AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039883.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039883.01.T02 MTR_7g080980 98.895 181 1 1 1 181 1 180 7.11e-126 356
MsG0780039883.01.T02 MTR_4g098450 64.211 190 44 4 1 169 1 187 4.24e-62 195
MsG0780039883.01.T02 MTR_5g091630 57.692 156 53 3 25 168 3 157 1.37e-58 184
MsG0780039883.01.T02 MTR_1g044155 68.852 122 38 0 48 169 116 237 3.95e-55 179
MsG0780039883.01.T02 MTR_1g073860 66.116 121 41 0 48 168 84 204 3.79e-54 175
MsG0780039883.01.T02 MTR_8g036060 66.207 145 46 1 27 168 52 196 1.82e-53 173
MsG0780039883.01.T02 MTR_5g011520 70.690 116 34 0 54 169 96 211 3.09e-50 165
MsG0780039883.01.T02 MTR_1g079810 66.667 111 37 0 58 168 74 184 1.80e-49 163
MsG0780039883.01.T02 MTR_3g068035 70.588 102 30 0 68 169 89 190 3.57e-47 157
MsG0780039883.01.T02 MTR_3g100470 47.590 166 75 4 25 180 37 200 3.04e-42 144
MsG0780039883.01.T02 MTR_5g080580 59.406 101 41 0 68 168 99 199 2.83e-36 129
MsG0780039883.01.T02 MTR_5g066020 47.500 120 58 3 67 181 60 179 9.24e-29 108
MsG0780039883.01.T02 MTR_5g089600 40.000 135 70 2 58 181 77 211 2.18e-27 103
MsG0780039883.01.T02 MTR_5g089700 32.667 150 92 1 58 198 75 224 3.18e-21 87.8
MsG0780039883.01.T02 MTR_5g010330 39.394 132 74 3 58 183 104 235 5.56e-20 85.9
MsG0780039883.01.T02 MTR_5g089090 37.313 134 68 2 58 180 28 156 9.34e-20 83.6
MsG0780039883.01.T02 MTR_1g032910 37.037 135 73 3 58 180 101 235 2.56e-19 84.0
MsG0780039883.01.T02 MTR_4g057487 33.083 133 80 2 58 181 17 149 4.53e-19 82.4
MsG0780039883.01.T02 MTR_7g074935 52.239 67 32 0 88 154 130 196 8.25e-18 80.1
MsG0780039883.01.T02 MTR_4g057525 32.331 133 81 2 58 181 36 168 3.37e-17 77.4
MsG0780039883.01.T02 MTR_1g053685 34.091 132 78 2 58 180 85 216 4.10e-17 77.8
MsG0780039883.01.T02 MTR_8g036160 49.254 67 34 0 88 154 145 211 6.99e-17 77.8
MsG0780039883.01.T02 MTR_4g069110 36.842 95 60 0 58 152 34 128 1.30e-16 74.3
MsG0780039883.01.T02 MTR_1g076710 50.000 70 34 1 85 154 134 202 1.93e-15 73.6
MsG0780039883.01.T02 MTR_8g031100 38.614 101 59 1 56 153 123 223 2.17e-15 73.6
MsG0780039883.01.T02 MTR_6g061670 43.434 99 49 2 85 178 125 221 2.86e-15 73.2
MsG0780039883.01.T02 MTR_6g061670 43.434 99 49 2 85 178 130 226 2.91e-15 73.2
MsG0780039883.01.T02 MTR_1g061530 44.330 97 50 2 88 180 144 240 3.73e-15 73.2
MsG0780039883.01.T02 MTR_8g098390 39.091 110 64 2 77 183 158 267 4.55e-15 72.8
MsG0780039883.01.T02 MTR_4g101990 47.761 67 35 0 88 154 147 213 5.32e-15 72.4
MsG0780039883.01.T02 MTR_4g098460 35.294 136 79 4 49 180 48 178 6.05e-14 68.9
MsG0780039883.01.T02 MTR_1g079780 37.113 97 60 1 85 180 109 205 1.67e-13 68.2
MsG0780039883.01.T02 MTR_7g116320 37.681 69 43 0 85 153 143 211 2.88e-13 67.8
MsG0780039883.01.T02 MTR_7g116320 37.681 69 43 0 85 153 143 211 4.47e-13 66.6
MsG0780039883.01.T02 MTR_4g055803 34.711 121 70 3 84 195 124 244 1.81e-12 65.5
MsG0780039883.01.T02 MTR_4g055813 35.897 117 70 3 84 195 18 134 3.26e-12 64.3
MsG0780039883.01.T02 MTR_4g098460 33.571 140 81 4 49 180 48 183 3.97e-12 63.9
MsG0780039883.01.T02 MTR_4g055833 39.806 103 56 2 84 180 121 223 1.42e-11 62.8
MsG0780039883.01.T02 MTR_7g077120 33.588 131 77 3 58 180 127 255 2.87e-11 62.0
MsG0780039883.01.T02 MTR_5g011620 35.052 97 61 1 84 180 114 208 4.20e-11 61.6
MsG0780039883.01.T02 MTR_1g071850 39.423 104 57 3 66 166 38 138 4.67e-11 59.7
