AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003852.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003852.01.T01 MTR_1g070135 97.076 342 10 0 1 342 1 342 0.0 693
MsG0180003852.01.T01 MTR_1g070120 79.825 342 69 0 1 342 1 342 0.0 591
MsG0180003852.01.T01 MTR_1g070135 96.538 260 9 0 1 260 1 260 0.0 529
MsG0180003852.01.T01 MTR_1g070085 65.192 339 116 2 1 338 1 338 8.07e-173 484
MsG0180003852.01.T01 MTR_1g070085 65.192 339 116 2 1 338 1 338 8.07e-173 484
MsG0180003852.01.T01 MTR_1g070080 65.306 343 117 2 1 342 1 342 1.55e-172 483
MsG0180003852.01.T01 MTR_1g070085 66.538 260 86 1 80 338 1 260 5.51e-133 380
MsG0180003852.01.T01 MTR_1g070100 64.844 256 89 1 84 338 1 256 1.07e-128 369
MsG0180003852.01.T01 MTR_1g070110 61.132 265 74 1 78 342 2 237 4.68e-118 341
MsG0180003852.01.T01 MTR_6g015950 46.313 339 176 4 1 336 1 336 5.14e-109 322
MsG0180003852.01.T01 MTR_7g016090 44.207 328 178 3 1 326 1 325 9.05e-99 295
MsG0180003852.01.T01 MTR_7g016090 44.207 328 178 3 1 326 3 327 1.04e-98 295
MsG0180003852.01.T01 MTR_7g016080 42.424 330 175 5 1 326 1 319 2.25e-90 274
MsG0180003852.01.T01 MTR_8g024120 40.351 342 199 4 1 339 4 343 9.65e-89 270
MsG0180003852.01.T01 MTR_3g092890 39.706 340 199 4 1 338 1 336 9.93e-89 270
MsG0180003852.01.T01 MTR_5g032880 38.623 334 199 4 14 341 352 685 7.34e-78 252
MsG0180003852.01.T01 MTR_5g032880 39.048 315 182 4 14 324 14 322 6.15e-74 241
MsG0180003852.01.T01 MTR_5g032870 37.538 333 202 4 14 340 14 346 1.16e-75 237
MsG0180003852.01.T01 MTR_7g081710 38.065 310 186 6 14 319 24 331 6.09e-74 232
MsG0180003852.01.T01 MTR_1g048940 36.129 310 189 7 15 319 24 329 7.99e-67 214
MsG0180003852.01.T01 MTR_7g068650 36.000 325 192 7 10 320 21 343 4.39e-66 213
MsG0180003852.01.T01 MTR_1g062110 35.758 330 192 6 15 331 38 360 1.30e-63 207
MsG0180003852.01.T01 MTR_4g015790 34.795 342 194 8 10 326 20 357 5.79e-62 202
MsG0180003852.01.T01 MTR_7g102820 31.054 351 216 4 12 340 35 381 6.11e-60 197
MsG0180003852.01.T01 MTR_7g029655 34.503 342 203 9 10 337 34 368 1.24e-59 196
MsG0180003852.01.T01 MTR_3g063180 33.333 330 207 6 10 329 16 342 7.62e-59 194
MsG0180003852.01.T01 MTR_5g082750 33.861 316 198 7 14 320 24 337 1.81e-58 192
MsG0180003852.01.T01 MTR_3g070860 33.861 316 198 7 14 320 25 338 4.32e-58 192
MsG0180003852.01.T01 MTR_3g072820 33.230 322 201 5 13 326 16 331 7.75e-58 190
MsG0180003852.01.T01 MTR_1g034120 35.258 329 185 7 15 319 4 328 3.43e-56 187
MsG0180003852.01.T01 MTR_3g091350 35.374 294 171 7 36 319 57 341 1.00e-55 186
MsG0180003852.01.T01 MTR_7g063730 33.542 319 199 7 15 326 40 352 1.83e-55 185
MsG0180003852.01.T01 MTR_1g034060 34.545 330 186 7 15 319 4 328 3.33e-55 184
MsG0180003852.01.T01 MTR_5g065010 34.069 317 197 6 10 319 11 322 5.53e-55 183
MsG0180003852.01.T01 MTR_4g093840 33.438 320 198 5 11 319 31 346 1.47e-54 183
MsG0180003852.01.T01 MTR_7g062570 35.849 318 187 8 11 319 27 336 1.88e-54 182
MsG0180003852.01.T01 MTR_3g091360 35.052 291 176 6 36 319 50 334 5.54e-54 181
MsG0180003852.01.T01 MTR_2g069210 36.039 308 185 7 38 338 64 366 1.47e-53 180
MsG0180003852.01.T01 MTR_8g009080 36.120 299 179 7 38 329 94 387 1.65e-53 181
MsG0180003852.01.T01 MTR_7g062550 34.615 312 191 7 15 319 36 341 2.37e-53 180
MsG0180003852.01.T01 MTR_0032s0040 33.140 344 208 10 10 337 34 371 2.48e-53 180
MsG0180003852.01.T01 MTR_8g041600 34.713 314 190 6 35 338 65 373 4.20e-53 179
MsG0180003852.01.T01 MTR_2g069190 34.951 309 187 8 38 338 68 370 6.86e-53 179
MsG0180003852.01.T01 MTR_4g024660 30.868 311 202 6 37 338 66 372 7.05e-53 179
MsG0180003852.01.T01 MTR_8g041620 34.713 314 190 6 35 338 65 373 8.29e-53 179
MsG0180003852.01.T01 MTR_4g087090 33.956 321 189 9 19 321 12 327 8.66e-53 177
MsG0180003852.01.T01 MTR_7g062580 33.667 300 185 8 34 326 51 343 1.28e-52 177
MsG0180003852.01.T01 MTR_5g059130 29.560 318 216 4 14 326 19 333 1.45e-52 177
MsG0180003852.01.T01 MTR_8g075890 30.435 345 220 7 13 341 14 354 2.70e-52 177
MsG0180003852.01.T01 MTR_8g028435 32.508 323 203 8 26 338 46 363 2.81e-52 177
MsG0180003852.01.T01 MTR_5g022020 34.314 306 188 7 3 300 5 305 4.38e-52 176
MsG0180003852.01.T01 MTR_3g072810 30.909 330 220 3 1 326 3 328 4.67e-52 175
MsG0180003852.01.T01 MTR_8g062600 32.476 311 197 5 37 338 66 372 7.36e-52 176
MsG0180003852.01.T01 MTR_7g062600 33.642 324 193 10 15 326 27 340 8.28e-52 176
MsG0180003852.01.T01 MTR_3g058610 31.832 333 207 7 25 341 26 354 1.24e-51 175
MsG0180003852.01.T01 MTR_2g069090 34.295 312 186 7 38 338 68 371 3.96e-51 174
MsG0180003852.01.T01 MTR_2g437380 31.250 320 206 7 13 323 26 340 6.02e-51 173
MsG0180003852.01.T01 MTR_8g009170 32.686 309 194 7 26 324 46 350 6.75e-51 173
MsG0180003852.01.T01 MTR_1g062110 35.907 259 151 5 15 260 38 294 2.30e-50 171
MsG0180003852.01.T01 MTR_1g070185 33.136 338 206 6 10 338 40 366 3.11e-50 171
MsG0180003852.01.T01 MTR_8g075830 31.288 326 200 7 34 341 35 354 6.16e-50 171
MsG0180003852.01.T01 MTR_8g009090 32.407 324 202 8 26 338 46 363 6.28e-50 171
MsG0180003852.01.T01 MTR_5g059140 30.945 307 194 7 14 309 17 316 1.57e-49 169
MsG0180003852.01.T01 MTR_8g009110 32.258 310 198 7 37 338 59 364 2.06e-49 169
MsG0180003852.01.T01 MTR_8g469400 33.101 287 166 7 66 338 85 359 2.91e-49 169
MsG0180003852.01.T01 MTR_2g069300 34.839 310 189 8 38 339 54 358 3.22e-49 169
MsG0180003852.01.T01 MTR_1g034140 33.235 340 201 7 19 338 8 341 6.21e-49 167
MsG0180003852.01.T01 MTR_1g093140 32.059 340 210 9 15 338 43 377 6.24e-49 168
MsG0180003852.01.T01 MTR_4g087110 32.381 315 193 5 24 319 13 326 6.91e-49 167
MsG0180003852.01.T01 MTR_3g088565 32.353 306 171 8 37 323 2 290 7.69e-49 166
