AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004775.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004775.01.T01 MTR_1g086640 93.759 721 3 1 1 679 1 721 0.0 1385
MsG0180004775.01.T01 MTR_3g052610 81.337 718 62 4 1 649 1 715 0.0 1170
MsG0180004775.01.T01 MTR_4g485610 79.778 722 64 3 1 679 1 683 0.0 1140
MsG0180004775.01.T01 MTR_1g023985 48.784 658 277 5 50 664 563 1203 0.0 658
MsG0180004775.01.T01 MTR_3g023880 50.459 654 262 7 52 660 407 1043 0.0 650
MsG0180004775.01.T01 MTR_1g114490 49.536 646 260 9 57 659 506 1128 0.0 642
MsG0180004775.01.T01 MTR_6g061840 48.936 658 273 7 50 660 247 888 0.0 628
MsG0180004775.01.T01 MTR_5g075310 46.586 659 250 8 47 660 199 800 0.0 582
MsG0180004775.01.T01 MTR_6g061840 57.325 471 187 3 50 518 247 705 0.0 547
MsG0180004775.01.T01 MTR_3g054400 41.518 672 322 10 50 672 361 1010 0.0 544
MsG0180004775.01.T01 MTR_2g015320 43.328 667 293 11 50 649 46 694 0.0 533
MsG0180004775.01.T01 MTR_2g098440 41.493 670 323 10 50 670 564 1213 1.31e-178 543
MsG0180004775.01.T01 MTR_8g080240 40.678 649 306 10 56 642 3 634 1.19e-164 488
MsG0180004775.01.T01 MTR_8g080240 40.678 649 306 10 56 642 3 634 4.23e-164 488
MsG0180004775.01.T01 MTR_7g095080 38.136 708 321 9 44 651 35 725 1.47e-160 479
MsG0180004775.01.T01 MTR_8g080240 41.963 591 269 9 56 591 3 574 3.10e-154 459
MsG0180004775.01.T01 MTR_6g061840 57.386 352 138 2 50 401 247 586 5.43e-136 412
MsG0180004775.01.T01 MTR_8g041990 38.179 626 212 11 47 625 96 593 7.31e-129 395
MsG0180004775.01.T01 MTR_4g094992 35.922 515 262 10 197 651 13 519 3.03e-97 309
MsG0180004775.01.T01 MTR_1g109170 32.410 722 344 23 38 634 313 1015 4.37e-93 313
MsG0180004775.01.T01 MTR_1g109170 32.410 722 344 23 38 634 313 1015 6.15e-93 313
MsG0180004775.01.T01 MTR_1g056490 31.407 796 403 19 14 679 188 970 3.74e-90 302
MsG0180004775.01.T01 MTR_3g014030 29.607 662 364 13 57 644 266 899 1.25e-80 280
MsG0180004775.01.T01 MTR_3g086770 28.698 676 386 13 40 644 249 899 1.84e-76 268
MsG0180004775.01.T01 MTR_0267s0070 29.814 644 348 14 77 644 939 1554 4.29e-76 267
MsG0180004775.01.T01 MTR_1543s0010 48.684 228 110 2 291 518 1 221 3.06e-62 210
MsG0180004775.01.T01 MTR_4g023590 41.544 272 132 5 49 293 264 535 3.10e-57 211
MsG0180004775.01.T01 MTR_4g023590 40.758 211 116 3 290 500 679 880 1.88e-34 141
MsG0180004775.01.T01 MTR_8g106630 44.131 213 112 3 38 249 257 463 6.52e-47 179
MsG0180004775.01.T01 MTR_8g106630 28.216 482 259 14 269 679 551 1016 1.93e-42 166
MsG0180004775.01.T01 MTR_3g055020 49.664 149 75 0 370 518 49 197 9.79e-43 160
MsG0180004775.01.T01 MTR_8g045110 29.302 430 232 13 262 634 104 518 1.94e-41 160
MsG0180004775.01.T01 MTR_4g134790 39.442 251 137 4 272 518 909 1148 2.02e-41 163
MsG0180004775.01.T01 MTR_4g134790 39.070 215 120 3 44 249 592 804 1.20e-37 151
MsG0180004775.01.T01 MTR_4g134790 39.442 251 137 4 272 518 906 1145 2.04e-41 163
MsG0180004775.01.T01 MTR_4g134790 39.070 215 120 3 44 249 592 804 1.21e-37 151
MsG0180004775.01.T01 MTR_8g044260 40.254 236 134 3 15 249 210 439 3.20e-41 162
MsG0180004775.01.T01 MTR_8g044260 29.841 439 236 11 262 640 517 943 6.80e-39 155
MsG0180004775.01.T01 MTR_5g090430 38.057 247 140 4 272 515 554 790 3.97e-36 146
MsG0180004775.01.T01 MTR_5g090430 35.749 207 118 3 54 249 184 386 3.56e-35 143
MsG0180004775.01.T01 MTR_5g090430 38.057 247 140 4 272 515 441 677 4.32e-36 146
MsG0180004775.01.T01 MTR_5g090430 35.749 207 118 3 54 249 71 273 3.13e-35 143
MsG0180004775.01.T01 MTR_4g120070 35.685 241 98 5 110 293 221 461 2.19e-35 144
MsG0180004775.01.T01 MTR_4g120070 40.952 210 115 3 290 499 605 805 6.97e-35 142
MsG0180004775.01.T01 MTR_1g088590 39.535 172 94 3 57 227 30 192 4.16e-28 121
MsG0180004775.01.T01 MTR_1g088590 36.879 141 83 3 338 473 328 467 3.90e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004775.01.T01 AT3G62310 84.298 726 67 4 1 679 1 726 0.0 1261
MsG0180004775.01.T01 AT2G47250 82.579 729 77 3 1 679 1 729 0.0 1237
MsG0180004775.01.T01 AT3G62310 89.655 522 50 2 1 518 1 522 0.0 963
MsG0180004775.01.T01 AT3G62310 88.302 530 58 2 1 526 1 530 0.0 961
MsG0180004775.01.T01 AT1G32490 48.609 683 283 8 29 660 360 1025 0.0 666
MsG0180004775.01.T01 AT1G32490 48.609 683 283 8 29 660 370 1035 0.0 666
MsG0180004775.01.T01 AT2G35340 48.680 682 283 8 29 660 371 1035 0.0 658
MsG0180004775.01.T01 AT2G35340 48.680 682 283 8 29 660 233 897 0.0 658
MsG0180004775.01.T01 AT3G26560 48.936 658 276 6 50 664 508 1148 0.0 654
MsG0180004775.01.T01 AT4G16680 48.563 661 271 8 52 664 130 769 0.0 624
MsG0180004775.01.T01 AT4G18465 43.609 665 295 11 47 647 38 686 0.0 533
MsG0180004775.01.T01 AT5G13010 41.654 653 311 9 50 651 551 1184 4.49e-180 546
MsG0180004775.01.T01 AT4G16680 57.809 429 164 3 52 480 210 621 1.28e-167 495
MsG0180004775.01.T01 AT1G26370 39.800 701 313 10 42 647 27 713 7.69e-161 480
MsG0180004775.01.T01 AT1G27900 39.692 650 314 11 57 642 4 639 4.66e-160 478
MsG0180004775.01.T01 AT1G27900 41.410 553 258 8 57 557 4 542 4.72e-147 439
MsG0180004775.01.T01 AT1G27900 41.530 549 255 8 57 553 4 538 1.05e-146 437
MsG0180004775.01.T01 AT5G14900 64.164 293 60 2 428 675 2 294 5.08e-128 381
MsG0180004775.01.T01 AT1G48650 31.768 724 349 20 37 634 282 986 2.24e-86 295
MsG0180004775.01.T01 AT1G48650 31.768 724 349 20 37 634 282 986 2.40e-86 295
MsG0180004775.01.T01 AT5G10370 30.376 665 361 14 57 646 306 943 1.03e-83 289
MsG0180004775.01.T01 AT4G01020 30.838 668 354 16 57 646 303 940 2.96e-82 285
MsG0180004775.01.T01 AT2G01130 28.883 779 385 21 38 674 139 890 6.86e-80 275
MsG0180004775.01.T01 AT2G01130 28.883 779 385 21 38 674 204 955 2.01e-79 274
MsG0180004775.01.T01 AT1G33390 39.130 276 140 3 46 293 230 505 1.43e-50 191
MsG0180004775.01.T01 AT1G33390 42.929 198 106 1 303 500 645 835 3.70e-41 162
MsG0180004775.01.T01 AT1G33390 39.130 276 140 3 46 293 230 505 1.43e-50 191
MsG0180004775.01.T01 AT1G33390 42.929 198 106 1 303 500 645 835 3.70e-41 162
MsG0180004775.01.T01 AT2G35920 32.244 459 227 16 240 634 417 855 7.46e-50 187
MsG0180004775.01.T01 AT2G35920 45.876 194 100 3 54 245 167 357 1.51e-43 169
MsG0180004775.01.T01 AT2G35920 32.244 459 227 16 240 634 507 945 1.28e-49 187
MsG0180004775.01.T01 AT2G35920 45.876 194 100 3 54 245 257 447 2.01e-43 169
MsG0180004775.01.T01 AT2G35920 32.244 459 227 16 240 634 475 913 1.40e-49 187
MsG0180004775.01.T01 AT2G35920 45.876 194 100 3 54 245 225 415 2.19e-43 168
MsG0180004775.01.T01 AT5G04895 42.661 218 118 3 33 249 239 450 1.82e-45 175
MsG0180004775.01.T01 AT5G04895 30.415 434 228 13 262 634 528 948 1.31e-36 148
MsG0180004775.01.T01 AT1G58050 36.268 284 158 6 268 546 880 1145 1.68e-42 166
MsG0180004775.01.T01 AT1G58050 36.797 231 125 5 32 249 572 794 1.34e-36 148
MsG0180004775.01.T01 AT2G30800 39.216 204 118 2 49 249 179 379 2.28e-41 162
MsG0180004775.01.T01 AT2G30800 30.997 371 187 10 272 585 552 910 2.11e-34 141
MsG0180004775.01.T01 AT1G58060 37.549 253 146 4 268 518 913 1155 3.76e-40 159
MsG0180004775.01.T01 AT1G58060 38.696 230 123 4 33 249 590 814 1.73e-38 154
MsG0180004775.01.T01 AT1G06670 36.364 220 134 2 30 246 190 406 1.32e-39 157