MsG0780039883.01.T01 MTR_7g080980 92.265 181 2 2 1 170 1 180 2.10e-113 324
MsG0780039883.01.T01 MTR_4g098450 62.434 189 38 4 1 158 1 187 1.42e-58 185
MsG0780039883.01.T01 MTR_5g091630 55.128 156 46 1 26 157 2 157 1.84e-57 181
MsG0780039883.01.T01 MTR_1g044155 73.874 111 29 0 47 157 126 236 3.32e-54 176
MsG0780039883.01.T01 MTR_1g073860 69.369 111 34 0 47 157 94 204 3.11e-53 172
MsG0780039883.01.T01 MTR_8g036060 63.448 145 39 1 27 157 52 196 4.79e-53 172
MsG0780039883.01.T01 MTR_1g079810 66.667 111 37 0 47 157 74 184 8.90e-50 163
MsG0780039883.01.T01 MTR_5g011520 72.321 112 31 0 47 158 100 211 1.13e-49 163
MsG0780039883.01.T01 MTR_3g068035 70.588 102 30 0 57 158 89 190 2.35e-47 157
MsG0780039883.01.T01 MTR_3g100470 47.305 167 63 5 25 169 37 200 1.17e-40 139
MsG0780039883.01.T01 MTR_5g080580 59.406 101 41 0 57 157 99 199 1.59e-36 129
MsG0780039883.01.T01 MTR_5g066020 47.500 120 58 3 56 170 60 179 6.00e-29 108
MsG0780039883.01.T01 MTR_5g089600 40.000 135 70 2 47 170 77 211 1.75e-27 103
MsG0780039883.01.T01 MTR_5g089700 32.667 150 92 1 47 187 75 224 2.44e-21 87.8
MsG0780039883.01.T01 MTR_5g089090 36.957 138 71 2 43 169 24 156 1.64e-20 85.1
MsG0780039883.01.T01 MTR_5g010330 39.394 132 74 3 47 172 104 235 4.30e-20 85.9
MsG0780039883.01.T01 MTR_1g032910 37.037 135 73 3 47 169 101 235 1.93e-19 84.0
MsG0780039883.01.T01 MTR_4g057487 33.083 133 80 2 47 170 17 149 3.70e-19 82.0
MsG0780039883.01.T01 MTR_7g074935 52.239 67 32 0 77 143 130 196 5.61e-18 80.5
MsG0780039883.01.T01 MTR_4g057525 32.331 133 81 2 47 170 36 168 2.38e-17 77.4
MsG0780039883.01.T01 MTR_1g053685 34.091 132 78 2 47 169 85 216 2.61e-17 77.8
MsG0780039883.01.T01 MTR_8g036160 49.254 67 34 0 77 143 145 211 4.88e-17 77.8
MsG0780039883.01.T01 MTR_4g069110 36.842 95 60 0 47 141 34 128 8.92e-17 74.3
MsG0780039883.01.T01 MTR_8g031100 38.532 109 62 2 39 142 115 223 1.27e-15 73.9
MsG0780039883.01.T01 MTR_1g076710 50.000 70 34 1 74 143 134 202 1.40e-15 73.6
MsG0780039883.01.T01 MTR_6g061670 43.434 99 49 2 74 167 130 226 2.12e-15 73.2
MsG0780039883.01.T01 MTR_1g061530 44.330 97 50 2 77 169 144 240 2.21e-15 73.2
MsG0780039883.01.T01 MTR_6g061670 43.434 99 49 2 74 167 125 221 2.33e-15 72.8
MsG0780039883.01.T01 MTR_8g098390 39.091 110 64 2 66 172 158 267 3.10e-15 72.8
MsG0780039883.01.T01 MTR_4g101990 47.761 67 35 0 77 143 147 213 3.49e-15 72.4
MsG0780039883.01.T01 MTR_1g079780 37.113 97 60 1 74 169 109 205 1.14e-13 68.2
MsG0780039883.01.T01 MTR_4g098460 36.220 127 72 4 47 169 57 178 1.17e-13 67.8
MsG0780039883.01.T01 MTR_7g116320 37.681 69 43 0 74 142 143 211 2.42e-13 67.4
MsG0780039883.01.T01 MTR_7g116320 37.681 69 43 0 74 142 143 211 3.58e-13 66.6
MsG0780039883.01.T01 MTR_4g055803 34.711 121 70 3 73 184 124 244 1.50e-12 65.5
MsG0780039883.01.T01 MTR_4g055813 35.897 117 70 3 73 184 18 134 2.81e-12 63.9
MsG0780039883.01.T01 MTR_4g098460 34.351 131 74 4 47 169 57 183 6.69e-12 63.2
MsG0780039883.01.T01 MTR_4g055833 39.806 103 56 2 73 169 121 223 9.72e-12 62.8
MsG0780039883.01.T01 MTR_7g077120 33.588 131 77 3 47 169 127 255 2.34e-11 61.6
MsG0780039883.01.T01 MTR_1g071850 39.423 104 57 3 55 155 38 138 2.99e-11 60.1
MsG0780039883.01.T01 MTR_5g011620 35.052 97 61 1 73 169 114 208 3.36e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039883.01.T02 AT4G17800 67.188 192 39 2 1 168 1 192 8.38e-72 219