MsG0180003852.01.T01 MTR_8g009160 32.039 309 197 7 38 338 60 363 7.96e-49 168
MsG0180003852.01.T01 MTR_3g083370 33.893 298 177 8 37 328 3 286 1.18e-48 166
MsG0180003852.01.T01 MTR_1g093120 32.468 308 198 5 37 338 66 369 1.23e-48 167
MsG0180003852.01.T01 MTR_4g116010 32.595 316 188 8 38 342 50 351 1.77e-48 166
MsG0180003852.01.T01 MTR_5g011250 27.976 336 225 7 10 331 14 346 1.64e-47 164
MsG0180003852.01.T01 MTR_0009s0050 33.438 320 197 8 15 326 24 335 2.44e-47 164
MsG0180003852.01.T01 MTR_0009s0050 33.438 320 197 8 15 326 24 335 3.73e-47 163
MsG0180003852.01.T01 MTR_4g117880 33.115 305 188 9 26 319 46 345 9.98e-47 162
MsG0180003852.01.T01 MTR_8g063070 30.000 310 204 5 37 337 66 371 1.49e-46 162
MsG0180003852.01.T01 MTR_7g056347 32.907 313 193 9 37 338 66 372 1.71e-46 162
MsG0180003852.01.T01 MTR_2g025120 33.446 296 177 9 39 325 5 289 1.98e-46 160
MsG0180003852.01.T01 MTR_1g043760 31.173 324 210 7 10 326 26 343 2.28e-46 161
MsG0180003852.01.T01 MTR_4g087120 31.056 322 194 8 24 322 13 329 2.47e-46 161
MsG0180003852.01.T01 MTR_2g068840 31.611 329 203 7 10 325 28 347 3.01e-46 161
MsG0180003852.01.T01 MTR_2g069060 32.237 304 196 7 35 333 46 344 3.11e-46 160
MsG0180003852.01.T01 MTR_2g069010 32.215 298 188 5 37 324 68 361 5.39e-46 160
MsG0180003852.01.T01 MTR_1g032250 31.487 343 207 9 10 338 43 371 5.67e-46 160
MsG0180003852.01.T01 MTR_8g008930 30.864 324 208 8 26 338 46 364 6.44e-46 160
MsG0180003852.01.T01 MTR_1g093110 30.000 310 206 6 37 339 69 374 8.14e-46 160
MsG0180003852.01.T01 MTR_5g048550 33.229 319 199 8 15 326 24 335 1.08e-45 159
MsG0180003852.01.T01 MTR_4g087140 31.343 335 201 8 12 322 1 330 1.57e-45 159
MsG0180003852.01.T01 MTR_3g040410 33.793 290 176 5 38 319 6 287 2.87e-45 157
MsG0180003852.01.T01 MTR_1g043810 32.209 326 205 9 10 326 26 344 4.05e-45 158
MsG0180003852.01.T01 MTR_2g072890 29.595 321 220 5 10 326 24 342 4.33e-45 158
MsG0180003852.01.T01 MTR_5g055820 31.498 327 201 11 15 329 24 339 4.54e-45 157
MsG0180003852.01.T01 MTR_2g069020 33.115 305 187 8 29 325 62 357 5.38e-45 158
MsG0180003852.01.T01 MTR_2g069020 33.115 305 187 8 29 325 62 357 1.10e-44 157
MsG0180003852.01.T01 MTR_8g064200 32.099 324 197 9 15 326 29 341 1.25e-44 156
MsG0180003852.01.T01 MTR_8g064200 32.099 324 197 9 15 326 34 346 1.59e-44 156
MsG0180003852.01.T01 MTR_1g032140 32.209 326 209 8 10 329 36 355 1.95e-44 156
MsG0180003852.01.T01 MTR_1g033810 33.677 291 177 7 38 319 47 330 3.03e-44 155
MsG0180003852.01.T01 MTR_4g087100 32.121 330 193 10 24 330 13 334 3.74e-44 155
MsG0180003852.01.T01 MTR_4g119410 33.333 327 197 8 28 338 51 372 3.85e-44 155
MsG0180003852.01.T01 MTR_2g068950 33.221 298 175 8 37 319 62 350 3.87e-44 155
MsG0180003852.01.T01 MTR_3g026150 30.233 301 202 6 37 333 59 355 4.04e-44 155
MsG0180003852.01.T01 MTR_3g045230 33.131 329 201 8 11 329 25 344 4.89e-44 155
MsG0180003852.01.T01 MTR_2g068960 33.221 298 175 8 37 319 62 350 5.90e-44 155
MsG0180003852.01.T01 MTR_5g055690 32.095 296 188 8 38 326 47 336 1.18e-43 154
MsG0180003852.01.T01 MTR_5g048740 30.275 327 217 6 15 337 22 341 1.31e-43 154
MsG0180003852.01.T01 MTR_5g048470 30.990 313 199 7 38 341 53 357 1.35e-43 154
MsG0180003852.01.T01 MTR_5g085330 31.293 294 184 7 39 323 6 290 1.48e-43 152
MsG0180003852.01.T01 MTR_1g032220 33.131 329 202 9 10 329 43 362 1.60e-43 154
MsG0180003852.01.T01 MTR_7g105070 31.003 329 214 8 10 330 30 353 4.01e-43 153
MsG0180003852.01.T01 MTR_5g048570 32.515 326 198 10 11 326 20 333 5.14e-43 152
MsG0180003852.01.T01 MTR_5g055900 31.975 319 203 7 15 326 24 335 5.21e-43 152
MsG0180003852.01.T01 MTR_3g043900 31.611 329 205 7 11 329 25 343 6.28e-43 152
MsG0180003852.01.T01 MTR_3g117485 30.612 294 193 6 32 315 40 332 6.69e-43 152
MsG0180003852.01.T01 MTR_5g055680 32.407 324 195 10 15 326 24 335 8.18e-43 152
MsG0180003852.01.T01 MTR_0328s0030 31.023 303 199 6 38 337 45 340 3.03e-42 150
MsG0180003852.01.T01 MTR_8g074050 31.095 283 188 5 38 315 52 332 3.07e-42 150
MsG0180003852.01.T01 MTR_1g043770 35.632 261 158 6 35 291 50 304 3.17e-42 150
MsG0180003852.01.T01 MTR_2g072910 30.034 293 199 5 38 326 51 341 3.57e-42 150
MsG0180003852.01.T01 MTR_4g123020 30.128 312 195 9 35 334 17 317 3.70e-42 149
MsG0180003852.01.T01 MTR_1g043775 32.686 309 176 9 35 326 51 344 4.04e-42 150
MsG0180003852.01.T01 MTR_7g060910 94.444 72 4 0 267 338 124 195 4.34e-42 145
MsG0180003852.01.T01 MTR_3g117420 29.831 295 199 7 38 326 52 344 4.67e-42 150
MsG0180003852.01.T01 MTR_7g062560 31.034 319 197 10 14 325 37 339 1.65e-41 148
MsG0180003852.01.T01 MTR_8g009080 38.053 226 131 6 38 259 94 314 1.71e-41 147
MsG0180003852.01.T01 MTR_8g006930 33.013 312 194 7 37 338 66 372 2.15e-41 148
MsG0180003852.01.T01 MTR_7g451860 31.544 298 172 7 38 322 41 319 2.51e-41 147
MsG0180003852.01.T01 MTR_7g047670 31.544 298 172 7 38 322 41 319 2.51e-41 147
MsG0180003852.01.T01 MTR_7g102720 33.667 300 182 8 37 329 36 325 3.91e-41 147
MsG0180003852.01.T01 MTR_8g041600 37.069 232 135 5 35 260 65 291 4.18e-41 146
MsG0180003852.01.T01 MTR_0009s0480 31.683 303 197 6 38 337 46 341 6.75e-41 147
MsG0180003852.01.T01 MTR_8g074070 30.392 306 204 7 38 338 52 353 7.27e-41 146
MsG0180003852.01.T01 MTR_5g055800 30.746 335 211 12 11 337 20 341 8.84e-41 146
MsG0180003852.01.T01 MTR_2g033270 32.362 309 181 8 23 319 6 298 9.23e-41 145
MsG0180003852.01.T01 MTR_8g009080 37.838 222 129 6 38 255 94 310 1.26e-40 145
MsG0180003852.01.T01 MTR_7g045650 34.909 275 162 9 15 282 36 300 2.54e-40 144
MsG0180003852.01.T01 MTR_7g056393 31.611 329 200 10 28 338 51 372 3.41e-40 145
MsG0180003852.01.T01 MTR_1g102070 30.159 315 204 8 14 316 37 347 4.85e-40 145
