AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004486.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004486.01.T01 MTR_1g080860 96.380 221 6 2 1 219 1 221 1.53e-146 410
MsG0180004486.01.T01 MTR_1g080860 96.380 221 6 2 1 219 1 221 1.75e-146 410
MsG0180004486.01.T01 MTR_1g093240 60.476 210 65 5 15 219 8 204 4.59e-75 227
MsG0180004486.01.T01 MTR_1g093240 60.476 210 65 5 15 219 8 204 1.15e-74 227
MsG0180004486.01.T01 MTR_1g093240 60.476 210 65 5 15 219 8 204 1.67e-74 227
MsG0180004486.01.T01 MTR_1g070520 62.085 211 60 6 17 219 15 213 3.77e-73 224
MsG0180004486.01.T01 MTR_7g096090 56.604 212 81 4 15 219 11 218 5.16e-66 206
MsG0180004486.01.T01 MTR_5g030710 44.706 255 89 8 15 219 51 303 3.10e-55 181
MsG0180004486.01.T01 MTR_8g067530 43.798 258 84 8 15 219 75 324 9.71e-54 177
MsG0180004486.01.T01 MTR_2g101500 42.909 275 84 9 13 218 23 293 2.82e-53 176
MsG0180004486.01.T01 MTR_6g488150 45.887 231 74 8 15 218 15 221 2.24e-52 171
MsG0180004486.01.T01 MTR_8g103030 43.145 248 88 7 15 219 24 261 2.32e-52 172
MsG0180004486.01.T01 MTR_5g067350 44.094 254 90 7 15 219 65 315 3.11e-51 171
MsG0180004486.01.T01 MTR_1g070830 43.269 208 77 5 15 219 12 181 3.80e-41 140
MsG0180004486.01.T01 MTR_1g040675 40.488 205 79 6 15 219 1 162 4.76e-40 137
MsG0180004486.01.T01 MTR_1g040675 40.000 205 80 7 15 219 1 162 1.06e-39 135
MsG0180004486.01.T01 MTR_1g076270 42.439 205 61 8 15 219 11 158 8.01e-39 134
MsG0180004486.01.T01 MTR_1g093350 42.439 205 61 8 15 219 11 158 8.01e-39 134
MsG0180004486.01.T01 MTR_6g488150 41.848 184 58 7 15 173 15 174 1.06e-30 113
MsG0180004486.01.T01 MTR_5g067350 39.423 208 75 6 15 173 65 270 7.81e-28 108
MsG0180004486.01.T01 MTR_2g102490 38.835 206 66 10 18 218 17 167 6.82e-26 100
MsG0180004486.01.T01 MTR_2g100780 35.088 228 110 9 21 218 18 237 4.88e-25 100
MsG0180004486.01.T01 MTR_2g100780 35.088 228 110 9 21 218 18 237 6.67e-25 100
MsG0180004486.01.T01 MTR_1g069495 36.788 193 84 6 96 253 81 270 7.12e-25 100
MsG0180004486.01.T01 MTR_8g014520 34.348 230 117 10 21 218 16 243 1.18e-24 99.8
MsG0180004486.01.T01 MTR_8g014520 34.348 230 117 10 21 218 16 243 1.42e-24 99.4
MsG0180004486.01.T01 MTR_4g011880 38.835 206 62 8 15 220 6 147 2.76e-24 96.3
MsG0180004486.01.T01 MTR_3g106850 29.600 125 69 4 97 220 88 194 1.97e-13 67.8
MsG0180004486.01.T01 MTR_4g124300 33.594 128 53 5 95 219 69 167 4.73e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004486.01.T01 AT3G04730 61.468 218 58 6 14 219 1 204 3.53e-78 236
MsG0180004486.01.T01 AT4G14550 60.976 205 69 4 15 218 1 195 6.68e-76 229
MsG0180004486.01.T01 AT4G14550 60.976 205 69 4 15 218 1 195 1.15e-75 229
MsG0180004486.01.T01 AT4G14550 60.976 205 69 4 15 218 1 195 2.87e-75 229
MsG0180004486.01.T01 AT3G23050 57.746 213 76 5 14 219 5 210 3.58e-74 225
MsG0180004486.01.T01 AT3G23050 57.746 213 76 5 14 219 5 210 7.74e-74 226
MsG0180004486.01.T01 AT1G04250 54.854 206 75 6 15 218 7 196 2.49e-66 206
MsG0180004486.01.T01 AT4G29080 48.583 247 86 9 9 219 32 273 4.00e-58 187
MsG0180004486.01.T01 AT5G65670 45.703 256 91 9 7 219 54 304 2.96e-50 168
MsG0180004486.01.T01 AT5G65670 45.703 256 91 9 7 219 54 304 3.34e-50 168
MsG0180004486.01.T01 AT2G22670 42.972 249 90 6 15 219 47 287 6.19e-50 167
MsG0180004486.01.T01 AT2G22670 42.972 249 90 6 15 219 47 287 6.19e-50 167
MsG0180004486.01.T01 AT2G22670 42.972 249 90 6 15 219 47 287 6.34e-50 167
MsG0180004486.01.T01 AT2G22670 42.972 249 90 6 15 219 47 287 6.34e-50 167
MsG0180004486.01.T01 AT2G22670 42.972 249 90 6 15 219 64 304 8.43e-50 167
MsG0180004486.01.T01 AT4G14550 57.500 160 57 4 15 173 1 150 1.90e-47 156
MsG0180004486.01.T01 AT1G04240 43.689 206 72 7 14 219 4 165 7.02e-47 155
MsG0180004486.01.T01 AT1G04240 45.146 206 69 8 14 219 104 265 1.20e-45 155
MsG0180004486.01.T01 AT3G23050 53.293 167 64 5 14 173 5 164 2.98e-45 150
MsG0180004486.01.T01 AT5G43700 45.146 206 59 8 14 219 10 161 1.90e-44 149
MsG0180004486.01.T01 AT3G23030 39.252 214 59 6 10 219 4 150 7.64e-35 123
MsG0180004486.01.T01 AT3G23030 38.785 214 60 5 10 219 91 237 4.96e-34 124
MsG0180004486.01.T01 AT4G14560 38.537 205 62 6 15 219 7 147 1.77e-33 120
MsG0180004486.01.T01 AT3G15540 40.284 211 70 9 15 218 6 167 1.07e-30 113
MsG0180004486.01.T01 AT1G15580 37.379 206 59 7 15 219 8 144 4.58e-29 108
MsG0180004486.01.T01 AT2G33310 40.491 163 75 6 73 218 53 210 7.28e-27 105
