Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007208.01.T01 | XP_013462764.1 | 95.098 | 102 | 5 | 0 | 1 | 102 | 1 | 102 | 1.64E-63 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007208.01.T01 | A0A072V456 | 95.098 | 102 | 5 | 0 | 1 | 102 | 1 | 102 | 7.84e-64 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001311.01 | MsG0280007208.01 | 0.852708 | 3.867150e-61 | 8.150911e-58 |
| MsG0180002992.01 | MsG0280007208.01 | 0.818302 | 2.104547e-52 | 1.569394e-49 |
| MsG0180004399.01 | MsG0280007208.01 | 0.824311 | 8.648140e-54 | 7.631555e-51 |
| MsG0180004486.01 | MsG0280007208.01 | 0.867281 | 1.536540e-65 | 5.334398e-62 |
| MsG0180005443.01 | MsG0280007208.01 | 0.806931 | 6.473403e-50 | 3.558365e-47 |
| MsG0180005493.01 | MsG0280007208.01 | 0.835653 | 1.480270e-56 | 1.821814e-53 |
| MsG0180005507.01 | MsG0280007208.01 | 0.809108 | 2.226586e-50 | 1.295887e-47 |
| MsG0180006025.01 | MsG0280007208.01 | 0.835405 | 1.710124e-56 | 2.089270e-53 |
| MsG0180006061.01 | MsG0280007208.01 | 0.803504 | 3.377371e-49 | 1.700149e-46 |
| MsG0280006692.01 | MsG0280007208.01 | 0.854060 | 1.582383e-61 | 3.490986e-58 |
| MsG0280007208.01 | MsG0280007484.01 | 0.826887 | 2.119176e-54 | 2.013191e-51 |
| MsG0280007208.01 | MsG0280009417.01 | 0.813052 | 3.110677e-51 | 2.010134e-48 |
| MsG0280007208.01 | MsG0380015289.01 | 0.842861 | 1.996777e-58 | 3.067680e-55 |
| MsG0280007208.01 | MsG0380015374.01 | 0.813470 | 2.518550e-51 | 1.646228e-48 |
| MsG0280007208.01 | MsG0380015702.01 | 0.833221 | 6.039421e-56 | 6.910247e-53 |
| MsG0280007208.01 | MsG0380015893.01 | 0.823249 | 1.533467e-53 | 1.313255e-50 |
| MsG0280007208.01 | MsG0380017055.01 | 0.814517 | 1.479845e-51 | 9.951284e-49 |
| MsG0280007208.01 | MsG0480020719.01 | 0.814110 | 1.820698e-51 | 1.210831e-48 |
| MsG0280007208.01 | MsG0480021592.01 | 0.810464 | 1.137869e-50 | 6.863584e-48 |
| MsG0280007208.01 | MsG0480021870.01 | 0.814378 | 1.588015e-51 | 1.063852e-48 |
| MsG0280007208.01 | MsG0480021900.01 | 0.818389 | 2.011312e-52 | 1.503582e-49 |
| MsG0280007208.01 | MsG0480022228.01 | 0.801391 | 9.206022e-49 | 4.391180e-46 |
| MsG0280007208.01 | MsG0480023377.01 | 0.842744 | 2.144707e-58 | 3.282745e-55 |
| MsG0280007208.01 | MsG0480023451.01 | 0.805395 | 1.363030e-49 | 7.202995e-47 |
| MsG0280007208.01 | MsG0480023670.01 | 0.834531 | 2.840148e-56 | 3.380084e-53 |
| MsG0280007208.01 | MsG0580024157.01 | 0.811557 | 6.595324e-51 | 4.095420e-48 |
| MsG0280007208.01 | MsG0580025206.01 | 0.825763 | 3.926690e-54 | 3.612437e-51 |
| MsG0280007208.01 | MsG0580028459.01 | 0.814939 | 1.193526e-51 | 8.117052e-49 |