MsG0180003852.01.T01 MTR_3g117485 30.980 255 171 4 65 315 7 260 4.95e-40 142
MsG0180003852.01.T01 MTR_5g048850 31.385 325 199 12 14 326 23 335 5.19e-40 144
MsG0180003852.01.T01 MTR_1g081840 29.412 340 217 8 13 337 31 362 9.66e-40 144
MsG0180003852.01.T01 MTR_8g033380 28.657 335 224 7 14 337 32 362 1.06e-39 144
MsG0180003852.01.T01 MTR_5g005570 32.997 297 166 9 38 322 37 312 2.14e-39 142
MsG0180003852.01.T01 MTR_2g102570 27.273 330 216 8 11 326 24 343 1.77e-38 140
MsG0180003852.01.T01 MTR_3g096500 28.869 336 223 5 14 337 44 375 2.30e-38 140
MsG0180003852.01.T01 MTR_8g009170 33.610 241 149 6 26 259 46 282 2.33e-38 138
MsG0180003852.01.T01 MTR_6g464620 30.794 315 202 8 14 316 42 352 5.02e-38 140
MsG0180003852.01.T01 MTR_2g083030 28.205 312 192 7 31 330 30 321 2.26e-37 137
MsG0180003852.01.T01 MTR_2g083000 29.897 291 183 8 38 322 33 308 2.63e-37 136
MsG0180003852.01.T01 MTR_8g009150 29.260 311 184 9 38 338 60 344 2.88e-37 137
MsG0180003852.01.T01 MTR_2g437380 34.783 184 117 2 143 323 63 246 4.45e-37 134
MsG0180003852.01.T01 MTR_3g026150 29.762 252 172 4 85 333 3 252 8.42e-37 133
MsG0180003852.01.T01 MTR_7g078010 30.769 312 201 7 37 338 66 372 1.08e-36 136
MsG0180003852.01.T01 MTR_8g074070 29.605 304 190 8 38 338 52 334 1.11e-36 135
MsG0180003852.01.T01 MTR_8g009120 29.677 310 192 8 38 338 60 352 8.37e-36 133
MsG0180003852.01.T01 MTR_3g088745 28.852 357 222 9 1 337 1 345 9.65e-36 133
MsG0180003852.01.T01 MTR_0009s0050 35.979 189 113 4 143 326 52 237 1.45e-35 130
MsG0180003852.01.T01 MTR_0009s0050 35.979 189 113 4 143 326 52 237 1.84e-35 130
MsG0180003852.01.T01 MTR_8g461330 27.532 316 201 9 34 332 23 327 1.86e-35 132
MsG0180003852.01.T01 MTR_1g086550 28.808 302 189 6 37 319 19 313 1.97e-35 132
MsG0180003852.01.T01 MTR_2g019370 26.935 323 199 8 36 338 26 331 6.27e-35 130
MsG0180003852.01.T01 MTR_1g043770 35.808 229 137 6 35 259 50 272 6.79e-35 129
MsG0180003852.01.T01 MTR_7g056353 29.927 274 178 5 73 338 79 346 1.92e-34 132
MsG0180003852.01.T01 MTR_2g069060 34.034 238 148 6 35 268 24 256 2.38e-34 127
MsG0180003852.01.T01 MTR_4g087130 28.173 323 207 8 24 325 13 331 2.80e-34 129
MsG0180003852.01.T01 MTR_1g043810 33.203 256 158 8 10 259 26 274 3.37e-34 128
MsG0180003852.01.T01 MTR_1g011580 26.205 332 205 8 9 319 24 336 5.11e-34 128
MsG0180003852.01.T01 MTR_2g070870 27.796 313 195 10 34 332 24 319 5.43e-34 127
MsG0180003852.01.T01 MTR_5g055690 34.348 230 138 8 38 260 47 270 8.69e-34 125
MsG0180003852.01.T01 MTR_4g074130 29.412 289 183 9 38 319 40 314 1.81e-33 127
MsG0180003852.01.T01 MTR_3g083370 32.609 230 140 6 37 260 3 223 2.02e-33 124
MsG0180003852.01.T01 MTR_2g068800 31.769 277 150 6 10 274 28 277 2.46e-33 125
MsG0180003852.01.T01 MTR_0056s0160 33.862 189 117 3 143 326 35 220 2.98e-33 123
MsG0180003852.01.T01 MTR_8g093930 27.157 313 218 6 15 319 26 336 6.59e-33 125
MsG0180003852.01.T01 MTR_0009s0050 40.559 143 82 2 185 326 15 155 7.52e-33 120
MsG0180003852.01.T01 MTR_4g115990 30.877 285 165 7 38 315 46 305 8.27e-33 124
MsG0180003852.01.T01 MTR_2g025120 33.913 230 133 8 39 260 5 223 1.20e-32 121
MsG0180003852.01.T01 MTR_1g043775 34.310 239 128 8 35 259 51 274 2.54e-32 123
MsG0180003852.01.T01 MTR_8g009180 34.409 186 118 2 148 329 99 284 1.00e-29 115
MsG0180003852.01.T01 MTR_8g093980 27.358 318 212 8 14 319 37 347 1.27e-29 117
MsG0180003852.01.T01 MTR_5g048850 32.171 258 157 10 14 262 23 271 2.67e-29 114
MsG0180003852.01.T01 MTR_2g072910 30.000 230 155 5 38 263 51 278 3.18e-28 111
MsG0180003852.01.T01 MTR_4g132770 36.242 149 92 2 178 323 10 158 3.79e-28 107
MsG0180003852.01.T01 MTR_0009s0400 39.535 129 77 1 197 324 1 129 7.35e-28 106
MsG0180003852.01.T01 MTR_4g096840 26.885 305 201 9 37 328 28 323 7.37e-28 111
MsG0180003852.01.T01 MTR_3g026150 30.263 228 151 6 37 260 59 282 1.15e-27 110
MsG0180003852.01.T01 MTR_4g011690 25.817 306 206 5 38 331 9 305 2.10e-27 109
MsG0180003852.01.T01 MTR_0009s0480 32.018 228 147 7 37 260 45 268 4.78e-27 107
MsG0180003852.01.T01 MTR_4g011720 26.667 300 210 5 38 331 9 304 6.12e-27 108
MsG0180003852.01.T01 MTR_8g102600 28.750 320 195 10 41 335 15 326 2.35e-26 107
MsG0180003852.01.T01 MTR_4g100600 27.414 321 207 10 37 339 8 320 3.11e-26 107
MsG0180003852.01.T01 MTR_6g088665 27.744 328 203 10 36 338 19 337 1.10e-25 105
MsG0180003852.01.T01 MTR_6g088665 28.746 327 200 9 36 338 19 336 1.88e-25 105
MsG0180003852.01.T01 MTR_3g464530 25.763 295 185 9 38 322 34 304 4.90e-25 103
MsG0180003852.01.T01 MTR_7g078010 31.579 228 147 5 37 260 66 288 7.47e-25 102
MsG0180003852.01.T01 MTR_1g027290 27.103 321 183 12 29 318 17 317 1.50e-24 102
MsG0180003852.01.T01 MTR_6g092620 26.199 271 183 6 37 299 2 263 1.87e-24 101
MsG0180003852.01.T01 MTR_1g043840 40.909 132 75 2 158 287 54 184 4.97e-23 98.2
MsG0180003852.01.T01 MTR_7g077670 25.926 297 196 7 35 319 8 292 3.47e-22 95.5
MsG0180003852.01.T01 MTR_8g102600 31.373 204 126 6 145 335 74 276 1.18e-21 93.2
MsG0180003852.01.T01 MTR_8g030880 26.014 296 192 8 38 319 10 292 1.28e-21 94.0
MsG0180003852.01.T01 MTR_4g021380 25.407 307 200 11 36 323 5 301 3.71e-21 92.8
MsG0180003852.01.T01 MTR_3g108520 24.116 311 215 11 38 333 7 311 4.09e-20 89.7
MsG0180003852.01.T01 MTR_4g100590 24.756 307 195 11 38 324 9 299 1.44e-18 85.5
MsG0180003852.01.T01 MTR_7g090520 26.421 299 192 11 38 319 10 297 1.99e-18 85.1
MsG0180003852.01.T01 MTR_1g027310 24.232 293 170 9 35 318 46 295 2.78e-18 84.7
MsG0180003852.01.T01 MTR_5g025090 25.166 302 211 8 37 335 4 293 2.81e-18 84.3
MsG0180003852.01.T01 MTR_1g032240 40.952 105 51 3 189 292 54 148 7.73e-18 80.5
MsG0180003852.01.T01 MTR_3g464530 25.751 233 149 8 38 260 34 252 6.48e-17 79.7