MsG0180004486.01.T01 AT3G16500 34.199 231 111 9 8 218 26 235 3.81e-26 103
MsG0180004486.01.T01 AT3G16500 34.199 231 111 9 8 218 26 235 5.97e-26 102
MsG0180004486.01.T01 AT2G33310 39.877 163 75 6 73 218 53 209 1.62e-25 101
MsG0180004486.01.T01 AT2G33310 39.877 163 75 6 73 218 53 209 1.62e-25 101
MsG0180004486.01.T01 AT1G52830 36.765 204 83 8 15 218 6 163 2.05e-25 99.8
MsG0180004486.01.T01 AT1G04550 39.375 160 60 6 83 218 56 202 2.00e-24 98.2
MsG0180004486.01.T01 AT4G28640 42.647 136 61 5 97 218 88 220 2.44e-23 95.5
MsG0180004486.01.T01 AT4G28640 42.336 137 62 5 96 218 87 220 2.96e-23 95.5
MsG0180004486.01.T01 AT1G51950 33.906 233 101 9 10 218 30 233 1.78e-22 93.6
MsG0180004486.01.T01 AT4G28640 42.647 136 61 5 97 218 88 220 1.89e-22 94.4
MsG0180004486.01.T01 AT1G04100 35.398 226 112 8 24 218 16 238 4.56e-19 84.3
MsG0180004486.01.T01 AT3G17600 35.294 119 52 3 101 219 48 141 5.68e-17 76.3
MsG0180004486.01.T01 AT5G25890 34.132 167 83 5 54 219 7 147 9.74e-17 76.3
MsG0180004486.01.T01 AT1G80390 33.553 152 55 4 20 171 19 124 4.08e-13 65.1
MsG0180004486.01.T01 AT4G32280 27.607 163 71 4 85 218 82 226 5.50e-12 64.3
MsG0180004486.01.T01 AT4G32280 36.905 84 35 2 135 218 119 184 9.12e-12 63.2
MsG0180004486.01.T01 AT2G46990 37.647 85 40 1 135 219 86 157 1.72e-11 61.2
MsG0180004486.01.T01 AT2G46990 37.647 85 40 1 135 219 86 157 2.50e-11 61.2
MsG0180004486.01.T01 AT3G62100 36.471 85 41 1 135 219 84 155 5.67e-11 60.1
MsG0180004486.01.T01 AT3G62100 37.647 85 40 2 135 219 84 155 9.71e-11 59.7

Find 109 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAACTCTTGTACAATTTA+AGG 0.136546 1:+78758523 None:intergenic
GCAAGATCCTTTGTAGTATT+AGG 0.256993 1:-78757426 MsG0180004486.01.T01:three_prime_UTR
TATATTTGGTGAAGGGGTTA+TGG 0.280748 1:+78761052 None:intergenic
GATGAAGCAGAATCATTTAT+AGG 0.292641 1:+78760724 None:intergenic
CTCGAGCCAACTTGCTTCCT+TGG 0.317287 1:+78757836 None:intergenic
AAATTAGGTGGAAATTCATT+AGG 0.319576 1:-78757696 MsG0180004486.01.T01:three_prime_UTR
ATGTTTCCAGTTATCATTGC+TGG 0.325654 1:-78757563 MsG0180004486.01.T01:three_prime_UTR
ATACCATGTGCTTGTTGTTA+CGG 0.346756 1:-78757312 MsG0180004486.01.T01:three_prime_UTR
TCATAAAGTCCTTGGTAACT+TGG 0.357262 1:+78758439 None:intergenic
ATATTTGGTGAAGGGGTTAT+GGG 0.360734 1:+78761053 None:intergenic
GAGTTACGACTCGGTCTTCC+AGG 0.382644 1:-78760841 MsG0180004486.01.T01:CDS
TTATATATGAATGAGAAATT+AGG 0.392785 1:-78757711 MsG0180004486.01.T01:three_prime_UTR
TTCTTTCTGAAAGATCTAAC+TGG 0.401360 1:+78758666 None:intergenic
TCGAGCCAACTTGCTTCCTT+GGG 0.403910 1:+78757837 None:intergenic
AAGGAAAAGGCAGGCAAGTA+GGG 0.404980 1:-78761221 MsG0180004486.01.T01:five_prime_UTR
ACAAATCCAGCAATGATAAC+TGG 0.406835 1:+78757557 None:intergenic
TTTGGTGATATATTTGGTGA+AGG 0.407964 1:+78761044 None:intergenic
TTGGTGATATATTTGGTGAA+GGG 0.409957 1:+78761045 None:intergenic
GTGCGTTTAGAAGATGGTTT+TGG 0.410984 1:+78761026 None:intergenic
AGGTCCACCTTACGTAGATA+TGG 0.411796 1:+78758543 None:intergenic
CTTGTCTGTCAAGTTGTAAA+TGG 0.415347 1:-78757387 MsG0180004486.01.T01:three_prime_UTR
CCTTCACAATTGACAATTGT+GGG 0.417767 1:-78758464 MsG0180004486.01.T01:CDS
CAATAAATATGATACGTATA+AGG 0.420782 1:+78757478 None:intergenic
AAGAGAAAATGACTAACGTT+GGG 0.423757 1:-78760909 MsG0180004486.01.T01:exon
AAAGGCAGGCAAGTAGGGGC+AGG 0.426754 1:-78761216 MsG0180004486.01.T01:five_prime_UTR
GTATGGGTCCACCATGTTCA+TGG 0.428942 1:+78757331 None:intergenic
GGATTATAAGGGTATTTGTC+GGG 0.430685 1:+78761124 None:intergenic
CACCATGTTCATGGATCTAA+AGG 0.433435 1:+78757340 None:intergenic
GCTTTCATTCATAAAGTCCT+TGG 0.434299 1:+78758431 None:intergenic
AATTAGGTGGAAATTCATTA+GGG 0.434858 1:-78757695 MsG0180004486.01.T01:three_prime_UTR
AGTAAGGTCGAGGCTAATAT+AGG 0.437617 1:-78757815 MsG0180004486.01.T01:exon
TGCTTGTTGGTGATGTTCCA+TGG 0.442945 1:-78758341 MsG0180004486.01.T01:CDS
TTGTAGTGGACATACTAGTT+TGG 0.446414 1:+78761192 None:intergenic
CTTGTTGTTACGGCCCTCAA+TGG 0.460729 1:-78757302 MsG0180004486.01.T01:three_prime_UTR
AGCACAAGTGGTGGTGGGAA+TGG 0.463834 1:-78758597 MsG0180004486.01.T01:CDS
TGGAGATGTTGACACGTGTA+TGG 0.465271 1:+78761089 None:intergenic
AAAGGAAAAGGCAGGCAAGT+AGG 0.470110 1:-78761222 MsG0180004486.01.T01:five_prime_UTR
CCAGCGCATCTGACAGCTCT+TGG 0.472063 1:+78758502 None:intergenic
AATTTGTAGGGCACAAGTTG+TGG 0.477874 1:-78758697 MsG0180004486.01.T01:intron
CATAATCAGAACCGTTCAAA+AGG 0.478352 1:+78758397 None:intergenic