MsG0780039883.01.T02 AT2G35270 60.209 191 54 4 1 170 1 190 7.14e-66 204
MsG0780039883.01.T02 AT3G60870 55.114 176 71 3 6 181 13 180 1.20e-54 175
MsG0780039883.01.T02 AT2G42940 53.741 147 68 0 24 170 19 165 5.47e-54 173
MsG0780039883.01.T02 AT4G14465 65.289 121 42 0 48 168 57 177 9.90e-53 171
MsG0780039883.01.T02 AT3G04570 47.727 176 70 2 16 169 24 199 1.12e-50 166
MsG0780039883.01.T02 AT1G76500 58.642 162 53 2 30 182 49 205 2.53e-50 165
MsG0780039883.01.T02 AT4G22810 73.043 115 28 1 58 169 105 219 1.97e-47 158
MsG0780039883.01.T02 AT4G12050 72.566 113 30 1 58 169 118 230 5.55e-47 157
MsG0780039883.01.T02 AT2G45430 69.492 118 32 1 56 169 87 204 7.07e-47 156
MsG0780039883.01.T02 AT5G49700 55.303 132 52 2 56 180 54 185 4.82e-43 145
MsG0780039883.01.T02 AT1G20900 57.237 152 55 2 26 168 55 205 3.17e-41 142
MsG0780039883.01.T02 AT4G35390 66.667 96 30 1 58 151 63 158 4.90e-40 138
MsG0780039883.01.T02 AT3G55560 59.813 107 42 1 63 168 93 199 4.65e-34 123
MsG0780039883.01.T02 AT1G14490 47.887 142 64 4 46 180 13 151 8.95e-28 104
MsG0780039883.01.T02 AT1G14490 49.612 129 56 3 59 180 6 132 1.59e-27 103
MsG0780039883.01.T02 AT1G63470 41.481 135 67 4 58 183 147 278 5.69e-21 89.4
MsG0780039883.01.T02 AT4G12080 45.833 96 45 2 88 178 173 266 2.01e-17 79.3
MsG0780039883.01.T02 AT5G51590 40.187 107 57 2 84 185 177 281 2.26e-17 79.7
MsG0780039883.01.T02 AT2G33620 44.792 96 52 1 57 152 136 230 4.09e-17 78.6
MsG0780039883.01.T02 AT2G33620 44.792 96 52 1 57 152 136 230 4.09e-17 78.6
MsG0780039883.01.T02 AT2G33620 44.792 96 52 1 57 152 136 230 4.09e-17 78.6
MsG0780039883.01.T02 AT2G33620 44.792 96 52 1 57 152 136 230 4.09e-17 78.6
MsG0780039883.01.T02 AT4G25320 42.574 101 55 1 88 185 169 269 6.88e-17 78.2
MsG0780039883.01.T02 AT5G62260 35.762 151 75 6 37 180 123 258 7.16e-17 77.0
MsG0780039883.01.T02 AT5G62260 40.566 106 56 2 85 185 160 263 1.30e-16 77.4
MsG0780039883.01.T02 AT5G62260 40.566 106 56 2 85 185 160 263 1.30e-16 77.4
MsG0780039883.01.T02 AT4G17950 39.437 142 79 3 44 180 182 321 1.34e-16 77.4
MsG0780039883.01.T02 AT2G45850 37.405 131 72 3 58 180 132 260 2.26e-16 76.3
MsG0780039883.01.T02 AT2G45850 37.405 131 72 3 58 180 132 260 2.26e-16 76.3
MsG0780039883.01.T02 AT2G45850 37.405 131 72 3 58 180 132 260 3.60e-16 75.1
MsG0780039883.01.T02 AT3G04590 36.634 101 64 0 80 180 166 266 5.01e-16 75.9
MsG0780039883.01.T02 AT3G04590 39.785 93 56 0 88 180 174 266 5.72e-16 75.1
MsG0780039883.01.T02 AT5G46640 42.708 96 53 1 58 153 155 248 1.16e-15 74.7
MsG0780039883.01.T02 AT4G00200 46.970 66 35 0 88 153 126 191 1.28e-15 73.9
MsG0780039883.01.T02 AT4G00200 46.970 66 35 0 88 153 126 191 1.28e-15 73.9
MsG0780039883.01.T02 AT4G22770 44.595 74 41 0 81 154 146 219 6.04e-15 72.4
MsG0780039883.01.T02 AT4G22770 44.595 74 41 0 81 154 146 219 6.04e-15 72.4
MsG0780039883.01.T02 AT3G61310 37.838 111 60 2 46 153 128 232 6.93e-14 69.3
MsG0780039883.01.T02 AT1G63480 34.653 101 59 2 58 153 130 228 7.93e-14 69.3
MsG0780039883.01.T02 AT1G63480 34.653 101 59 2 58 153 130 228 7.93e-14 69.3
MsG0780039883.01.T02 AT1G63480 34.653 101 59 2 58 153 124 222 8.21e-14 69.3
MsG0780039883.01.T02 AT1G63480 34.653 101 59 2 58 153 124 222 8.21e-14 69.3
MsG0780039883.01.T02 AT1G63480 34.653 101 59 2 58 153 124 222 8.21e-14 69.3