MsG0180003852.01.T01 MTR_4g021360 23.208 293 205 9 40 323 17 298 1.04e-16 80.1
MsG0180003852.01.T01 MTR_1g011600 25.510 294 191 9 35 308 5 290 1.34e-16 79.3
MsG0180003852.01.T01 MTR_5g025050 25.424 295 189 11 38 321 5 279 4.72e-16 78.2
MsG0180003852.01.T01 MTR_7g016100 45.333 75 41 0 260 334 6 80 2.18e-15 70.9
MsG0180003852.01.T01 MTR_5g027230 24.232 293 197 9 37 321 5 280 4.22e-15 75.1
MsG0180003852.01.T01 MTR_6g035160 28.767 146 99 4 188 329 25 169 1.10e-13 68.9
MsG0180003852.01.T01 MTR_3g040440 43.662 71 40 0 207 277 12 82 2.46e-13 69.3
MsG0180003852.01.T01 MTR_4g100600 27.103 214 137 7 37 238 8 214 5.66e-13 67.8
MsG0180003852.01.T01 MTR_4g094900 24.775 222 141 7 36 234 6 224 5.72e-12 65.5
MsG0180003852.01.T01 MTR_4g100590 27.381 168 108 5 167 325 91 253 9.63e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003852.01.T01 AT4G10500 38.192 343 208 4 1 340 6 347 9.20e-87 265
MsG0180003852.01.T01 AT5G24530 40.882 340 191 6 3 337 4 338 3.38e-84 258
MsG0180003852.01.T01 AT4G10490 39.412 340 201 4 4 339 7 345 8.75e-84 258
MsG0180003852.01.T01 AT5G08640 34.354 294 186 3 37 326 42 332 3.06e-66 212
MsG0180003852.01.T01 AT5G08640 34.354 294 186 3 37 326 42 332 3.06e-66 212
MsG0180003852.01.T01 AT5G05600 37.383 321 188 9 10 320 33 350 1.82e-63 206
MsG0180003852.01.T01 AT2G44800 33.333 333 211 7 10 337 22 348 1.53e-62 203
MsG0180003852.01.T01 AT5G07480 34.494 316 190 7 15 319 24 333 1.77e-61 201
MsG0180003852.01.T01 AT2G36690 33.438 320 204 3 8 319 25 343 2.16e-60 198
MsG0180003852.01.T01 AT2G36690 33.438 320 204 3 8 319 25 343 2.16e-60 198
MsG0180003852.01.T01 AT3G11180 35.938 320 192 7 10 319 62 378 7.62e-60 197
MsG0180003852.01.T01 AT3G11180 35.938 320 192 7 10 319 62 378 1.06e-59 197
MsG0180003852.01.T01 AT3G60290 34.043 329 204 8 15 337 27 348 6.33e-59 194
MsG0180003852.01.T01 AT5G63590 35.889 287 176 4 38 319 14 297 1.40e-58 191
MsG0180003852.01.T01 AT1G06620 37.647 340 186 11 1 329 31 355 3.92e-58 192
MsG0180003852.01.T01 AT3G55970 32.853 347 215 9 10 341 20 363 2.83e-57 190
MsG0180003852.01.T01 AT5G63600 33.000 300 186 5 38 332 33 322 5.01e-56 186
MsG0180003852.01.T01 AT5G63600 32.890 301 186 6 38 332 33 323 4.55e-55 183
MsG0180003852.01.T01 AT5G59530 33.528 343 205 8 10 338 30 363 6.87e-55 184
MsG0180003852.01.T01 AT4G16330 35.017 297 177 7 36 326 65 351 2.17e-54 182
MsG0180003852.01.T01 AT2G38240 31.579 342 200 9 5 321 1 333 3.18e-54 182
MsG0180003852.01.T01 AT3G21420 34.899 298 180 7 38 325 55 348 7.32e-53 178
MsG0180003852.01.T01 AT1G55290 31.288 326 212 5 10 329 32 351 2.03e-52 177
MsG0180003852.01.T01 AT5G59540 34.967 306 175 9 38 329 61 356 4.34e-52 176
MsG0180003852.01.T01 AT1G77330 33.663 303 176 7 37 326 2 292 9.66e-51 171
MsG0180003852.01.T01 AT3G19010 31.778 343 209 7 19 339 8 347 1.48e-50 172
MsG0180003852.01.T01 AT3G19010 31.778 343 209 7 19 339 8 347 1.48e-50 172
MsG0180003852.01.T01 AT3G51240 32.986 288 181 6 19 298 19 302 4.10e-50 171
MsG0180003852.01.T01 AT3G19000 32.203 354 202 10 17 339 6 352 3.05e-49 169
MsG0180003852.01.T01 AT3G13610 30.462 325 215 5 10 329 33 351 3.55e-49 169
MsG0180003852.01.T01 AT1G04350 32.448 339 212 9 10 338 28 359 9.99e-49 167
MsG0180003852.01.T01 AT5G43440 31.977 344 210 10 10 338 30 364 1.06e-48 167
MsG0180003852.01.T01 AT1G03400 34.426 305 181 9 33 330 51 343 1.18e-48 167
MsG0180003852.01.T01 AT2G30830 35.484 310 185 9 38 338 54 357 7.18e-48 165
MsG0180003852.01.T01 AT1G78550 31.173 324 210 9 11 326 25 343 1.33e-47 164
MsG0180003852.01.T01 AT4G16330 39.901 203 114 4 127 326 48 245 1.71e-47 161
MsG0180003852.01.T01 AT1G06620 40.075 267 137 10 1 259 31 282 1.93e-47 162
MsG0180003852.01.T01 AT5G63595 32.246 276 163 5 22 296 10 262 5.17e-47 160
MsG0180003852.01.T01 AT1G04380 33.333 321 200 10 15 329 23 335 6.26e-47 162
MsG0180003852.01.T01 AT4G22880 29.530 298 196 4 10 293 13 310 8.56e-47 162
MsG0180003852.01.T01 AT4G22880 29.530 298 196 4 10 293 13 310 8.56e-47 162
MsG0180003852.01.T01 AT4G22880 29.530 298 196 4 10 293 13 310 8.56e-47 162
MsG0180003852.01.T01 AT1G12010 32.188 320 192 9 32 342 1 304 1.56e-46 160
MsG0180003852.01.T01 AT1G03410 34.576 295 181 8 37 323 56 346 4.08e-46 160
MsG0180003852.01.T01 AT1G06650 32.258 310 198 6 37 338 63 368 4.45e-46 160
MsG0180003852.01.T01 AT1G15550 30.492 305 182 7 38 326 57 347 7.64e-46 160
MsG0180003852.01.T01 AT1G03410 34.576 295 181 8 37 323 93 383 7.89e-46 161
MsG0180003852.01.T01 AT3G61400 30.904 343 214 9 10 335 31 367 8.39e-46 160
MsG0180003852.01.T01 AT3G12900 32.099 324 211 7 10 329 28 346 8.56e-46 160
MsG0180003852.01.T01 AT5G05600 37.121 264 147 9 10 260 33 290 1.31e-45 157
MsG0180003852.01.T01 AT1G17020 29.739 306 207 6 38 337 53 356 2.24e-45 159
MsG0180003852.01.T01 AT5G51810 32.530 332 195 10 11 328 37 353 2.25e-45 159
MsG0180003852.01.T01 AT2G30840 31.746 315 191 8 38 338 57 361 5.40e-45 157
MsG0180003852.01.T01 AT1G62380 32.993 294 182 7 35 323 4 287 7.43e-45 156
MsG0180003852.01.T01 AT5G43450 30.982 326 198 10 25 337 49 360 1.03e-44 157
MsG0180003852.01.T01 AT5G20400 31.157 337 213 10 3 327 7 336 1.20e-44 156
MsG0180003852.01.T01 AT4G25310 32.753 287 178 7 55 334 70 348 1.33e-44 156
MsG0180003852.01.T01 AT4G25300 31.494 308 200 7 34 334 48 351 2.62e-44 155
MsG0180003852.01.T01 AT1G17010 31.000 300 192 7 36 326 52 345 3.03e-44 155
MsG0180003852.01.T01 AT1G49390 30.117 342 219 10 3 330 7 342 5.07e-44 155
MsG0180003852.01.T01 AT5G63580 35.526 228 138 4 37 260 18 240 8.68e-44 151
MsG0180003852.01.T01 AT1G03400 31.532 333 181 10 33 330 51 371 9.36e-44 155
MsG0180003852.01.T01 AT5G12270 29.882 338 223 7 11 340 29 360 1.48e-43 154