| MsG0280007208.01 | MsG0580029327.01 | 0.805931 | 1.051657e-49 | 5.634870e-47 |
| MsG0280007208.01 | MsG0580029592.01 | 0.843414 | 1.422157e-58 | 2.223529e-55 |
| MsG0280007208.01 | MsG0580029919.01 | 0.808089 | 3.676139e-50 | 2.082719e-47 |
| MsG0280007208.01 | MsG0680033926.01 | 0.819572 | 1.082460e-52 | 8.361452e-50 |
| MsG0280007208.01 | MsG0780036630.01 | 0.821510 | 3.886320e-53 | 3.167959e-50 |
| MsG0280007208.01 | MsG0780036633.01 | 0.802713 | 4.923627e-49 | 2.428825e-46 |
| MsG0280007208.01 | MsG0780036635.01 | 0.839141 | 1.891640e-57 | 2.588488e-54 |
| MsG0280007208.01 | MsG0780038644.01 | 0.825654 | 4.165470e-54 | 3.820310e-51 |
| MsG0280007208.01 | MsG0780040190.01 | 0.804032 | 2.624262e-49 | 1.339068e-46 |
| MsG0280007208.01 | MsG0780040591.01 | 0.820805 | 5.648424e-53 | 4.515282e-50 |
| MsG0280007208.01 | MsG0780040757.01 | 0.800711 | 1.267951e-48 | 5.944660e-46 |
| MsG0280007208.01 | MsG0880043090.01 | 0.805521 | 1.282619e-49 | 6.799911e-47 |
| MsG0280007208.01 | MsG0880043194.01 | 0.822379 | 2.445311e-53 | 2.043403e-50 |
| MsG0280007208.01 | MsG0880043489.01 | 0.823894 | 1.083412e-53 | 9.449837e-51 |
| MsG0280007208.01 | MsG0880045897.01 | -0.807400 | 5.149724e-50 | 2.865535e-47 |
| MsG0280007208.01 | MsG0880046560.01 | 0.823710 | 1.196413e-53 | 1.038269e-50 |
| MsG0280007208.01 | MsG0880046809.01 | 0.821381 | 4.161053e-53 | 3.379795e-50 |
| MsG0280007208.01 | MsG0880047285.01 | -0.826600 | 2.481572e-54 | 2.337836e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007208.01.T01 | MTR_2g022610 | 95.098 | 102 | 5 | 0 | 1 | 102 | 1 | 102 | 1.99e-67 | 198 |
| MsG0280007208.01.T01 | MTR_4g131720 | 70.588 | 102 | 29 | 1 | 1 | 101 | 1 | 102 | 3.07e-49 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280007208.01.T01 | AT3G06070 | 39.560 | 91 | 50 | 3 | 1 | 86 | 1 | 91 | 9.81e-15 | 65.9 |
| MsG0280007208.01.T01 | AT5G19190 | 38.095 | 105 | 57 | 4 | 1 | 101 | 1 | 101 | 1.74e-14 | 65.1 |
Find 58 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGAAACTAAATACAATTT+TGG | 0.181446 | 2:+11948297 | MsG0280007208.01.T01:five_prime_UTR |
| CTTCATCTTCATCCATTATT+AGG | 0.195790 | 2:-11948416 | None:intergenic |
| AACTAAACTTCCACAAATTA+TGG | 0.212788 | 2:+11948231 | MsG0280007208.01.T01:five_prime_UTR |
| TCCTTTCTGTACCTCCTTCC+TGG | 0.231431 | 2:-11948918 | None:intergenic |
| ATTAGGTGTTATATAATATA+TGG | 0.247342 | 2:-11949211 | None:intergenic |
| TTAATATCATTAACAGAAAA+AGG | 0.277524 | 2:-11949333 | None:intergenic |
| TAATTAATTCTTTAGCCTTT+AGG | 0.283220 | 2:+11949123 | MsG0280007208.01.T01:three_prime_UTR |