CCATCTTTGTCTTCATATGT+TGG 0.478384 1:+78758372 None:intergenic
CCAAGAGCTGTCAGATGCGC+TGG 0.479602 1:-78758502 MsG0180004486.01.T01:CDS
GATAAGAGCACAAGTGGTGG+TGG 0.485348 1:-78758603 MsG0180004486.01.T01:CDS
TGGATTATAAGGGTATTTGT+CGG 0.488260 1:+78761123 None:intergenic
GAAGCAAGTTGGCTCGAGTA+AGG 0.490808 1:-78757831 MsG0180004486.01.T01:CDS
TGTTAATTGGTGGGTAGCAA+AGG 0.491610 1:-78761240 MsG0180004486.01.T01:five_prime_UTR
TCCTTCACAATTGACAATTG+TGG 0.492530 1:-78758465 MsG0180004486.01.T01:CDS
ATGAAGACAAAGATGGTGAT+TGG 0.495668 1:-78758365 MsG0180004486.01.T01:CDS
ATTTGGTGAAGGGGTTATGG+GGG 0.518976 1:+78761055 None:intergenic
GTTGTTACGGCCCTCAATGG+AGG 0.518996 1:-78757299 MsG0180004486.01.T01:three_prime_UTR
TGTCAACATCTCCATCCATA+TGG 0.521501 1:-78761080 MsG0180004486.01.T01:five_prime_UTR
GATGGTGATTGGATGCTTGT+TGG 0.521825 1:-78758354 MsG0180004486.01.T01:CDS
GTAACAACAAGCACATGGTA+TGG 0.524061 1:+78757314 None:intergenic
GTAGTGGATCCCTCCATTGA+GGG 0.524101 1:+78757289 None:intergenic
TGGTGATATATTTGGTGAAG+GGG 0.529685 1:+78761046 None:intergenic
CATAAAGTCCTTGGTAACTT+GGG 0.531177 1:+78758440 None:intergenic
TCTCCGTGATCACCTGCACC+TGG 0.533867 1:+78760823 None:intergenic
GCTTGTTGGTGATGTTCCAT+GGG 0.534588 1:-78758340 MsG0180004486.01.T01:CDS
GCAGATTTATCAACCAGAAG+TGG 0.545785 1:+78757862 None:intergenic
TTGTTACGGCCCTCAATGGA+GGG 0.545964 1:-78757298 MsG0180004486.01.T01:three_prime_UTR
TGGAAGACCGAGTCGTAACT+CGG 0.546250 1:+78760843 None:intergenic
GGGTATTTGTCGGGAAAATG+AGG 0.548025 1:+78761133 None:intergenic
TGGGAATGGAGCATTTGTTA+AGG 0.549372 1:-78758583 MsG0180004486.01.T01:CDS
ATTTGTAGGGCACAAGTTGT+GGG 0.551340 1:-78758696 MsG0180004486.01.T01:intron
CTTCCAGGTGCAGGTGATCA+CGG 0.551547 1:-78760826 MsG0180004486.01.T01:CDS
AATTACAGCACCAAGGGCAG+TGG 0.556761 1:-78757934 MsG0180004486.01.T01:intron
CGACTCGGTCTTCCAGGTGC+AGG 0.557067 1:-78760835 MsG0180004486.01.T01:CDS
TATATGAATGAGAAATTAGG+TGG 0.560071 1:-78757708 MsG0180004486.01.T01:three_prime_UTR
AAAGAGAAAATGACTAACGT+TGG 0.560324 1:-78760910 MsG0180004486.01.T01:exon
ACTCACTTAGCACGAGGAGG+AGG 0.560950 1:+78760634 None:intergenic
TTGTCGGGAAAATGAGGTCA+TGG 0.561671 1:+78761139 None:intergenic
TGTAATAATAAGAATGATTG+TGG 0.565492 1:+78761166 None:intergenic
AGTAGTGGATCCCTCCATTG+AGG 0.570074 1:+78757288 None:intergenic
TTTGTTAAGGTGAGCATGGA+TGG 0.571730 1:-78758570 MsG0180004486.01.T01:CDS
TTGGTGGGTAGCAAAGGAAA+AGG 0.578838 1:-78761234 MsG0180004486.01.T01:five_prime_UTR
GAAGCAGATAAGAGCACAAG+TGG 0.581742 1:-78758609 MsG0180004486.01.T01:CDS
TAACAACAAGCACATGGTAT+GGG 0.581887 1:+78757315 None:intergenic
ATTGTTAATTACAGCACCAA+GGG 0.584897 1:-78757940 MsG0180004486.01.T01:intron
AAAAGGGCTACTCACTCCCA+TGG 0.587502 1:+78758324 None:intergenic
TAAATGGAGCTGATTTGTTG+AGG 0.589212 1:-78757371 MsG0180004486.01.T01:three_prime_UTR
CCAACATATGAAGACAAAGA+TGG 0.591098 1:-78758372 MsG0180004486.01.T01:CDS
GGAGATGTTGACACGTGTAT+GGG 0.591297 1:+78761090 None:intergenic
AGGAAAAGGCAGGCAAGTAG+GGG 0.592809 1:-78761220 MsG0180004486.01.T01:five_prime_UTR
AAATATGATACGTATAAGGT+AGG 0.598381 1:+78757482 None:intergenic
GTAGGGCACAAGTTGTGGGA+TGG 0.599917 1:-78758692 MsG0180004486.01.T01:intron
TGCATCCCAAGGAAGCAAGT+TGG 0.600502 1:-78757842 MsG0180004486.01.T01:CDS
TATTTGGTGAAGGGGTTATG+GGG 0.602160 1:+78761054 None:intergenic
AGCATTTGTTAAGGTGAGCA+TGG 0.602441 1:-78758574 MsG0180004486.01.T01:CDS
TGGGTAGCAAAGGAAAAGGC+AGG 0.603737 1:-78761230 MsG0180004486.01.T01:five_prime_UTR
CCCACAATTGTCAATTGTGA+AGG 0.603780 1:+78758464 None:intergenic
AGTTGGCTCGAGTAAGGTCG+AGG 0.607074 1:-78757825 MsG0180004486.01.T01:CDS
TGGTGCACCATATCTACGTA+AGG 0.613344 1:-78758550 MsG0180004486.01.T01:CDS
GAACATATGAAATAAAGTAG+TGG 0.616500 1:+78757273 None:intergenic
GCAGATAAGAGCACAAGTGG+TGG 0.620410 1:-78758606 MsG0180004486.01.T01:CDS
TGTACTACCTAATACTACAA+AGG 0.625632 1:+78757419 None:intergenic
GCTTCTGTAGCTGAAAACAA+AGG 0.627006 1:-78760688 MsG0180004486.01.T01:CDS
ATAAGAGCACAAGTGGTGGT+GGG 0.631680 1:-78758602 MsG0180004486.01.T01:CDS
GTTGATAAATCTGCATCCCA+AGG 0.636946 1:-78757853 MsG0180004486.01.T01:CDS
GAGGAGACCGAGTTACGACT+CGG 0.639589 1:-78760850 MsG0180004486.01.T01:CDS
ATTATAAGTCAAGCACACGC+TGG 0.650658 1:+78757593 None:intergenic
TATTGTTAATTACAGCACCA+AGG 0.651227 1:-78757941 MsG0180004486.01.T01:intron
AGAGAAAATGACTAACGTTG+GGG 0.657706 1:-78760908 MsG0180004486.01.T01:exon