MsG0180003852.01.T01 AT3G55970 35.714 266 153 9 10 260 20 282 1.49e-43 152
MsG0180003852.01.T01 AT1G06645 30.671 313 196 8 37 338 76 378 1.52e-43 154
MsG0180003852.01.T01 AT3G19010 29.683 347 181 9 19 339 8 317 1.96e-43 152
MsG0180003852.01.T01 AT5G63580 35.841 226 136 4 37 258 18 238 2.66e-43 150
MsG0180003852.01.T01 AT1G05010 33.210 271 163 8 37 299 3 263 5.46e-43 151
MsG0180003852.01.T01 AT5G54000 28.869 336 223 8 3 327 7 337 1.79e-42 150
MsG0180003852.01.T01 AT2G25450 34.551 301 176 9 38 328 55 344 2.56e-42 150
MsG0180003852.01.T01 AT1G80330 28.909 339 193 10 10 319 14 333 5.67e-42 149
MsG0180003852.01.T01 AT5G43935 30.556 288 178 7 34 319 15 282 6.04e-42 148
MsG0180003852.01.T01 AT2G30840 31.429 315 186 9 38 338 57 355 9.89e-42 149
MsG0180003852.01.T01 AT1G06640 30.599 317 196 10 37 339 63 369 1.20e-41 149
MsG0180003852.01.T01 AT4G21200 30.968 310 177 8 31 322 26 316 1.34e-41 148
MsG0180003852.01.T01 AT1G78550 31.955 266 170 7 67 326 5 265 1.64e-41 146
MsG0180003852.01.T01 AT5G07200 31.068 309 184 8 15 304 37 335 3.31e-41 148
MsG0180003852.01.T01 AT5G07480 33.333 225 140 4 103 319 2 224 3.91e-40 142
MsG0180003852.01.T01 AT1G80340 26.687 326 221 6 11 326 23 340 1.33e-39 143
MsG0180003852.01.T01 AT5G43440 34.733 262 150 9 10 259 30 282 1.64e-39 141
MsG0180003852.01.T01 AT4G21690 28.367 349 204 11 2 326 16 342 2.22e-39 142
MsG0180003852.01.T01 AT5G59540 36.325 234 128 8 38 260 61 284 2.40e-39 140
MsG0180003852.01.T01 AT1G60980 28.358 335 213 9 15 330 36 362 2.58e-39 143
MsG0180003852.01.T01 AT5G20550 29.254 335 220 10 3 324 7 337 8.28e-39 141
MsG0180003852.01.T01 AT4G25420 29.290 338 202 10 11 328 35 355 8.53e-38 139
MsG0180003852.01.T01 AT3G51240 33.929 224 138 5 88 305 6 225 1.11e-37 136
MsG0180003852.01.T01 AT1G78440 28.616 318 199 9 36 338 16 320 2.97e-37 136
MsG0180003852.01.T01 AT5G54000 30.268 261 174 5 71 327 1 257 1.09e-36 133
MsG0180003852.01.T01 AT1G49390 30.303 264 171 7 71 326 1 259 1.99e-36 132
MsG0180003852.01.T01 AT3G19000 31.095 283 153 9 17 268 6 277 2.13e-36 133
MsG0180003852.01.T01 AT5G43450 33.469 245 139 9 25 259 49 279 1.58e-35 130
MsG0180003852.01.T01 AT1G04380 34.661 251 153 9 15 262 23 265 4.22e-35 129
MsG0180003852.01.T01 AT1G30040 27.097 310 203 8 37 334 30 328 1.56e-34 129
MsG0180003852.01.T01 AT1G47990 27.974 311 193 8 32 325 9 305 1.61e-34 129
MsG0180003852.01.T01 AT3G61400 31.061 264 163 7 10 260 31 288 1.17e-33 126
MsG0180003852.01.T01 AT1G06650 33.480 227 143 4 37 259 63 285 1.48e-33 126
MsG0180003852.01.T01 AT3G19010 31.418 261 158 6 19 261 8 265 3.62e-33 125
MsG0180003852.01.T01 AT2G30840 33.476 233 134 6 38 259 57 279 7.29e-33 124
MsG0180003852.01.T01 AT1G02400 28.289 304 198 8 39 330 25 320 8.02e-33 124
MsG0180003852.01.T01 AT5G51810 31.461 267 159 9 11 263 37 293 1.81e-32 123
MsG0180003852.01.T01 AT2G34555 28.247 308 189 9 38 329 27 318 7.07e-32 122
MsG0180003852.01.T01 AT4G25300 35.106 188 115 3 152 334 72 257 1.94e-31 119
MsG0180003852.01.T01 AT1G06640 32.328 232 139 7 37 259 63 285 2.28e-31 120
MsG0180003852.01.T01 AT1G44090 27.742 310 195 7 38 330 63 360 5.69e-31 120
MsG0180003852.01.T01 AT1G06640 32.018 228 137 7 37 255 63 281 1.09e-30 118
MsG0180003852.01.T01 AT1G50960 29.545 264 163 7 38 290 40 291 3.44e-30 117
MsG0180003852.01.T01 AT4G25310 27.972 286 165 6 55 334 70 320 1.57e-29 115
MsG0180003852.01.T01 AT2G19590 27.778 270 175 7 38 299 11 268 3.51e-28 112
MsG0180003852.01.T01 AT3G50210 27.835 291 179 9 37 298 7 295 9.14e-26 105
MsG0180003852.01.T01 AT3G50210 27.835 291 179 9 37 298 7 295 9.14e-26 105
MsG0180003852.01.T01 AT3G50210 27.835 291 179 9 37 298 7 295 9.14e-26 105
MsG0180003852.01.T01 AT1G52820 26.537 309 189 9 38 326 12 302 4.40e-25 103
MsG0180003852.01.T01 AT4G25420 28.302 265 158 9 11 255 35 287 7.10e-25 102
MsG0180003852.01.T01 AT3G49630 26.300 327 204 12 34 330 5 324 5.52e-24 100
MsG0180003852.01.T01 AT3G46500 26.524 328 198 11 36 338 15 324 1.14e-23 99.8
MsG0180003852.01.T01 AT4G23340 28.213 319 203 11 38 341 10 317 2.50e-23 99.0
MsG0180003852.01.T01 AT3G49620 26.557 305 182 11 34 306 30 324 5.87e-23 98.6
MsG0180003852.01.T01 AT3G49630 26.214 309 201 11 42 330 19 320 2.36e-22 96.3
MsG0180003852.01.T01 AT1G30040 28.085 235 147 7 37 260 30 253 2.65e-22 95.1
MsG0180003852.01.T01 AT2G19590 27.500 240 154 7 68 299 26 253 2.78e-22 95.5
MsG0180003852.01.T01 AT4G03070 26.797 306 198 11 38 328 14 308 3.57e-22 95.9
MsG0180003852.01.T01 AT1G52800 25.524 286 202 5 35 314 7 287 2.24e-21 93.2
MsG0180003852.01.T01 AT1G02400 28.814 236 149 7 39 263 25 252 8.40e-21 90.9
MsG0180003852.01.T01 AT3G47190 25.223 337 199 10 21 332 7 315 8.41e-21 92.0
MsG0180003852.01.T01 AT3G46490 25.962 312 202 11 36 324 15 320 9.63e-21 91.7
MsG0180003852.01.T01 AT5G58660 24.522 314 188 9 38 322 34 327 3.75e-20 90.5
MsG0180003852.01.T01 AT3G46500 29.327 208 130 8 143 338 48 250 1.50e-19 87.0
MsG0180003852.01.T01 AT3G46500 29.327 208 130 8 143 338 48 250 1.50e-19 87.0
MsG0180003852.01.T01 AT3G46500 29.630 189 120 6 159 338 4 188 6.38e-19 84.0
MsG0180003852.01.T01 AT2G06960 34.559 136 75 3 191 326 24 145 4.22e-18 80.5
MsG0180003852.01.T01 AT4G16765 27.638 199 131 4 139 325 44 241 6.07e-18 82.4
MsG0180003852.01.T01 AT4G16765 27.638 199 131 4 139 325 44 241 6.07e-18 82.4
MsG0180003852.01.T01 AT4G16765 27.638 199 131 4 139 325 44 241 6.07e-18 82.4
MsG0180003852.01.T01 AT1G14130 27.397 292 181 10 38 317 9 281 7.47e-18 83.2
MsG0180003852.01.T01 AT1G35190 27.393 303 191 11 36 315 10 306 1.65e-17 82.4
MsG0180003852.01.T01 AT4G23340 29.949 197 125 6 158 341 3 199 1.99e-17 80.1
