AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017901.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017901.01.T01 MTR_3g114870 87.150 428 53 1 1 426 1 428 0.0 775
MsG0380017901.01.T01 MTR_3g114890 81.034 406 51 3 22 427 54 433 0.0 649
MsG0380017901.01.T02 MTR_3g114870 86.908 359 45 1 1 357 70 428 0.0 654
MsG0380017901.01.T02 MTR_3g114890 79.888 358 46 3 1 358 102 433 0.0 563
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 96 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCAGCTTCATCAAATT+TGG 0.134844 3:+102022222 None:intergenic
TGGGCTTCAGGTTGGCAATT+TGG 0.174820 3:+102022974 None:intergenic
TTGGCTTGTGTTTCCAAATA+TGG 0.194285 3:-102021843 MsG0380017901.01.T01:CDS
CATTTAGCGTCCTTGATTTA+AGG 0.195088 3:-102022837 MsG0380017901.01.T01:CDS
AACTTCTTTAGCTGATAATA+TGG 0.239934 3:+102022318 None:intergenic
GTTGTATATGCACCCATATT+TGG 0.244783 3:+102021830 None:intergenic
CGGAGGAGGAGCTCACATTT+TGG 0.255015 3:+102022514 None:intergenic
GGGCTTCAGGTTGGCAATTT+GGG 0.261179 3:+102022975 None:intergenic
GACAAGGATCTTGTTGTTAT+TGG 0.275664 3:-102022163 MsG0380017901.01.T01:CDS
AAAATGAAAATTCTTGATAT+TGG 0.275753 3:-102022265 MsG0380017901.01.T01:CDS
GGAGCAAAACCCATTGAAAT+TGG 0.277439 3:+102021796 None:intergenic
GCGGCTGGCGCAGTCGAAAT+TGG 0.278904 3:+102022699 None:intergenic
TTACACTTAACAGCGTAAAA+AGG 0.288780 3:+102022763 None:intergenic
ATTGGTGGTGGATTCACTTC+TGG 0.295664 3:-102022247 MsG0380017901.01.T01:CDS
CTTAAATCAAGGACGCTAAA+TGG 0.304128 3:+102022838 None:intergenic
GGTGCATATACAACTTCTTC+TGG 0.309142 3:-102021821 MsG0380017901.01.T01:CDS
GCTTCTCAAAGCTGCTGATA+TGG 0.333279 3:-102022413 MsG0380017901.01.T01:CDS
TGGATCAATGATGGAATTTA+CGG 0.338014 3:-102022052 MsG0380017901.01.T01:CDS
GGATAAAACGGATTCAATTT+CGG 0.338625 3:+102022675 None:intergenic
GCATCTTTGAGTGTCAAATA+TGG 0.350668 3:-102022460 MsG0380017901.01.T01:CDS
ATTTAGCGTCCTTGATTTAA+GGG 0.350890 3:-102022836 MsG0380017901.01.T01:CDS
CAATCGTTCACCTCAAGTTC+AGG 0.366769 3:+102021863 None:intergenic
AATCCAAACATTTCACTTGT+AGG 0.370462 3:-102022742 MsG0380017901.01.T01:CDS
TAACCACCTTTGACTCTGTT+GGG 0.375313 3:-102022564 MsG0380017901.01.T01:CDS
TCTTCTGGAACCAATTTCAA+TGG 0.383904 3:-102021806 MsG0380017901.01.T01:CDS
TCTTTGCATGTAACATTCTC+AGG 0.395435 3:+102021962 None:intergenic
ACATGCACCCCACTTAGGTT+TGG 0.403271 3:-102021992 MsG0380017901.01.T01:CDS
ATCAGCAGCTTTGAGAAGCT+TGG 0.412439 3:+102022417 None:intergenic
AATTTGGGATAGGGATTCTT+CGG 0.416647 3:+102022990 None:intergenic
CTTGTTGTTATTGGTGAACC+TGG 0.425304 3:-102022154 MsG0380017901.01.T01:CDS
GGATTCAATTTCGGTGCGGC+TGG 0.426884 3:+102022684 None:intergenic
ATGGCGGGACTTAAAGTAAC+TGG 0.431307 3:-102022394 MsG0380017901.01.T01:CDS