MsG0180004775.01.T01 AT1G06670 36.047 258 142 6 272 521 576 818 3.25e-33 137
MsG0180004775.01.T01 AT1G06670 36.364 220 134 2 30 246 190 406 1.40e-39 157
MsG0180004775.01.T01 AT1G06670 36.047 258 142 6 272 521 576 818 3.99e-33 137
MsG0180004775.01.T01 AT2G30800 30.997 371 187 10 272 585 209 567 2.39e-34 140
MsG0180004775.01.T01 AT2G47680 29.147 422 233 12 56 437 25 420 5.35e-34 139

Find 188 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAGAATATTATTATT+AGG 0.140979 1:-82604576 MsG0180004775.01.T01:five_prime_UTR
CAGATTCCACAATAATAAAT+TGG 0.144191 1:+82604641 None:intergenic
TACCTCGTTATTACCTTTAA+AGG 0.157975 1:-82599994 MsG0180004775.01.T01:three_prime_UTR
TACCTTACAGATTTATTTAT+TGG 0.158029 1:-82599873 MsG0180004775.01.T01:three_prime_UTR
CACACGCAGGCCCTGGTTTA+AGG 0.178929 1:+82604697 None:intergenic
ACGACAACTTCGTTAATAAT+AGG 0.221173 1:-82601322 MsG0180004775.01.T01:CDS
ATCAAAAGAAGTTGCAAATA+TGG 0.229148 1:-82602659 MsG0180004775.01.T01:CDS
TCTATTTCTGCAATGTTATC+AGG 0.235672 1:-82601998 MsG0180004775.01.T01:intron
GCAAAGGTATCATGAGATTT+TGG 0.239514 1:-82604416 MsG0180004775.01.T01:CDS
ATCATCTTCTTGCGCTTATC+TGG 0.249848 1:+82603357 None:intergenic
GCCTCCAAGTAATCTCTTTC+CGG 0.258286 1:+82602784 None:intergenic
ACTTGAAGCTGAAAAGTTTC+AGG 0.258644 1:-82602881 MsG0180004775.01.T01:CDS
ATTCAAGAATATTATTATTA+GGG 0.264298 1:-82604575 MsG0180004775.01.T01:five_prime_UTR
TCCACTGGATGCAGCCTTCC+AGG 0.271539 1:+82602826 None:intergenic
AGATTAGATCTCAAAATTTC+AGG 0.273158 1:+82602265 None:intergenic
ACAACCAGCATGTCCTTTAA+AGG 0.273778 1:+82599981 None:intergenic
AAAGCACGCATTAAGGTTTC+AGG 0.274292 1:+82602166 None:intergenic
TAAGGCTTCATTTACGATTC+CGG 0.290879 1:+82600167 None:intergenic
AGTTCTTACATTGAAGAAAC+TGG 0.306519 1:-82602233 MsG0180004775.01.T01:CDS
GACCTTCTGCTTAGCAAATC+CGG 0.312615 1:+82602447 None:intergenic
GAAACTTCCTTGACAATTGA+TGG 0.321741 1:-82602490 MsG0180004775.01.T01:CDS
TTGATTCTTGTTGGTGAAAC+TGG 0.333065 1:-82604322 MsG0180004775.01.T01:CDS
TTTCAGACGAGGATGCTTCT+TGG 0.336584 1:-82601349 MsG0180004775.01.T01:intron
GCAGGCCCTGGTTTAAGGTT+AGG 0.340559 1:+82604702 None:intergenic
AAGGCTTCATTTACGATTCC+GGG 0.345491 1:+82600168 None:intergenic
AAAATCTTCTGCTGCATAGC+TGG 0.349787 1:+82602586 None:intergenic
ATTACTTGGAGGCTGCTATT+AGG 0.353702 1:-82602774 MsG0180004775.01.T01:CDS
TCCTTAACTGGAGGTGGAGC+TGG 0.355991 1:+82602559 None:intergenic
ATCATTATTGAAACTTCTTT+CGG 0.356481 1:+82602306 None:intergenic
CACTTCCAAAGCACGCATTA+AGG 0.356922 1:+82602159 None:intergenic
TCATGATACCTTTGCGAGTA+AGG 0.359388 1:+82604424 None:intergenic
TCCTCTTTCTGATGCCAAAC+AGG 0.365319 1:+82604376 None:intergenic
AAAACTAACGGCGGTTTAAT+CGG 0.374136 1:-82604478 MsG0180004775.01.T01:CDS
TGATGGGTACAGAGAGGAAG+AGG 0.375263 1:-82604549 MsG0180004775.01.T01:CDS
AACATTGATAATTAAGCATC+TGG 0.376945 1:-82599767 MsG0180004775.01.T01:three_prime_UTR
TTGGCTACTGATGTGCTATT+CGG 0.379232 1:-82602964 MsG0180004775.01.T01:CDS
TGTGCTATTCGGTCTTCTTA+AGG 0.379320 1:-82602953 MsG0180004775.01.T01:CDS
ATGTCGTCATGTTCCGGATT+GGG 0.380177 1:-82600081 MsG0180004775.01.T01:three_prime_UTR
CGCATTAAGGTTTCAGGGGC+AGG 0.385326 1:+82602172 None:intergenic
AGGTCTATAACCCTCGAGTT+CGG 0.385785 1:-82602429 MsG0180004775.01.T01:CDS
AAGAAATGGATGTGAGTATT+GGG 0.386602 1:-82603275 MsG0180004775.01.T01:CDS
GGTCTATAACCCTCGAGTTC+GGG 0.388070 1:-82602428 MsG0180004775.01.T01:CDS
AATCAGACTTTGATTCTTGT+TGG 0.394110 1:-82604331 MsG0180004775.01.T01:CDS
TCAAAAGAAGTTGCAAATAT+GGG 0.394219 1:-82602658 MsG0180004775.01.T01:CDS
ATCAAAATGTCGTCATGTTC+CGG 0.397109 1:-82600087 MsG0180004775.01.T01:three_prime_UTR
GCCCCTCTTATGAAAGTTCC+TGG 0.399613 1:-82602844 MsG0180004775.01.T01:CDS
TGAAACCTTAATGCGTGCTT+TGG 0.400378 1:-82602164 MsG0180004775.01.T01:CDS
AGTTCGGGTTGAGTCTTTGT+TGG 0.407389 1:-82602413 MsG0180004775.01.T01:CDS
CCCACTCGGGCTTGTGGTCC+AGG 0.408784 1:+82600968 None:intergenic
CCTCCCTCCTTAACTGGAGG+TGG 0.412177 1:+82602553 None:intergenic
CGACAACTTCGTTAATAATA+GGG 0.421091 1:-82601321 MsG0180004775.01.T01:CDS
AGAGGAAAACTCTTCCTGTT+TGG 0.432786 1:-82604390 MsG0180004775.01.T01:CDS
CTTCCAGGAACTTTCATAAG+AGG 0.440929 1:+82602841 None:intergenic
ACGCCGTGTGGCTGAAGAAA+TGG 0.441487 1:-82603289 MsG0180004775.01.T01:CDS
CAGGCCCTGGTTTAAGGTTA+GGG 0.443409 1:+82604703 None:intergenic
ACGTGCTGGAAGAACTCAAC+CGG 0.444434 1:-82602350 MsG0180004775.01.T01:CDS
CAGCTTTCACAGGGCCCACC+TGG 0.445130 1:+82602632 None:intergenic
GCCAGCTCCACCTCCAGTTA+AGG 0.454672 1:-82602560 MsG0180004775.01.T01:CDS
TGGCAGCCACTCTACGAGGC+TGG 0.454699 1:+82603322 None:intergenic
TCCTGTTTGGCATCAGAAAG+AGG 0.454811 1:-82604377 MsG0180004775.01.T01:CDS
TTCCAGCACGTCCAGACCTC+TGG 0.457870 1:+82602362 None:intergenic
ACCTTCTGCTTAGCAAATCC+GGG 0.460121 1:+82602448 None:intergenic
GCTAGTGCACACCAGAGGTC+TGG 0.463575 1:-82602373 MsG0180004775.01.T01:CDS
AGATTCCACAATAATAAATT+GGG 0.465261 1:+82604642 None:intergenic
TTCTTCGTATTTCATTGAAA+CGG 0.465373 1:-82604607 MsG0180004775.01.T01:five_prime_UTR
AGTCAGTGCTGCATAACTTC+AGG 0.466745 1:+82601240 None:intergenic
AGCAATGACGGATCCACTCT+TGG 0.466749 1:-82603031 MsG0180004775.01.T01:CDS
AAAGATGCTTGTTGTTAGTC+CGG 0.469630 1:-82602047 MsG0180004775.01.T01:CDS
TTGTGGTCCAGGCAATTTGA+TGG 0.470835 1:+82600979 None:intergenic
TTTGGAAGTGTTGAATTACT+TGG 0.471069 1:-82602146 MsG0180004775.01.T01:CDS
GTGAGTATTGGGGAAGAGGT+TGG 0.473162 1:-82603264 MsG0180004775.01.T01:CDS
AAATCTTCTGCTGCATAGCT+GGG 0.474547 1:+82602587 None:intergenic
CAATTCCCAATTTATTATTG+TGG 0.475208 1:-82604647 MsG0180004775.01.T01:five_prime_UTR
CTTCAATGTAAGAACTGTGT+TGG 0.475698 1:+82602240 None:intergenic
CTTGAAGCTGAAAAGTTTCA+GGG 0.477243 1:-82602880 MsG0180004775.01.T01:CDS
TGAAGCTCACGAAAGGACTT+TGG 0.481458 1:-82602983 MsG0180004775.01.T01:CDS
GGAACCGGAAAGAGATTACT+TGG 0.482512 1:-82602788 MsG0180004775.01.T01:CDS
GAAGGTAACTTAACAAAGCT+TGG 0.483258 1:-82602109 MsG0180004775.01.T01:CDS
TCAGAAAGAGGATTTCTTGA+AGG 0.485105 1:-82604365 MsG0180004775.01.T01:CDS
ACAACAGCTGGTGCGTATCA+TGG 0.489319 1:-82601273 MsG0180004775.01.T01:CDS
GAAGAAATGGATGTGAGTAT+TGG 0.493314 1:-82603276 MsG0180004775.01.T01:CDS
TACAATGGCACAGCTTTCAC+AGG 0.495335 1:+82602622 None:intergenic
TTGACATCAAAATATCATCA+TGG 0.499603 1:-82600033 MsG0180004775.01.T01:three_prime_UTR
CACCAGAGGTCTGGACGTGC+TGG 0.499927 1:-82602364 MsG0180004775.01.T01:CDS
ATAAGAAAGGCAATGCTAGC+AGG 0.500431 1:-82601191 MsG0180004775.01.T01:CDS
AATGTCGTCATGTTCCGGAT+TGG 0.503557 1:-82600082 MsG0180004775.01.T01:three_prime_UTR
GTTGAATTACTTGGGTGCAC+TGG 0.506759 1:-82602137 MsG0180004775.01.T01:CDS
CTTGCATCCATCAAATTGCC+TGG 0.508234 1:-82600986 MsG0180004775.01.T01:CDS
AGCCAATAAATAAATCTGTA+AGG 0.508444 1:+82599871 None:intergenic
GAAGAAGCAAATGCAGAAAA+CGG 0.511912 1:+82599709 None:intergenic
CGACGACGCTGCCGCGAAGA+TGG 0.513614 1:-82604503 MsG0180004775.01.T01:CDS
TGATAATGTTCGACAACAGC+TGG 0.515447 1:-82601285 MsG0180004775.01.T01:CDS
TTCCAGGAACTTTCATAAGA+GGG 0.520687 1:+82602842 None:intergenic
ATTACCTTTAAAGGACATGC+TGG 0.521988 1:-82599985 MsG0180004775.01.T01:three_prime_UTR