MsG0180003852.01.T01 AT3G49630 30.729 192 125 7 145 330 62 251 4.36e-17 80.1
MsG0180003852.01.T01 AT4G16765 28.108 185 120 4 139 311 44 227 4.66e-17 79.7
MsG0180003852.01.T01 AT3G50210 32.099 162 102 4 145 298 52 213 6.14e-17 79.7
MsG0180003852.01.T01 AT4G16765 33.607 122 75 2 209 325 75 195 1.15e-15 75.1
MsG0180003852.01.T01 AT1G28030 25.166 302 194 11 37 319 12 300 2.40e-15 76.3
MsG0180003852.01.T01 AT3G46490 25.362 276 177 11 36 288 15 284 4.47e-15 75.5
MsG0180003852.01.T01 AT3G46480 33.088 136 82 3 210 340 155 286 4.58e-15 75.1
MsG0180003852.01.T01 AT3G46500 25.000 280 170 10 36 290 15 279 5.47e-15 74.7
MsG0180003852.01.T01 AT1G52820 26.337 243 141 9 38 260 12 236 9.76e-14 70.9
MsG0180003852.01.T01 AT4G16770 28.767 219 129 9 38 239 22 230 2.61e-13 69.3
MsG0180003852.01.T01 AT3G46500 33.333 117 69 3 227 338 114 226 2.30e-12 66.2
MsG0180003852.01.T01 AT4G22870 38.462 65 40 0 229 293 2 66 7.35e-11 59.3

Find 69 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGAGTTTGGATTCTTTC+AGG 0.133818 1:-69240457 MsG0180003852.01.T01:intron
CTCGACTGAAGTTAAGAAAT+TGG 0.163351 1:-69239885 MsG0180003852.01.T01:CDS
ATCTGGCCTTCAAGTGTTTA+AGG 0.181391 1:-69239675 MsG0180003852.01.T01:CDS
GTAATTCCTAATGTCAAATT+TGG 0.183850 1:+69239746 None:intergenic
AGATTTCCTGGTCTTGATTC+TGG 0.186437 1:+69240576 None:intergenic
TACATCATCTTGTAGTAAAA+TGG 0.299858 1:+69239697 None:intergenic
ATCAAAGCTTCTGAGGAGTT+TGG 0.318749 1:-69240468 MsG0180003852.01.T01:CDS
TTACTACAAGATGATGTATC+TGG 0.342460 1:-69239692 MsG0180003852.01.T01:CDS
CCTAATGTCAAATTTGGTTC+CGG 0.342510 1:+69239752 None:intergenic
CCGGAACCAAATTTGACATT+AGG 0.345897 1:-69239752 MsG0180003852.01.T01:CDS
AGTAAACATCTTACATGGTT+TGG 0.350459 1:+69240214 None:intergenic
ACATGGTTTGGAAGGGTCAT+TGG 0.352075 1:+69240226 None:intergenic
GTTTCTTTCATTTGATTCTC+CGG 0.354734 1:+69240308 None:intergenic
ACAGTGAGAAGGTTCATCTT+TGG 0.363652 1:-69240175 MsG0180003852.01.T01:CDS
TTCATTTACCTGTATGTAGT+TGG 0.364146 1:+69240089 None:intergenic
CTCAGGGACAGATTGGAAAT+TGG 0.364543 1:+69240614 None:intergenic
ATCTTTGGAGAGACAATCTT+AGG 0.366368 1:-69240160 MsG0180003852.01.T01:CDS
TCGACTGAAGTTAAGAAATT+GGG 0.389021 1:-69239884 MsG0180003852.01.T01:CDS
ATTGAAATCCTTGTATTTGA+AGG 0.392415 1:+69238974 None:intergenic
CTTCATCCTTAAACACTTGA+AGG 0.398612 1:+69239669 None:intergenic
GAAGGGCTTGGCCTAGAGTA+TGG 0.398652 1:-69239836 MsG0180003852.01.T01:CDS
TCGAGGATCATGAATTTAAT+CGG 0.412066 1:-69239860 MsG0180003852.01.T01:CDS
AATTTAATCGGTGAAGGGCT+TGG 0.419608 1:-69239848 MsG0180003852.01.T01:CDS
TGATCTTAGTGAAGCACAAA+AGG 0.420656 1:-69240520 MsG0180003852.01.T01:CDS
GTCAAATTTGGTTCCGGACA+TGG 0.446239 1:+69239758 None:intergenic
CAACGTAGGCTACCAGTTGC+AGG 0.447703 1:-69239606 MsG0180003852.01.T01:intron
ATGTGTTGCCACTGCTCTAA+AGG 0.451551 1:+69240125 None:intergenic
TAGAGCAGTGGCAACACATA+TGG 0.451727 1:-69240121 MsG0180003852.01.T01:CDS
CTGGAATGCTACTGTTGAAT+GGG 0.456940 1:+69240547 None:intergenic
AGTAAAATGGTGATGAGGTT+AGG 0.459048 1:+69239710 None:intergenic
TGTAGTCCTCAGGGACAGAT+TGG 0.468965 1:+69240607 None:intergenic
AGCATATTTGTTAAAGTAGT+GGG 0.473890 1:+69238950 None:intergenic
GGTGGAAATATGTAGTCCTC+AGG 0.474293 1:+69240597 None:intergenic
TTTCTTTCATTTGATTCTCC+GGG 0.477060 1:+69240309 None:intergenic
TAATCATTATCCACCATGTC+CGG 0.479606 1:-69239771 MsG0180003852.01.T01:CDS
ATAAACTTATTACAAGTTGT+TGG 0.481123 1:-69240638 MsG0180003852.01.T01:CDS
GAGGTTAGGATCTGAGTGTT+TGG 0.489595 1:+69239724 None:intergenic
CTACTAGTAAACATCTTACA+TGG 0.497237 1:+69240209 None:intergenic
CTGAAAATCCAACTACATAC+AGG 0.503820 1:-69240097 MsG0180003852.01.T01:intron
ACTGGAATGCTACTGTTGAA+TGG 0.510946 1:+69240546 None:intergenic
AACATCTTACATGGTTTGGA+AGG 0.513427 1:+69240218 None:intergenic
CAGCATATTTGTTAAAGTAG+TGG 0.520933 1:+69238949 None:intergenic
AAGTTAAGAAATTGGGTTCG+AGG 0.524374 1:-69239877 MsG0180003852.01.T01:CDS
TGTCAAAATAACCATACTCT+AGG 0.529302 1:+69239825 None:intergenic
ATCATGAATTTAATCGGTGA+AGG 0.534424 1:-69239854 MsG0180003852.01.T01:CDS
GATTATCAATCACGGAGTCC+CGG 0.535963 1:-69240327 MsG0180003852.01.T01:CDS
CGTGGTGCTGAAATCATTTG+AGG 0.541241 1:-69238919 MsG0180003852.01.T01:CDS
AACCGACAAAAGAATTGAGC+CGG 0.544982 1:+69239793 None:intergenic
TTTCCTGGTCTTGATTCTGG+TGG 0.561057 1:+69240579 None:intergenic
TCATCAGTGATAGCTTGTGC+TGG 0.570336 1:+69239020 None:intergenic
GATCTTAGTGAAGCACAAAA+GGG 0.580273 1:-69240519 MsG0180003852.01.T01:CDS
AATGTTATCCTTTAGAGCAG+TGG 0.582996 1:-69240133 MsG0180003852.01.T01:CDS
TGAAGAGTGGATCGCTGTTG+AGG 0.587321 1:-69239651 MsG0180003852.01.T01:CDS
TCATGAATTTAATCGGTGAA+GGG 0.589067 1:-69239853 MsG0180003852.01.T01:CDS
TTTCCACCAGAATCAAGACC+AGG 0.605178 1:-69240582 MsG0180003852.01.T01:CDS
GCTTCACTAAGATCAATCAC+TGG 0.610651 1:+69240528 None:intergenic
ACATCTTACATGGTTTGGAA+GGG 0.612898 1:+69240219 None:intergenic
GTGGTACAGATAATTAGTAA+TGG 0.613624 1:-69239143 MsG0180003852.01.T01:intron
TTGAAGTAGATTATCAATCA+CGG 0.614301 1:-69240335 MsG0180003852.01.T01:intron
CTTGTAGTAAAATGGTGATG+AGG 0.624893 1:+69239705 None:intergenic
GTGGAAATATGTAGTCCTCA+GGG 0.629451 1:+69240598 None:intergenic
AAGTGTTTAAGGATGAAGAG+TGG 0.632885 1:-69239664 MsG0180003852.01.T01:CDS
AAATTTGGTTCCGGACATGG+TGG 0.647734 1:+69239761 None:intergenic
TCGACGTTACAATCATCTGA+AGG 0.651171 1:+69239044 None:intergenic
CAAATATGCTGACACAGACG+TGG 0.662045 1:-69238937 MsG0180003852.01.T01:CDS
ACTGCTCTAAAGGATAACAT+TGG 0.664218 1:+69240135 None:intergenic
CAATTTCCAATCTGTCCCTG+AGG 0.665335 1:-69240613 MsG0180003852.01.T01:CDS
TATCAACTATGACAGTGAGA+AGG 0.671068 1:-69240186 MsG0180003852.01.T01:CDS