| ATGGGTGAGTTAAGACATAT+TGG | 0.306508 | 2:-11948186 | None:intergenic |
| TATACATGATGACTAATATT+AGG | 0.313703 | 2:-11949228 | None:intergenic |
| AGAAATTGCTCTCCTAATAA+TGG | 0.320698 | 2:+11948404 | MsG0280007208.01.T01:CDS |
| GAGTGAGTACACTTATTAAT+TGG | 0.322435 | 2:-11947993 | None:intergenic |
| TCAACCTGCAAACTCTCTTC+AGG | 0.344380 | 2:+11948452 | MsG0280007208.01.T01:CDS |
| AATTAACATGGAGGTTGCTT+TGG | 0.348717 | 2:+11948344 | MsG0280007208.01.T01:exon |
| CTTCTTGTGTCCATAATTTG+TGG | 0.353670 | 2:-11948241 | None:intergenic |
| TTCCTGGTTGTGTTGCTTGT+GGG | 0.361313 | 2:-11948902 | None:intergenic |
| CATGGAGGTTGCTTTGGAAA+TGG | 0.372075 | 2:+11948350 | MsG0280007208.01.T01:exon |
| GTTTGATAGAATTCTGTGTT+AGG | 0.383033 | 2:-11949004 | None:intergenic |
| GCCTTTAGGCAATAATTGTA+TGG | 0.399792 | 2:+11949137 | MsG0280007208.01.T01:three_prime_UTR |
| AGAAGAGAAAGCAAAGGAAC+AGG | 0.411669 | 2:+11948870 | MsG0280007208.01.T01:CDS |
| CTTCCTGGTTGTGTTGCTTG+TGG | 0.428280 | 2:-11948903 | None:intergenic |
| AGAACCTGAAGAGAGTTTGC+AGG | 0.436707 | 2:-11948456 | None:intergenic |
| AGTGGAGGTTGCAAAACCTT+TGG | 0.437819 | 2:-11949262 | None:intergenic |
| TGGGTGGTCATGTGGGTTAG+TGG | 0.454647 | 2:-11948166 | None:intergenic |
| TAATATTAGTCATCATGTAT+AGG | 0.461723 | 2:+11949230 | MsG0280007208.01.T01:three_prime_UTR |
| AAATCACACAGCTTTATAGA+AGG | 0.463158 | 2:-11949053 | None:intergenic |
| AATATTTCCATGATACTTGT+GGG | 0.469911 | 2:+11948108 | MsG0280007208.01.T01:five_prime_UTR |
| GGGTGGTCATGTGGGTTAGT+GGG | 0.473239 | 2:-11948165 | None:intergenic |
| AATTCTATCAAACAGTGAAA+TGG | 0.476428 | 2:+11949014 | MsG0280007208.01.T01:three_prime_UTR |
| CACAGTTGCTTAGCTAGCTA+TGG | 0.483960 | 2:-11948133 | None:intergenic |
| TAGCTAAGCAACTGTGACCA+TGG | 0.485012 | 2:+11948140 | MsG0280007208.01.T01:five_prime_UTR |
| GACATATTGGGTGGTCATGT+GGG | 0.515223 | 2:-11948173 | None:intergenic |
| GCCATACAATTATTGCCTAA+AGG | 0.516035 | 2:-11949138 | None:intergenic |
| TAATATTTCCATGATACTTG+TGG | 0.519213 | 2:+11948107 | MsG0280007208.01.T01:five_prime_UTR |
| TATAAAGGTGGATATGTACA+TGG | 0.524484 | 2:+11949183 | MsG0280007208.01.T01:three_prime_UTR |
| TGGGTGAGTTAAGACATATT+GGG | 0.527268 | 2:-11948185 | None:intergenic |
| AAGAAATCAAACTGTGGAGG+AGG | 0.531737 | 2:-11948828 | None:intergenic |
| AGACATATTGGGTGGTCATG+TGG | 0.535069 | 2:-11948174 | None:intergenic |
| TATGGACCCCACAAGTATCA+TGG | 0.544735 | 2:-11948115 | None:intergenic |
| AGCTAAGCAACTGTGACCAT+GGG | 0.549449 | 2:+11948141 | MsG0280007208.01.T01:five_prime_UTR |
| ATGTGGGTTAGTGGGACCCA+TGG | 0.555372 | 2:-11948157 | None:intergenic |