MsG0780039883.01.T02 AT1G63480 34.653 101 59 2 58 153 124 222 8.21e-14 69.3
MsG0780039883.01.T02 AT1G63480 34.653 101 59 2 58 153 124 222 8.21e-14 69.3
MsG0780039883.01.T01 AT4G17800 64.583 192 33 2 1 157 1 192 1.61e-68 211
MsG0780039883.01.T01 AT2G35270 83.478 115 19 0 45 159 76 190 4.26e-65 202
MsG0780039883.01.T01 AT3G60870 54.023 174 65 3 6 170 13 180 7.34e-53 170
MsG0780039883.01.T01 AT2G42940 53.378 148 56 2 24 159 19 165 6.15e-52 167
MsG0780039883.01.T01 AT4G14465 67.544 114 37 0 44 157 64 177 6.98e-52 168
MsG0780039883.01.T01 AT1G76500 59.355 155 54 1 26 171 51 205 2.05e-50 165
MsG0780039883.01.T01 AT3G04570 47.727 176 59 3 16 158 24 199 1.92e-48 160
MsG0780039883.01.T01 AT4G22810 71.429 119 31 1 43 158 101 219 2.40e-48 160
MsG0780039883.01.T01 AT4G12050 72.566 113 30 1 47 158 118 230 3.46e-47 157
MsG0780039883.01.T01 AT2G45430 67.200 125 33 2 38 158 84 204 4.41e-47 156
MsG0780039883.01.T01 AT5G49700 55.303 132 52 2 45 169 54 185 2.91e-43 145
MsG0780039883.01.T01 AT4G35390 66.667 96 30 1 47 140 63 158 2.79e-40 139
MsG0780039883.01.T01 AT1G20900 56.291 151 47 2 26 157 55 205 4.91e-40 138
MsG0780039883.01.T01 AT3G55560 59.813 107 42 1 52 157 93 199 3.47e-34 123
MsG0780039883.01.T01 AT1G14490 49.612 129 56 3 48 169 6 132 1.05e-27 103
MsG0780039883.01.T01 AT1G14490 49.612 129 56 3 48 169 25 151 1.31e-27 103
MsG0780039883.01.T01 AT1G63470 41.481 135 67 4 47 172 147 278 3.86e-21 89.7
MsG0780039883.01.T01 AT4G12080 45.833 96 45 2 77 167 173 266 1.24e-17 79.7
MsG0780039883.01.T01 AT5G51590 40.187 107 57 2 73 174 177 281 1.39e-17 79.7
MsG0780039883.01.T01 AT2G33620 44.792 96 52 1 46 141 136 230 3.21e-17 78.6
MsG0780039883.01.T01 AT2G33620 44.792 96 52 1 46 141 136 230 3.21e-17 78.6
MsG0780039883.01.T01 AT2G33620 44.792 96 52 1 46 141 136 230 3.21e-17 78.6
MsG0780039883.01.T01 AT2G33620 44.792 96 52 1 46 141 136 230 3.21e-17 78.6
MsG0780039883.01.T01 AT4G25320 42.718 103 52 2 77 174 169 269 3.65e-17 78.6
MsG0780039883.01.T01 AT5G62260 42.574 101 51 2 74 169 160 258 5.38e-17 77.0
MsG0780039883.01.T01 AT5G62260 40.566 106 56 2 74 174 160 263 7.22e-17 77.8
MsG0780039883.01.T01 AT5G62260 40.566 106 56 2 74 174 160 263 7.22e-17 77.8
MsG0780039883.01.T01 AT2G45850 37.405 131 72 3 47 169 132 260 1.79e-16 76.3
MsG0780039883.01.T01 AT2G45850 37.405 131 72 3 47 169 132 260 1.79e-16 76.3
MsG0780039883.01.T01 AT2G45850 36.620 142 73 4 36 169 128 260 2.25e-16 75.5
MsG0780039883.01.T01 AT4G17950 41.406 128 68 3 47 169 196 321 3.10e-16 76.3
MsG0780039883.01.T01 AT3G04590 39.785 93 56 0 77 169 174 266 3.95e-16 75.1
MsG0780039883.01.T01 AT3G04590 36.634 101 64 0 69 169 166 266 4.06e-16 75.9
MsG0780039883.01.T01 AT5G46640 42.708 96 53 1 47 142 155 248 8.64e-16 74.7
MsG0780039883.01.T01 AT4G00200 46.970 66 35 0 77 142 126 191 8.92e-16 74.3
MsG0780039883.01.T01 AT4G00200 46.970 66 35 0 77 142 126 191 8.92e-16 74.3
MsG0780039883.01.T01 AT4G22770 44.595 74 41 0 70 143 146 219 4.16e-15 72.4
MsG0780039883.01.T01 AT4G22770 44.595 74 41 0 70 143 146 219 4.16e-15 72.4
MsG0780039883.01.T01 AT1G63480 34.653 101 59 2 47 142 124 222 6.11e-14 69.3
MsG0780039883.01.T01 AT1G63480 34.653 101 59 2 47 142 124 222 6.11e-14 69.3
MsG0780039883.01.T01 AT1G63480 34.653 101 59 2 47 142 124 222 6.11e-14 69.3
MsG0780039883.01.T01 AT1G63480 34.653 101 59 2 47 142 124 222 6.11e-14 69.3