TTTCTGAAAGATCTAACTGG+TGG 0.659624 1:+78758669 None:intergenic
TTGTGGGTCCCAAGTTACCA+AGG 0.660834 1:-78758448 MsG0180004486.01.T01:CDS
TGCACCATATCTACGTAAGG+TGG 0.669757 1:-78758547 MsG0180004486.01.T01:CDS
TGCCTTTAGATCCATGAACA+TGG 0.675466 1:-78757342 MsG0180004486.01.T01:three_prime_UTR
GGGCCGTAACAACAAGCACA+TGG 0.689647 1:+78757309 None:intergenic
AAAACTCACTTAGCACGAGG+AGG 0.704960 1:+78760631 None:intergenic
CTTTAGATCCATGAACATGG+TGG 0.719280 1:-78757339 MsG0180004486.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTACAAAATAAAAATAA+TGG + Chr1:78760996-78761015 None:intergenic 10.0%
!! ATGTACAAAATAAAAATAAT+GGG + Chr1:78760995-78761014 None:intergenic 10.0%
!!! AAAGATTAGATTTTTTTTTA+AGG - Chr1:78758225-78758244 MsG0180004486.01.T01:intron 10.0%
!!! AAGATTAGATTTTTTTTTAA+GGG - Chr1:78758226-78758245 MsG0180004486.01.T01:intron 10.0%
!!! AATAATAGTATTATTTTAGT+TGG - Chr1:78759293-78759312 MsG0180004486.01.T01:intron 10.0%
!!! AATTTTATTCAAAAAATTTG+AGG + Chr1:78758970-78758989 None:intergenic 10.0%
!!! AATTTTTAAAAGAATAAACA+TGG - Chr1:78759123-78759142 MsG0180004486.01.T01:intron 10.0%
!!! ATTTTGAATAAGTTTTAATT+AGG - Chr1:78758299-78758318 MsG0180004486.01.T01:intron 10.0%
!!! CTTATAAAAATGTTTTAATT+AGG - Chr1:78758325-78758344 MsG0180004486.01.T01:intron 10.0%
!! AATTAACAATATTATATGAG+TGG + Chr1:78759402-78759421 None:intergenic 15.0%
!! ATATTATTGTTTAACAAAAC+AGG + Chr1:78758722-78758741 None:intergenic 15.0%
!! ATTAAAATTCATGTCAATAT+AGG + Chr1:78758996-78759015 None:intergenic 15.0%
!! ATTTGTGTTTAATTAGAAAT+TGG - Chr1:78759561-78759580 MsG0180004486.01.T01:intron 15.0%
!! TGAATAATTAAGTTATATCT+AGG - Chr1:78758032-78758051 MsG0180004486.01.T01:intron 15.0%
!! TGTACAAAATAAAAATAATG+GGG + Chr1:78760994-78761013 None:intergenic 15.0%
!! TTATATATGAATGAGAAATT+AGG - Chr1:78760812-78760831 MsG0180004486.01.T01:CDS 15.0%
!!! AAAAAAAATAAAGTATTGGA+TGG - Chr1:78759242-78759261 MsG0180004486.01.T01:intron 15.0%
!!! AAATTAGGTTTAAAACATTA+TGG - Chr1:78760536-78760555 MsG0180004486.01.T01:intron 15.0%
!!! AAGTTTAATGTTAGTTTTTA+TGG + Chr1:78758779-78758798 None:intergenic 15.0%
!!! AATTAACAATTCTTTTTAGA+GGG + Chr1:78757271-78757290 None:intergenic 15.0%
!!! TCTTTTTCTTTTTCTTTTTT+TGG + Chr1:78757569-78757588 None:intergenic 15.0%
!!! TGTAATAAAATTGATTTTGA+AGG + Chr1:78759064-78759083 None:intergenic 15.0%
!! AAAAAGAATTGTTAATTGGT+GGG - Chr1:78757274-78757293 MsG0180004486.01.T01:three_prime_UTR 20.0%
!! AAGGATAAATAAAGTTGAAA+AGG - Chr1:78759433-78759452 MsG0180004486.01.T01:intron 20.0%
!! AATTAAAACAATGAAATGTG+AGG + Chr1:78760230-78760249 None:intergenic 20.0%
!! ATAGTCATACTCTTATTAAT+TGG - Chr1:78760380-78760399 MsG0180004486.01.T01:intron 20.0%
!! ATCTGTTTAATAAGATTAGT+TGG - Chr1:78759765-78759784 MsG0180004486.01.T01:intron 20.0%
!! ATTTGTTTGTGAAAAACTAT+TGG - Chr1:78758499-78758518 MsG0180004486.01.T01:CDS 20.0%
!! CAATAAATATGATACGTATA+AGG + Chr1:78761048-78761067 None:intergenic 20.0%
!! CAATGAATATTGAATTTGTA+GGG - Chr1:78759814-78759833 MsG0180004486.01.T01:intron 20.0%
!! CATAATTTACTGTAGTATAA+AGG - Chr1:78759530-78759549 MsG0180004486.01.T01:intron 20.0%
!! GTAAATTATGCATGAATTAT+TGG + Chr1:78759520-78759539 None:intergenic 20.0%
!! GTACAAAATAAAAATAATGG+GGG + Chr1:78760993-78761012 None:intergenic 20.0%
!! TAAAAAGAATTGTTAATTGG+TGG - Chr1:78757273-78757292 MsG0180004486.01.T01:three_prime_UTR 20.0%
!! TCAAATGCATTTAACAAATT+AGG - Chr1:78760521-78760540 MsG0180004486.01.T01:intron 20.0%
!! TCAATGAATATTGAATTTGT+AGG - Chr1:78759813-78759832 MsG0180004486.01.T01:intron 20.0%
!! TCATAGAGTATAGATAATTA+AGG - Chr1:78758159-78758178 MsG0180004486.01.T01:intron 20.0%
!! TGTAATAATAAGAATGATTG+TGG + Chr1:78757360-78757379 None:intergenic 20.0%
!!! AAATTTTTATTGGTTTGAGT+TGG + Chr1:78760300-78760319 None:intergenic 20.0%
!!! AATGTTTTAATTAGGTTAGA+AGG - Chr1:78758333-78758352 MsG0180004486.01.T01:intron 20.0%
!!! ACTTTATTTATCCTTTTGTT+TGG + Chr1:78759428-78759447 None:intergenic 20.0%
!!! ATCTAATCTTTTCAATTCAA+TGG + Chr1:78758216-78758235 None:intergenic 20.0%
!!! CAATTAACAATTCTTTTTAG+AGG + Chr1:78757272-78757291 None:intergenic 20.0%
!!! CTTTATTTATCCTTTTGTTT+GGG + Chr1:78759427-78759446 None:intergenic 20.0%
!!! TACAAAATAAAAATAATGGG+GGG + Chr1:78760992-78761011 None:intergenic 20.0%
!!! TTTATTTATCCTTTTGTTTG+GGG + Chr1:78759426-78759445 None:intergenic 20.0%
!!! TTTTTTGAACATGACAATTT+TGG - Chr1:78758443-78758462 MsG0180004486.01.T01:CDS 20.0%