| ACCAGGAAGGAGGTACAGAA+AGG | 0.556139 | 2:+11948917 | MsG0280007208.01.T01:CDS |
| ATCCCACAAGCAACACAACC+AGG | 0.573882 | 2:+11948900 | MsG0280007208.01.T01:CDS |
| GTATAGGAGGATTCAACCAA+AGG | 0.585124 | 2:+11949246 | MsG0280007208.01.T01:three_prime_UTR |
| GATCAGATATCATCTGGACA+TGG | 0.589069 | 2:+11948035 | MsG0280007208.01.T01:five_prime_UTR |
| TATTAGTCATCATGTATAGG+AGG | 0.591401 | 2:+11949233 | MsG0280007208.01.T01:three_prime_UTR |
| CACAAGCAACACAACCAGGA+AGG | 0.608653 | 2:+11948904 | MsG0280007208.01.T01:CDS |
| TTGATTAGAAGAGAAAGCAA+AGG | 0.610534 | 2:+11948864 | MsG0280007208.01.T01:CDS |
| TTTGCAGGTTGAGAAGCAAG+TGG | 0.620205 | 2:-11948441 | None:intergenic |
| ATAAAGGTGGATATGTACAT+GGG | 0.623401 | 2:+11949184 | MsG0280007208.01.T01:three_prime_UTR |
| TAGAAGAAATCAAACTGTGG+AGG | 0.634181 | 2:-11948831 | None:intergenic |
| ATCAGATATCATCTGGACAT+GGG | 0.638660 | 2:+11948036 | MsG0280007208.01.T01:five_prime_UTR |
| AAGCAACACAACCAGGAAGG+AGG | 0.653987 | 2:+11948907 | MsG0280007208.01.T01:CDS |
| ATATTTCCATGATACTTGTG+GGG | 0.660564 | 2:+11948109 | MsG0280007208.01.T01:five_prime_UTR |
| TTTATATTGAATTAACATGG+AGG | 0.678774 | 2:+11948335 | MsG0280007208.01.T01:exon |
| AATGCTTGTCCACACAGTGG+AGG | 0.692722 | 2:-11949277 | None:intergenic |
| GTGAGTTAAGACATATTGGG+TGG | 0.706648 | 2:-11948182 | None:intergenic |
| CAAAATGCTTGTCCACACAG+TGG | 0.720567 | 2:-11949280 | None:intergenic |
| TCATAGAAGAAATCAAACTG+TGG | 0.762193 | 2:-11948834 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTCTATTTTATTATATAA+AGG | + | Chr2:11949168-11949187 | MsG0280007208.01.T01:three_prime_UTR | 10.0% |
| !!! | TTAGTTTTATATAAAGAAAA+AGG | - | Chr2:11948217-11948236 | None:intergenic | 10.0% |
| !! | TTAATATCATTAACAGAAAA+AGG | - | Chr2:11949336-11949355 | None:intergenic | 15.0% |
| !! | TTTATATAAAGAAAAAGGTA+AGG | - | Chr2:11948212-11948231 | None:intergenic | 15.0% |
| !!! | ATTAGGTGTTATATAATATA+TGG | - | Chr2:11949214-11949233 | None:intergenic | 15.0% |
| !!! | TCTATTTTATTATATAAAGG+TGG | + | Chr2:11949171-11949190 | MsG0280007208.01.T01:three_prime_UTR | 15.0% |
| !!! | TCTTTTATATTGAATTAACA+TGG | + | Chr2:11948332-11948351 | MsG0280007208.01.T01:exon | 15.0% |
| !!! | TCTTTTTAATCAATCAATTT+AGG | + | Chr2:11948083-11948102 | MsG0280007208.01.T01:five_prime_UTR | 15.0% |
| !! | AAAATGTCATAATTGAAACT+TGG | - | Chr2:11948571-11948590 | None:intergenic | 20.0% |
| !! | TAATATTAGTCATCATGTAT+AGG | + | Chr2:11949230-11949249 | MsG0280007208.01.T01:three_prime_UTR | 20.0% |
| !! | TATACATGATGACTAATATT+AGG | - | Chr2:11949231-11949250 | None:intergenic | 20.0% |
