81219921-81219940 MsG0380016264.01.T01:CDS 45.0%
! GCAGCTTGCACTTTTAGCAT+TGG - Chr3:81217551-81217570 None:intergenic 45.0%
! GTGAAGGTCACAAGGTACTT+TGG - Chr3:81218141-81218160 None:intergenic 45.0%
! GTTGTGAGTTTGGAACAAGG+AGG - Chr3:81216062-81216081 None:intergenic 45.0%
!! AATGACTTGGTCCATGGATG+GGG + Chr3:81219276-81219295 MsG0380016264.01.T01:CDS 45.0%
!! AATGTTGTTGATGGCAGGTG+AGG + Chr3:81219844-81219863 MsG0380016264.01.T01:intron 45.0%
!! AGAATGACTTGGTCCATGGA+TGG + Chr3:81219274-81219293 MsG0380016264.01.T01:intron 45.0%
!! ATGTTGTTGATGGCAGGTGA+GGG + Chr3:81219845-81219864 MsG0380016264.01.T01:intron 45.0%
!! GAATGACTTGGTCCATGGAT+GGG + Chr3:81219275-81219294 MsG0380016264.01.T01:intron 45.0%
!! GCTCAATGGATTGTTCACCA+AGG + Chr3:81219519-81219538 MsG0380016264.01.T01:CDS 45.0%
!! TCATATGGTGCCACAATGTC+AGG - Chr3:81218587-81218606 None:intergenic 45.0%
!! TTGCAGAATGACTTGGTCCA+TGG + Chr3:81219270-81219289 MsG0380016264.01.T01:intron 45.0%
!!! TGGTTTTTAGGTGGGTTTGG+AGG - Chr3:81216010-81216029 None:intergenic 45.0%
AACCAGGCTGTGAAATCTCC+AGG - Chr3:81218774-81218793 None:intergenic 50.0%
ACAAGGAGGTAAATGGGGGT+CGG - Chr3:81218988-81219007 None:intergenic 50.0%
ACGCTGCACAAGGAGGTAAA+TGG - Chr3:81218995-81219014 None:intergenic 50.0%
AGCCAACAGTGAAGGTCACA+AGG - Chr3:81218149-81218168 None:intergenic 50.0%
CAGTATTCTCGCGAGAAGCA+TGG + Chr3:81219123-81219142 MsG0380016264.01.T01:CDS 50.0%
CATGCTTCTCGCGAGAATAC+TGG - Chr3:81219125-81219144 None:intergenic 50.0%
CGACTCAGCTTCAACAATGC+CGG - Chr3:81217954-81217973 None:intergenic 50.0%
CGCTGCACAAGGAGGTAAAT+GGG - Chr3:81218994-81219013 None:intergenic 50.0%
CGCTTAGCATACCACCTAGA+AGG - Chr3:81218554-81218573 None:intergenic 50.0%
CGGCATTGTTGAAGCTGAGT+CGG + Chr3:81217952-81217971 MsG0380016264.01.T01:CDS 50.0%
CTGCACAAGGAGGTAAATGG+GGG - Chr3:81218992-81219011 None:intergenic 50.0%
GACTCAGCTTCAACAATGCC+GGG - Chr3:81217953-81217972 None:intergenic 50.0%
GCAGTTACTTACGCTGCACA+AGG - Chr3:81219005-81219024 None:intergenic 50.0%
GCTGCACAAGGAGGTAAATG+GGG - Chr3:81218993-81219012 None:intergenic 50.0%
GGAGCAGAAAGTTTACCTCC+CGG + Chr3:81217932-81217951 MsG0380016264.01.T01:CDS 50.0%
GGAGGTGAGTCTACGCATAA+TGG - Chr3:81220021-81220040 None:intergenic 50.0%
GTTACTTACGCTGCACAAGG+AGG - Chr3:81219002-81219021 None:intergenic 50.0%
TGTGCAGCGTAAGTAACTGC+CGG + Chr3:81219005-81219024 MsG0380016264.01.T01:intron 50.0%
TTACAGCATGGTCCTAGCAG+CGG + Chr3:81219382-81219401 MsG0380016264.01.T01:intron 50.0%
TTATAGACCGCGCCTTCTAG+AGG + Chr3:81216765-81216784 MsG0380016264.01.T01:intron 50.0%