! AAATATGATACGTATAAGGT+AGG + Chr1:78761044-78761063 None:intergenic 25.0%
! AAATTAGGTGGAAATTCATT+AGG - Chr1:78760827-78760846 MsG0180004486.01.T01:CDS 25.0%
! AATTAGGTGGAAATTCATTA+GGG - Chr1:78760828-78760847 MsG0180004486.01.T01:CDS 25.0%
! AGACTATATAACAATGTGAT+AGG + Chr1:78759493-78759512 None:intergenic 25.0%
! ATGATCAAAATGTTATGAGT+CGG + Chr1:78760362-78760381 None:intergenic 25.0%
! GAACATATGAAATAAAGTAG+TGG + Chr1:78761253-78761272 None:intergenic 25.0%
! TATATGAATGAGAAATTAGG+TGG - Chr1:78760815-78760834 MsG0180004486.01.T01:CDS 25.0%
! TGAACATCAATGATCTTAAT+CGG + Chr1:78759641-78759660 None:intergenic 25.0%
! TTATCTATACTCTATGAACA+AGG + Chr1:78758156-78758175 None:intergenic 25.0%
!! AAATTGATTGACCTTTTGAA+CGG - Chr1:78760115-78760134 MsG0180004486.01.T01:intron 25.0%
!! AATTTTTCTTGCACATAATC+TGG + Chr1:78759209-78759228 None:intergenic 25.0%
!! ACGACGTAACAAATTTTTAT+TGG + Chr1:78760310-78760329 None:intergenic 25.0%
!! ATAATCTGGATGACATTTTT+AGG + Chr1:78759195-78759214 None:intergenic 25.0%
!! GTTTCTTGTTCCATAATTTT+TGG - Chr1:78758391-78758410 MsG0180004486.01.T01:CDS 25.0%
!!! AAAAATAAAGTATTGGATGG+TGG - Chr1:78759245-78759264 MsG0180004486.01.T01:intron 25.0%
!!! ACCCAGTTTTTGTTTTATAA+GGG - Chr1:78760881-78760900 MsG0180004486.01.T01:CDS 25.0%
!!! TTATTTATCCTTTTGTTTGG+GGG + Chr1:78759425-78759444 None:intergenic 25.0%
!!! TTTCCACAACTATTTTTAAC+AGG + Chr1:78757730-78757749 None:intergenic 25.0%
!!! TTTTAGTTGGATTTTTTCTG+CGG - Chr1:78759306-78759325 MsG0180004486.01.T01:intron 25.0%
!!! TTTTGATGGTTGGATTATAA+GGG + Chr1:78757413-78757432 None:intergenic 25.0%
AAAAATAGTTGTGGAAAGAG+AGG - Chr1:78757733-78757752 MsG0180004486.01.T01:three_prime_UTR 30.0%
AAAGAAAAAGACAAGACACT+TGG - Chr1:78759356-78759375 MsG0180004486.01.T01:intron 30.0%
AAAGAGAAAATGACTAACGT+TGG - Chr1:78757613-78757632 MsG0180004486.01.T01:three_prime_UTR 30.0%
AAGAGAAAATGACTAACGTT+GGG - Chr1:78757614-78757633 MsG0180004486.01.T01:three_prime_UTR 30.0%
ATTGTTAATTACAGCACCAA+GGG - Chr1:78760583-78760602 MsG0180004486.01.T01:intron 30.0%
CCCCTTATAAAACAAAAACT+GGG + Chr1:78760885-78760904 None:intergenic 30.0%
GAAATGTGAGGTGAAAAAAA+GGG + Chr1:78760218-78760237 None:intergenic 30.0%
GATGAAGCAGAATCATTTAT+AGG + Chr1:78757802-78757821 None:intergenic 30.0%
GCAAATTCTGCCAAAAATTA+TGG + Chr1:78758404-78758423 None:intergenic 30.0%
GGTAACTCTTGTACAATTTA+AGG + Chr1:78760003-78760022 None:intergenic 30.0%
GTTTGTGATTAAAGATCACA+CGG - Chr1:78758358-78758377 MsG0180004486.01.T01:CDS 30.0%
TATTGTTAATTACAGCACCA+AGG - Chr1:78760582-78760601 MsG0180004486.01.T01:intron 30.0%
TCACCTGTTAAAAATAGTTG+TGG - Chr1:78757724-78757743 MsG0180004486.01.T01:three_prime_UTR 30.0%
TCCCCTTATAAAACAAAAAC+TGG + Chr1:78760886-78760905 None:intergenic 30.0%
TGAAATGTGAGGTGAAAAAA+AGG + Chr1:78760219-78760238 None:intergenic 30.0%
TGATCAAAATGTTATGAGTC+GGG + Chr1:78760361-78760380 None:intergenic 30.0%
TGTACTACCTAATACTACAA+AGG + Chr1:78761107-78761126 None:intergenic 30.0%
! AATGATTGTGGTTTTTGTAG+TGG + Chr1:78757348-78757367 None:intergenic 30.0%
! ATTGGCAATTTGAGTTTGAT+TGG - Chr1:78758517-78758536 MsG0180004486.01.T01:CDS 30.0%
! GTACAGCTTGATAAATTTTG+AGG - Chr1:78757654-78757673 MsG0180004486.01.T01:three_prime_UTR 30.0%
! TTCTTTCTGAAAGATCTAAC+TGG + Chr1:78759860-78759879 None:intergenic 30.0%
! TTGGTGATATATTTGGTGAA+GGG + Chr1:78757481-78757500 None:intergenic 30.0%
! TTTGAACATGACAATTTTGG+TGG - Chr1:78758446-78758465 MsG0180004486.01.T01:CDS 30.0%
! TTTGGTGATATATTTGGTGA+AGG + Chr1:78757482-78757501 None:intergenic 30.0%
!! GTTTTGATGGTTGGATTATA+AGG + Chr1:78757414-78757433 None:intergenic 30.0%
!! TGGATTATAAGGGTATTTGT+CGG + Chr1:78757403-78757422 None:intergenic 30.0%
!! TTTATTGGTTTGAGTTGGTT+CGG + Chr1:78760295-78760314 None:intergenic 30.0%
!!! CCCAGTTTTTGTTTTATAAG+GGG - Chr1:78760882-78760901 MsG0180004486.01.T01:CDS 30.0%
!!! GACCCAGTTTTTGTTTTATA+AGG - Chr1:78760880-78760899 MsG0180004486.01.T01:CDS 30.0%
!!! GATGGTTTTGGTGATATATT+TGG + Chr1:78757488-78757507 None:intergenic 30.0%
!!! TTTTTTGTGCGTTTAGAAGA+TGG + Chr1:78757506-78757525 None:intergenic 30.0%
AAGATCACACGGTTACAATT+AGG - Chr1:78758369-78758388 MsG0180004486.01.T01:CDS 35.0%
ACAAATCCAGCAATGATAAC+TGG + Chr1:78760969-78760988 None:intergenic 35.0%
ACAACGTATGGTAATCAATC+AGG - Chr1:78759146-78759165 MsG0180004486.01.T01:intron 35.0%