| !! | TATATTAGTATGTAACTATG+AGG | - | Chr2:11948516-11948535 | None:intergenic | 20.0% |
| !! | TTAAAGAATTTATTTGTGCA+TGG | + | Chr2:11948593-11948612 | MsG0280007208.01.T01:intron | 20.0% |
| !! | TTTATATTGAATTAACATGG+AGG | + | Chr2:11948335-11948354 | MsG0280007208.01.T01:exon | 20.0% |
| !!! | CTAGAAACTAAATACAATTT+TGG | + | Chr2:11948297-11948316 | MsG0280007208.01.T01:five_prime_UTR | 20.0% |
| !!! | TAATTAATTCTTTAGCCTTT+AGG | + | Chr2:11949123-11949142 | MsG0280007208.01.T01:three_prime_UTR | 20.0% |
| ! | AAAAAGATGTGAAAAAACAG+CGG | - | Chr2:11948070-11948089 | None:intergenic | 25.0% |
| ! | AACTAAACTTCCACAAATTA+TGG | + | Chr2:11948231-11948250 | MsG0280007208.01.T01:five_prime_UTR | 25.0% |
| ! | AATATTTCCATGATACTTGT+GGG | + | Chr2:11948108-11948127 | MsG0280007208.01.T01:five_prime_UTR | 25.0% |
| ! | AATTCTATCAAACAGTGAAA+TGG | + | Chr2:11949014-11949033 | MsG0280007208.01.T01:three_prime_UTR | 25.0% |
| ! | ATAAAGAAAAAGGTAAGGAT+GGG | - | Chr2:11948207-11948226 | None:intergenic | 25.0% |
| ! | TAATATTTCCATGATACTTG+TGG | + | Chr2:11948107-11948126 | MsG0280007208.01.T01:five_prime_UTR | 25.0% |
| ! | TATAAAGAAAAAGGTAAGGA+TGG | - | Chr2:11948208-11948227 | None:intergenic | 25.0% |
| ! | TATTTGCATATAGAGAAAGA+AGG | - | Chr2:11948721-11948740 | None:intergenic | 25.0% |
| AAAAGATGTGAAAAAACAGC+GGG | - | Chr2:11948069-11948088 | None:intergenic | 30.0% | |
| AGAAATTGCTCTCCTAATAA+TGG | + | Chr2:11948404-11948423 | MsG0280007208.01.T01:CDS | 30.0% | |
| ATAAAGGTGGATATGTACAT+GGG | + | Chr2:11949184-11949203 | MsG0280007208.01.T01:three_prime_UTR | 30.0% | |
| ATATTTCCATGATACTTGTG+GGG | + | Chr2:11948109-11948128 | MsG0280007208.01.T01:five_prime_UTR | 30.0% | |
| CATAATTGAAACTTGGAAGA+AGG | - | Chr2:11948564-11948583 | None:intergenic | 30.0% | |
| CTTCATCTTCATCCATTATT+AGG | - | Chr2:11948419-11948438 | None:intergenic | 30.0% | |
| GAGGTGCATGTATTTAATTA+AGG | - | Chr2:11948497-11948516 | None:intergenic | 30.0% | |
| GAGTGAGTACACTTATTAAT+TGG | - | Chr2:11947996-11948015 | None:intergenic | 30.0% | |
| GTGCATGTATTTAATTAAGG+AGG | - | Chr2:11948494-11948513 | None:intergenic | 30.0% | |
| GTTTGATAGAATTCTGTGTT+AGG | - | Chr2:11949007-11949026 | None:intergenic | 30.0% | |
| TATAAAGGTGGATATGTACA+TGG | + | Chr2:11949183-11949202 | MsG0280007208.01.T01:three_prime_UTR | 30.0% | |
| TATTAGTCATCATGTATAGG+AGG | + | Chr2:11949233-11949252 | MsG0280007208.01.T01:three_prime_UTR | 30.0% | |
| TCATAGAAGAAATCAAACTG+TGG | - | Chr2:11948837-11948856 | None:intergenic | 30.0% | |
| TTGATTAGAAGAGAAAGCAA+AGG | + | Chr2:11948864-11948883 | MsG0280007208.01.T01:CDS | 30.0% | |