TTCCTAGTGTGGGAACACCT+TGG - Chr3:81219539-81219558 None:intergenic 50.0%
! AAATGGGTACCGTTACTCGC+AGG + Chr3:81217213-81217232 MsG0380016264.01.T01:exon 50.0%
! CACAAAGGTACGCCGTAAAG+AGG - Chr3:81217489-81217508 None:intergenic 50.0%
! GAGTTTGGAACAAGGAGGGA+GGG - Chr3:81216057-81216076 None:intergenic 50.0%
! TAGAGTGACGGAGGAGAAAC+CGG + Chr3:81218953-81218972 MsG0380016264.01.T01:intron 50.0%
! TGAGTTTGGAACAAGGAGGG+AGG - Chr3:81216058-81216077 None:intergenic 50.0%
!! AAAGTGAGAGCGCCTCTAGA+AGG - Chr3:81216780-81216799 None:intergenic 50.0%
!! CGCTAACCGACTCTGAAACA+TGG - Chr3:81219892-81219911 None:intergenic 50.0%
ATCGAGGGAAGCAAGCCAGA+TGG - Chr3:81217597-81217616 None:intergenic 55.0%
ATTGTGGGGCAAACCCAGTG+AGG + Chr3:81217991-81218010 MsG0380016264.01.T01:CDS 55.0%
GATATACAGGCCGTCGTGCT+TGG + Chr3:81217640-81217659 MsG0380016264.01.T01:intron 55.0%
GCAAAACATACCCCCTGCCA+TGG - Chr3:81219695-81219714 None:intergenic 55.0%
GGGAGAGATGTAGGAAGGAG+TGG + Chr3:81219865-81219884 MsG0380016264.01.T01:CDS 55.0%
GGTGAGGGAGAGATGTAGGA+AGG + Chr3:81219860-81219879 MsG0380016264.01.T01:intron 55.0%
TCAGCTTCAACAATGCCGGG+AGG - Chr3:81217950-81217969 None:intergenic 55.0%
TCGAGGGAAGCAAGCCAGAT+GGG - Chr3:81217596-81217615 None:intergenic 55.0%
TGTCGGAGGAACGTGGAAGA+AGG - Chr3:81216173-81216192 None:intergenic 55.0%
! ACTGGTGAAGAAGCATGGCC+TGG + Chr3:81218753-81218772 MsG0380016264.01.T01:CDS 55.0%
! AGAGTGACGGAGGAGAAACC+GGG + Chr3:81218954-81218973 MsG0380016264.01.T01:intron 55.0%
! CACCAAGGTGTTCCCACACT+AGG + Chr3:81219534-81219553 MsG0380016264.01.T01:CDS 55.0%
! GAGAAGCATGGCGTTGTGTC+TGG + Chr3:81219135-81219154 MsG0380016264.01.T01:CDS 55.0%
! GCATATTTCAAGTCCGGCGG+TGG + Chr3:81219924-81219943 MsG0380016264.01.T01:CDS 55.0%
!! CTGAAACCGGGAAAGCACCA+TGG + Chr3:81219675-81219694 MsG0380016264.01.T01:CDS 55.0%
GGCAGGTGAGGGAGAGATGT+AGG + Chr3:81219856-81219875 MsG0380016264.01.T01:intron 60.0%
GGCCTGGAGATTTCACAGCC+TGG + Chr3:81218769-81218788 MsG0380016264.01.T01:CDS 60.0%
TGACGGAGGAGAAACCGGGA+TGG + Chr3:81218958-81218977 MsG0380016264.01.T01:CDS 60.0%
TGGTCCTAGCAGCGGCTTAC+CGG + Chr3:81219390-81219409 MsG0380016264.01.T01:intron 60.0%
TTCTCCGGTAAGCCGCTGCT+AGG - Chr3:81219397-81219416 None:intergenic 60.0%
! AAACCCCAGCTGAGGGGTGT+CGG - Chr3:81216190-81216209 None:intergenic 60.0%
!! AACCGGGAAAGCACCATGGC+AGG + Chr3:81219679-81219698 MsG0380016264.01.T01:CDS 60.0%
!! ACCGGGAAAGCACCATGGCA+GGG + Chr3:81219680-81219699 MsG0380016264.01.T01:CDS 60.0%
CCCCTGCCATGGTGCTTTCC+CGG - Chr3:81219684-81219703 None:intergenic 65.0%