AATCTCATTAACCGTTGGAA+TGG 0.523999 1:-82604451 MsG0180004775.01.T01:CDS
ATAACCACCAACTTCAAGTC+AGG 0.524486 1:+82602913 None:intergenic
CTTGTTGGTGAAACTGGTAG+TGG 0.527235 1:-82604316 MsG0180004775.01.T01:CDS
GGCAGCCACTCTACGAGGCT+GGG 0.527429 1:+82603323 None:intergenic
TTGGAAGTGTTGAATTACTT+GGG 0.527843 1:-82602145 MsG0180004775.01.T01:CDS
CAAGAAACGAGAGAAGGAAA+AGG 0.529166 1:-82600197 MsG0180004775.01.T01:CDS
GGGTACAGAGAGGAAGAGGA+AGG 0.529545 1:-82604545 MsG0180004775.01.T01:CDS
AAACAGACCTGACTTGAAGT+TGG 0.531317 1:-82602920 MsG0180004775.01.T01:CDS
GGATGTGAGTATTGGGGAAG+AGG 0.533162 1:-82603268 MsG0180004775.01.T01:CDS
GAAACATCAAAATCCCAATC+CGG 0.533764 1:+82600068 None:intergenic
AAGCACGCATTAAGGTTTCA+GGG 0.537490 1:+82602167 None:intergenic
TGACATCAAAATATCATCAT+GGG 0.538386 1:-82600032 MsG0180004775.01.T01:three_prime_UTR
CAAAAGAAGTTGCAAATATG+GGG 0.540511 1:-82602657 MsG0180004775.01.T01:CDS
ATTAAGGTTTCAGGGGCAGG+AGG 0.542805 1:+82602175 None:intergenic
ATTCACATGTGTGAACCTGC+TGG 0.545714 1:-82602739 MsG0180004775.01.T01:CDS
CTACTACGTCAACATAAGAA+AGG 0.551235 1:-82601204 MsG0180004775.01.T01:CDS
AGCTCCACCTCCAGTTAAGG+AGG 0.554361 1:-82602557 MsG0180004775.01.T01:CDS
GTGGCTCATCTTGAGCGCAC+AGG 0.556316 1:-82601155 MsG0180004775.01.T01:CDS
TTGAAGATTGCAGTAGTGCA+AGG 0.559374 1:-82603227 MsG0180004775.01.T01:CDS
TCCTGGAAGGCTGCATCCAG+TGG 0.561915 1:-82602827 MsG0180004775.01.T01:CDS
AGATAACCCACTCGGGCTTG+TGG 0.563258 1:+82600962 None:intergenic
GATTATGAGTGAGTTTCCGT+TGG 0.563935 1:-82602083 MsG0180004775.01.T01:CDS
AGAAGGAAAAGGATGAAGCC+CGG 0.564217 1:-82600186 MsG0180004775.01.T01:CDS
AAAACAAGTATGTCTCCAGC+AGG 0.564551 1:+82602724 None:intergenic
CCCCGGATTTGCTAAGCAGA+AGG 0.565728 1:-82602449 MsG0180004775.01.T01:CDS
ACACGCTTCGCTTCACATTG+TGG 0.566257 1:+82600235 None:intergenic
ATGAATATGTTCTTACGAGT+CGG 0.567963 1:-82600936 MsG0180004775.01.T01:CDS
ATGCACCCAGCCTCGTAGAG+TGG 0.568686 1:-82603328 MsG0180004775.01.T01:CDS
TGGGATGCTAGTGTCGTCAA+AGG 0.569360 1:-82599834 MsG0180004775.01.T01:three_prime_UTR
CAGACCTGACTTGAAGTTGG+TGG 0.576381 1:-82602917 MsG0180004775.01.T01:CDS
GACTATGCCATCAATTGTCA+AGG 0.576524 1:+82602483 None:intergenic
GGGCCTCCCTCCTTAACTGG+AGG 0.578464 1:+82602550 None:intergenic
CTGTAAGGTACAACAGAACA+AGG 0.579443 1:+82599886 None:intergenic
CTTAGCCCTAACCTTAAACC+AGG 0.580144 1:-82604708 MsG0180004775.01.T01:five_prime_UTR
CTTGACAGTTAAAGACAACC+AGG 0.583787 1:-82601126 MsG0180004775.01.T01:intron
GTAACAATCTCATTAACCGT+TGG 0.583829 1:-82604456 MsG0180004775.01.T01:CDS
ACTTTGTATCGCTCCAAGAG+TGG 0.584175 1:+82603018 None:intergenic
CTCTTATGAAAGTTCCTGGA+AGG 0.587560 1:-82602840 MsG0180004775.01.T01:CDS
ACAAGCATCTTTGACATCTG+AGG 0.589350 1:+82602058 None:intergenic
CGTGCTGGAAGAACTCAACC+GGG 0.589404 1:-82602349 MsG0180004775.01.T01:CDS
AAAGACTCAACCCGAACTCG+AGG 0.589456 1:+82602418 None:intergenic
TCGAATAATGCAAAATGATG+AGG 0.590068 1:+82599804 None:intergenic
TGACGGATATTCGTGGTGAA+TGG 0.590962 1:-82600897 MsG0180004775.01.T01:intron
AATCTTCTGCTGCATAGCTG+GGG 0.591377 1:+82602588 None:intergenic
GCGAAGATGGTCAAAACTAA+CGG 0.593263 1:-82604490 MsG0180004775.01.T01:CDS
TAAAGTCTAAAGCATTTCCC+CGG 0.593271 1:+82602331 None:intergenic
GCATCAAAATCCCAATCTGA+AGG 0.593711 1:+82600130 None:intergenic
ATGGAAAACCTTACTCGCAA+AGG 0.594193 1:-82604432 MsG0180004775.01.T01:CDS
TTCATTATAGATAACCCACT+CGG 0.595328 1:+82600954 None:intergenic
ATAGTCTATGTTATTGACCC+CGG 0.597720 1:-82602466 MsG0180004775.01.T01:CDS
CACCGCAGATATCTAACAGA+TGG 0.599905 1:-82603069 MsG0180004775.01.T01:intron
CAAGCATCTTTGACATCTGA+GGG 0.603507 1:+82602059 None:intergenic
AGCTGGTGCGTATCATGGCT+AGG 0.604246 1:-82601268 MsG0180004775.01.T01:CDS
CATCCATTTCTTCAGCCACA+CGG 0.607772 1:+82603286 None:intergenic
TCCAGGAACTTTCATAAGAG+GGG 0.608756 1:+82602843 None:intergenic
AGCAGGATATTTCATGCAGG+TGG 0.610174 1:-82601174 MsG0180004775.01.T01:CDS
TTCTTGATGAAGCTCACGAA+AGG 0.610395 1:-82602990 MsG0180004775.01.T01:CDS
GTCACTACTCTAATAGTACA+AGG 0.611825 1:+82599927 None:intergenic
GTTCTTACATTGAAGAAACT+GGG 0.614265 1:-82602232 MsG0180004775.01.T01:CDS
GCCTGGACCACAAGCCCGAG+TGG 0.615553 1:-82600969 MsG0180004775.01.T01:CDS
TTTGACATCTGAGGGTCCAA+CGG 0.616105 1:+82602067 None:intergenic
AGCACGCATTAAGGTTTCAG+GGG 0.617250 1:+82602168 None:intergenic
CAGCTTCTAAAACGAACTGA+GGG 0.619508 1:+82603394 None:intergenic
ACCGGAAAGAGATTACTTGG+AGG 0.620820 1:-82602785 MsG0180004775.01.T01:CDS
CACACGGCGTGAAACAGACA+TGG 0.620880 1:+82603302 None:intergenic
GGTACAACAGAACAAGGTCG+AGG 0.624914 1:+82599892 None:intergenic
GCTAGCAGGATATTTCATGC+AGG 0.627840 1:-82601177 MsG0180004775.01.T01:CDS
TTAAGGTTTCAGGGGCAGGA+GGG 0.628140 1:+82602176 None:intergenic
CATGTCTGTTTCACGCCGTG+TGG 0.629042 1:-82603301 MsG0180004775.01.T01:CDS
ATCTTCTGCTGCATAGCTGG+GGG 0.635596 1:+82602589 None:intergenic
TTAGACAAATCATAGTAATG+TGG 0.637983 1:+82600262 None:intergenic
GAATTTCATACGTACTGTGA+CGG 0.638943 1:-82600914 MsG0180004775.01.T01:CDS
TCATTATAGATAACCCACTC+GGG 0.639528 1:+82600955 None:intergenic
TCATTCGAACAGTTGAACTC+CGG 0.639894 1:+82602028 None:intergenic
CGTACTGTGACGGATATTCG+TGG 0.642151 1:-82600904 MsG0180004775.01.T01:CDS
AGAAATGGATGTGAGTATTG+GGG 0.642173 1:-82603274 MsG0180004775.01.T01:CDS
CCACCTCCAGTTAAGGAGGG+AGG 0.644076 1:-82602553 MsG0180004775.01.T01:CDS
CCTGGACCACAAGCCCGAGT+GGG 0.651385 1:-82600968 MsG0180004775.01.T01:CDS
TTGGGTGCACTGGATGATGA+AGG 0.657309 1:-82602127 MsG0180004775.01.T01:CDS
GCTTTACAAGAAACGAGAGA+AGG 0.659120 1:-82600203 MsG0180004775.01.T01:CDS
AAAAGAAGTTGCAAATATGG+GGG 0.660073 1:-82602656 MsG0180004775.01.T01:CDS
AAGACTCAACCCGAACTCGA+GGG 0.660253 1:+82602419 None:intergenic
ACAGCTTCTAAAACGAACTG+AGG 0.669791 1:+82603393 None:intergenic
GCTCCACCTCCAGTTAAGGA+GGG 0.670620 1:-82602556 MsG0180004775.01.T01:CDS
GACATGGCAGCCACTCTACG+AGG 0.673364 1:+82603318 None:intergenic
TTAGCCCTAACCTTAAACCA+GGG 0.677257 1:-82604707 MsG0180004775.01.T01:five_prime_UTR
AAAATTTCAGGATAAGTCTG+CGG 0.680372 1:+82602277 None:intergenic
GGAGGCTGCTATTAGGACAG+TGG 0.681365 1:-82602767 MsG0180004775.01.T01:CDS
ACAATGGCACAGCTTTCACA+GGG 0.687644 1:+82602623 None:intergenic
CCTTCTGCTTAGCAAATCCG+GGG 0.695741 1:+82602449 None:intergenic
CAAAAGCTAGTGCACACCAG+AGG 0.706637 1:-82602378 MsG0180004775.01.T01:CDS
GTCCTTTAAAGGTAATAACG+AGG 0.740903 1:+82599992 None:intergenic
GTGCTGGAAGAACTCAACCG+GGG 0.783475 1:-82602348 MsG0180004775.01.T01:CDS
AAGATGGTCAAAACTAACGG+CGG 0.785469 1:-82604487 MsG0180004775.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAAGAATATTATTATT+AGG - Chr1:82599868-82599887 MsG0180004775.01.T01:three_prime_UTR 10.0%
!! ATTCAAGAATATTATTATTA+GGG - Chr1:82599869-82599888 MsG0180004775.01.T01:three_prime_UTR 10.0%
!!! ATTTTTATATGATATTTACT+GGG - Chr1:82603665-82603684 MsG0180004775.01.T01:intron 10.0%
!!! TAATTTTTTTTATCTAAACT+AGG + Chr1:82603736-82603755 None:intergenic 10.0%
!!! TATTTTTATATGATATTTAC+TGG - Chr1:82603664-82603683 MsG0180004775.01.T01:intron 10.0%
!! AAAATTATATGAACACTAAT+TGG - Chr1:82600622-82600641 MsG0180004775.01.T01:intron 15.0%