MsG0780039883.01.T01 AT1G63480 34.653 101 59 2 47 142 124 222 6.11e-14 69.3
MsG0780039883.01.T01 AT1G63480 34.653 101 59 2 47 142 130 228 6.25e-14 69.3
MsG0780039883.01.T01 AT1G63480 34.653 101 59 2 47 142 130 228 6.25e-14 69.3
MsG0780039883.01.T01 AT3G61310 38.384 99 58 1 47 142 134 232 7.47e-14 68.9

Find 71 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGTCCTTTGGTTGCTTC+TGG 0.229275 7:-70078285 MsG0780039883.01.T02:CDS
CTGCGGCAGCTGGCTGTCGC+AGG 0.309873 7:+70078447 None:intergenic
GTGATGATCACCGGTGGTTT+AGG 0.340424 7:+70078614 None:intergenic
TGTTGTTGTTGTTTCCATCT+TGG 0.360934 7:+70078735 None:intergenic
GACTCTCATCATGAACTTCT+AGG 0.366743 7:+70078762 None:intergenic
GAGGAAATGTGTTGGTCCTT+TGG 0.377217 7:-70078295 MsG0780039883.01.T02:CDS
TAGGCCGAGGGGAAGACCTC+CGG 0.391502 7:-70078651 MsG0780039883.01.T02:CDS
CACAACCACTACTTACTTCA+AGG 0.405675 7:+70078558 None:intergenic
TTTGAAATACTTTCTTTGTC+CGG 0.416555 7:-70078398 MsG0780039883.01.T02:CDS
TCCTTTGGTTGCTTCTGGAC+CGG 0.431676 7:-70078280 MsG0780039883.01.T02:CDS
ATGTCGTTGGTCGTAGGCCG+AGG 0.445591 7:-70078664 MsG0780039883.01.T02:CDS
GTTTCACCAAATCATGGTCT+TGG 0.447139 7:-70078689 MsG0780039883.01.T02:CDS
ATCTGTGTCCTTAGTGGGAG+TGG 0.450780 7:-70078488 MsG0780039883.01.T02:CDS
CTTGTAGCTCCTGGAGGAGC+TGG 0.454018 7:+70078359 None:intergenic
GAGAGAGTGCAAACACACTT+AGG 0.457579 7:-70078589 MsG0780039883.01.T02:CDS
CTGCGACAGCCAGCTGCCGC+AGG 0.457598 7:-70078446 MsG0780039883.01.T02:CDS
ACATCACCAAGACCATGATT+TGG 0.459277 7:+70078683 None:intergenic
AAACTAGGTCAAGCCCTTCA+TGG 0.462788 7:+70078708 None:intergenic
GACGAAGCGATGACAATAAC+CGG 0.472866 7:+70078261 None:intergenic
GTGTTCCTTGGTGGAGGCCA+AGG 0.474459 7:-70078329 MsG0780039883.01.T02:CDS
TTAGGTTTGTTCTTTGAGCC+CGG 0.481979 7:+70078632 None:intergenic
ACTACAGATCCTGCGGCAGC+TGG 0.485880 7:+70078437 None:intergenic
GACCTAGTTTCACCAAATCA+TGG 0.488286 7:-70078695 MsG0780039883.01.T02:CDS
ACACTCAAACTTGTAGCTCC+TGG 0.497020 7:+70078350 None:intergenic
TGCGGCAGCTGGCTGTCGCA+GGG 0.497075 7:+70078448 None:intergenic
TTGAGTGTGTTCCTTGGTGG+AGG 0.501228 7:-70078335 MsG0780039883.01.T02:CDS
GTATATGGCCGGCATAGACT+TGG 0.502697 7:-70078828 None:intergenic
CTCTCTCTTGTGATGATCAC+CGG 0.505990 7:+70078605 None:intergenic
AGGCCGAGGGGAAGACCTCC+GGG 0.506230 7:-70078650 MsG0780039883.01.T02:CDS
GGAGGCCAAGGTCAAGTTGT+GGG 0.510469 7:-70078317 MsG0780039883.01.T02:CDS
GCTCCTGGAGGAGCTGGTGG+TGG 0.510948 7:+70078365 None:intergenic
TTCCTCCCACAACTTGACCT+TGG 0.512592 7:+70078312 None:intergenic
TCATCATGAACTTCTAGGTC+AGG 0.525327 7:+70078767 None:intergenic
TCTTTGACGCTTTCTTGCAT+AGG 0.527877 7:+70078514 None:intergenic
ACAAGTTTGAGTGTGTTCCT+TGG 0.528630 7:-70078341 MsG0780039883.01.T02:CDS
CTTCTAGGTCAGGACGTTGA+AGG 0.529343 7:+70078777 None:intergenic
CTGTAGTGACTTTACATGGA+AGG 0.531297 7:-70078421 MsG0780039883.01.T02:CDS
CTACCACCACCAGCTCCTCC+AGG 0.536842 7:-70078368 MsG0780039883.01.T02:CDS
GAAAACTTTGAGTATATGGC+CGG 0.541422 7:-70078839 None:intergenic
AGAGAGTGCAAACACACTTA+GGG 0.541596 7:-70078588 MsG0780039883.01.T02:CDS
AGAGGGATCTGTGTCCTTAG+TGG 0.542753 7:-70078494 MsG0780039883.01.T02:CDS
TGGTGGTGGTAGAAACGATC+CGG 0.543958 7:+70078379 None:intergenic
GGATCTGTAGTGACTTTACA+TGG 0.549227 7:-70078425 MsG0780039883.01.T02:CDS
AGTTTGAGTGTGTTCCTTGG+TGG 0.550321 7:-70078338 MsG0780039883.01.T02:CDS