AGAGAAAATGACTAACGTTG+GGG - Chr1:78757615-78757634 MsG0180004486.01.T01:three_prime_UTR 35.0%
AGGGGAATCTTATTAGAAAG+AGG - Chr1:78758116-78758135 MsG0180004486.01.T01:intron 35.0%
ATGAAGACAAAGATGGTGAT+TGG - Chr1:78760158-78760177 MsG0180004486.01.T01:intron 35.0%
ATGTTTCCAGTTATCATTGC+TGG - Chr1:78760960-78760979 MsG0180004486.01.T01:five_prime_UTR 35.0%
ATTTGTGTGCAACACTATTG+AGG - Chr1:78758096-78758115 MsG0180004486.01.T01:intron 35.0%
CAACGTATGGTAATCAATCA+GGG - Chr1:78759147-78759166 MsG0180004486.01.T01:intron 35.0%
CATAATCAGAACCGTTCAAA+AGG + Chr1:78760129-78760148 None:intergenic 35.0%
CATCAATGATCTTAATCGGA+TGG + Chr1:78759637-78759656 None:intergenic 35.0%
CCAACATATGAAGACAAAGA+TGG - Chr1:78760151-78760170 MsG0180004486.01.T01:intron 35.0%
CCATCTTTGTCTTCATATGT+TGG + Chr1:78760154-78760173 None:intergenic 35.0%
CCTTCACAATTGACAATTGT+GGG - Chr1:78760059-78760078 MsG0180004486.01.T01:intron 35.0%
GAATAAACATGGACAACGTA+TGG - Chr1:78759134-78759153 MsG0180004486.01.T01:intron 35.0%
GCAAGATCCTTTGTAGTATT+AGG - Chr1:78761097-78761116 MsG0180004486.01.T01:five_prime_UTR 35.0%
GCTTTCATTCATAAAGTCCT+TGG + Chr1:78760095-78760114 None:intergenic 35.0%
GTTACGTCGTGTAACAAATT+TGG - Chr1:78760320-78760339 MsG0180004486.01.T01:intron 35.0%
TAACAACAAGCACATGGTAT+GGG + Chr1:78761211-78761230 None:intergenic 35.0%
TCCTTCACAATTGACAATTG+TGG - Chr1:78760058-78760077 MsG0180004486.01.T01:intron 35.0%
TGTTAATTCCCCCAAACAAA+AGG - Chr1:78759414-78759433 MsG0180004486.01.T01:intron 35.0%
TTTGTGTGCAACACTATTGA+GGG - Chr1:78758097-78758116 MsG0180004486.01.T01:intron 35.0%
! ATATTTGGTGAAGGGGTTAT+GGG + Chr1:78757473-78757492 None:intergenic 35.0%
! ATTTTTGTCGGAACACAACA+AGG + Chr1:78760641-78760660 None:intergenic 35.0%
! CATAAAGTCCTTGGTAACTT+GGG + Chr1:78760086-78760105 None:intergenic 35.0%
! CTTGTCTGTCAAGTTGTAAA+TGG - Chr1:78761136-78761155 MsG0180004486.01.T01:five_prime_UTR 35.0%
! TATATTTGGTGAAGGGGTTA+TGG + Chr1:78757474-78757493 None:intergenic 35.0%
! TCATAAAGTCCTTGGTAACT+TGG + Chr1:78760087-78760106 None:intergenic 35.0%
! TGGTGATATATTTGGTGAAG+GGG + Chr1:78757480-78757499 None:intergenic 35.0%
! TTTCTGAAAGATCTAACTGG+TGG + Chr1:78759857-78759876 None:intergenic 35.0%
!! AACCAGAAGTGGATTTTTGT+CGG + Chr1:78760653-78760672 None:intergenic 35.0%
!! ATACCATGTGCTTGTTGTTA+CGG - Chr1:78761211-78761230 MsG0180004486.01.T01:five_prime_UTR 35.0%
!! GGATTATAAGGGTATTTGTC+GGG + Chr1:78757402-78757421 None:intergenic 35.0%
!! TAAATGGAGCTGATTTGTTG+AGG - Chr1:78761152-78761171 MsG0180004486.01.T01:five_prime_UTR 35.0%
!! TTGTAGTGGACATACTAGTT+TGG + Chr1:78757334-78757353 None:intergenic 35.0%
!!! GTTTTGTTTGAGACTGAGAT+AGG - Chr1:78758054-78758073 MsG0180004486.01.T01:intron 35.0%
AAGCGTCTTCGCATAATGAA+AGG - Chr1:78760447-78760466 MsG0180004486.01.T01:intron 40.0%
AATTTGTAGGGCACAAGTTG+TGG - Chr1:78759826-78759845 MsG0180004486.01.T01:intron 40.0%
AGAAAAACTCACTTAGCACG+AGG + Chr1:78757898-78757917 None:intergenic 40.0%
AGTAAGGTCGAGGCTAATAT+AGG - Chr1:78760708-78760727 MsG0180004486.01.T01:CDS 40.0%
ATTATAAGTCAAGCACACGC+TGG + Chr1:78760933-78760952 None:intergenic 40.0%
ATTTGTAGGGCACAAGTTGT+GGG - Chr1:78759827-78759846 MsG0180004486.01.T01:intron 40.0%
CACCATGTTCATGGATCTAA+AGG + Chr1:78761186-78761205 None:intergenic 40.0%
CCCACAATTGTCAATTGTGA+AGG + Chr1:78760062-78760081 None:intergenic 40.0%
CTTTAGATCCATGAACATGG+TGG - Chr1:78761184-78761203 MsG0180004486.01.T01:five_prime_UTR 40.0%
GCAGATTTATCAACCAGAAG+TGG + Chr1:78760664-78760683 None:intergenic 40.0%
GCTTCTGTAGCTGAAAACAA+AGG - Chr1:78757835-78757854 MsG0180004486.01.T01:CDS 40.0%
GTAACAACAAGCACATGGTA+TGG + Chr1:78761212-78761231 None:intergenic 40.0%
TATGGTAATCAATCAGGGCA+TGG - Chr1:78759152-78759171 MsG0180004486.01.T01:intron 40.0%
TCAACGACGATAGAGAATCA+TGG - Chr1:78759691-78759710 MsG0180004486.01.T01:intron 40.0%
TGCCTTTAGATCCATGAACA+TGG - Chr1:78761181-78761200 MsG0180004486.01.T01:five_prime_UTR 40.0%
TGTCAACATCTCCATCCATA+TGG - Chr1:78757443-78757462 MsG0180004486.01.T01:three_prime_UTR 40.0%
TTCCGACAAAAATCCACTTC+TGG - Chr1:78760648-78760667 MsG0180004486.01.T01:CDS 40.0%
TTGTGTGCAACACTATTGAG+GGG - Chr1:78758098-78758117 MsG0180004486.01.T01:intron 40.0%
TTTGTTAAGGTGAGCATGGA+TGG - Chr1:78759953-78759972 MsG0180004486.01.T01:intron 40.0%
! AGCATTTGTTAAGGTGAGCA+TGG - Chr1:78759949-78759968 MsG0180004486.01.T01:intron 40.0%
! GTGCGTTTAGAAGATGGTTT+TGG + Chr1:78757500-78757519 None:intergenic 40.0%