TCCTCCGACACCCCTCAGCT+GGG + Chr3:81216183-81216202 MsG0380016264.01.T01:five_prime_UTR 65.0%
TGGGGGTCGGAACACCATCC+CGG - Chr3:81218975-81218994 None:intergenic 65.0%
TTCCTCCGACACCCCTCAGC+TGG + Chr3:81216182-81216201 MsG0380016264.01.T01:five_prime_UTR 65.0%
!! CCGGGAAAGCACCATGGCAG+GGG + Chr3:81219681-81219700 MsG0380016264.01.T01:CDS 65.0%
!! CGGGAAAGCACCATGGCAGG+GGG + Chr3:81219682-81219701 MsG0380016264.01.T01:CDS 65.0%
!! GAGAGCGCCTCTAGAAGGCG+CGG - Chr3:81216775-81216794 None:intergenic 65.0%
!! TGAGGGGTGTCGGAGGAACG+TGG - Chr3:81216180-81216199 None:intergenic 65.0%
CCTCCGACACCCCTCAGCTG+GGG + Chr3:81216184-81216203 MsG0380016264.01.T01:five_prime_UTR 70.0%
!! CCCCAGCTGAGGGGTGTCGG+AGG - Chr3:81216187-81216206 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 81215984 81220319 81215984 ID=MsG0380016264.01;Name=MsG0380016264.01
Chr3 mRNA 81215984 81220319 81215984 ID=MsG0380016264.01.T01;Parent=MsG0380016264.01;Name=MsG0380016264.01.T01;_AED=0.39;_eAED=0.39;_QI=418|0.83|1|1|0.75|0.76|13|342|324
Chr3 exon 81215984 81216272 81215984 ID=MsG0380016264.01.T01:exon:13710;Parent=MsG0380016264.01.T01
Chr3 exon 81217086 81217234 81217086 ID=MsG0380016264.01.T01:exon:13711;Parent=MsG0380016264.01.T01
Chr3 exon 81217353 81217464 81217353 ID=MsG0380016264.01.T01:exon:13712;Parent=MsG0380016264.01.T01
Chr3 exon 81217908 81218012 81217908 ID=MsG0380016264.01.T01:exon:13713;Parent=MsG0380016264.01.T01
Chr3 exon 81218289 81218404 81218289 ID=MsG0380016264.01.T01:exon:13714;Parent=MsG0380016264.01.T01
Chr3 exon 81218559 81218660 81218559 ID=MsG0380016264.01.T01:exon:13715;Parent=MsG0380016264.01.T01
Chr3 exon 81218744 81218857 81218744 ID=MsG0380016264.01.T01:exon:13716;Parent=MsG0380016264.01.T01
Chr3 exon 81218956 81219012 81218956 ID=MsG0380016264.01.T01:exon:13717;Parent=MsG0380016264.01.T01
Chr3 exon 81219103 81219169 81219103 ID=MsG0380016264.01.T01:exon:13718;Parent=MsG0380016264.01.T01
Chr3 exon 81219276 81219329 81219276 ID=MsG0380016264.01.T01:exon:13719;Parent=MsG0380016264.01.T01
Chr3 exon 81219489 81219563 81219489 ID=MsG0380016264.01.T01:exon:13720;Parent=MsG0380016264.01.T01
Chr3 exon 81219668 81219703 81219668 ID=MsG0380016264.01.T01:exon:13721;Parent=MsG0380016264.01.T01
Chr3 exon 81219861 81220319 81219861 ID=MsG0380016264.01.T01:exon:13722;Parent=MsG0380016264.01.T01
Chr3 five_prime_UTR 81215984 81216272 81215984 ID=MsG0380016264.01.T01:five_prime_utr;Parent=MsG0380016264.01.T01
Chr3 five_prime_UTR 81217086 81217214 81217086 ID=MsG0380016264.01.T01:five_prime_utr;Parent=MsG0380016264.01.T01