!! AGAATAAAATGAAAAAAAGT+AGG + Chr1:82603017-82603036 None:intergenic 15.0%
!! CCAACTAATTAAAAATATTT+AGG + Chr1:82603883-82603902 None:intergenic 15.0%
!!! AGTAATTTTAATGAAAGAAT+TGG - Chr1:82604487-82604506 MsG0180004775.01.T01:CDS 15.0%
!!! ATTTGCTAATTTAATTTCTT+TGG - Chr1:82601005-82601024 MsG0180004775.01.T01:intron 15.0%
!!! CCTAAATATTTTTAATTAGT+TGG - Chr1:82603880-82603899 MsG0180004775.01.T01:intron 15.0%
!!! GTTTATATGTTTTTGAATTA+TGG - Chr1:82600302-82600321 MsG0180004775.01.T01:intron 15.0%
!!! TATATGATTTTGTATAGTTT+AGG + Chr1:82600589-82600608 None:intergenic 15.0%
!! AAAAAAAATAGAGGAGAATT+TGG - Chr1:82600932-82600951 MsG0180004775.01.T01:CDS 20.0%
!! AGATTCCACAATAATAAATT+GGG + Chr1:82599805-82599824 None:intergenic 20.0%
!! ATCATTATTGAAACTTCTTT+CGG + Chr1:82602141-82602160 None:intergenic 20.0%
!! GTTTATTAAATGTATGCAAA+TGG - Chr1:82603070-82603089 MsG0180004775.01.T01:intron 20.0%
!! TAAATATGAATGCAAATCTT+CGG + Chr1:82603410-82603429 None:intergenic 20.0%
!! TAATTTCGGATTATAAACAA+TGG + Chr1:82603935-82603954 None:intergenic 20.0%
!! TACCTTACAGATTTATTTAT+TGG - Chr1:82604571-82604590 MsG0180004775.01.T01:five_prime_UTR 20.0%
!! TAGCTTATGCAAATAAATAT+TGG - Chr1:82600362-82600381 MsG0180004775.01.T01:intron 20.0%
!! TAGTTTAGGAACTAAATTAA+TGG + Chr1:82600575-82600594 None:intergenic 20.0%
!!! ATTATTATTAGGGTTTTGAT+GGG - Chr1:82599879-82599898 MsG0180004775.01.T01:three_prime_UTR 20.0%
!!! CTGTTTATTTTTTTTCTGAT+TGG - Chr1:82603045-82603064 MsG0180004775.01.T01:CDS 20.0%
!!! TATTATTATTAGGGTTTTGA+TGG - Chr1:82599878-82599897 MsG0180004775.01.T01:three_prime_UTR 20.0%
!!! TTAATGGATTTCATATACTT+AGG + Chr1:82600559-82600578 None:intergenic 20.0%
! AAAAAAATTACAAGCCTTGA+TGG - Chr1:82603746-82603765 MsG0180004775.01.T01:intron 25.0%
! AAAAAATTACAAGCCTTGAT+GGG - Chr1:82603747-82603766 MsG0180004775.01.T01:intron 25.0%
! AAAAAGCTAATTGTAGGATT+GGG - Chr1:82600743-82600762 MsG0180004775.01.T01:intron 25.0%
! AAAAATAAGTCAATCCAAAC+AGG - Chr1:82600506-82600525 MsG0180004775.01.T01:intron 25.0%
! AATTACACAACGTAATTTCA+AGG + Chr1:82601269-82601288 None:intergenic 25.0%
! ACATTTCAGAATAAAAGAGA+TGG + Chr1:82601338-82601357 None:intergenic 25.0%
! ACTTAAAGGGATTAAATCTA+TGG + Chr1:82600249-82600268 None:intergenic 25.0%
! AGATTAGATCTCAAAATTTC+AGG + Chr1:82602182-82602201 None:intergenic 25.0%
! AGCCAATAAATAAATCTGTA+AGG + Chr1:82604576-82604595 None:intergenic 25.0%
! AGTGAATACTAGATATCTTA+TGG - Chr1:82600809-82600828 MsG0180004775.01.T01:intron 25.0%
! AGTGAATACTAGATATGTTA+TGG - Chr1:82600772-82600791 MsG0180004775.01.T01:intron 25.0%
! ATAAATCAATTTAGCAAACC+TGG + Chr1:82603339-82603358 None:intergenic 25.0%
! ATCAAAAGAAGTTGCAAATA+TGG - Chr1:82601785-82601804 MsG0180004775.01.T01:intron 25.0%
! ATTTCAGAATAAAAGAGATG+GGG + Chr1:82601336-82601355 None:intergenic 25.0%
! CAATACAAAATGAAAAACAG+AGG + Chr1:82603365-82603384 None:intergenic 25.0%
! CAATTCCCAATTTATTATTG+TGG - Chr1:82599797-82599816 MsG0180004775.01.T01:three_prime_UTR 25.0%
! CAGATTCCACAATAATAAAT+TGG + Chr1:82599806-82599825 None:intergenic 25.0%
! CATTTCAGAATAAAAGAGAT+GGG + Chr1:82601337-82601356 None:intergenic 25.0%
! GATTTAATCCCTTTAAGTAA+TGG - Chr1:82600251-82600270 MsG0180004775.01.T01:CDS 25.0%
! GTGAATACTAGATATCTTAT+GGG - Chr1:82600810-82600829 MsG0180004775.01.T01:intron 25.0%
! GTGAATACTAGATATGTTAT+GGG - Chr1:82600773-82600792 MsG0180004775.01.T01:intron 25.0%
! TAAAAAGCTAATTGTAGGAT+TGG - Chr1:82600742-82600761 MsG0180004775.01.T01:intron 25.0%
! TCAAAAGAAGTTGCAAATAT+GGG - Chr1:82601786-82601805 MsG0180004775.01.T01:intron 25.0%
! TGAAGTAAAAAGCTAATTGT+AGG - Chr1:82600737-82600756 MsG0180004775.01.T01:intron 25.0%
! TGACATCAAAATATCATCAT+GGG - Chr1:82604412-82604431 MsG0180004775.01.T01:CDS 25.0%
! TGAGTATAAAAAATTTCCAC+TGG + Chr1:82601636-82601655 None:intergenic 25.0%
! TTAGACAAATCATAGTAATG+TGG + Chr1:82604185-82604204 None:intergenic 25.0%
! TTCTTCGTATTTCATTGAAA+CGG - Chr1:82599837-82599856 MsG0180004775.01.T01:three_prime_UTR 25.0%
! TTGAATTCTACTCATTACTA+TGG - Chr1:82604032-82604051 MsG0180004775.01.T01:intron 25.0%
! TTGACATCAAAATATCATCA+TGG - Chr1:82604411-82604430 MsG0180004775.01.T01:CDS 25.0%
!! AACATTGATAATTAAGCATC+TGG - Chr1:82604677-82604696 MsG0180004775.01.T01:five_prime_UTR 25.0%
!! CAACTTCTTTTGATATTTTG+CGG + Chr1:82601779-82601798 None:intergenic 25.0%
!! TAATGACTGCATTTTAAACA+CGG + Chr1:82600650-82600669 None:intergenic 25.0%
!! TCAAAACTAAGTCTTTTTCT+AGG + Chr1:82603619-82603638 None:intergenic 25.0%
!! TGGTTATGTTTAGATCATTT+TGG - Chr1:82600201-82600220 MsG0180004775.01.T01:CDS 25.0%
!!! AATTTTTTATACTCAGGAAC+CGG - Chr1:82601641-82601660 MsG0180004775.01.T01:intron 25.0%
!!! AGTGGAAATTTTTTATACTC+AGG - Chr1:82601635-82601654 MsG0180004775.01.T01:intron 25.0%
!!! ATTTCTTTGGTGTGTAATTT+TGG - Chr1:82601018-82601037 MsG0180004775.01.T01:intron 25.0%
!!! TACTTCGTTTTGTTGTTATT+TGG - Chr1:82600181-82600200 MsG0180004775.01.T01:CDS 25.0%
!!! TGGCTTCAAATTTGTTTTTT+GGG - Chr1:82604591-82604610 MsG0180004775.01.T01:five_prime_UTR 25.0%
!!! TTGGCTTCAAATTTGTTTTT+TGG - Chr1:82604590-82604609 MsG0180004775.01.T01:five_prime_UTR 25.0%
!!! TTTAGTTCATTTTGACTTCA+TGG - Chr1:82602244-82602263 MsG0180004775.01.T01:CDS 25.0%
!!! TTTCTTTGGTGTGTAATTTT+GGG - Chr1:82601019-82601038 MsG0180004775.01.T01:intron 25.0%
AAAAATTACAAGCCTTGATG+GGG - Chr1:82603748-82603767 MsG0180004775.01.T01:intron 30.0%
AAAAGAAGTTGCAAATATGG+GGG - Chr1:82601788-82601807 MsG0180004775.01.T01:intron 30.0%
AAAAGCTAATTGTAGGATTG+GGG - Chr1:82600744-82600763 MsG0180004775.01.T01:intron 30.0%
AAAATTTCAGGATAAGTCTG+CGG + Chr1:82602170-82602189 None:intergenic 30.0%
AAGAAATGGATGTGAGTATT+GGG - Chr1:82601169-82601188 MsG0180004775.01.T01:CDS 30.0%
AAGATCCGTAGTATTATTAC+TGG + Chr1:82604082-82604101 None:intergenic 30.0%
AATCAGACTTTGATTCTTGT+TGG - Chr1:82600113-82600132 MsG0180004775.01.T01:three_prime_UTR 30.0%
ACCAGATGTTTCAGTAATTT+CGG + Chr1:82603949-82603968 None:intergenic 30.0%
ACGACAACTTCGTTAATAAT+AGG - Chr1:82603122-82603141 MsG0180004775.01.T01:intron 30.0%
ACTTAACGTATCAGCATTAA+GGG + Chr1:82600532-82600551 None:intergenic 30.0%
AGAAAATAAGCCAATCCAAA+TGG + Chr1:82600329-82600348 None:intergenic 30.0%
AGTTCTTACATTGAAGAAAC+TGG - Chr1:82602211-82602230 MsG0180004775.01.T01:CDS 30.0%
ATGAATATGTTCTTACGAGT+CGG - Chr1:82603508-82603527 MsG0180004775.01.T01:intron 30.0%
ATGATATATTCCGCTGAAAT+TGG - Chr1:82600872-82600891 MsG0180004775.01.T01:intron 30.0%
ATGTATCATTCAAAAGCTTG+TGG + Chr1:82600459-82600478 None:intergenic 30.0%
ATTGGCACTAAAAATTAGAG+TGG - Chr1:82600890-82600909 MsG0180004775.01.T01:intron 30.0%
CAAAAGAAGTTGCAAATATG+GGG - Chr1:82601787-82601806 MsG0180004775.01.T01:intron 30.0%
CGACAACTTCGTTAATAATA+GGG - Chr1:82603123-82603142 MsG0180004775.01.T01:intron 30.0%
CTGATCATTTATTATCTGAC+AGG - Chr1:82604144-82604163 MsG0180004775.01.T01:intron 30.0%
GAAAATAAGCCAATCCAAAT+GGG + Chr1:82600328-82600347 None:intergenic 30.0%
GAATTGTTATATAAGTGTGC+AGG - Chr1:82600837-82600856 MsG0180004775.01.T01:intron 30.0%
