AlfalfaGEDB | MsG0180004399.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004399.01

KEGG: -
GO: GO:0043531
PFAM: PF00931

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004399.01.T01	RHN80555.1	91.95	559	44	1	1	558	29	587	0	1055

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004399.01.T01	Q7XBQ9	38.795	531	297	11	9	533	1	509	3.01E-102	333

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004399.01.T01	A0A396JWJ2	91.950	559	44	1	1	558	29	587	0.0	1055

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004399.01	MsG0180004486.01	0.806019	1.007738e-49	5.411778e-47
MsG0180004399.01	MsG0280007208.01	0.824311	8.648140e-54	7.631555e-51
MsG0180004399.01	MsG0380015702.01	0.804743	1.865324e-49	9.694527e-47
MsG0180004399.01	MsG0380016812.01	-0.851299	9.713905e-61	1.957522e-57
MsG0180004399.01	MsG0780040389.01	0.802836	4.643864e-49	2.298128e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004399.01.T01	MTR_1g078490	91.950	559	44	1	1	558	1	559	0.0	1053
MsG0180004399.01.T01	MTR_7g078300	69.735	565	163	3	1	557	1	565	0.0	804
MsG0180004399.01.T01	MTR_7g078640	68.917	563	167	3	1	555	1	563	0.0	792
MsG0180004399.01.T01	MTR_4g119195	68.947	570	165	5	1	558	1	570	0.0	785
MsG0180004399.01.T01	MTR_4g119195	68.947	570	165	5	1	558	1	570	0.0	782
MsG0180004399.01.T01	MTR_5g076840	67.483	572	172	5	1	558	1	572	0.0	766
MsG0180004399.01.T01	MTR_4g119140	61.364	572	153	8	1	558	1	518	0.0	664
MsG0180004399.01.T01	MTR_7g091550	52.850	579	252	8	1	558	3	581	0.0	587
MsG0180004399.01.T01	MTR_7g091550	52.217	406	176	6	82	469	917	1322	4.31e-126	401
MsG0180004399.01.T01	MTR_1g047910	51.903	578	256	7	1	556	1	578	0.0	558

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004399.01.T01	AT3G14470	36.133	512	294	13	35	530	39	533	9.61e-88	293
MsG0180004399.01.T01	AT3G14470	36.133	512	294	13	35	530	39	533	9.61e-88	293
MsG0180004399.01.T01	AT3G14460	32.438	521	296	16	35	529	36	526	4.11e-68	239
MsG0180004399.01.T01	AT3G46530	27.032	529	356	15	8	521	4	517	1.30e-57	206
MsG0180004399.01.T01	AT1G58807	29.572	514	313	14	23	506	19	513	6.05e-57	205
MsG0180004399.01.T01	AT1G59124	29.572	514	313	14	23	506	19	513	6.05e-57	205
MsG0180004399.01.T01	AT1G58848	29.259	540	333	15	23	532	19	539	1.02e-56	206
MsG0180004399.01.T01	AT1G59218	29.259	540	333	15	23	532	19	539	1.02e-56	206
MsG0180004399.01.T01	AT1G59218	29.259	540	333	15	23	532	19	539	1.02e-56	206
MsG0180004399.01.T01	AT1G59218	29.259	540	333	15	23	532	19	539	1.02e-56	206