CTTCTGGAACCAATTTCAAT+GGG 0.439459 3:-102021805 MsG0380017901.01.T01:CDS
CTTGCATGTTCAAGTCTTGT+CGG 0.440058 3:-102021755 MsG0380017901.01.T01:CDS
TCAGGTTGGCAATTTGGGAT+AGG 0.448215 3:+102022980 None:intergenic
CAGGTTGGCAATTTGGGATA+GGG 0.452166 3:+102022981 None:intergenic
GTGCCTACAAGTGAAATGTT+TGG 0.453016 3:+102022739 None:intergenic
TGGCTTGTGTTTCCAAATAT+GGG 0.454466 3:-102021842 MsG0380017901.01.T01:CDS
TAATTGATCTTATGAACAAA+TGG 0.458554 3:-102022810 MsG0380017901.01.T01:CDS
TCAGCAGCTTTGAGAAGCTT+GGG 0.460025 3:+102022418 None:intergenic
TTAACCACCTTTGACTCTGT+TGG 0.464020 3:-102022565 MsG0380017901.01.T01:CDS
CTCTTTGAGAACCGTATCAA+TGG 0.466778 3:+102021895 None:intergenic
AAAATTCTTGATATTGGTGG+TGG 0.474122 3:-102022259 MsG0380017901.01.T01:CDS
TTGCATGTTCAAGTCTTGTC+GGG 0.476921 3:-102021754 MsG0380017901.01.T01:CDS
TACCTTCCTCCGTCTTAATA+CGG 0.482251 3:+102022494 None:intergenic
CGGCTCCTCCACTGCCTATG+TGG 0.490949 3:+102022362 None:intergenic
TTTGAAACAGCTACACGGCT+TGG 0.493170 3:-102022295 MsG0380017901.01.T01:CDS
AGAGAGTATTGGATCAATGA+TGG 0.510313 3:-102022061 MsG0380017901.01.T01:CDS
TCCTAAAACTTACCCTTCAA+CGG 0.517311 3:-102021939 MsG0380017901.01.T01:CDS
CACTTGTGATGCCATTGATA+CGG 0.517983 3:-102021906 MsG0380017901.01.T01:CDS
ATGAAAATTCTTGATATTGG+TGG 0.524512 3:-102022262 MsG0380017901.01.T01:CDS
GGGATGAGTTGAGAGAGTAT+TGG 0.525387 3:-102022072 MsG0380017901.01.T01:CDS
CTCAAAGCTGCTGATATGGC+GGG 0.525471 3:-102022409 MsG0380017901.01.T01:CDS
TGAAACGCCAAGGGATAAAA+CGG 0.525559 3:+102022663 None:intergenic
ATTAAGACGGAGGAAGGTAG+TGG 0.527699 3:-102022490 MsG0380017901.01.T01:CDS
TTTGGTGCTTCAGGAGTGAA+AGG 0.530590 3:-102022949 MsG0380017901.01.T01:CDS
TTCTGTCGGGTGAAACGCCA+AGG 0.534531 3:+102022653 None:intergenic
TCACCTCAAGTTCAGGTAGC+AGG 0.539377 3:+102021870 None:intergenic
TTCTCACATGCACCCCACTT+AGG 0.546355 3:-102021997 MsG0380017901.01.T01:CDS
TAACTCTGATTTACACGGGT+TGG 0.547050 3:+102022621 None:intergenic
GTAGGCACATTAGCTTCACT+TGG 0.548025 3:-102022724 MsG0380017901.01.T01:CDS
CTCCGTATTAAGACGGAGGA+AGG 0.550571 3:-102022496 MsG0380017901.01.T01:CDS
CAATTACAACCCTTAAATCA+AGG 0.551290 3:+102022827 None:intergenic
ATGTGTAACTCTGATTTACA+CGG 0.553353 3:+102022616 None:intergenic
ATTAAATATGCTGCAAGTGT+CGG 0.554694 3:-102022595 MsG0380017901.01.T01:CDS
GTTTCCGAAAAGTAACGGCC+AGG 0.558733 3:+102022136 None:intergenic
AGTTACAACTTTGTCATCAG+AGG 0.563388 3:-102022920 MsG0380017901.01.T01:CDS
AACCACCTTTGACTCTGTTG+GGG 0.565334 3:-102022563 MsG0380017901.01.T01:CDS
CTGAACTTGAGGTGAACGAT+TGG 0.567508 3:-102021862 MsG0380017901.01.T01:CDS
TTGGCATAGATGATTCTGTC+GGG 0.569299 3:+102022640 None:intergenic
AATCTCCCCAACAGAGTCAA+AGG 0.577954 3:+102022558 None:intergenic
GATTCTTCGGCTACTAGTGT+AGG 0.578341 3:+102023003 None:intergenic