GTATTCTCTCATGAAGAAAA+TGG - Chr1:82602778-82602797 MsG0180004775.01.T01:CDS 30.0%
GTTCTTACATTGAAGAAACT+GGG - Chr1:82602212-82602231 MsG0180004775.01.T01:CDS 30.0%
TAATAATACTACGGATCTTG+TGG - Chr1:82604083-82604102 MsG0180004775.01.T01:intron 30.0%
TACCTCGTTATTACCTTTAA+AGG - Chr1:82604450-82604469 MsG0180004775.01.T01:CDS 30.0%
TACTTAACGTATCAGCATTA+AGG + Chr1:82600533-82600552 None:intergenic 30.0%
TCATTTATTATCTGACAGGT+TGG - Chr1:82604148-82604167 MsG0180004775.01.T01:intron 30.0%
TCGAATAATGCAAAATGATG+AGG + Chr1:82604643-82604662 None:intergenic 30.0%
TTCATTATAGATAACCCACT+CGG + Chr1:82603493-82603512 None:intergenic 30.0%
! AGCTAATTGTTGTCCTTTTA+TGG - Chr1:82600956-82600975 MsG0180004775.01.T01:CDS 30.0%
! ATCATTTTGCATTATTCGAC+TGG - Chr1:82604644-82604663 MsG0180004775.01.T01:five_prime_UTR 30.0%
! CTAATTGTTGTCCTTTTATG+GGG - Chr1:82600958-82600977 MsG0180004775.01.T01:CDS 30.0%
! GCTAATTGTTGTCCTTTTAT+GGG - Chr1:82600957-82600976 MsG0180004775.01.T01:CDS 30.0%
! GCTTAGACAAATAGCTATTT+TGG + Chr1:82603388-82603407 None:intergenic 30.0%
! TTTTTGAATTATGGCCCATT+TGG - Chr1:82600311-82600330 MsG0180004775.01.T01:intron 30.0%
!! GACATACTTGTTTTTCTTAC+TGG - Chr1:82601729-82601748 MsG0180004775.01.T01:intron 30.0%
!! TCTATTTCTGCAATGTTATC+AGG - Chr1:82602446-82602465 MsG0180004775.01.T01:CDS 30.0%
!! TTGGAAGTGTTGAATTACTT+GGG - Chr1:82602299-82602318 MsG0180004775.01.T01:CDS 30.0%
!! TTTGGAAGTGTTGAATTACT+TGG - Chr1:82602298-82602317 MsG0180004775.01.T01:CDS 30.0%
!!! AAGTTTCAGGGCTATTTTTT+TGG - Chr1:82601576-82601595 MsG0180004775.01.T01:intron 30.0%
!!! ATTTTTAGTGCCAATTTCAG+CGG + Chr1:82600885-82600904 None:intergenic 30.0%
AAAACTAACGGCGGTTTAAT+CGG - Chr1:82599966-82599985 MsG0180004775.01.T01:three_prime_UTR 35.0%
AAACATCTTGATCATGTGCA+CGG + Chr1:82602599-82602618 None:intergenic 35.0%
AAACTGCAGCCATTACTTAA+AGG + Chr1:82600263-82600282 None:intergenic 35.0%
AACTGCAGCCATTACTTAAA+GGG + Chr1:82600262-82600281 None:intergenic 35.0%
AATCTCATTAACCGTTGGAA+TGG - Chr1:82599993-82600012 MsG0180004775.01.T01:three_prime_UTR 35.0%
ACTAAGTTCCCTTAGCATTA+TGG + Chr1:82602519-82602538 None:intergenic 35.0%
ACTTGAAGCTGAAAAGTTTC+AGG - Chr1:82601563-82601582 MsG0180004775.01.T01:intron 35.0%
ACTTGAGTAGAAGTTAGATG+AGG + Chr1:82603859-82603878 None:intergenic 35.0%
AGCACTTACTTAGAATCCTA+TGG + Chr1:82602734-82602753 None:intergenic 35.0%
ATAGTCTATGTTATTGACCC+CGG - Chr1:82601978-82601997 MsG0180004775.01.T01:intron 35.0%
ATCAAAATGTCGTCATGTTC+CGG - Chr1:82604357-82604376 MsG0180004775.01.T01:CDS 35.0%
ATGTTATGGGATAAGATGCT+TGG - Chr1:82600786-82600805 MsG0180004775.01.T01:intron 35.0%
CATATTTAACGATTCTGCTC+TGG - Chr1:82603422-82603441 MsG0180004775.01.T01:intron 35.0%
CTACTACGTCAACATAAGAA+AGG - Chr1:82603240-82603259 MsG0180004775.01.T01:CDS 35.0%
CTATGTAGTCGTTTCATGAT+AGG - Chr1:82600670-82600689 MsG0180004775.01.T01:intron 35.0%
CTTCAATGTAAGAACTGTGT+TGG + Chr1:82602207-82602226 None:intergenic 35.0%
CTTGAAGCTGAAAAGTTTCA+GGG - Chr1:82601564-82601583 MsG0180004775.01.T01:intron 35.0%
CTTGAGTAGAAGTTAGATGA+GGG + Chr1:82603858-82603877 None:intergenic 35.0%
GAAACATCAAAATCCCAATC+CGG + Chr1:82604379-82604398 None:intergenic 35.0%
GAAACTTCCTTGACAATTGA+TGG - Chr1:82601954-82601973 MsG0180004775.01.T01:intron 35.0%
GAAATTACTGAAACATCTGG+TGG - Chr1:82603948-82603967 MsG0180004775.01.T01:intron 35.0%
GAAATTGATTATCACAGACG+AGG + Chr1:82602846-82602865 None:intergenic 35.0%
GAAGAAATGGATGTGAGTAT+TGG - Chr1:82601168-82601187 MsG0180004775.01.T01:CDS 35.0%
GAAGGTAACTTAACAAAGCT+TGG - Chr1:82602335-82602354 MsG0180004775.01.T01:CDS 35.0%
GAATACGTAAGCTATTGAAC+TGG - Chr1:82603908-82603927 MsG0180004775.01.T01:intron 35.0%
GAATTTCATACGTACTGTGA+CGG - Chr1:82603530-82603549 MsG0180004775.01.T01:intron 35.0%
GAGAGCCAGTAATAATACTA+CGG - Chr1:82604074-82604093 MsG0180004775.01.T01:intron 35.0%
GTAACAATCTCATTAACCGT+TGG - Chr1:82599988-82600007 MsG0180004775.01.T01:three_prime_UTR 35.0%
GTCACTACTCTAATAGTACA+AGG + Chr1:82604520-82604539 None:intergenic 35.0%
GTTCTCACAAACCAAAATTG+TGG - Chr1:82600403-82600422 MsG0180004775.01.T01:intron 35.0%
TAAGGCTTCATTTACGATTC+CGG + Chr1:82604280-82604299 None:intergenic 35.0%
TAAGGGAACTTAGTTGAGTT+AGG - Chr1:82602525-82602544 MsG0180004775.01.T01:CDS 35.0%
TACCATCTGTTAGATATCTG+CGG + Chr1:82601380-82601399 None:intergenic 35.0%
TAGTACCCAATTGCTTTATC+CGG - Chr1:82602872-82602891 MsG0180004775.01.T01:CDS 35.0%
TCAGAAAGAGGATTTCTTGA+AGG - Chr1:82600079-82600098 MsG0180004775.01.T01:three_prime_UTR 35.0%
TCATTATAGATAACCCACTC+GGG + Chr1:82603492-82603511 None:intergenic 35.0%
TCCGAAATTACTGAAACATC+TGG - Chr1:82603945-82603964 MsG0180004775.01.T01:intron 35.0%
TTCCAGGAACTTTCATAAGA+GGG + Chr1:82601605-82601624 None:intergenic 35.0%
! AGAAATGGATGTGAGTATTG+GGG - Chr1:82601170-82601189 MsG0180004775.01.T01:CDS 35.0%
! AGCTTATGAAGCCACAATTT+TGG + Chr1:82600417-82600436 None:intergenic 35.0%
! AGTAAGGTTTTCCATTCCAA+CGG + Chr1:82600007-82600026 None:intergenic 35.0%
! ATTACCTTTAAAGGACATGC+TGG - Chr1:82604459-82604478 MsG0180004775.01.T01:CDS 35.0%
! GTCCTTTAAAGGTAATAACG+AGG + Chr1:82604455-82604474 None:intergenic 35.0%
! TAAAGTCTAAAGCATTTCCC+CGG + Chr1:82602116-82602135 None:intergenic 35.0%
! TTGATTCTTGTTGGTGAAAC+TGG - Chr1:82600122-82600141 MsG0180004775.01.T01:three_prime_UTR 35.0%
!! AAAGATGCTTGTTGTTAGTC+CGG - Chr1:82602397-82602416 MsG0180004775.01.T01:CDS 35.0%
!! ACTTGTTTTTCTTACTGGAG+AGG - Chr1:82601734-82601753 MsG0180004775.01.T01:intron 35.0%
!! ATCATGAGATTTTGGAGAAG+AGG - Chr1:82600036-82600055 MsG0180004775.01.T01:three_prime_UTR 35.0%
!! ATGACGACATTTTGATGTCA+GGG + Chr1:82604353-82604372 None:intergenic 35.0%
!! GAGTTAGGCTTCTTTTGAAA+TGG - Chr1:82602540-82602559 MsG0180004775.01.T01:CDS 35.0%
!! GGATTTCTTGAAGGTTTTGA+AGG - Chr1:82600088-82600107 MsG0180004775.01.T01:three_prime_UTR 35.0%
!! TAATGGCTGCAGTTTTAACA+AGG - Chr1:82600268-82600287 MsG0180004775.01.T01:CDS 35.0%
!!! ACCTTTTTTGCCTTCAGATT+GGG - Chr1:82604304-82604323 MsG0180004775.01.T01:CDS 35.0%
!!! CTTTTTCTAGGACAACCATA+GGG + Chr1:82603607-82603626 None:intergenic 35.0%
!!! GCAAAGGTATCATGAGATTT+TGG - Chr1:82600028-82600047 MsG0180004775.01.T01:three_prime_UTR 35.0%
!!! TCTTTTTCTAGGACAACCAT+AGG + Chr1:82603608-82603627 None:intergenic 35.0%
!!! TGTGCACTAGCTTTTGATAT+TGG + Chr1:82602062-82602081 None:intergenic 35.0%
!!! TTAGTTTTGAAACCTTGAGC+TGG - Chr1:82603629-82603648 MsG0180004775.01.T01:intron 35.0%
!!! TTTTAACAAGGCGCTGATTA+GGG - Chr1:82600280-82600299 MsG0180004775.01.T01:CDS 35.0%
AAAACAAGTATGTCTCCAGC+AGG + Chr1:82601723-82601742 None:intergenic 40.0%
AAAATCTTCTGCTGCATAGC+TGG + Chr1:82601861-82601880 None:intergenic 40.0%
AAAGCACGCATTAAGGTTTC+AGG + Chr1:82602281-82602300 None:intergenic 40.0%
AAATCTTCTGCTGCATAGCT+GGG + Chr1:82601860-82601879 None:intergenic 40.0%
AACCGATCTAACCCCATAAA+AGG + Chr1:82600972-82600991 None:intergenic 40.0%
AAGATGGTCAAAACTAACGG+CGG - Chr1:82599957-82599976 MsG0180004775.01.T01:three_prime_UTR 40.0%
AAGCACGCATTAAGGTTTCA+GGG + Chr1:82602280-82602299 None:intergenic 40.0%
AAGGCAAAAAAGGTCAGGTA+AGG + Chr1:82604298-82604317 None:intergenic 40.0%