ACGTTGATGACAAAAGCATG+AGG 0.712255 1:+69239623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAAAATGTCTTAAAAATT+AGG + Chr1:69240187-69240206 None:intergenic 15.0%
!!! TTTGTTTATTTTTTGACAAA+AGG - Chr1:69239972-69239991 MsG0180003852.01.T01:intron 15.0%
!! ACAGGTAAATGAATATAATT+TGG - Chr1:69239468-69239487 MsG0180003852.01.T01:intron 20.0%
!! ATAAACTTATTACAAGTTGT+TGG - Chr1:69238909-69238928 MsG0180003852.01.T01:CDS 20.0%
!! TAAATATTTAACTAGTGCAT+TGG + Chr1:69239136-69239155 None:intergenic 20.0%
!! TATTTGAAGGACTTAAAAAT+TGG + Chr1:69240563-69240582 None:intergenic 20.0%
!! TGTTTAATGGAAATTTAAGT+TGG - Chr1:69239188-69239207 MsG0180003852.01.T01:intron 20.0%
!!! ATTTGAATCATTTCTAGAAT+AGG + Chr1:69240284-69240303 None:intergenic 20.0%
!!! TGATTTTTGAAATGATTTCT+CGG + Chr1:69240238-69240257 None:intergenic 20.0%
!!! TTTGAATCATTTCTAGAATA+GGG + Chr1:69240283-69240302 None:intergenic 20.0%
! AAAAAATTTGTGATCAAGCA+TGG - Chr1:69240052-69240071 MsG0180003852.01.T01:intron 25.0%
! ATTGAAATCCTTGTATTTGA+AGG + Chr1:69240576-69240595 None:intergenic 25.0%
! GTAATTCCTAATGTCAAATT+TGG + Chr1:69239804-69239823 None:intergenic 25.0%
! TACATCATCTTGTAGTAAAA+TGG + Chr1:69239853-69239872 None:intergenic 25.0%
! TTGAAGTAGATTATCAATCA+CGG - Chr1:69239212-69239231 MsG0180003852.01.T01:intron 25.0%
!! AGAAACAATGAATGTTTTCA+AGG - Chr1:69239256-69239275 MsG0180003852.01.T01:intron 25.0%
!! AGCATATTTGTTAAAGTAGT+GGG + Chr1:69240600-69240619 None:intergenic 25.0%
!! TCATATTCGATTTTGTAATG+AGG + Chr1:69240027-69240046 None:intergenic 25.0%
!!! TATTTTGACAATGATCTTAC+CGG - Chr1:69239735-69239754 MsG0180003852.01.T01:CDS 25.0%
!!! TCATTAGAATAGACCTTTTT+TGG - Chr1:69239618-69239637 MsG0180003852.01.T01:CDS 25.0%
!!! TTTTAAGTCCTTCAAATACA+AGG - Chr1:69240565-69240584 MsG0180003852.01.T01:CDS 25.0%
AAAAATGATCAAAGCTTCTG+AGG - Chr1:69239072-69239091 MsG0180003852.01.T01:CDS 30.0%
AGTAAACATCTTACATGGTT+TGG + Chr1:69239336-69239355 None:intergenic 30.0%
ATCATGAATTTAATCGGTGA+AGG - Chr1:69239693-69239712 MsG0180003852.01.T01:CDS 30.0%
CATGTTGCATACATGTTTAA+TGG - Chr1:69239175-69239194 MsG0180003852.01.T01:intron 30.0%
CTACTAGTAAACATCTTACA+TGG + Chr1:69239341-69239360 None:intergenic 30.0%
GTGGTACAGATAATTAGTAA+TGG - Chr1:69240404-69240423 MsG0180003852.01.T01:intron 30.0%
GTTTCTTTCATTTGATTCTC+CGG + Chr1:69239242-69239261 None:intergenic 30.0%
TCAAAGTTCATATGTGAAAG+AGG + Chr1:69240368-69240387 None:intergenic 30.0%
TCATGAATTTAATCGGTGAA+GGG - Chr1:69239694-69239713 MsG0180003852.01.T01:CDS 30.0%
TCGACTGAAGTTAAGAAATT+GGG - Chr1:69239663-69239682 MsG0180003852.01.T01:CDS 30.0%
TCGAGGATCATGAATTTAAT+CGG - Chr1:69239687-69239706 MsG0180003852.01.T01:CDS 30.0%
TGTCAAAATAACCATACTCT+AGG + Chr1:69239725-69239744 None:intergenic 30.0%
TTACTACAAGATGATGTATC+TGG - Chr1:69239855-69239874 MsG0180003852.01.T01:CDS 30.0%
TTCATTTACCTGTATGTAGT+TGG + Chr1:69239461-69239480 None:intergenic 30.0%
TTGAAGGACTTAAAAATTGG+TGG + Chr1:69240560-69240579 None:intergenic 30.0%
TTTCTTTCATTTGATTCTCC+GGG + Chr1:69239241-69239260 None:intergenic 30.0%
! AAACTTTTCTTGTACTCATC+AGG + Chr1:69239296-69239315 None:intergenic 30.0%
! CAGCATATTTGTTAAAGTAG+TGG + Chr1:69240601-69240620 None:intergenic 30.0%
!! AACAATGAATGTTTTCAAGG+AGG - Chr1:69239259-69239278 MsG0180003852.01.T01:intron 30.0%
!! TCACTATATCGATTGCATTT+TGG - Chr1:69240315-69240334 MsG0180003852.01.T01:CDS 30.0%
!!! TGACAAATTTTGTTGACTTG+TGG - Chr1:69240385-69240404 MsG0180003852.01.T01:intron 30.0%
!!! TTTTGAAATGATTTCTCGGA+TGG + Chr1:69240234-69240253 None:intergenic 30.0%
AAGTGTTTAAGGATGAAGAG+TGG - Chr1:69239883-69239902 MsG0180003852.01.T01:CDS 35.0%
AAGTTAAGAAATTGGGTTCG+AGG - Chr1:69239670-69239689 MsG0180003852.01.T01:CDS 35.0%
CATATGTGAAAGAGGCAAAA+TGG + Chr1:69240360-69240379 None:intergenic 35.0%
CTCGACTGAAGTTAAGAAAT+TGG - Chr1:69239662-69239681 MsG0180003852.01.T01:CDS 35.0%
CTGAAAATCCAACTACATAC+AGG - Chr1:69239450-69239469 MsG0180003852.01.T01:intron 35.0%
CTTCATCCTTAAACACTTGA+AGG + Chr1:69239881-69239900 None:intergenic 35.0%
GATCTTAGTGAAGCACAAAA+GGG - Chr1:69239028-69239047 MsG0180003852.01.T01:CDS 35.0%
TAATCATTATCCACCATGTC+CGG - Chr1:69239776-69239795 MsG0180003852.01.T01:CDS 35.0%
TATCAACTATGACAGTGAGA+AGG - Chr1:69239361-69239380 MsG0180003852.01.T01:intron 35.0%
TGATCTTAGTGAAGCACAAA+AGG - Chr1:69239027-69239046 MsG0180003852.01.T01:CDS 35.0%
TGTGATCAAGCATGGATAAT+CGG - Chr1:69240060-69240079 MsG0180003852.01.T01:intron 35.0%
! AACATCTTACATGGTTTGGA+AGG + Chr1:69239332-69239351 None:intergenic 35.0%
! ACATCTTACATGGTTTGGAA+GGG + Chr1:69239331-69239350 None:intergenic 35.0%
! AGTAAAATGGTGATGAGGTT+AGG + Chr1:69239840-69239859 None:intergenic 35.0%
! ATCTTTGGAGAGACAATCTT+AGG - Chr1:69239387-69239406 MsG0180003852.01.T01:intron 35.0%
! CCTAATGTCAAATTTGGTTC+CGG + Chr1:69239798-69239817 None:intergenic 35.0%
! CTGTATGTAGTTGGATTTTC+AGG + Chr1:69239452-69239471 None:intergenic 35.0%
! CTTGTAGTAAAATGGTGATG+AGG + Chr1:69239845-69239864 None:intergenic 35.0%
!! AATGTTATCCTTTAGAGCAG+TGG - Chr1:69239414-69239433 MsG0180003852.01.T01:intron 35.0%
!! ACTGCTCTAAAGGATAACAT+TGG + Chr1:69239415-69239434 None:intergenic 35.0%
!!! AATGGGATTTTGAGATTTCC+TGG + Chr1:69238986-69239005 None:intergenic 35.0%
!!! AGAATAGACCTTTTTTGGCA+GGG - Chr1:69239623-69239642 MsG0180003852.01.T01:CDS 35.0%
!!! TAGAATAGACCTTTTTTGGC+AGG - Chr1:69239622-69239641 MsG0180003852.01.T01:CDS 35.0%
AACCGACAAAAGAATTGAGC+CGG + Chr1:69239757-69239776 None:intergenic 40.0%
AATTTAATCGGTGAAGGGCT+TGG - Chr1:69239699-69239718 MsG0180003852.01.T01:CDS 40.0%
ACAGTGAGAAGGTTCATCTT+TGG - Chr1:69239372-69239391 MsG0180003852.01.T01:intron 40.0%
ACTGGAATGCTACTGTTGAA+TGG + Chr1:69239004-69239023 None:intergenic 40.0%