GAGGGATCTGTGTCCTTAGT+GGG 0.564060 7:-70078493 MsG0780039883.01.T02:CDS
TTGTGATGTGTTTGACTCTG+TGG 0.565684 7:-70078540 MsG0780039883.01.T02:CDS
TGCTGAACCCAAGTCTATGC+CGG 0.565994 7:+70078820 None:intergenic
TGTCGTTGGTCGTAGGCCGA+GGG 0.567292 7:-70078663 MsG0780039883.01.T02:CDS
GTAGCTCCTGGAGGAGCTGG+TGG 0.572143 7:+70078362 None:intergenic
GAGCCCGGAGGTCTTCCCCT+CGG 0.572413 7:+70078647 None:intergenic
TGACTGTTCCACTCCCACTA+AGG 0.581841 7:+70078480 None:intergenic
TTGGTGATGTCGTTGGTCGT+AGG 0.583407 7:-70078670 MsG0780039883.01.T02:CDS
TATATGGCCGGCATAGACTT+GGG 0.593016 7:-70078827 MsG0780039883.01.T02:CDS
CATGGTCTTGGTGATGTCGT+TGG 0.598739 7:-70078677 MsG0780039883.01.T02:CDS
GATGAGAGTCAAGACCAAGA+TGG 0.601725 7:-70078749 MsG0780039883.01.T02:CDS
ACAACAACAACAACCATGAA+GGG 0.608963 7:-70078721 MsG0780039883.01.T02:CDS
AAAGAACAAACCTAAACCAC+CGG 0.614484 7:-70078624 MsG0780039883.01.T02:CDS
GACCATGATTTGGTGAAACT+AGG 0.622258 7:+70078693 None:intergenic
CACATCCTTGAAGTAAGTAG+TGG 0.624516 7:-70078563 MsG0780039883.01.T02:CDS
ATGCAAGAAAGCGTCAAAGA+GGG 0.632366 7:-70078511 MsG0780039883.01.T02:CDS
TATGCAAGAAAGCGTCAAAG+AGG 0.636647 7:-70078512 MsG0780039883.01.T02:CDS
CTTGACCTTGGCCTCCACCA+AGG 0.637536 7:+70078324 None:intergenic
GTCGTTGGTCGTAGGCCGAG+GGG 0.652545 7:-70078662 MsG0780039883.01.T02:CDS
TCTCTTGTGATGATCACCGG+TGG 0.655714 7:+70078608 None:intergenic
TGGAGGCCAAGGTCAAGTTG+TGG 0.656888 7:-70078318 MsG0780039883.01.T02:CDS
GGCCAAGGTCAAGTTGTGGG+AGG 0.658605 7:-70078314 MsG0780039883.01.T02:CDS
ACCGGTCCAGAAGCAACCAA+AGG 0.664305 7:+70078279 None:intergenic
GGTTTGTTCTTTGAGCCCGG+AGG 0.679300 7:+70078635 None:intergenic
TAAAGTCACTACAGATCCTG+CGG 0.683988 7:+70078430 None:intergenic
CTCAAACTTGTAGCTCCTGG+AGG 0.685267 7:+70078353 None:intergenic
AGTTGTGGGAGGAAATGTGT+TGG 0.690645 7:-70078303 MsG0780039883.01.T02:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAAATACTTTCTTTGTC+CGG - Chr7:70078673-70078692 MsG0780039883.01.T02:CDS 25.0%
AAAGAACAAACCTAAACCAC+CGG - Chr7:70078447-70078466 MsG0780039883.01.T02:CDS 35.0%
AACAACAACAACAACCATGA+AGG - Chr7:70078349-70078368 MsG0780039883.01.T02:CDS 35.0%
ACAACAACAACAACCATGAA+GGG - Chr7:70078350-70078369 MsG0780039883.01.T02:CDS 35.0%
!! TGTTGTTGTTGTTTCCATCT+TGG + Chr7:70078339-70078358 None:intergenic 35.0%
ACAAGTTTGAGTGTGTTCCT+TGG - Chr7:70078730-70078749 MsG0780039883.01.T02:CDS 40.0%
ACATCACCAAGACCATGATT+TGG + Chr7:70078391-70078410 None:intergenic 40.0%
CACAACCACTACTTACTTCA+AGG + Chr7:70078516-70078535 None:intergenic 40.0%
CACATCCTTGAAGTAAGTAG+TGG - Chr7:70078508-70078527 MsG0780039883.01.T02:CDS 40.0%
CTGTAGTGACTTTACATGGA+AGG - Chr7:70078650-70078669 MsG0780039883.01.T02:CDS 40.0%
GACCTAGTTTCACCAAATCA+TGG - Chr7:70078376-70078395 MsG0780039883.01.T02:CDS 40.0%
GACTCTCATCATGAACTTCT+AGG + Chr7:70078312-70078331 None:intergenic 40.0%
GGATCTGTAGTGACTTTACA+TGG - Chr7:70078646-70078665 MsG0780039883.01.T02:CDS 40.0%
GTTTCACCAAATCATGGTCT+TGG - Chr7:70078382-70078401 MsG0780039883.01.T02:CDS 40.0%
TAAAGTCACTACAGATCCTG+CGG + Chr7:70078644-70078663 None:intergenic 40.0%
TCATCATGAACTTCTAGGTC+AGG + Chr7:70078307-70078326 None:intergenic 40.0%
TCTTTGACGCTTTCTTGCAT+AGG + Chr7:70078560-70078579 None:intergenic 40.0%
TTGTGATGTGTTTGACTCTG+TGG - Chr7:70078531-70078550 MsG0780039883.01.T02:CDS 40.0%