! GTTGATAAATCTGCATCCCA+AGG - Chr1:78760670-78760689 MsG0180004486.01.T01:CDS 40.0%
! TATTTGGTGAAGGGGTTATG+GGG + Chr1:78757472-78757491 None:intergenic 40.0%
! TGGGAATGGAGCATTTGTTA+AGG - Chr1:78759940-78759959 MsG0180004486.01.T01:intron 40.0%
! TGTTAATTGGTGGGTAGCAA+AGG - Chr1:78757283-78757302 MsG0180004486.01.T01:three_prime_UTR 40.0%
!! TGTTATGAGTCGGGTTGAAT+TGG + Chr1:78760352-78760371 None:intergenic 40.0%
!!! GATTTTTTCTGCGGATAGCA+TGG - Chr1:78759315-78759334 MsG0180004486.01.T01:intron 40.0%
AAAACTCACTTAGCACGAGG+AGG + Chr1:78757895-78757914 None:intergenic 45.0%
AAAGGAAAAGGCAGGCAAGT+AGG - Chr1:78757301-78757320 MsG0180004486.01.T01:three_prime_UTR 45.0%
AAGGAAAAGGCAGGCAAGTA+GGG - Chr1:78757302-78757321 MsG0180004486.01.T01:three_prime_UTR 45.0%
AGGTCCACCTTACGTAGATA+TGG + Chr1:78759983-78760002 None:intergenic 45.0%
ATGAAAGGTTCCGAGGCAAT+TGG - Chr1:78760462-78760481 MsG0180004486.01.T01:intron 45.0%
GATGGTGATTGGATGCTTGT+TGG - Chr1:78760169-78760188 MsG0180004486.01.T01:intron 45.0%
GCATAAATTCGTGCAGTCGA+TGG - Chr1:78759730-78759749 MsG0180004486.01.T01:intron 45.0%
GGAGATGTTGACACGTGTAT+GGG + Chr1:78757436-78757455 None:intergenic 45.0%
GGGTATTTGTCGGGAAAATG+AGG + Chr1:78757393-78757412 None:intergenic 45.0%
TCGCATAATGAAAGGTTCCG+AGG - Chr1:78760455-78760474 MsG0180004486.01.T01:intron 45.0%
TGAAAGGTTCCGAGGCAATT+GGG - Chr1:78760463-78760482 MsG0180004486.01.T01:intron 45.0%
TGCACCATATCTACGTAAGG+TGG - Chr1:78759976-78759995 MsG0180004486.01.T01:intron 45.0%
TGGAGATGTTGACACGTGTA+TGG + Chr1:78757437-78757456 None:intergenic 45.0%
TGGTGCACCATATCTACGTA+AGG - Chr1:78759973-78759992 MsG0180004486.01.T01:intron 45.0%
TTATGGGGGAACCATATGGA+TGG + Chr1:78757457-78757476 None:intergenic 45.0%
TTGTCGGGAAAATGAGGTCA+TGG + Chr1:78757387-78757406 None:intergenic 45.0%
TTTACCTAGCCCAATTGCCT+CGG + Chr1:78760475-78760494 None:intergenic 45.0%
! ATAAGAGCACAAGTGGTGGT+GGG - Chr1:78759921-78759940 MsG0180004486.01.T01:intron 45.0%
! ATTTGGTGAAGGGGTTATGG+GGG + Chr1:78757471-78757490 None:intergenic 45.0%
! GAAGCAGATAAGAGCACAAG+TGG - Chr1:78759914-78759933 MsG0180004486.01.T01:intron 45.0%
! TTGCATTTTTCCACTGCCCT+TGG + Chr1:78760602-78760621 None:intergenic 45.0%
! TTGGTGGGTAGCAAAGGAAA+AGG - Chr1:78757289-78757308 MsG0180004486.01.T01:three_prime_UTR 45.0%
! TTTTCTGCGGATAGCATGGT+TGG - Chr1:78759319-78759338 MsG0180004486.01.T01:intron 45.0%
!! AAGTATTGGATGGTGGCTGA+AGG - Chr1:78759252-78759271 MsG0180004486.01.T01:intron 45.0%
!! CGTGTATGGGTTTTGATGGT+TGG + Chr1:78757423-78757442 None:intergenic 45.0%
!! GACACGTGTATGGGTTTTGA+TGG + Chr1:78757427-78757446 None:intergenic 45.0%
!! GCTTGTTGGTGATGTTCCAT+GGG - Chr1:78760183-78760202 MsG0180004486.01.T01:intron 45.0%
!! GTTGGTTCGGTTCAGATCAT+CGG + Chr1:78760282-78760301 None:intergenic 45.0%
!! TGCTTGTTGGTGATGTTCCA+TGG - Chr1:78760182-78760201 MsG0180004486.01.T01:intron 45.0%
!! AAATAAAAAAAATAAAGTAT+TGG - Chr1:78759238-78759257 MsG0180004486.01.T01:intron 5.0%
AAAAGGGCTACTCACTCCCA+TGG + Chr1:78760202-78760221 None:intergenic 50.0%
AATCAATCAGGGCATGGTGG+AGG - Chr1:78759158-78759177 MsG0180004486.01.T01:intron 50.0%
AATTACAGCACCAAGGGCAG+TGG - Chr1:78760589-78760608 MsG0180004486.01.T01:intron 50.0%
AGGAAAAGGCAGGCAAGTAG+GGG - Chr1:78757303-78757322 MsG0180004486.01.T01:three_prime_UTR 50.0%
GGTAATCAATCAGGGCATGG+TGG - Chr1:78759155-78759174 MsG0180004486.01.T01:intron 50.0%
GTATGGGTCCACCATGTTCA+TGG + Chr1:78761195-78761214 None:intergenic 50.0%
GTGACACGCACACAAGACAA+GGG + Chr1:78759471-78759490 None:intergenic 50.0%
TGAATGCGTGCAGTCGTTGA+CGG + Chr1:78759595-78759614 None:intergenic 50.0%
TGCATCCCAAGGAAGCAAGT+TGG - Chr1:78760681-78760700 MsG0180004486.01.T01:CDS 50.0%
TGGAAGACCGAGTCGTAACT+CGG + Chr1:78757683-78757702 None:intergenic 50.0%
TGGGTAGCAAAGGAAAAGGC+AGG - Chr1:78757293-78757312 MsG0180004486.01.T01:three_prime_UTR 50.0%
TGGTGGCTGAAGGAATAGGT+TGG - Chr1:78759262-78759281 MsG0180004486.01.T01:intron 50.0%
TTGTGGGTCCCAAGTTACCA+AGG - Chr1:78760075-78760094 MsG0180004486.01.T01:intron 50.0%
TTGTTACGGCCCTCAATGGA+GGG - Chr1:78761225-78761244 MsG0180004486.01.T01:five_prime_UTR 50.0%
! CGGATAGCATGGTTGGTTGT+CGG - Chr1:78759326-78759345 MsG0180004486.01.T01:intron 50.0%
! GATAAGAGCACAAGTGGTGG+TGG - Chr1:78759920-78759939 MsG0180004486.01.T01:intron 50.0%
! GCAGATAAGAGCACAAGTGG+TGG - Chr1:78759917-78759936 MsG0180004486.01.T01:intron 50.0%