CCTCCGTCTTAATACGGAGG+AGG 0.581352 3:+102022500 None:intergenic
CGTATCAATGGCATCACAAG+TGG 0.581822 3:+102021907 None:intergenic
TGTGTAACTCTGATTTACAC+GGG 0.588484 3:+102022617 None:intergenic
AATTATTGGAAAACGTGTGA+GGG 0.589559 3:-102022092 MsG0380017901.01.T01:CDS
TCTCAAAGCTGCTGATATGG+CGG 0.589749 3:-102022410 MsG0380017901.01.T01:CDS
GTACCTGCTACCTGAACTTG+AGG 0.601377 3:-102021873 MsG0380017901.01.T01:CDS
AAATTATTGGAAAACGTGTG+AGG 0.602326 3:-102022093 MsG0380017901.01.T01:CDS
CGACAAGACTTGAACATGCA+AGG 0.608825 3:+102021756 None:intergenic
AACTCATTTCGGAAATGACA+AGG 0.614579 3:-102022179 MsG0380017901.01.T01:CDS
GTATCGTTCCACATAGGCAG+TGG 0.616728 3:-102022370 MsG0380017901.01.T01:CDS
ATGTCGTTTCCGAAAAGTAA+CGG 0.625854 3:+102022131 None:intergenic
TCGTTCCACATAGGCAGTGG+AGG 0.632211 3:-102022367 MsG0380017901.01.T01:CDS
GCTCCTCCTCCGTATTAAGA+CGG 0.645011 3:-102022503 MsG0380017901.01.T01:CDS
GTTGGCATAGATGATTCTGT+CGG 0.646092 3:+102022639 None:intergenic
AAGGTAAATGTCCTTAGCTG+TGG 0.650676 3:+102021775 None:intergenic
GCCGATGCAAAAGCTTACCA+CGG 0.668156 3:-102022343 MsG0380017901.01.T01:CDS
TCTGTCGGGTGAAACGCCAA+GGG 0.670155 3:+102022654 None:intergenic
ACTGGCGTATCGTTCCACAT+AGG 0.686836 3:-102022376 MsG0380017901.01.T01:CDS
CCTCCTCCGTATTAAGACGG+AGG 0.688874 3:-102022500 MsG0380017901.01.T01:CDS
CTCCCCAACAGAGTCAAAGG+TGG 0.692047 3:+102022561 None:intergenic
CTTCCTCCGTCTTAATACGG+AGG 0.698108 3:+102022497 None:intergenic
GTATCAATGGCATCACAAGT+GGG 0.698523 3:+102021908 None:intergenic
AAACGGATTCAATTTCGGTG+CGG 0.707037 3:+102022680 None:intergenic
TAGCTGATAATATGGCTCCG+TGG 0.725730 3:+102022326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAATTCTTGATAT+TGG - Chr3:102022486-102022505 MsG0380017901.01.T01:CDS 15.0%
!! AGATTGAAAAGATAAAAAAA+TGG - Chr3:102022211-102022230 MsG0380017901.01.T01:CDS 15.0%
!!! ATATCAAGAATTTTCATTTT+TGG + Chr3:102022486-102022505 None:intergenic 15.0%
!! ACATTAGCAACAAAAATTAT+TGG - Chr3:102022645-102022664 MsG0380017901.01.T01:CDS 20.0%
!! TAATTGATCTTATGAACAAA+TGG - Chr3:102021941-102021960 MsG0380017901.01.T01:CDS 20.0%
! AACTTCTTTAGCTGATAATA+TGG + Chr3:102022436-102022455 None:intergenic 25.0%
! ATGAAAATTCTTGATATTGG+TGG - Chr3:102022489-102022508 MsG0380017901.01.T01:CDS 25.0%
! GATGCAATAAAAACTCATTT+CGG - Chr3:102022561-102022580 MsG0380017901.01.T01:CDS 25.0%
AAAATTCTTGATATTGGTGG+TGG - Chr3:102022492-102022511 MsG0380017901.01.T01:CDS 30.0%
AAATTATTGGAAAACGTGTG+AGG - Chr3:102022658-102022677 MsG0380017901.01.T01:CDS 30.0%
AATCCAAACATTTCACTTGT+AGG - Chr3:102022009-102022028 MsG0380017901.01.T01:CDS 30.0%
AATTATTGGAAAACGTGTGA+GGG - Chr3:102022659-102022678 MsG0380017901.01.T01:CDS 30.0%