CCGGAACCAAATTTGACATT+AGG - Chr1:69239795-69239814 MsG0180003852.01.T01:CDS 40.0%
CTGGAATGCTACTGTTGAAT+GGG + Chr1:69239003-69239022 None:intergenic 40.0%
GCTTCACTAAGATCAATCAC+TGG + Chr1:69239022-69239041 None:intergenic 40.0%
GTGGAAATATGTAGTCCTCA+GGG + Chr1:69238952-69238971 None:intergenic 40.0%
TCGACGTTACAATCATCTGA+AGG + Chr1:69240506-69240525 None:intergenic 40.0%
TGAAATGATTTCTCGGATGG+TGG + Chr1:69240231-69240250 None:intergenic 40.0%
TGAGCTACTATATGTACTCG+AGG + Chr1:69239601-69239620 None:intergenic 40.0%
TGAGGAGTTTGGATTCTTTC+AGG - Chr1:69239090-69239109 MsG0180003852.01.T01:CDS 40.0%
! ATCAAAGCTTCTGAGGAGTT+TGG - Chr1:69239079-69239098 MsG0180003852.01.T01:CDS 40.0%
! ATCTGGCCTTCAAGTGTTTA+AGG - Chr1:69239872-69239891 MsG0180003852.01.T01:CDS 40.0%
! CAAAAAAGTGTACCTGCAAC+TGG + Chr1:69239956-69239975 None:intergenic 40.0%
! CATGCTTTTGTCATCAACGT+AGG - Chr1:69239927-69239946 MsG0180003852.01.T01:intron 40.0%
!! ACGTTGATGACAAAAGCATG+AGG + Chr1:69239927-69239946 None:intergenic 40.0%
!! AGATTTCCTGGTCTTGATTC+TGG + Chr1:69238974-69238993 None:intergenic 40.0%
!!! TACCGGCTCAATTCTTTTGT+CGG - Chr1:69239752-69239771 MsG0180003852.01.T01:CDS 40.0%
AACACACTCCCTGCCAAAAA+AGG + Chr1:69239634-69239653 None:intergenic 45.0%
ATGTAGCTCATTGTTCTCCG+AGG + Chr1:69240086-69240105 None:intergenic 45.0%
ATGTGTTGCCACTGCTCTAA+AGG + Chr1:69239425-69239444 None:intergenic 45.0%
CAAATATGCTGACACAGACG+TGG - Chr1:69240610-69240629 MsG0180003852.01.T01:CDS 45.0%
CAATTTCCAATCTGTCCCTG+AGG - Chr1:69238934-69238953 MsG0180003852.01.T01:CDS 45.0%
CTCAGGGACAGATTGGAAAT+TGG + Chr1:69238936-69238955 None:intergenic 45.0%
GAGGTTAGGATCTGAGTGTT+TGG + Chr1:69239826-69239845 None:intergenic 45.0%
GATTATCAATCACGGAGTCC+CGG - Chr1:69239220-69239239 MsG0180003852.01.T01:intron 45.0%
GGTGGAAATATGTAGTCCTC+AGG + Chr1:69238953-69238972 None:intergenic 45.0%
TAGAGCAGTGGCAACACATA+TGG - Chr1:69239426-69239445 MsG0180003852.01.T01:intron 45.0%
TTTCCACCAGAATCAAGACC+AGG - Chr1:69238965-69238984 MsG0180003852.01.T01:CDS 45.0%
! AAATTTGGTTCCGGACATGG+TGG + Chr1:69239789-69239808 None:intergenic 45.0%
! AATGATTTCTCGGATGGTGG+TGG + Chr1:69240228-69240247 None:intergenic 45.0%
! ACATGGTTTGGAAGGGTCAT+TGG + Chr1:69239324-69239343 None:intergenic 45.0%
! CGTGGTGCTGAAATCATTTG+AGG - Chr1:69240628-69240647 MsG0180003852.01.T01:CDS 45.0%
! GTCAAATTTGGTTCCGGACA+TGG + Chr1:69239792-69239811 None:intergenic 45.0%
! TCATCAGTGATAGCTTGTGC+TGG + Chr1:69240530-69240549 None:intergenic 45.0%
!! TTTCCTGGTCTTGATTCTGG+TGG + Chr1:69238971-69238990 None:intergenic 45.0%
!!! TTTTTTGGCAGGGAGTGTGT+TGG - Chr1:69239633-69239652 MsG0180003852.01.T01:CDS 45.0%
CAAGCATGGATAATCGGCCT+CGG - Chr1:69240066-69240085 MsG0180003852.01.T01:intron 50.0%
TGAAGAGTGGATCGCTGTTG+AGG - Chr1:69239896-69239915 MsG0180003852.01.T01:CDS 50.0%
TGTAGTCCTCAGGGACAGAT+TGG + Chr1:69238943-69238962 None:intergenic 50.0%
CAACGTAGGCTACCAGTTGC+AGG - Chr1:69239941-69239960 MsG0180003852.01.T01:intron 55.0%
GAAGGGCTTGGCCTAGAGTA+TGG - Chr1:69239711-69239730 MsG0180003852.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 69238905 69240664 69238905 ID=MsG0180003852.01;Name=MsG0180003852.01
Chr1 mRNA 69238905 69240664 69238905 ID=MsG0180003852.01.T01;Parent=MsG0180003852.01;Name=MsG0180003852.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|342
Chr1 exon 69240458 69240664 69240458 ID=MsG0180003852.01.T01:exon:26938;Parent=MsG0180003852.01.T01
Chr1 exon 69240098 69240348 69240098 ID=MsG0180003852.01.T01:exon:26939;Parent=MsG0180003852.01.T01
Chr1 exon 69239607 69239925 69239607 ID=MsG0180003852.01.T01:exon:26940;Parent=MsG0180003852.01.T01
Chr1 exon 69238905 69239156 69238905 ID=MsG0180003852.01.T01:exon:26941;Parent=MsG0180003852.01.T01
Chr1 CDS 69240458 69240664 69240458 ID=MsG0180003852.01.T01:cds;Parent=MsG0180003852.01.T01
Chr1 CDS 69240098 69240348 69240098 ID=MsG0180003852.01.T01:cds;Parent=MsG0180003852.01.T01
Chr1 CDS 69239607 69239925 69239607 ID=MsG0180003852.01.T01:cds;Parent=MsG0180003852.01.T01
Chr1 CDS 69238905 69239156 69238905 ID=MsG0180003852.01.T01:cds;Parent=MsG0180003852.01.T01
Gene Sequence

>MsG0180003852.01.T01

ATGGATAAACTTATTACAAGTTGTTGGTCCAATTTCCAATCTGTCCCTGAGGACTACATATTTCCACCAGAATCAAGACCAGGAAATCTCAAAATCCCATTCAACAGTAGCATTCCAGTGATTGATCTTAGTGAAGCACAAAAGGGTGATAGAGCTAATATAATTCAAAAAATGATCAAAGCTTCTGAGGAGTTTGGATTCTTTCAGATTATCAATCACGGAGTCCCGGAGAATCAAATGAAAGAAACAATGAATGTTTTCAAGGAGGTGTTTCATATGCCTGATGAGTACAAGAAAAGTTTGTGTTCCAATGACCCTTCCAAACCATGTAAGATGTTTACTAGTAGTATCAACTATGACAGTGAGAAGGTTCATCTTTGGAGAGACAATCTTAGGCACCAATGTTATCCTTTAGAGCAGTGGCAACACATATGGCCTGAAAATCCAACTACATACAGGGAGTGTGTTGGTGATTTCTCGACTGAAGTTAAGAAATTGGGTTCGAGGATCATGAATTTAATCGGTGAAGGGCTTGGCCTAGAGTATGGTTATTTTGACAATGATCTTACCGGCTCAATTCTTTTGTCGGTTAATCATTATCCACCATGTCCGGAACCAAATTTGACATTAGGAATTACCAAACACTCAGATCCTAACCTCATCACCATTTTACTACAAGATGATGTATCTGGCCTTCAAGTGTTTAAGGATGAAGAGTGGATCGCTGTTGAGGCTCTTCCTCATGCTTTTGTCATCAACGTAGGCTACCAGTTGCAGATAATTAGTAATGGTAAGCTAAAAAGTGCTGAGCATAGAGCTGTGACAAATTCAAGTCATGCACGTACAACTGCTGCATTTTTTGTAGCTCCTTCAGATGATTGTAACGTCGAGCCAGCACAAGCTATCACTGATGAACATAATCCACCAATTTTTAAGTCCTTCAAATACAAGGATTTCAATTCCCACTACTTTAACAAATATGCTGACACAGACGTGGTGCTGAAATCATTTGAGGCACCAAAGAATTAA
Protein sequence

>MsG0180003852.01.T01

MDKLITSCWSNFQSVPEDYIFPPESRPGNLKIPFNSSIPVIDLSEAQKGDRANIIQKMIKASEEFGFFQIINHGVPENQMKETMNVFKEVFHMPDEYKKSLCSNDPSKPCKMFTSSINYDSEKVHLWRDNLRHQCYPLEQWQHIWPENPTTYRECVGDFSTEVKKLGSRIMNLIGEGLGLEYGYFDNDLTGSILLSVNHYPPCPEPNLTLGITKHSDPNLITILLQDDVSGLQVFKDEEWIAVEALPHAFVINVGYQLQIISNGKLKSAEHRAVTNSSHARTTAAFFVAPSDDCNVEPAQAITDEHNPPIFKSFKYKDFNSHYFNKYADTDVVLKSFEAPKN*