! AGAGAGTGCAAACACACTTA+GGG - Chr7:70078483-70078502 MsG0780039883.01.T02:CDS 40.0%
! TTAGGTTTGTTCTTTGAGCC+CGG + Chr7:70078442-70078461 None:intergenic 40.0%
!! ATGCAAGAAAGCGTCAAAGA+GGG - Chr7:70078560-70078579 MsG0780039883.01.T02:CDS 40.0%
!! GACCATGATTTGGTGAAACT+AGG + Chr7:70078381-70078400 None:intergenic 40.0%
!! TATGCAAGAAAGCGTCAAAG+AGG - Chr7:70078559-70078578 MsG0780039883.01.T02:CDS 40.0%
AAACTAGGTCAAGCCCTTCA+TGG + Chr7:70078366-70078385 None:intergenic 45.0%
ACACTCAAACTTGTAGCTCC+TGG + Chr7:70078724-70078743 None:intergenic 45.0%
AGTTGTGGGAGGAAATGTGT+TGG - Chr7:70078768-70078787 MsG0780039883.01.T02:CDS 45.0%
AGTTTGAGTGTGTTCCTTGG+TGG - Chr7:70078733-70078752 MsG0780039883.01.T02:CDS 45.0%
CTCTCTCTTGTGATGATCAC+CGG + Chr7:70078469-70078488 None:intergenic 45.0%
GACGAAGCGATGACAATAAC+CGG + Chr7:70078813-70078832 None:intergenic 45.0%
GATGAGAGTCAAGACCAAGA+TGG - Chr7:70078322-70078341 MsG0780039883.01.T02:CDS 45.0%
! GAGAGAGTGCAAACACACTT+AGG - Chr7:70078482-70078501 MsG0780039883.01.T02:CDS 45.0%
! GAGGAAATGTGTTGGTCCTT+TGG - Chr7:70078776-70078795 MsG0780039883.01.T02:CDS 45.0%
AGAGGGATCTGTGTCCTTAG+TGG - Chr7:70078577-70078596 MsG0780039883.01.T02:CDS 50.0%
ATCTGTGTCCTTAGTGGGAG+TGG - Chr7:70078583-70078602 MsG0780039883.01.T02:CDS 50.0%
CTCAAACTTGTAGCTCCTGG+AGG + Chr7:70078721-70078740 None:intergenic 50.0%
CTTCTAGGTCAGGACGTTGA+AGG + Chr7:70078297-70078316 None:intergenic 50.0%
GAGGGATCTGTGTCCTTAGT+GGG - Chr7:70078578-70078597 MsG0780039883.01.T02:CDS 50.0%
GTGATGATCACCGGTGGTTT+AGG + Chr7:70078460-70078479 None:intergenic 50.0%
GTTGGTCCTTTGGTTGCTTC+TGG - Chr7:70078786-70078805 MsG0780039883.01.T02:CDS 50.0%
TCCTTTGGTTGCTTCTGGAC+CGG - Chr7:70078791-70078810 MsG0780039883.01.T02:CDS 50.0%
TCTCTTGTGATGATCACCGG+TGG + Chr7:70078466-70078485 None:intergenic 50.0%
TGACTGTTCCACTCCCACTA+AGG + Chr7:70078594-70078613 None:intergenic 50.0%
TGCTGAACCCAAGTCTATGC+CGG + Chr7:70078254-70078273 None:intergenic 50.0%
TTCCTCCCACAACTTGACCT+TGG + Chr7:70078762-70078781 None:intergenic 50.0%
TTGAGTGTGTTCCTTGGTGG+AGG - Chr7:70078736-70078755 MsG0780039883.01.T02:CDS 50.0%
!! CATGGTCTTGGTGATGTCGT+TGG - Chr7:70078394-70078413 MsG0780039883.01.T02:CDS 50.0%
!! TGGTGGTGGTAGAAACGATC+CGG + Chr7:70078695-70078714 None:intergenic 50.0%
!! TTGGTGATGTCGTTGGTCGT+AGG - Chr7:70078401-70078420 MsG0780039883.01.T02:CDS 50.0%
ACCGGTCCAGAAGCAACCAA+AGG + Chr7:70078795-70078814 None:intergenic 55.0%
! GGAGGCCAAGGTCAAGTTGT+GGG - Chr7:70078754-70078773 MsG0780039883.01.T02:CDS 55.0%
! GGTTTGTTCTTTGAGCCCGG+AGG + Chr7:70078439-70078458 None:intergenic 55.0%
! TGGAGGCCAAGGTCAAGTTG+TGG - Chr7:70078753-70078772 MsG0780039883.01.T02:CDS 55.0%
ACTACAGATCCTGCGGCAGC+TGG + Chr7:70078637-70078656 None:intergenic 60.0%
ATGTCGTTGGTCGTAGGCCG+AGG - Chr7:70078407-70078426 MsG0780039883.01.T02:CDS 60.0%
CTTGACCTTGGCCTCCACCA+AGG + Chr7:70078750-70078769 None:intergenic 60.0%
CTTGTAGCTCCTGGAGGAGC+TGG + Chr7:70078715-70078734 None:intergenic 60.0%
GTGTTCCTTGGTGGAGGCCA+AGG - Chr7:70078742-70078761 MsG0780039883.01.T02:CDS 60.0%
TGTCGTTGGTCGTAGGCCGA+GGG - Chr7:70078408-70078427 MsG0780039883.01.T02:CDS 60.0%
! GGCCAAGGTCAAGTTGTGGG+AGG - Chr7:70078757-70078776 MsG0780039883.01.T02:CDS 60.0%
CTACCACCACCAGCTCCTCC+AGG - Chr7:70078703-70078722 MsG0780039883.01.T02:CDS 65.0%