ATGTGTAACTCTGATTTACA+CGG + Chr3:102022138-102022157 None:intergenic 30.0%
ATTAAATATGCTGCAAGTGT+CGG - Chr3:102022156-102022175 MsG0380017901.01.T01:CDS 30.0%
ATTTAGCGTCCTTGATTTAA+GGG - Chr3:102021915-102021934 MsG0380017901.01.T01:CDS 30.0%
CAATTACAACCCTTAAATCA+AGG + Chr3:102021927-102021946 None:intergenic 30.0%
TTACACTTAACAGCGTAAAA+AGG + Chr3:102021991-102022010 None:intergenic 30.0%
! GGATAAAACGGATTCAATTT+CGG + Chr3:102022079-102022098 None:intergenic 30.0%
! TGGATCAATGATGGAATTTA+CGG - Chr3:102022699-102022718 MsG0380017901.01.T01:CDS 30.0%
!!! AAGTTTTTGAAACAGCTACA+CGG - Chr3:102022451-102022470 MsG0380017901.01.T01:CDS 30.0%
AACAGCGTAAAAAGGCTTAA+CGG + Chr3:102021983-102022002 None:intergenic 35.0%
AACTCATTTCGGAAATGACA+AGG - Chr3:102022572-102022591 MsG0380017901.01.T01:CDS 35.0%
AGTTACAACTTTGTCATCAG+AGG - Chr3:102021831-102021850 MsG0380017901.01.T01:CDS 35.0%
CAATGCAGCTTCATCAAATT+TGG + Chr3:102022532-102022551 None:intergenic 35.0%
CATTTAGCGTCCTTGATTTA+AGG - Chr3:102021914-102021933 MsG0380017901.01.T01:CDS 35.0%
CTTAAATCAAGGACGCTAAA+TGG + Chr3:102021916-102021935 None:intergenic 35.0%
GCATCTTTGAGTGTCAAATA+TGG - Chr3:102022291-102022310 MsG0380017901.01.T01:CDS 35.0%
GTTGTATATGCACCCATATT+TGG + Chr3:102022924-102022943 None:intergenic 35.0%
TCCTAAAACTTACCCTTCAA+CGG - Chr3:102022812-102022831 MsG0380017901.01.T01:CDS 35.0%
TCTTTGCATGTAACATTCTC+AGG + Chr3:102022792-102022811 None:intergenic 35.0%
TGTGTAACTCTGATTTACAC+GGG + Chr3:102022137-102022156 None:intergenic 35.0%
! AATTTGGGATAGGGATTCTT+CGG + Chr3:102021764-102021783 None:intergenic 35.0%
! ATGTCGTTTCCGAAAAGTAA+CGG + Chr3:102022623-102022642 None:intergenic 35.0%
! ATTGAATCCGTTTTATCCCT+TGG - Chr3:102022081-102022100 MsG0380017901.01.T01:CDS 35.0%
! CTTAACGGTTGGAAGTTTTA+TGG + Chr3:102021968-102021987 None:intergenic 35.0%
! TGGCTTGTGTTTCCAAATAT+GGG - Chr3:102022909-102022928 MsG0380017901.01.T01:CDS 35.0%
! TTTTGAACCAAACCTAAGTG+GGG + Chr3:102022769-102022788 None:intergenic 35.0%
!! AGAGAGTATTGGATCAATGA+TGG - Chr3:102022690-102022709 MsG0380017901.01.T01:CDS 35.0%
!! CTTCTGGAACCAATTTCAAT+GGG - Chr3:102022946-102022965 MsG0380017901.01.T01:CDS 35.0%
!! GACAAGGATCTTGTTGTTAT+TGG - Chr3:102022588-102022607 MsG0380017901.01.T01:CDS 35.0%
!! GTTTTGAACCAAACCTAAGT+GGG + Chr3:102022770-102022789 None:intergenic 35.0%
!! TCTTCTGGAACCAATTTCAA+TGG - Chr3:102022945-102022964 MsG0380017901.01.T01:CDS 35.0%
!! TTGGCTTGTGTTTCCAAATA+TGG - Chr3:102022908-102022927 MsG0380017901.01.T01:CDS 35.0%
AAGGTAAATGTCCTTAGCTG+TGG + Chr3:102022979-102022998 None:intergenic 40.0%
CACTTGTGATGCCATTGATA+CGG - Chr3:102022845-102022864 MsG0380017901.01.T01:CDS 40.0%
GGAGCAAAACCCATTGAAAT+TGG + Chr3:102022958-102022977 None:intergenic 40.0%