! GGATAGCATGGTTGGTTGTC+GGG - Chr1:78759327-78759346 MsG0180004486.01.T01:intron 50.0%
! TCGAGCCAACTTGCTTCCTT+GGG + Chr1:78760689-78760708 None:intergenic 50.0%
! TGGATGGTGGCTGAAGGAAT+AGG - Chr1:78759258-78759277 MsG0180004486.01.T01:intron 50.0%
!! AGTAGTGGATCCCTCCATTG+AGG + Chr1:78761238-78761257 None:intergenic 50.0%
!! CTTGTTGTTACGGCCCTCAA+TGG - Chr1:78761221-78761240 MsG0180004486.01.T01:five_prime_UTR 50.0%
!! GAAGCAAGTTGGCTCGAGTA+AGG - Chr1:78760692-78760711 MsG0180004486.01.T01:CDS 50.0%
!! GTAGTGGATCCCTCCATTGA+GGG + Chr1:78761237-78761256 None:intergenic 50.0%
ACTCACTTAGCACGAGGAGG+AGG + Chr1:78757892-78757911 None:intergenic 55.0%
CTTCCAGGTGCAGGTGATCA+CGG - Chr1:78757697-78757716 MsG0180004486.01.T01:three_prime_UTR 55.0%
GAGGAGACCGAGTTACGACT+CGG - Chr1:78757673-78757692 MsG0180004486.01.T01:three_prime_UTR 55.0%
GGGCCGTAACAACAAGCACA+TGG + Chr1:78761217-78761236 None:intergenic 55.0%
GGGGTTATGGGGGAACCATA+TGG + Chr1:78757461-78757480 None:intergenic 55.0%
GGTGACACGCACACAAGACA+AGG + Chr1:78759472-78759491 None:intergenic 55.0%
GTAGGGCACAAGTTGTGGGA+TGG - Chr1:78759831-78759850 MsG0180004486.01.T01:intron 55.0%
GTTGTTACGGCCCTCAATGG+AGG - Chr1:78761224-78761243 MsG0180004486.01.T01:five_prime_UTR 55.0%
! CTCGAGCCAACTTGCTTCCT+TGG + Chr1:78760690-78760709 None:intergenic 55.0%
!! AGCACAAGTGGTGGTGGGAA+TGG - Chr1:78759926-78759945 MsG0180004486.01.T01:intron 55.0%
!! AGTTGGCTCGAGTAAGGTCG+AGG - Chr1:78760698-78760717 MsG0180004486.01.T01:CDS 55.0%
!! GAGTTACGACTCGGTCTTCC+AGG - Chr1:78757682-78757701 MsG0180004486.01.T01:three_prime_UTR 55.0%
AAAGGCAGGCAAGTAGGGGC+AGG - Chr1:78757307-78757326 MsG0180004486.01.T01:three_prime_UTR 60.0%
CCAAGAGCTGTCAGATGCGC+TGG - Chr1:78760021-78760040 MsG0180004486.01.T01:intron 60.0%
CCAGCGCATCTGACAGCTCT+TGG + Chr1:78760024-78760043 None:intergenic 60.0%
GGTTCCGAGGCAATTGGGCT+AGG - Chr1:78760468-78760487 MsG0180004486.01.T01:intron 60.0%
TCTCCGTGATCACCTGCACC+TGG + Chr1:78757703-78757722 None:intergenic 60.0%
! GCACACAAGACAAGGGCGTG+TGG + Chr1:78759464-78759483 None:intergenic 60.0%
!! CGACTCGGTCTTCCAGGTGC+AGG - Chr1:78757688-78757707 MsG0180004486.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78757271 78761274 78757271 ID=MsG0180004486.01;Name=MsG0180004486.01
Chr1 mRNA 78757271 78761274 78757271 ID=MsG0180004486.01.T01;Parent=MsG0180004486.01;Name=MsG0180004486.01.T01;_AED=0.49;_eAED=0.49;_QI=351|0.5|1|1|0.5|0.66|3|545|262
Chr1 exon 78757271 78757948 78757271 ID=MsG0180004486.01.T01:exon:45489;Parent=MsG0180004486.01.T01
Chr1 exon 78758339 78758710 78758339 ID=MsG0180004486.01.T01:exon:45488;Parent=MsG0180004486.01.T01
Chr1 exon 78760640 78761274 78760640 ID=MsG0180004486.01.T01:exon:45487;Parent=MsG0180004486.01.T01
Chr1 five_prime_UTR 78760924 78761274 78760924 ID=MsG0180004486.01.T01:five_prime_utr;Parent=MsG0180004486.01.T01
Chr1 CDS 78760640 78760923 78760640 ID=MsG0180004486.01.T01:cds;Parent=MsG0180004486.01.T01
Chr1 CDS 78758339 78758710 78758339 ID=MsG0180004486.01.T01:cds;Parent=MsG0180004486.01.T01
Chr1 CDS 78757816 78757948 78757816 ID=MsG0180004486.01.T01:cds;Parent=MsG0180004486.01.T01
Chr1 three_prime_UTR 78757271 78757815 78757271 ID=MsG0180004486.01.T01:three_prime_utr;Parent=MsG0180004486.01.T01
Gene Sequence

>MsG0180004486.01.T01

ATGACTAACGTTGGGGATGCAGAGAGAGACAAGTACAGCTTGATAAATTTTGAGGAGACCGAGTTACGACTCGGTCTTCCAGGTGCAGGTGATCACGGAGAATCACCTGTTAAAAATAGTTGTGGAAAGAGAGGTTTCTCAGAAACTGCTAATGTTGATTTGAAGCTTAATCTTTCTCCTATAAATGATTCTGCTTCATCTTCTTCAACTATAGCTTCTGTAGCTGAAAACAAAGGCAAAGACACAACAACTTCTGCTACTGTTGCTCCTCCTCCTCGTGCTAAGGCACAAGTTGTGGGATGGCCACCAGTTAGATCTTTCAGAAAGAACATAGTAAATGTTCAAAAGAGCAATAATGAATCAGAAGCAGATAAGAGCACAAGTGGTGGTGGGAATGGAGCATTTGTTAAGGTGAGCATGGATGGTGCACCATATCTACGTAAGGTGGACCTTAAATTGTACAAGAGTTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCCTTCACAATTGACAATTGTGGGTCCCAAGTTACCAAGGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGACACCAAGGGCAGTGGAAAAATGCAAGAACAGAAGCTGAAATCCTTGTTGTGTTCCGACAAAAATCCACTTCTGGTTGATAAATCTGCATCCCAAGGAAGCAAGTTGGCTCGAGTAAGGTCGAGGCTAATATAG

Protein sequence

>MsG0180004486.01.T01

MTNVGDAERDKYSLINFEETELRLGLPGAGDHGESPVKNSCGKRGFSETANVDLKLNLSPINDSASSSSTIASVAENKGKDTTTSATVAPPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEADKSTSGGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWDTKGSGKMQEQKLKSLLCSDKNPLLVDKSASQGSKLARVRSRLI*