Chr3 CDS 81217215 81217234 81217215 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81217353 81217464 81217353 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81217908 81218012 81217908 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81218289 81218404 81218289 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81218559 81218660 81218559 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81218744 81218857 81218744 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81218956 81219012 81218956 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81219103 81219169 81219103 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81219276 81219329 81219276 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81219489 81219563 81219489 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81219668 81219703 81219668 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 CDS 81219861 81219977 81219861 ID=MsG0380016264.01.T01:cds;Parent=MsG0380016264.01.T01
Chr3 three_prime_UTR 81219978 81220319 81219978 ID=MsG0380016264.01.T01:three_prime_utr;Parent=MsG0380016264.01.T01
Gene Sequence

>MsG0380016264.01.T01

ATGGGTACCGTTACTCGCAGTCCTAATGGTAGGAAACCCAGTGAAATTATGAGGCTTATTGTGACAACTTTTATTGGAGTAGTTTTTGGTTTCTTTCTAGGAGTGTCGTTTCCAACATTGTCATTAACAAAGATATGGGTTCCATCAAATCCAAGAGGAGCAGAAAGTTTACCTCCCGGCATTGTTGAAGCTGAGTCGGACTTTTACTTGCGTAGATTGTGGGGCAAACCCAGTGAGTTTTCAGAGAATTTCACAATCCTTCTATTTCATTATGATGGCCGAGCTAATGAATGGGATGAGTTTGAATGGTCAAAGAAGGCTATTCATGTGAGTGCTCGCAAACAGACTAAATGGTGGTATGCTAAGCGATTTCTGCATCCTGACATTGTGGCACCATATGACTATATATTTATATGGGATGAAGACTTGGGCGTTGAGCATTTTAACGCCGAAGAGTACTTAAAACTGGTGAAGAAGCATGGCCTGGAGATTTCACAGCCTGGTTTAGAACCCAATAAAGGGTTGACATGGCAAATGACAAAAAGAAGAGGAGATAAAGAAGTTCACAAAGTGACGGAGGAGAAACCGGGATGGTGTTCCGACCCCCATTTACCTCCTTGTGCAGCGTTTGTTGAGATTATGGCTCCAGTATTCTCGCGAGAAGCATGGCGTTGTGTCTGGCATATGATTCAGAATGACTTGGTCCATGGATGGGGACTTGATTTTGCAGTTAGAAGATGTGTTGAGCCTGCACATGAGAAGATTGGAGTTGTCGATGCTCAATGGATTGTTCACCAAGGTGTTCCCACACTAGGAAATCAGGGTAAAACTGAAACCGGGAAAGCACCATGGCAGGGGGTGAGGGAGAGATGTAGGAAGGAGTGGACCATGTTTCAGAGTCGGTTAGCGAATGCAGAACATGCATATTTCAAGTCCGGCGGTGGTATTAATATGTCTAATTCCACTGGTCATTAG
Protein sequence

>MsG0380016264.01.T01

MGTVTRSPNGRKPSEIMRLIVTTFIGVVFGFFLGVSFPTLSLTKIWVPSNPRGAESLPPGIVEAESDFYLRRLWGKPSEFSENFTILLFHYDGRANEWDEFEWSKKAIHVSARKQTKWWYAKRFLHPDIVAPYDYIFIWDEDLGVEHFNAEEYLKLVKKHGLEISQPGLEPNKGLTWQMTKRRGDKEVHKVTEEKPGWCSDPHLPPCAAFVEIMAPVFSREAWRCVWHMIQNDLVHGWGLDFAVRRCVEPAHEKIGVVDAQWIVHQGVPTLGNQGKTETGKAPWQGVRERCRKEWTMFQSRLANAEHAYFKSGGGINMSNSTGH*