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Find 97 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGGAGCTTCGTGAA+TGG	0.535602	1:+77488880	MsG0180004399.01.T01:CDS
AAAATCGTCAATAACGTCTT+CGG	0.513452	1:-77488934	None:intergenic
AAACAAGTCGTCGATACTTC+CGG	0.441650	1:+77488975	MsG0180004399.01.T01:CDS
AAAGAAGCTTCTCTTGCGCT+GGG	0.527042	1:+77488774	MsG0180004399.01.T01:CDS
AAAGATATTGTGCCTAAATG+TGG	0.579618	1:+77489779	MsG0180004399.01.T01:CDS
AAAGGAAGCCCTCCACATTT+AGG	0.343680	1:-77489791	None:intergenic
AAGTATGGTTCTCAAACCTC+TGG	0.437840	1:-77490320	None:intergenic
ACAAAAGTGGAAGTCTGTTA+GGG	0.522551	1:+77489859	MsG0180004399.01.T01:CDS
ACGACTCTGCAAGGCCGAAG+AGG	0.631128	1:-77488722	None:intergenic
ACGCATATCCACATCTTTAA+TGG	0.265665	1:-77489365	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATCGTCAATAACGTCTT+CGG	-	Chr1:77488937-77488956	None:intergenic	30.0%
AAAGATATTGTGCCTAAATG+TGG	+	Chr1:77489779-77489798	MsG0180004399.01.T01:CDS	30.0%
ACTTACACTTACAATTTGCA+AGG	+	Chr1:77489665-77489684	MsG0180004399.01.T01:CDS	30.0%
CATCAATCTCTTTGATGTTA+AGG	-	Chr1:77489133-77489152	None:intergenic	30.0%
CTCTAATTTCTTGCAAATCT+TGG	-	Chr1:77488806-77488825	None:intergenic	30.0%
CTTACACTTACAATTTGCAA+GGG	+	Chr1:77489666-77489685	MsG0180004399.01.T01:CDS	30.0%
GTAAATGATTCTGATGTGAT+AGG	+	Chr1:77489188-77489207	MsG0180004399.01.T01:CDS	30.0%
TCACATCAGAATCATTTACA+CGG	-	Chr1:77489187-77489206	None:intergenic	30.0%
TTGCAAATTGTAAGTGTAAG+TGG	-	Chr1:77489666-77489685	None:intergenic	30.0%
ACAAAAGTGGAAGTCTGTTA+GGG	+	Chr1:77489859-77489878	MsG0180004399.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	77488708	77490384	77488708	ID=MsG0180004399.01;Name=MsG0180004399.01
Chr1	mRNA	77488708	77490384	77488708	ID=MsG0180004399.01.T01;Parent=MsG0180004399.01;Name=MsG0180004399.01.T01;_AED=0.18;_eAED=0.18;_QI=0\|-1\|1\|1\|-1\|1\|1\|0\|558
Chr1	exon	77488708	77490384	77488708	ID=MsG0180004399.01.T01:exon:7198;Parent=MsG0180004399.01.T01
Chr1	CDS	77488708	77490384	77488708	ID=MsG0180004399.01.T01:cds;Parent=MsG0180004399.01.T01