AAGGCTTCATTTACGATTCC+GGG + Chr1:82604279-82604298 None:intergenic 40.0%
AAGTTCCCTTAGCATTATGG+TGG + Chr1:82602516-82602535 None:intergenic 40.0%
ACAACCAGCATGTCCTTTAA+AGG + Chr1:82604466-82604485 None:intergenic 40.0%
ACAAGCATCTTTGACATCTG+AGG + Chr1:82602389-82602408 None:intergenic 40.0%
AGAAGTTAGATGAGGGACTT+TGG + Chr1:82603851-82603870 None:intergenic 40.0%
AGAGGAAAACTCTTCCTGTT+TGG - Chr1:82600054-82600073 MsG0180004775.01.T01:three_prime_UTR 40.0%
AGTTCCCTTAGCATTATGGT+GGG + Chr1:82602515-82602534 None:intergenic 40.0%
ATAACCACCAACTTCAAGTC+AGG + Chr1:82601534-82601553 None:intergenic 40.0%
ATAAGAAAGGCAATGCTAGC+AGG - Chr1:82603253-82603272 MsG0180004775.01.T01:CDS 40.0%
ATCATCTTCTTGCGCTTATC+TGG + Chr1:82601090-82601109 None:intergenic 40.0%
ATCTGAAGGCAAAAAAGGTC+AGG + Chr1:82604303-82604322 None:intergenic 40.0%
ATCTGTTAGATATCTGCGGT+GGG + Chr1:82601376-82601395 None:intergenic 40.0%
ATGGAAAACCTTACTCGCAA+AGG - Chr1:82600012-82600031 MsG0180004775.01.T01:three_prime_UTR 40.0%
ATTACTTGGAGGCTGCTATT+AGG - Chr1:82601670-82601689 MsG0180004775.01.T01:intron 40.0%
ATTGTAATATCCCGACCCTA+TGG - Chr1:82603589-82603608 MsG0180004775.01.T01:intron 40.0%
CAAGAAACGAGAGAAGGAAA+AGG - Chr1:82604247-82604266 MsG0180004775.01.T01:intron 40.0%
CAAGCATCTTTGACATCTGA+GGG + Chr1:82602388-82602407 None:intergenic 40.0%
CAATCTTTCTTTCCCCATCA+AGG + Chr1:82603763-82603782 None:intergenic 40.0%
CTCTTATGAAAGTTCCTGGA+AGG - Chr1:82601604-82601623 MsG0180004775.01.T01:intron 40.0%
CTGTAAGGTACAACAGAACA+AGG + Chr1:82604561-82604580 None:intergenic 40.0%
CTTCCAGGAACTTTCATAAG+AGG + Chr1:82601606-82601625 None:intergenic 40.0%
CTTGACAGTTAAAGACAACC+AGG - Chr1:82603318-82603337 MsG0180004775.01.T01:CDS 40.0%
GAATTATGGCCCATTTGGAT+TGG - Chr1:82600316-82600335 MsG0180004775.01.T01:intron 40.0%
GACTATGCCATCAATTGTCA+AGG + Chr1:82601964-82601983 None:intergenic 40.0%
GATTATGAGTGAGTTTCCGT+TGG - Chr1:82602361-82602380 MsG0180004775.01.T01:CDS 40.0%
GCATCAAAATCCCAATCTGA+AGG + Chr1:82604317-82604336 None:intergenic 40.0%
GCGAAGATGGTCAAAACTAA+CGG - Chr1:82599954-82599973 MsG0180004775.01.T01:three_prime_UTR 40.0%
GCTTTACAAGAAACGAGAGA+AGG - Chr1:82604241-82604260 MsG0180004775.01.T01:intron 40.0%
TAACGATTCTGCTCTGGTAT+AGG - Chr1:82603428-82603447 MsG0180004775.01.T01:intron 40.0%
TCATGATACCTTTGCGAGTA+AGG + Chr1:82600023-82600042 None:intergenic 40.0%
TCATTCGAACAGTTGAACTC+CGG + Chr1:82602419-82602438 None:intergenic 40.0%
TCCAGGAACTTTCATAAGAG+GGG + Chr1:82601604-82601623 None:intergenic 40.0%
TCCCAATCTGAAGGCAAAAA+AGG + Chr1:82604308-82604327 None:intergenic 40.0%
TGAAACCTTAATGCGTGCTT+TGG - Chr1:82602280-82602299 MsG0180004775.01.T01:CDS 40.0%
TGTAGTCGTTTCATGATAGG+TGG - Chr1:82600673-82600692 MsG0180004775.01.T01:intron 40.0%
TTAGCCCTAACCTTAAACCA+GGG - Chr1:82599737-82599756 MsG0180004775.01.T01:three_prime_UTR 40.0%
TTCTTGATGAAGCTCACGAA+AGG - Chr1:82601454-82601473 MsG0180004775.01.T01:intron 40.0%
TTGAAGATTGCAGTAGTGCA+AGG - Chr1:82601217-82601236 MsG0180004775.01.T01:CDS 40.0%
! AAACAGACCTGACTTGAAGT+TGG - Chr1:82601524-82601543 MsG0180004775.01.T01:intron 40.0%
! ACACCACAATTTTCCTTCCA+GGG + Chr1:82601920-82601939 None:intergenic 40.0%
! ATTTGCATTTTGCCAGCTCA+AGG + Chr1:82603644-82603663 None:intergenic 40.0%
! GCACTTACTGTTTTGCTTGT+AGG + Chr1:82602989-82603008 None:intergenic 40.0%
! GTCCTTTTATGGGGTTAGAT+CGG - Chr1:82600967-82600986 MsG0180004775.01.T01:CDS 40.0%
! TACTGTTTTGCTTGTAGGCA+TGG + Chr1:82602984-82603003 None:intergenic 40.0%
! TGATAATGTTCGACAACAGC+TGG - Chr1:82603159-82603178 MsG0180004775.01.T01:intron 40.0%
! TGTGCTATTCGGTCTTCTTA+AGG - Chr1:82601491-82601510 MsG0180004775.01.T01:intron 40.0%
! TTGGCTACTGATGTGCTATT+CGG - Chr1:82601480-82601499 MsG0180004775.01.T01:intron 40.0%
!! ACAGCTTCTAAAACGAACTG+AGG + Chr1:82601054-82601073 None:intergenic 40.0%
!! CAGCTTCTAAAACGAACTGA+GGG + Chr1:82601053-82601072 None:intergenic 40.0%
!! CATGACGACATTTTGATGTC+AGG + Chr1:82604354-82604373 None:intergenic 40.0%
!! GCTTTTGAGAGAAGCAATGA+CGG - Chr1:82601401-82601420 MsG0180004775.01.T01:intron 40.0%
!! TGGTAGTGGAAAAACTACAC+AGG - Chr1:82600142-82600161 MsG0180004775.01.T01:three_prime_UTR 40.0%
!!! GACCTTTTTTGCCTTCAGAT+TGG - Chr1:82604303-82604322 MsG0180004775.01.T01:CDS 40.0%
!!! GTTAGTTTTGACCATCTTCG+CGG + Chr1:82599955-82599974 None:intergenic 40.0%
!!! GTTTTAACAAGGCGCTGATT+AGG - Chr1:82600279-82600298 MsG0180004775.01.T01:CDS 40.0%
AATCTTCTGCTGCATAGCTG+GGG + Chr1:82601859-82601878 None:intergenic 45.0%
AATGTCGTCATGTTCCGGAT+TGG - Chr1:82604362-82604381 MsG0180004775.01.T01:CDS 45.0%
ACAATGGCACAGCTTTCACA+GGG + Chr1:82601824-82601843 None:intergenic 45.0%
ACCGGAAAGAGATTACTTGG+AGG - Chr1:82601659-82601678 MsG0180004775.01.T01:intron 45.0%
ACCTTCTGCTTAGCAAATCC+GGG + Chr1:82601999-82602018 None:intergenic 45.0%
ACTTTGTATCGCTCCAAGAG+TGG + Chr1:82601429-82601448 None:intergenic 45.0%
AGAAGGAAAAGGATGAAGCC+CGG - Chr1:82604258-82604277 MsG0180004775.01.T01:intron 45.0%
AGAGTCCCACCATAATGCTA+AGG - Chr1:82602507-82602526 MsG0180004775.01.T01:CDS 45.0%
AGCACGCATTAAGGTTTCAG+GGG + Chr1:82602279-82602298 None:intergenic 45.0%
AGCAGGATATTTCATGCAGG+TGG - Chr1:82603270-82603289 MsG0180004775.01.T01:CDS 45.0%
AGGTCTATAACCCTCGAGTT+CGG - Chr1:82602015-82602034 MsG0180004775.01.T01:CDS 45.0%
AGTCAGTGCTGCATAACTTC+AGG + Chr1:82603207-82603226 None:intergenic 45.0%
ATCAGCATTAAGGGCCTGTT+TGG + Chr1:82600523-82600542 None:intergenic 45.0%
ATCCTATGGTACATGCCAAC+CGG + Chr1:82602720-82602739 None:intergenic 45.0%
ATGTCGTCATGTTCCGGATT+GGG - Chr1:82604363-82604382 MsG0180004775.01.T01:CDS 45.0%
ATTATCACAGACGAGGTCCA+CGG + Chr1:82602839-82602858 None:intergenic 45.0%
ATTCACATGTGTGAACCTGC+TGG - Chr1:82601705-82601724 MsG0180004775.01.T01:intron 45.0%
CAATTGCTTTATCCGGCCTA+GGG - Chr1:82602879-82602898 MsG0180004775.01.T01:CDS 45.0%
CACCGCAGATATCTAACAGA+TGG - Chr1:82601375-82601394 MsG0180004775.01.T01:intron 45.0%
CACTTCCAAAGCACGCATTA+AGG + Chr1:82602288-82602307 None:intergenic 45.0%
CAGCATTTGTTCATGTGTGC+GGG - Chr1:82602568-82602587 MsG0180004775.01.T01:CDS 45.0%
CATCAGCAGCTGTCTTCTTT+GGG - Chr1:82602684-82602703 MsG0180004775.01.T01:CDS 45.0%
CATCCATTTCTTCAGCCACA+CGG + Chr1:82601161-82601180 None:intergenic 45.0%
CATCTGTTAGATATCTGCGG+TGG + Chr1:82601377-82601396 None:intergenic 45.0%
CCAGCATTTGTTCATGTGTG+CGG - Chr1:82602567-82602586 MsG0180004775.01.T01:CDS 45.0%
CGCACACATGAACAAATGCT+GGG + Chr1:82602569-82602588 None:intergenic 45.0%
CTAATTGTAGGATTGGGGCT+TGG - Chr1:82600749-82600768 MsG0180004775.01.T01:intron 45.0%
CTAGGCCGGATAAAGCAATT+GGG + Chr1:82602880-82602899 None:intergenic 45.0%
CTTAGCCCTAACCTTAAACC+AGG - Chr1:82599736-82599755 MsG0180004775.01.T01:three_prime_UTR 45.0%
CTTGCATCCATCAAATTGCC+TGG - Chr1:82603458-82603477 MsG0180004775.01.T01:intron 45.0%
GACCTTCTGCTTAGCAAATC+CGG + Chr1:82602000-82602019 None:intergenic 45.0%
GAGTCCCACCATAATGCTAA+GGG - Chr1:82602508-82602527 MsG0180004775.01.T01:CDS 45.0%
GATGAAGCCAAAGCTAGGTT+TGG - Chr1:82602919-82602938 MsG0180004775.01.T01:CDS 45.0%