| ! | AAATCACACAGCTTTATAGA+AGG | - | Chr2:11949056-11949075 | None:intergenic | 30.0% |
| ! | CTCTCTTGAGATTGAATTTT+TGG | + | Chr2:11948013-11948032 | MsG0280007208.01.T01:five_prime_UTR | 30.0% |
| ! | TTTTTGGATCAGATATCATC+TGG | + | Chr2:11948029-11948048 | MsG0280007208.01.T01:five_prime_UTR | 30.0% |
| AATTAACATGGAGGTTGCTT+TGG | + | Chr2:11948344-11948363 | MsG0280007208.01.T01:exon | 35.0% | |
| ATCAGATATCATCTGGACAT+GGG | + | Chr2:11948036-11948055 | MsG0280007208.01.T01:five_prime_UTR | 35.0% | |
| ATGGGTGAGTTAAGACATAT+TGG | - | Chr2:11948189-11948208 | None:intergenic | 35.0% | |
| CTTCTTGTGTCCATAATTTG+TGG | - | Chr2:11948244-11948263 | None:intergenic | 35.0% | |
| GCCATACAATTATTGCCTAA+AGG | - | Chr2:11949141-11949160 | None:intergenic | 35.0% | |
| GCCTTTAGGCAATAATTGTA+TGG | + | Chr2:11949137-11949156 | MsG0280007208.01.T01:three_prime_UTR | 35.0% | |
| TAGAAGAAATCAAACTGTGG+AGG | - | Chr2:11948834-11948853 | None:intergenic | 35.0% | |
| TGGGTGAGTTAAGACATATT+GGG | - | Chr2:11948188-11948207 | None:intergenic | 35.0% | |
| TTTATTTGTGCATGGCAGTT+CGG | + | Chr2:11948601-11948620 | MsG0280007208.01.T01:intron | 35.0% | |
| AAGAAATCAAACTGTGGAGG+AGG | - | Chr2:11948831-11948850 | None:intergenic | 40.0% | |
| AGAAGAGAAAGCAAAGGAAC+AGG | + | Chr2:11948870-11948889 | MsG0280007208.01.T01:CDS | 40.0% | |
| GATCAGATATCATCTGGACA+TGG | + | Chr2:11948035-11948054 | MsG0280007208.01.T01:five_prime_UTR | 40.0% | |
| GTATAGGAGGATTCAACCAA+AGG | + | Chr2:11949246-11949265 | MsG0280007208.01.T01:three_prime_UTR | 40.0% | |
| GTGAGTTAAGACATATTGGG+TGG | - | Chr2:11948185-11948204 | None:intergenic | 40.0% | |
| AGAACCTGAAGAGAGTTTGC+AGG | - | Chr2:11948459-11948478 | None:intergenic | 45.0% | |
| AGACATATTGGGTGGTCATG+TGG | - | Chr2:11948177-11948196 | None:intergenic | 45.0% | |
| AGCTAAGCAACTGTGACCAT+GGG | + | Chr2:11948141-11948160 | MsG0280007208.01.T01:five_prime_UTR | 45.0% | |
| AGTGGAGGTTGCAAAACCTT+TGG | - | Chr2:11949265-11949284 | None:intergenic | 45.0% | |
| CAAAATGCTTGTCCACACAG+TGG | - | Chr2:11949283-11949302 | None:intergenic | 45.0% | |
| CACAGTTGCTTAGCTAGCTA+TGG | - | Chr2:11948136-11948155 | None:intergenic | 45.0% | |
| GACATATTGGGTGGTCATGT+GGG | - | Chr2:11948176-11948195 | None:intergenic | 45.0% | |
| TAGCTAAGCAACTGTGACCA+TGG | + | Chr2:11948140-11948159 | MsG0280007208.01.T01:five_prime_UTR | 45.0% | |
| TATGGACCCCACAAGTATCA+TGG | - | Chr2:11948118-11948137 | None:intergenic | 45.0% | |
| TCAACCTGCAAACTCTCTTC+AGG | + | Chr2:11948452-11948471 | MsG0280007208.01.T01:CDS | 45.0% | |