GGTGCATATACAACTTCTTC+TGG - Chr3:102022930-102022949 MsG0380017901.01.T01:CDS 40.0%
GTATCAATGGCATCACAAGT+GGG + Chr3:102022846-102022865 None:intergenic 40.0%
GTGCCTACAAGTGAAATGTT+TGG + Chr3:102022015-102022034 None:intergenic 40.0%
GTTGGCATAGATGATTCTGT+CGG + Chr3:102022115-102022134 None:intergenic 40.0%
TAACCACCTTTGACTCTGTT+GGG - Chr3:102022187-102022206 MsG0380017901.01.T01:CDS 40.0%
TAACTCTGATTTACACGGGT+TGG + Chr3:102022133-102022152 None:intergenic 40.0%
TACCTTCCTCCGTCTTAATA+CGG + Chr3:102022260-102022279 None:intergenic 40.0%
TGAAACGCCAAGGGATAAAA+CGG + Chr3:102022091-102022110 None:intergenic 40.0%
TTAACCACCTTTGACTCTGT+TGG - Chr3:102022186-102022205 MsG0380017901.01.T01:CDS 40.0%
TTGGCATAGATGATTCTGTC+GGG + Chr3:102022114-102022133 None:intergenic 40.0%
! AAACGGATTCAATTTCGGTG+CGG + Chr3:102022074-102022093 None:intergenic 40.0%
! ACCGTTGAAGGGTAAGTTTT+AGG + Chr3:102022816-102022835 None:intergenic 40.0%
! ACTCCTGAAGCACCAAAAAT+GGG + Chr3:102021799-102021818 None:intergenic 40.0%
! ACTTACCCTTCAACGGTTTT+TGG - Chr3:102022819-102022838 MsG0380017901.01.T01:CDS 40.0%
! CTCTTTGAGAACCGTATCAA+TGG + Chr3:102022859-102022878 None:intergenic 40.0%
! CTTGCATGTTCAAGTCTTGT+CGG - Chr3:102022996-102023015 MsG0380017901.01.T01:CDS 40.0%
! TTGCATGTTCAAGTCTTGTC+GGG - Chr3:102022997-102023016 MsG0380017901.01.T01:CDS 40.0%
!! AATGGTGAGTCATTTTCAGC+TGG + Chr3:102021898-102021917 None:intergenic 40.0%
!! CTTGTTGTTATTGGTGAACC+TGG - Chr3:102022597-102022616 MsG0380017901.01.T01:CDS 40.0%
!! TGAGTCATTTTCAGCTGGTT+TGG + Chr3:102021893-102021912 None:intergenic 40.0%
!!! GGTTTTGAACCAAACCTAAG+TGG + Chr3:102022771-102022790 None:intergenic 40.0%
AACCACCTTTGACTCTGTTG+GGG - Chr3:102022188-102022207 MsG0380017901.01.T01:CDS 45.0%
AATCTCCCCAACAGAGTCAA+AGG + Chr3:102022196-102022215 None:intergenic 45.0%
ATTAAGACGGAGGAAGGTAG+TGG - Chr3:102022261-102022280 MsG0380017901.01.T01:CDS 45.0%
CAATCGTTCACCTCAAGTTC+AGG + Chr3:102022891-102022910 None:intergenic 45.0%
CGACAAGACTTGAACATGCA+AGG + Chr3:102022998-102023017 None:intergenic 45.0%
CGTATCAATGGCATCACAAG+TGG + Chr3:102022847-102022866 None:intergenic 45.0%
CTGAACTTGAGGTGAACGAT+TGG - Chr3:102022889-102022908 MsG0380017901.01.T01:CDS 45.0%
GATTCTTCGGCTACTAGTGT+AGG + Chr3:102021751-102021770 None:intergenic 45.0%
GCGTAAAAAGGCTTAACGGT+TGG + Chr3:102021979-102021998 None:intergenic 45.0%
GCTTCTCAAAGCTGCTGATA+TGG - Chr3:102022338-102022357 MsG0380017901.01.T01:CDS 45.0%
TAGCTGATAATATGGCTCCG+TGG + Chr3:102022428-102022447 None:intergenic 45.0%
TCTCAAAGCTGCTGATATGG+CGG - Chr3:102022341-102022360 MsG0380017901.01.T01:CDS 45.0%
TGGGTCCAAAAACCGTTGAA+GGG + Chr3:102022827-102022846 None:intergenic 45.0%
! AAGCACCAAAAATGGGCTTC+AGG + Chr3:102021792-102021811 None:intergenic 45.0%