GATGTGTCCAAACCTAGCTT+TGG + Chr1:82602929-82602948 None:intergenic 45.0%
GCCTCCAAGTAATCTCTTTC+CGG + Chr1:82601663-82601682 None:intergenic 45.0%
GCTAGCAGGATATTTCATGC+AGG - Chr1:82603267-82603286 MsG0180004775.01.T01:CDS 45.0%
GGAACCGGAAAGAGATTACT+TGG - Chr1:82601656-82601675 MsG0180004775.01.T01:intron 45.0%
GGGGGAAGAGTAGAATACAA+TGG + Chr1:82601840-82601859 None:intergenic 45.0%
GTTGAATTACTTGGGTGCAC+TGG - Chr1:82602307-82602326 MsG0180004775.01.T01:CDS 45.0%
TACAATGGCACAGCTTTCAC+AGG + Chr1:82601825-82601844 None:intergenic 45.0%
TCATCAGCAGCTGTCTTCTT+TGG - Chr1:82602683-82602702 MsG0180004775.01.T01:CDS 45.0%
TCCTCTTTCTGATGCCAAAC+AGG + Chr1:82600071-82600090 None:intergenic 45.0%
TCCTGTTTGGCATCAGAAAG+AGG - Chr1:82600067-82600086 MsG0180004775.01.T01:three_prime_UTR 45.0%
TCTGTTAGATATCTGCGGTG+GGG + Chr1:82601375-82601394 None:intergenic 45.0%
TGAAGCTCACGAAAGGACTT+TGG - Chr1:82601461-82601480 MsG0180004775.01.T01:intron 45.0%
TGCTCAGTTGCACATGAATG+CGG - Chr1:82602634-82602653 MsG0180004775.01.T01:CDS 45.0%
TTGTGGTCCAGGCAATTTGA+TGG + Chr1:82603468-82603487 None:intergenic 45.0%
TTTCAGACGAGGATGCTTCT+TGG - Chr1:82603095-82603114 MsG0180004775.01.T01:intron 45.0%
TTTGACATCTGAGGGTCCAA+CGG + Chr1:82602380-82602399 None:intergenic 45.0%
! ACCACAATTTTCCTTCCAGG+GGG + Chr1:82601918-82601937 None:intergenic 45.0%
! CACCACAATTTTCCTTCCAG+GGG + Chr1:82601919-82601938 None:intergenic 45.0%
! CTTGTTGGTGAAACTGGTAG+TGG - Chr1:82600128-82600147 MsG0180004775.01.T01:three_prime_UTR 45.0%
! GACACCACAATTTTCCTTCC+AGG + Chr1:82601921-82601940 None:intergenic 45.0%
! GGGACTTTGGAAAAGACTTG+AGG + Chr1:82603838-82603857 None:intergenic 45.0%
! TGACGGATATTCGTGGTGAA+TGG - Chr1:82603547-82603566 MsG0180004775.01.T01:intron 45.0%
! TGCAAATGGCTTTTCAGACG+AGG - Chr1:82603084-82603103 MsG0180004775.01.T01:intron 45.0%
! TTAGCATTATGGTGGGACTC+TGG + Chr1:82602508-82602527 None:intergenic 45.0%
!! AGTTCGGGTTGAGTCTTTGT+TGG - Chr1:82602031-82602050 MsG0180004775.01.T01:CDS 45.0%
!! TTCTAGGACAACCATAGGGT+CGG + Chr1:82603603-82603622 None:intergenic 45.0%
!! ATATTAAAAAAAAAAAATAG+AGG - Chr1:82600923-82600942 MsG0180004775.01.T01:CDS 5.0%
AAAGACTCAACCCGAACTCG+AGG + Chr1:82602029-82602048 None:intergenic 50.0%
AAGACTCAACCCGAACTCGA+GGG + Chr1:82602028-82602047 None:intergenic 50.0%
ACAACAGCTGGTGCGTATCA+TGG - Chr1:82603171-82603190 MsG0180004775.01.T01:intron 50.0%
ACACGCTTCGCTTCACATTG+TGG + Chr1:82604212-82604231 None:intergenic 50.0%
ACGTGCTGGAAGAACTCAAC+CGG - Chr1:82602094-82602113 MsG0180004775.01.T01:CDS 50.0%
AGTTGCAAATATGGGGGACC+AGG - Chr1:82601794-82601813 MsG0180004775.01.T01:intron 50.0%
ATCTTCTGCTGCATAGCTGG+GGG + Chr1:82601858-82601877 None:intergenic 50.0%
ATTAAGGTTTCAGGGGCAGG+AGG + Chr1:82602272-82602291 None:intergenic 50.0%
CAAAAGCTAGTGCACACCAG+AGG - Chr1:82602066-82602085 MsG0180004775.01.T01:CDS 50.0%
CAGTTGCACATGAATGCGGT+TGG - Chr1:82602638-82602657 MsG0180004775.01.T01:CDS 50.0%
CCAATTGCTTTATCCGGCCT+AGG - Chr1:82602878-82602897 MsG0180004775.01.T01:CDS 50.0%
CCGCACACATGAACAAATGC+TGG + Chr1:82602570-82602589 None:intergenic 50.0%
CCTAGGCCGGATAAAGCAAT+TGG + Chr1:82602881-82602900 None:intergenic 50.0%
CCTTCTGCTTAGCAAATCCG+GGG + Chr1:82601998-82602017 None:intergenic 50.0%
CGATTCTGCTCTGGTATAGG+TGG - Chr1:82603431-82603450 MsG0180004775.01.T01:intron 50.0%
CTGTTAGATATCTGCGGTGG+GGG + Chr1:82601374-82601393 None:intergenic 50.0%
GACCCTACAAAAACACACGC+AGG + Chr1:82599763-82599782 None:intergenic 50.0%
GCCCCTCTTATGAAAGTTCC+TGG - Chr1:82601600-82601619 MsG0180004775.01.T01:intron 50.0%
GCTAGGTTTGGACACATCGA+TGG - Chr1:82602931-82602950 MsG0180004775.01.T01:CDS 50.0%
GCTGCTGATGACTACCTAAC+TGG + Chr1:82602674-82602693 None:intergenic 50.0%
GGTACAACAGAACAAGGTCG+AGG + Chr1:82604555-82604574 None:intergenic 50.0%
GGTCTATAACCCTCGAGTTC+GGG - Chr1:82602016-82602035 MsG0180004775.01.T01:CDS 50.0%
TCCTATGGTACATGCCAACC+GGG + Chr1:82602719-82602738 None:intergenic 50.0%
TGGGATGCTAGTGTCGTCAA+AGG - Chr1:82604610-82604629 MsG0180004775.01.T01:five_prime_UTR 50.0%
TTAAGGTTTCAGGGGCAGGA+GGG + Chr1:82602271-82602290 None:intergenic 50.0%
TTGCACATGAATGCGGTTGG+TGG - Chr1:82602641-82602660 MsG0180004775.01.T01:CDS 50.0%
TTGGGTGCACTGGATGATGA+AGG - Chr1:82602317-82602336 MsG0180004775.01.T01:CDS 50.0%
TTGGTGGAGTGTGTCCAGTT+AGG - Chr1:82602657-82602676 MsG0180004775.01.T01:CDS 50.0%
! CAGACCTGACTTGAAGTTGG+TGG - Chr1:82601527-82601546 MsG0180004775.01.T01:intron 50.0%
! CAGGCCCTGGTTTAAGGTTA+GGG + Chr1:82599744-82599763 None:intergenic 50.0%
! CCACAATTTTCCTTCCAGGG+GGG + Chr1:82601917-82601936 None:intergenic 50.0%
! TAGGGAGGCACAAAAAGCTG+CGG - Chr1:82602897-82602916 MsG0180004775.01.T01:CDS 50.0%
! TCTAGGACAACCATAGGGTC+GGG + Chr1:82603602-82603621 None:intergenic 50.0%
! TGATGGGTACAGAGAGGAAG+AGG - Chr1:82599895-82599914 MsG0180004775.01.T01:three_prime_UTR 50.0%
!! AGCAATGACGGATCCACTCT+TGG - Chr1:82601413-82601432 MsG0180004775.01.T01:intron 50.0%
!! CGTACTGTGACGGATATTCG+TGG - Chr1:82603540-82603559 MsG0180004775.01.T01:intron 50.0%
!! GGATGTGAGTATTGGGGAAG+AGG - Chr1:82601176-82601195 MsG0180004775.01.T01:CDS 50.0%
!! GGCCTGCGTGTGTTTTTGTA+GGG - Chr1:82599758-82599777 MsG0180004775.01.T01:three_prime_UTR 50.0%
!! GGGTTTTGATGGGTACAGAG+AGG - Chr1:82599889-82599908 MsG0180004775.01.T01:three_prime_UTR 50.0%
!! GTGAGTATTGGGGAAGAGGT+TGG - Chr1:82601180-82601199 MsG0180004775.01.T01:CDS 50.0%
ACAAAAACACACGCAGGCCC+TGG + Chr1:82599757-82599776 None:intergenic 55.0%
ACGCCGTGTGGCTGAAGAAA+TGG - Chr1:82601155-82601174 MsG0180004775.01.T01:CDS 55.0%
AGATAACCCACTCGGGCTTG+TGG + Chr1:82603485-82603504 None:intergenic 55.0%
AGCTCCACCTCCAGTTAAGG+AGG - Chr1:82601887-82601906 MsG0180004775.01.T01:intron 55.0%
AGCTGGTGCGTATCATGGCT+AGG - Chr1:82603176-82603195 MsG0180004775.01.T01:intron 55.0%
CACACGGCGTGAAACAGACA+TGG + Chr1:82601145-82601164 None:intergenic 55.0%
CATCTGCTGACCTTCTTCCG+TGG - Chr1:82602819-82602838 MsG0180004775.01.T01:CDS 55.0%
CATGTCTGTTTCACGCCGTG+TGG - Chr1:82601143-82601162 MsG0180004775.01.T01:CDS 55.0%
CCCCCCTGGAAGGAAAATTG+TGG - Chr1:82601914-82601933 MsG0180004775.01.T01:intron 55.0%
CCTATGGTACATGCCAACCG+GGG + Chr1:82602718-82602737 None:intergenic 55.0%
CGCATTAAGGTTTCAGGGGC+AGG + Chr1:82602275-82602294 None:intergenic 55.0%
CGTGCTGGAAGAACTCAACC+GGG - Chr1:82602095-82602114 MsG0180004775.01.T01:CDS 55.0%
CTATGGTACATGCCAACCGG+GGG + Chr1:82602717-82602736 None:intergenic 55.0%
CTGCGGATGAAGCCAAAGCT+AGG - Chr1:82602914-82602933 MsG0180004775.01.T01:CDS 55.0%
GCAAATATGGGGGACCAGGT+GGG - Chr1:82601798-82601817 MsG0180004775.01.T01:intron 55.0%
GCTCCACCTCCAGTTAAGGA+GGG - Chr1:82601888-82601907 MsG0180004775.01.T01:intron 55.0%
GGAGGCTGCTATTAGGACAG+TGG - Chr1:82601677-82601696 MsG0180004775.01.T01:intron 55.0%
GGGTACAGAGAGGAAGAGGA+AGG - Chr1:82599899-82599918 MsG0180004775.01.T01:three_prime_UTR 55.0%
GTGCTGGAAGAACTCAACCG+GGG - Chr1:82602096-82602115 MsG0180004775.01.T01:CDS 55.0%
TCCTTAACTGGAGGTGGAGC+TGG + Chr1:82601888-82601907 None:intergenic 55.0%
TGCAAATATGGGGGACCAGG+TGG - Chr1:82601797-82601816 MsG0180004775.01.T01:intron 55.0%