Gene Sequence

>MsG0180004399.01.T01

ATGGCTGAATCGCTCCTCTTCGGCCTTGCAGAGTCGTTCATTGTGAAACTAGCTTCTTGTGCTGTTAAAGAAGCTTCTCTTGCGCTGGGCGTCTACCAAGATTTGCAAGAAATTAGAGACACCATTTCATTCATCAAAGCAGTGCTGCTGGATGCTGAGAAAAAGCAGCATCAAAACCAGGAGCTTCGTGAATGGATGAGACAGATTAAGCGCATCTTCTCCAAAGCCGAAGACGTTATTGACGATTTTCAGTGCGAGGCACTACAGAAACAAGTCGTCGATACTTCCGGCAGTAAGAGAAAGAAGGTACGCCGTTTCTTATCAAGTTCTAATCCTCTTGTTTACCGCCTTAAAATGGCGCATCGTATCAAACATATCAAAGAGAGCTTCGATAAGGTTGCAAAATTTAGAGATAAATTTGGCCTTAACATCAAAGAGATTGATGACCGTGTTGTGCAAAGGCGGGAAACTCATTCCCGTGTAAATGATTCTGATGTGATAGGAAGGGAACAAGATAAAAAGGAAATTGTAAAGCTCTTATTCGATGATAGTGATGATAAAAGTCTATCTGTTGTTGCTATTGCGGGACTTGGAGGTATGGGAAAGACTACACTTGCAAAACTTGTGTTTAATGATAAGAGTATAGTTGACTCTTTTCCATTAAAGATGTGGATATGCGTCTCAGATGATTTTGATGTTAAGAATCTGCTTGTTAAGATTATTGAATCTGCTCCTGACCAAAATCATCAGGAGAACATTAAAAACTTTAGTTTGGAGCAACTGCAAAATCATCTTAGAAACATACTTGCTGGTCAAAAGTTCTTACTTGTATTGGACGATGTGTGGAATGAGAACCGTGTCAAATGGGAAGAATTGAGGGGTTTAATACCAGCAGGTGCTCAAGGAAGTAAAGTACTAGTGACTTCACGTAGCGACACAGTAGCTAAGATGATGGCCACTTACACTTACAATTTGCAAGGGCTTTCTAAAGAGGACTCATTGTCAGTATTTGTAAAATGGGCTTTTAAAGAGGGAGAAGAGAGAAAACATCCTGAACTAATGGAGATTGGAAAAGATATTGTGCCTAAATGTGGAGGGCTTCCTTTGGCCCTAAGGACATTGGGGAGTTCGCTGTTCTTAGAAGTTGATATACAAAAGTGGAAGTCTGTTAGGGACAATGAGATTTGGAATTTACCGCAAAAAGATGAGGACATTTTACCAGCTATCAAATTAAGTTATGATCAATTACCTTCTTATTTAAAACAATGTTTTGCTTGCTTCTCCCTCTTTGAAAAAGACTTCCATTTCAACAGTTTTCATACAATTGTACTCTGGGAGGCACTTGGTTTTCTTCAATCACCAAACCAGGGTGGCACTTTGAAAGAAATTGGCAATCAGTTTTTACAAGAGCTACGGTCAAGATCTTTTCTTCAAGATTTTATTGACTATGGCAGTGGTTGCAAATTCAAATTGCACGATCTAGTGCATGACCTTGCAATGTATGTTTCAAGAGACGAGTTTCAATTGTTGAACTCCCATAGTGACAATATATCTGAAAATGCCTTACATTTGTCATTTACTAAAAATTATTTGTTTGGAAAAACTCCACTTCCCAGAGGTTTGAGAACCATACTTTTCCCTGTCGGAGTCAACAACGAAGCTTTCTTGAATACTTAG

Protein sequence

>MsG0180004399.01.T01

MAESLLFGLAESFIVKLASCAVKEASLALGVYQDLQEIRDTISFIKAVLLDAEKKQHQNQELREWMRQIKRIFSKAEDVIDDFQCEALQKQVVDTSGSKRKKVRRFLSSSNPLVYRLKMAHRIKHIKESFDKVAKFRDKFGLNIKEIDDRVVQRRETHSRVNDSDVIGREQDKKEIVKLLFDDSDDKSLSVVAIAGLGGMGKTTLAKLVFNDKSIVDSFPLKMWICVSDDFDVKNLLVKIIESAPDQNHQENIKNFSLEQLQNHLRNILAGQKFLLVLDDVWNENRVKWEELRGLIPAGAQGSKVLVTSRSDTVAKMMATYTYNLQGLSKEDSLSVFVKWAFKEGEERKHPELMEIGKDIVPKCGGLPLALRTLGSSLFLEVDIQKWKSVRDNEIWNLPQKDEDILPAIKLSYDQLPSYLKQCFACFSLFEKDFHFNSFHTIVLWEALGFLQSPNQGGTLKEIGNQFLQELRSRSFLQDFIDYGSGCKFKLHDLVHDLAMYVSRDEFQLLNSHSDNISENALHLSFTKNYLFGKTPLPRGLRTILFPVGVNNEAFLNT*