GTAGCTCCTGGAGGAGCTGG+TGG + Chr7:70078712-70078731 None:intergenic 65.0%
GTCGTTGGTCGTAGGCCGAG+GGG - Chr7:70078409-70078428 MsG0780039883.01.T02:CDS 65.0%
TAGGCCGAGGGGAAGACCTC+CGG - Chr7:70078420-70078439 MsG0780039883.01.T02:CDS 65.0%
AGGCCGAGGGGAAGACCTCC+GGG - Chr7:70078421-70078440 MsG0780039883.01.T02:CDS 70.0%
GAGCCCGGAGGTCTTCCCCT+CGG + Chr7:70078427-70078446 None:intergenic 70.0%
GCTCCTGGAGGAGCTGGTGG+TGG + Chr7:70078709-70078728 None:intergenic 70.0%
TGCGGCAGCTGGCTGTCGCA+GGG + Chr7:70078626-70078645 None:intergenic 70.0%
CTGCGACAGCCAGCTGCCGC+AGG - Chr7:70078625-70078644 MsG0780039883.01.T02:CDS 75.0%
CTGCGGCAGCTGGCTGTCGC+AGG + Chr7:70078627-70078646 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 70078247 70078846 70078247 ID=MsG0780039883.01;Name=MsG0780039883.01
Chr7 mRNA 70078247 70078846 70078247 ID=MsG0780039883.01.T01;Parent=MsG0780039883.01;Name=MsG0780039883.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|0|0|2|0|188
Chr7 exon 70078247 70078686 70078247 ID=MsG0780039883.01.T01:exon:13012;Parent=MsG0780039883.01.T01
Chr7 exon 70078720 70078846 70078720 ID=MsG0780039883.01.T01:exon:13011;Parent=MsG0780039883.01.T01
Chr7 CDS 70078720 70078846 70078720 ID=MsG0780039883.01.T01:cds;Parent=MsG0780039883.01.T01
Chr7 CDS 70078247 70078686 70078247 ID=MsG0780039883.01.T01:cds;Parent=MsG0780039883.01.T01
Chr7 mRNA 70078247 70078846 70078247 ID=MsG0780039883.01.T02;Parent=MsG0780039883.01;Name=MsG0780039883.01.T02;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|199
Chr7 exon 70078247 70078846 70078247 ID=MsG0780039883.01.T02:exon:13013;Parent=MsG0780039883.01.T02
Chr7 CDS 70078247 70078846 70078247 ID=MsG0780039883.01.T02:cds;Parent=MsG0780039883.01.T02
Gene Sequence

>MsG0780039883.01.T02

ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGCCTTCAACGTCCTGACCTAGAAGTTCATGATGAGAGTCAAGACCAAGATGGAAACAACAACAACAACAACCATGAAGGGCTTGACCTAGTTTCACCAAATCATGGTCTTGGTGATGTCGTTGGTCGTAGGCCGAGGGGAAGACCTCCGGGCTCAAAGAACAAACCTAAACCACCGGTGATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAAGTAAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTTAGTGGGAGTGGAACAGTCACTAACGTGACCCTGCGACAGCCAGCTGCCGCAGGATCTGTAGTGACTTTACATGGAAGGTTTGAAATACTTTCTTTGTCCGGATCGTTTCTACCACCACCAGCTCCTCCAGGAGCTACAAGTTTGAGTGTGTTCCTTGGTGGAGGCCAAGGTCAAGTTGTGGGAGGAAATGTGTTGGTCCTTTGGTTGCTTCTGGACCGGTTATTGTCATCGCTTCGTCTTTTACGAATGTAG

>MsG0780039883.01.T01

ATGGCCGGCATAGACTTGGGTTCAGCATCACAACACTTTGTTCATCGCCTTCAACGTCCTGACCTAGAAGTTCATGATGAGAGTCAAGACCAAGATGGAAACAACAACAACAACAACCATGAAGGGCATGTCGTTGGTCGTAGGCCGAGGGGAAGACCTCCGGGCTCAAAGAACAAACCTAAACCACCGGTGATCATCACAAGAGAGAGTGCAAACACACTTAGGGCTCACATCCTTGAAGTAAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCTACCTATGCAAGAAAGCGTCAAAGAGGGATCTGTGTCCTTAGTGGGAGTGGAACAGTCACTAACGTGACCCTGCGACAGCCAGCTGCCGCAGGATCTGTAGTGACTTTACATGGAAGGTTTGAAATACTTTCTTTGTCCGGATCGTTTCTACCACCACCAGCTCCTCCAGGAGCTACAAGTTTGAGTGTGTTCCTTGGTGGAGGCCAAGGTCAAGTTGTGGGAGGAAATGTGTTGGTCCTTTGGTTGCTTCTGGACCGGTTATTGTCATCGCTTCGTCTTTTACGAATGTAG

Protein sequence

>MsG0780039883.01.T02

MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNNNNHEGLDLVSPNHGLGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVLVLWLLLDRLLSSLRLLRM*

>MsG0780039883.01.T01

MAGIDLGSASQHFVHRLQRPDLEVHDESQDQDGNNNNNNHEGHVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSVFLGGGQGQVVGGNVLVLWLLLDRLLSSLRLLRM*