TTGCTTTATCCGGCCTAGGG+AGG - Chr1:82602882-82602901 MsG0180004775.01.T01:CDS 55.0%
! CTTTTTGTGCCTCCCTAGGC+CGG + Chr1:82602894-82602913 None:intergenic 55.0%
! GCAGCTTTTTGTGCCTCCCT+AGG + Chr1:82602898-82602917 None:intergenic 55.0%
! GCAGGCCCTGGTTTAAGGTT+AGG + Chr1:82599745-82599764 None:intergenic 55.0%
! TTCTTTGGGTTCCATGCCCC+CGG - Chr1:82602698-82602717 MsG0180004775.01.T01:CDS 55.0%
!! CCCCGGATTTGCTAAGCAGA+AGG - Chr1:82601995-82602014 MsG0180004775.01.T01:intron 55.0%
!! GGGCCTGCGTGTGTTTTTGT+AGG - Chr1:82599757-82599776 MsG0180004775.01.T01:three_prime_UTR 55.0%
ATGCACCCAGCCTCGTAGAG+TGG - Chr1:82601116-82601135 MsG0180004775.01.T01:intron 60.0%
CACACGCAGGCCCTGGTTTA+AGG + Chr1:82599750-82599769 None:intergenic 60.0%
CAGACGAGGTCCACGGAAGA+AGG + Chr1:82602832-82602851 None:intergenic 60.0%
CCACCTCCAGTTAAGGAGGG+AGG - Chr1:82601891-82601910 MsG0180004775.01.T01:intron 60.0%
CCCCGGTTGGCATGTACCAT+AGG - Chr1:82602715-82602734 MsG0180004775.01.T01:CDS 60.0%
CCTCCCTCCTTAACTGGAGG+TGG + Chr1:82601894-82601913 None:intergenic 60.0%
GACATGGCAGCCACTCTACG+AGG + Chr1:82601129-82601148 None:intergenic 60.0%
GCCAGCTCCACCTCCAGTTA+AGG - Chr1:82601884-82601903 MsG0180004775.01.T01:intron 60.0%
GCTAGTGCACACCAGAGGTC+TGG - Chr1:82602071-82602090 MsG0180004775.01.T01:CDS 60.0%
GTGGCTCATCTTGAGCGCAC+AGG - Chr1:82603289-82603308 MsG0180004775.01.T01:CDS 60.0%
TCCACTGGATGCAGCCTTCC+AGG + Chr1:82601621-82601640 None:intergenic 60.0%
TCCTGGAAGGCTGCATCCAG+TGG - Chr1:82601617-82601636 MsG0180004775.01.T01:intron 60.0%
TTCCAGCACGTCCAGACCTC+TGG + Chr1:82602085-82602104 None:intergenic 60.0%
CACCAGAGGTCTGGACGTGC+TGG - Chr1:82602080-82602099 MsG0180004775.01.T01:CDS 65.0%
CAGCTTTCACAGGGCCCACC+TGG + Chr1:82601815-82601834 None:intergenic 65.0%
CCTGGACCACAAGCCCGAGT+GGG - Chr1:82603476-82603495 MsG0180004775.01.T01:intron 65.0%
GGCAGCCACTCTACGAGGCT+GGG + Chr1:82601124-82601143 None:intergenic 65.0%
GGGCCTCCCTCCTTAACTGG+AGG + Chr1:82601897-82601916 None:intergenic 65.0%
GTACATGCCAACCGGGGGCA+TGG + Chr1:82602712-82602731 None:intergenic 65.0%
TGGCAGCCACTCTACGAGGC+TGG + Chr1:82601125-82601144 None:intergenic 65.0%
TTGGGTTCCATGCCCCCGGT+TGG - Chr1:82602702-82602721 MsG0180004775.01.T01:CDS 65.0%
CCCACTCGGGCTTGTGGTCC+AGG + Chr1:82603479-82603498 None:intergenic 70.0%
CGACGACGCTGCCGCGAAGA+TGG - Chr1:82599941-82599960 MsG0180004775.01.T01:three_prime_UTR 70.0%
GCCTGGACCACAAGCCCGAG+TGG - Chr1:82603475-82603494 MsG0180004775.01.T01:intron 70.0%
GGGGGGCCTCCCTCCTTAAC+TGG + Chr1:82601900-82601919 None:intergenic 70.0%
GTTAAGGAGGGAGGCCCCCC+TGG - Chr1:82601900-82601919 MsG0180004775.01.T01:intron 70.0%
AGGAGGGAGGCCCCCCTGGA+AGG - Chr1:82601904-82601923 MsG0180004775.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 82599720 82604746 82599720 ID=MsG0180004775.01;Name=MsG0180004775.01
Chr1 mRNA 82599720 82604746 82599720 ID=MsG0180004775.01.T01;Parent=MsG0180004775.01;Name=MsG0180004775.01.T01;_AED=0.24;_eAED=0.24;_QI=177|0.8|1|1|1|1|6|454|679
Chr1 exon 82599720 82600300 82599720 ID=MsG0180004775.01.T01:exon:8599;Parent=MsG0180004775.01.T01
Chr1 exon 82600898 82601016 82600898 ID=MsG0180004775.01.T01:exon:8598;Parent=MsG0180004775.01.T01
Chr1 exon 82601127 82601365 82601127 ID=MsG0180004775.01.T01:exon:8597;Parent=MsG0180004775.01.T01
Chr1 exon 82601999 82603083 82601999 ID=MsG0180004775.01.T01:exon:8596;Parent=MsG0180004775.01.T01
Chr1 exon 82603216 82603418 82603216 ID=MsG0180004775.01.T01:exon:8595;Parent=MsG0180004775.01.T01
Chr1 exon 82604303 82604746 82604303 ID=MsG0180004775.01.T01:exon:8594;Parent=MsG0180004775.01.T01
Chr1 five_prime_UTR 82604570 82604746 82604570 ID=MsG0180004775.01.T01:five_prime_utr;Parent=MsG0180004775.01.T01
Chr1 CDS 82604303 82604569 82604303 ID=MsG0180004775.01.T01:cds;Parent=MsG0180004775.01.T01
Chr1 CDS 82603216 82603418 82603216 ID=MsG0180004775.01.T01:cds;Parent=MsG0180004775.01.T01
Chr1 CDS 82601999 82603083 82601999 ID=MsG0180004775.01.T01:cds;Parent=MsG0180004775.01.T01
Chr1 CDS 82601127 82601365 82601127 ID=MsG0180004775.01.T01:cds;Parent=MsG0180004775.01.T01
Chr1 CDS 82600898 82601016 82600898 ID=MsG0180004775.01.T01:cds;Parent=MsG0180004775.01.T01
Chr1 CDS 82600174 82600300 82600174 ID=MsG0180004775.01.T01:cds;Parent=MsG0180004775.01.T01
Chr1 three_prime_UTR 82599720 82600173 82599720 ID=MsG0180004775.01.T01:three_prime_utr;Parent=MsG0180004775.01.T01
Gene Sequence

>MsG0180004775.01.T01

ATGGGTACAGAGAGGAAGAGGAAGGTGAGTTTATTCGACGTCGTCGACGACGCTGCCGCGAAGATGGTCAAAACTAACGGCGGTTTAATCGGTAACAATCTCATTAACCGTTGGAATGGAAAACCTTACTCGCAAAGGTATCATGAGATTTTGGAGAAGAGGAAAACTCTTCCTGTTTGGCATCAGAAAGAGGATTTCTTGAAGGTTTTGAAGGATAATCAGACTTTGATTCTTGTTGGTGAAACTGGTAGTGGAAAAACTACACAGATCCCTCAGTTCGTTTTAGAAGCTGTTGACTTAGAGACTCCAGATAAGCGCAAGAAGATGATGATTGCATGCACCCAGCCTCGTAGAGTGGCTGCCATGTCTGTTTCACGCCGTGTGGCTGAAGAAATGGATGTGAGTATTGGGGAAGAGGTTGGTTATAGCATCAGATTTGAAGATTGCAGTAGTGCAAGGACAGTTTTGAAATATCTAACAGATGGTATGCTTTTGAGAGAAGCAATGACGGATCCACTCTTGGAGCGATACAAAGTAATAATTCTTGATGAAGCTCACGAAAGGACTTTGGCTACTGATGTGCTATTCGGTCTTCTTAAGGAAGTTCTTAAAAACAGACCTGACTTGAAGTTGGTGGTTATGAGTGCAACACTTGAAGCTGAAAAGTTTCAGGGCTATTTTTTTGGTGCCCCTCTTATGAAAGTTCCTGGAAGGCTGCATCCAGTGGAAATTTTTTATACTCAGGAACCGGAAAGAGATTACTTGGAGGCTGCTATTAGGACAGTGGTGCAGATTCACATGTGTGAACCTGCTGGAGACATACTTGTTTTTCTTACTGGAGAGGAAGAGATAGAAGATGCATGCCGCAAAATATCAAAAGAAGTTGCAAATATGGGGGACCAGGTGGGCCCTGTGAAAGCTGTGCCATTGTATTCTACTCTTCCCCCAGCTATGCAGCAGAAGATTTTTGAGCCAGCTCCACCTCCAGTTAAGGAGGGAGGCCCCCCTGGAAGGAAAATTGTGGTGTCAACAAACATAGCAGAAACTTCCTTGACAATTGATGGCATAGTCTATGTTATTGACCCCGGATTTGCTAAGCAGAAGGTCTATAACCCTCGAGTTCGGGTTGAGTCTTTGTTGGTGTCTCCAATATCAAAAGCTAGTGCACACCAGAGGTCTGGACGTGCTGGAAGAACTCAACCGGGGAAATGCTTTAGACTTTATACCGAAAGAAGTTTCAATAATGATCTTCAGCCGCAGACTTATCCTGAAATTTTGAGATCTAATCTCGCCAACACAGTTCTTACATTGAAGAAACTGGGCATAGATGATTTAGTTCATTTTGACTTCATGGACCCTCCTGCCCCTGAAACCTTAATGCGTGCTTTGGAAGTGTTGAATTACTTGGGTGCACTGGATGATGAAGGTAACTTAACAAAGCTTGGTGAGATTATGAGTGAGTTTCCGTTGGACCCTCAGATGTCAAAGATGCTTGTTGTTAGTCCGGAGTTCAACTGTTCGAATGAGATTCTTTCTATTTCTGCAATGTTATCAGACGAGGATGCTTCTTGGTGCTACGACAACTTCGTTAATAATAGGGCGCTTAAATCAGCTGATAATGTTCGACAACAGCTGGTGCGTATCATGGCTAGGTTTAACCTGAAGTTATGCAGCACTGACTTCAATAGTCGCGACTACTACGTCAACATAAGAAAGGCAATGCTAGCAGGATATTTCATGCAGGTGGCTCATCTTGAGCGCACAGGACACTACTTGACAGTTAAAGACAACCAGGTGGTACACTTGCATCCATCAAATTGCCTGGACCACAAGCCCGAGTGGGTTATCTATAATGAATATGTTCTTACGAGTCGGAATTTCATACGTACTGTGACGGATATTCGTGGTGAATGGTTGGTTGATATAGCACCACATTACTATGATTTGTCTAATTTTCCACAATGTGAAGCGAAGCGTGTTCTTGAAAAGCTTTACAAGAAACGAGAGAAGGAAAAGGATGAAGCCCGGAATCGTAAATGA
Protein sequence

>MsG0180004775.01.T01

MGTERKRKVSLFDVVDDAAAKMVKTNGGLIGNNLINRWNGKPYSQRYHEILEKRKTLPVWHQKEDFLKVLKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRKKMMIACTQPRRVAAMSVSRRVAEEMDVSIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFFGAPLMKVPGRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKISKEVANMGDQVGPVKAVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSDEDASWCYDNFVNNRALKSADNVRQQLVRIMARFNLKLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLSNFPQCEAKRVLEKLYKKREKEKDEARNRK*