! ACCAAAAATGGGCTTCAGGT+TGG + Chr3:102021788-102021807 None:intergenic 45.0%
! ATGGCGGGACTTAAAGTAAC+TGG - Chr3:102022357-102022376 MsG0380017901.01.T01:CDS 45.0%
! CACTCCTGAAGCACCAAAAA+TGG + Chr3:102021800-102021819 None:intergenic 45.0%
! CAGGTTGGCAATTTGGGATA+GGG + Chr3:102021773-102021792 None:intergenic 45.0%
! GGGATGAGTTGAGAGAGTAT+TGG - Chr3:102022679-102022698 MsG0380017901.01.T01:CDS 45.0%
! GTAGGCACATTAGCTTCACT+TGG - Chr3:102022027-102022046 MsG0380017901.01.T01:CDS 45.0%
! TCCGTGGTAAGCTTTTGCAT+CGG + Chr3:102022412-102022431 None:intergenic 45.0%
! TTTGAAACAGCTACACGGCT+TGG - Chr3:102022456-102022475 MsG0380017901.01.T01:CDS 45.0%
!! ATCAGCAGCTTTGAGAAGCT+TGG + Chr3:102022337-102022356 None:intergenic 45.0%
!! ATTGGTGGTGGATTCACTTC+TGG - Chr3:102022504-102022523 MsG0380017901.01.T01:CDS 45.0%
!! TCAGCAGCTTTGAGAAGCTT+GGG + Chr3:102022336-102022355 None:intergenic 45.0%
!! TCAGGTTGGCAATTTGGGAT+AGG + Chr3:102021774-102021793 None:intergenic 45.0%
!! TTTGGTGCTTCAGGAGTGAA+AGG - Chr3:102021802-102021821 MsG0380017901.01.T01:CDS 45.0%
!!! AAGCCCATTTTTGGTGCTTC+AGG - Chr3:102021793-102021812 MsG0380017901.01.T01:CDS 45.0%
!!! TGAACCTGGCCGTTACTTTT+CGG - Chr3:102022611-102022630 MsG0380017901.01.T01:CDS 45.0%
ACATGCACCCCACTTAGGTT+TGG - Chr3:102022759-102022778 MsG0380017901.01.T01:CDS 50.0%
ACTGGCGTATCGTTCCACAT+AGG - Chr3:102022375-102022394 MsG0380017901.01.T01:CDS 50.0%
CTCAAAGCTGCTGATATGGC+GGG - Chr3:102022342-102022361 MsG0380017901.01.T01:CDS 50.0%
CTCCGTATTAAGACGGAGGA+AGG - Chr3:102022255-102022274 MsG0380017901.01.T01:CDS 50.0%
CTTCCTCCGTCTTAATACGG+AGG + Chr3:102022257-102022276 None:intergenic 50.0%
GCCGATGCAAAAGCTTACCA+CGG - Chr3:102022408-102022427 MsG0380017901.01.T01:CDS 50.0%
GCTCCTCCTCCGTATTAAGA+CGG - Chr3:102022248-102022267 MsG0380017901.01.T01:CDS 50.0%
GTACCTGCTACCTGAACTTG+AGG - Chr3:102022878-102022897 MsG0380017901.01.T01:CDS 50.0%
GTATCGTTCCACATAGGCAG+TGG - Chr3:102022381-102022400 MsG0380017901.01.T01:CDS 50.0%
GTGGGTCCAAAAACCGTTGA+AGG + Chr3:102022828-102022847 None:intergenic 50.0%
GTTTCCGAAAAGTAACGGCC+AGG + Chr3:102022618-102022637 None:intergenic 50.0%
TCACCTCAAGTTCAGGTAGC+AGG + Chr3:102022884-102022903 None:intergenic 50.0%
TTCTCACATGCACCCCACTT+AGG - Chr3:102022754-102022773 MsG0380017901.01.T01:CDS 50.0%
! GCCAACCTGAAGCCCATTTT+TGG - Chr3:102021784-102021803 MsG0380017901.01.T01:CDS 50.0%
! TGGGTTTTGCTCCACAGCTA+AGG - Chr3:102022965-102022984 MsG0380017901.01.T01:CDS 50.0%
!! GGGCTTCAGGTTGGCAATTT+GGG + Chr3:102021779-102021798 None:intergenic 50.0%
!! TGGGCTTCAGGTTGGCAATT+TGG + Chr3:102021780-102021799 None:intergenic 50.0%
CCTCCGTCTTAATACGGAGG+AGG + Chr3:102022254-102022273 None:intergenic 55.0%