| ! | CTGTGTGGACAAGCATTTTG+TGG | + | Chr2:11949283-11949302 | MsG0280007208.01.T01:three_prime_UTR | 45.0% |
| ! | TTTGCAGGTTGAGAAGCAAG+TGG | - | Chr2:11948444-11948463 | None:intergenic | 45.0% |
| !! | CATGGAGGTTGCTTTGGAAA+TGG | + | Chr2:11948350-11948369 | MsG0280007208.01.T01:exon | 45.0% |
| !! | TTCCTGGTTGTGTTGCTTGT+GGG | - | Chr2:11948905-11948924 | None:intergenic | 45.0% |
| !!! | TTAAATTAATTTTATTTTGT+AGG | + | Chr2:11948785-11948804 | MsG0280007208.01.T01:intron | 5.0% |
| AAGCAACACAACCAGGAAGG+AGG | + | Chr2:11948907-11948926 | MsG0280007208.01.T01:CDS | 50.0% | |
| AATGCTTGTCCACACAGTGG+AGG | - | Chr2:11949280-11949299 | None:intergenic | 50.0% | |
| ATCCCACAAGCAACACAACC+AGG | + | Chr2:11948900-11948919 | MsG0280007208.01.T01:CDS | 50.0% | |
| ATTTGTGCATGGCAGTTCGG+TGG | + | Chr2:11948604-11948623 | MsG0280007208.01.T01:intron | 50.0% | |
| CACAAGCAACACAACCAGGA+AGG | + | Chr2:11948904-11948923 | MsG0280007208.01.T01:CDS | 50.0% | |
| TCCTTTCTGTACCTCCTTCC+TGG | - | Chr2:11948921-11948940 | None:intergenic | 50.0% | |
| ! | ACCAGGAAGGAGGTACAGAA+AGG | + | Chr2:11948917-11948936 | MsG0280007208.01.T01:CDS | 50.0% |
| ! | GTTTTGCAACCTCCACTGTG+TGG | + | Chr2:11949268-11949287 | MsG0280007208.01.T01:three_prime_UTR | 50.0% |
| !! | CTTCCTGGTTGTGTTGCTTG+TGG | - | Chr2:11948906-11948925 | None:intergenic | 50.0% |
| !! | ATGTGGGTTAGTGGGACCCA+TGG | - | Chr2:11948160-11948179 | None:intergenic | 55.0% |
| !! | GGGTGGTCATGTGGGTTAGT+GGG | - | Chr2:11948168-11948187 | None:intergenic | 55.0% |
| !! | TGGGTGGTCATGTGGGTTAG+TGG | - | Chr2:11948169-11948188 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 11947984 | 11949368 | 11947984 | ID=MsG0280007208.01;Name=MsG0280007208.01 |
| Chr2 | mRNA | 11947984 | 11949368 | 11947984 | ID=MsG0280007208.01.T01;Parent=MsG0280007208.01;Name=MsG0280007208.01.T01;_AED=0.46;_eAED=0.46;_QI=367|1|1|1|0|0|2|376|102 |
| Chr2 | exon | 11947984 | 11948473 | 11947984 | ID=MsG0280007208.01.T01:exon:2777;Parent=MsG0280007208.01.T01 |
| Chr2 | exon | 11948807 | 11949368 | 11948807 | ID=MsG0280007208.01.T01:exon:2778;Parent=MsG0280007208.01.T01 |
| Chr2 | five_prime_UTR | 11947984 | 11948350 | 11947984 | ID=MsG0280007208.01.T01:five_prime_utr;Parent=MsG0280007208.01.T01 |
| Chr2 | CDS | 11948351 | 11948473 | 11948351 | ID=MsG0280007208.01.T01:cds;Parent=MsG0280007208.01.T01 |
| Chr2 | CDS | 11948807 | 11948992 | 11948807 | ID=MsG0280007208.01.T01:cds;Parent=MsG0280007208.01.T01 |
| Chr2 | three_prime_UTR | 11948993 | 11949368 | 11948993 | ID=MsG0280007208.01.T01:three_prime_utr;Parent=MsG0280007208.01.T01 |
| Gene Sequence |
| Protein sequence |