CCTCCTCCGTATTAAGACGG+AGG - Chr3:102022251-102022270 MsG0380017901.01.T01:CDS 55.0%
CTCCCCAACAGAGTCAAAGG+TGG + Chr3:102022193-102022212 None:intergenic 55.0%
TCGTTCCACATAGGCAGTGG+AGG - Chr3:102022384-102022403 MsG0380017901.01.T01:CDS 55.0%
TCTGTCGGGTGAAACGCCAA+GGG + Chr3:102022100-102022119 None:intergenic 55.0%
TTCTGTCGGGTGAAACGCCA+AGG + Chr3:102022101-102022120 None:intergenic 55.0%
! CGGAGGAGGAGCTCACATTT+TGG + Chr3:102022240-102022259 None:intergenic 55.0%
! GGATTCAATTTCGGTGCGGC+TGG + Chr3:102022070-102022089 None:intergenic 55.0%
CGGCTCCTCCACTGCCTATG+TGG + Chr3:102022392-102022411 None:intergenic 65.0%
GCGGCTGGCGCAGTCGAAAT+TGG + Chr3:102022055-102022074 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 102021745 102023028 102021745 ID=MsG0380017901.01;Name=MsG0380017901.01
Chr3 mRNA 102021745 102023028 102021745 ID=MsG0380017901.01.T01;Parent=MsG0380017901.01;Name=MsG0380017901.01.T01;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|427
Chr3 exon 102021745 102023028 102021745 ID=MsG0380017901.01.T01:exon:18228;Parent=MsG0380017901.01.T01
Chr3 CDS 102021745 102023028 102021745 ID=MsG0380017901.01.T01:cds;Parent=MsG0380017901.01.T01
Chr3 mRNA 102021745 102022821 102021745 ID=MsG0380017901.01.T02;Parent=MsG0380017901.01;Name=MsG0380017901.01.T02;_AED=0.08;_eAED=0.08;_QI=0|-1|0|1|-1|0|1|0|358
Chr3 exon 102021745 102022821 102021745 ID=MsG0380017901.01.T02:exon:18229;Parent=MsG0380017901.01.T02
Chr3 CDS 102021745 102022821 102021745 ID=MsG0380017901.01.T02:cds;Parent=MsG0380017901.01.T02
Chr3 mRNA 102021870 102021977 102021870 ID=MsG0380017901.01.T03;Parent=MsG0380017901.01;Name=MsG0380017901.01.T03;_AED=0.46;_eAED=1.00;_QI=0|-1|0|1|-1|0|1|0|35
Chr3 exon 102021870 102021977 102021870 ID=MsG0380017901.01.T03:exon:18230;Parent=MsG0380017901.01.T03
Chr3 CDS 102021870 102021977 102021870 ID=MsG0380017901.01.T03:cds;Parent=MsG0380017901.01.T03
Gene Sequence

>MsG0380017901.01.T01

ATGCCTACACTAGTAGCCGAAGAATCCCTATCCCAAATTGCCAACCTGAAGCCCATTTTTGGTGCTTCAGGAGTGAAAGGCAAGAAAGTTACAACTTTGTCATCAGAGGTTACTATTTCTGATTTCATTCAATCTGTTATTAAAACCAAACCAGCTGAAAATGACTCACCATTTAGCGTCCTTGATTTAAGGGTTGTAATTGATCTTATGAACAAATGGACCATAAAACTTCCAACCGTTAAGCCTTTTTACGCTGTTAAGTGTAATCCAAACATTTCACTTGTAGGCACATTAGCTTCACTTGGCACCAATTTCGACTGCGCCAGCCGCACCGAAATTGAATCCGTTTTATCCCTTGGCGTTTCACCCGACAGAATCATCTATGCCAACCCGTGTAAATCAGAGTTACACATTAAATATGCTGCAAGTGTCGGCGTAAACTTAACCACCTTTGACTCTGTTGGGGAGATTGAAAAGATAAAAAAATGGCATCCAAAATGTGAGCTCCTCCTCCGTATTAAGACGGAGGAAGGTAGTGGAGCGCGTGCATCTTTGAGTGTCAAATATGGCGCGCTTCACAACGAAGTTCCCAAGCTTCTCAAAGCTGCTGATATGGCGGGACTTAAAGTAACTGGCGTATCGTTCCACATAGGCAGTGGAGGAGCCGATGCAAAAGCTTACCACGGAGCCATATTATCAGCTAAAGAAGTTTTTGAAACAGCTACACGGCTTGGAATGCCAAAAATGAAAATTCTTGATATTGGTGGTGGATTCACTTCTGGCTCCAAATTTGATGAAGCTGCATTGAATGTGAACGATGCAATAAAAACTCATTTCGGAAATGACAAGGATCTTGTTGTTATTGGTGAACCTGGCCGTTACTTTTCGGAAACGACATTTACATTAGCAACAAAAATTATTGGAAAACGTGTGAGGGATGAGTTGAGAGAGTATTGGATCAATGATGGAATTTACGGAACTCTTAATAATATTTTATTTGATTCAGCTATTCTCACATGCACCCCACTTAGGTTTGGTTCAAAACCTGAGAATGTTACATGCAAAGATCCTAAAACTTACCCTTCAACGGTTTTTGGACCCACTTGTGATGCCATTGATACGGTTCTCAAAGAGTACCTGCTACCTGAACTTGAGGTGAACGATTGGCTTGTGTTTCCAAATATGGGTGCATATACAACTTCTTCTGGAACCAATTTCAATGGGTTTTGCTCCACAGCTAAGGACATTTACCTTGCATGTTCAAGTCTTGTCGGGCAAGAATAA

>MsG0380017901.01.T03

ATGTTACATGCAAAGATCCTAAAACTTACCCTTCAACGGTTTTTGGACCCACTTGTGATGCCATTGATACGGTTCTCAAAGAGTACCTGCTACCTGAACTTGAGGTGA

>MsG0380017901.01.T02

ATGAACAAATGGACCATAAAACTTCCAACCGTTAAGCCTTTTTACGCTGTTAAGTGTAATCCAAACATTTCACTTGTAGGCACATTAGCTTCACTTGGCACCAATTTCGACTGCGCCAGCCGCACCGAAATTGAATCCGTTTTATCCCTTGGCGTTTCACCCGACAGAATCATCTATGCCAACCCGTGTAAATCAGAGTTACACATTAAATATGCTGCAAGTGTCGGCGTAAACTTAACCACCTTTGACTCTGTTGGGGAGATTGAAAAGATAAAAAAATGGCATCCAAAATGTGAGCTCCTCCTCCGTATTAAGACGGAGGAAGGTAGTGGAGCGCGTGCATCTTTGAGTGTCAAATATGGCGCGCTTCACAACGAAGTTCCCAAGCTTCTCAAAGCTGCTGATATGGCGGGACTTAAAGTAACTGGCGTATCGTTCCACATAGGCAGTGGAGGAGCCGATGCAAAAGCTTACCACGGAGCCATATTATCAGCTAAAGAAGTTTTTGAAACAGCTACACGGCTTGGAATGCCAAAAATGAAAATTCTTGATATTGGTGGTGGATTCACTTCTGGCTCCAAATTTGATGAAGCTGCATTGAATGTGAACGATGCAATAAAAACTCATTTCGGAAATGACAAGGATCTTGTTGTTATTGGTGAACCTGGCCGTTACTTTTCGGAAACGACATTTACATTAGCAACAAAAATTATTGGAAAACGTGTGAGGGATGAGTTGAGAGAGTATTGGATCAATGATGGAATTTACGGAACTCTTAATAATATTTTATTTGATTCAGCTATTCTCACATGCACCCCACTTAGGTTTGGTTCAAAACCTGAGAATGTTACATGCAAAGATCCTAAAACTTACCCTTCAACGGTTTTTGGACCCACTTGTGATGCCATTGATACGGTTCTCAAAGAGTACCTGCTACCTGAACTTGAGGTGAACGATTGGCTTGTGTTTCCAAATATGGGTGCATATACAACTTCTTCTGGAACCAATTTCAATGGGTTTTGCTCCACAGCTAAGGACATTTACCTTGCATGTTCAAGTCTTGTCGGGCAAGAATAA

Protein sequence

>MsG0380017901.01.T01

MPTLVAEESLSQIANLKPIFGASGVKGKKVTTLSSEVTISDFIQSVIKTKPAENDSPFSVLDLRVVIDLMNKWTIKLPTVKPFYAVKCNPNISLVGTLASLGTNFDCASRTEIESVLSLGVSPDRIIYANPCKSELHIKYAASVGVNLTTFDSVGEIEKIKKWHPKCELLLRIKTEEGSGARASLSVKYGALHNEVPKLLKAADMAGLKVTGVSFHIGSGGADAKAYHGAILSAKEVFETATRLGMPKMKILDIGGGFTSGSKFDEAALNVNDAIKTHFGNDKDLVVIGEPGRYFSETTFTLATKIIGKRVRDELREYWINDGIYGTLNNILFDSAILTCTPLRFGSKPENVTCKDPKTYPSTVFGPTCDAIDTVLKEYLLPELEVNDWLVFPNMGAYTTSSGTNFNGFCSTAKDIYLACSSLVGQE*

>MsG0380017901.01.T03

MLHAKILKLTLQRFLDPLVMPLIRFSKSTCYLNLR*

>MsG0380017901.01.T02

MNKWTIKLPTVKPFYAVKCNPNISLVGTLASLGTNFDCASRTEIESVLSLGVSPDRIIYANPCKSELHIKYAASVGVNLTTFDSVGEIEKIKKWHPKCELLLRIKTEEGSGARASLSVKYGALHNEVPKLLKAADMAGLKVTGVSFHIGSGGADAKAYHGAILSAKEVFETATRLGMPKMKILDIGGGFTSGSKFDEAALNVNDAIKTHFGNDKDLVVIGEPGRYFSETTFTLATKIIGKRVRDELREYWINDGIYGTLNNILFDSAILTCTPLRFGSKPENVTCKDPKTYPSTVFGPTCDAIDTVLKEYLLPELEVNDWLVFPNMGAYTTSSGTNFNGFCSTAKDIYLACSSLVGQE*