AlfalfaGEDB | MsG0180004954.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004954.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004954.01.T01	XP_003591662.2	47.166	441	58	12	162	435	396	828	2.52E-86	298
MsG0180004954.01.T01	XP_003591662.2	85.526	76	11	0	8	83	87	162	1.08E-32	143
MsG0180004954.01.T01	XP_003591662.2	38.983	177	55	4	10	137	105	277	1.40E-19	104

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004954.01.T01	G7I308	47.166	441	58	12	162	435	396	828	1.20e-86	298

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048703.01	MsG0180004954.01	0.823535	1.314631e-53	1.135014e-50
MsG0080048727.01	MsG0180004954.01	-0.850195	1.986960e-60	3.861187e-57
MsG0080049068.01	MsG0180004954.01	-0.865712	4.841654e-65	1.590706e-61
MsG0080049069.01	MsG0180004954.01	-0.818809	1.614394e-52	1.220851e-49
MsG0180000549.01	MsG0180004954.01	-0.817362	3.429456e-52	2.492347e-49
MsG0180001175.01	MsG0180004954.01	-0.823536	1.313827e-53	1.134360e-50
MsG0180001248.01	MsG0180004954.01	0.820763	5.776236e-53	4.611815e-50
MsG0180001270.01	MsG0180004954.01	-0.807734	4.373057e-50	2.454613e-47
MsG0180001610.01	MsG0180004954.01	-0.811758	5.965331e-51	3.723844e-48
MsG0180002700.01	MsG0180004954.01	-0.833257	5.917614e-56	6.778029e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004954.01.T01	MTR_1g090340	47.166	441	58	12	162	435	396	828	3.05e-90	298
MsG0180004954.01.T01	MTR_1g090340	85.526	76	11	0	8	83	87	162	1.30e-36	143
MsG0180004954.01.T01	MTR_1g090340	38.983	177	55	4	10	137	105	277	1.69e-23	104
MsG0180004954.01.T01	MTR_1g040610	46.078	102	49	3	203	304	478	573	4.01e-11	65.9
MsG0180004954.01.T01	MTR_1g040610	46.078	102	49	3	203	304	328	423	4.35e-11	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 259 sgRNAs with CRISPR-Local

Find 569 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGAGGACTGAGGCAC+TGG	0.492380	1:-84923104	None:intergenic
AAAGTTATTGATATGAGAGA+TGG	0.529563	1:-84922176	None:intergenic
AAAGTTTGTGAATCTGATAG+TGG	0.567452	1:+84921980	MsG0180004954.01.T01:CDS
AAATAATGGGTCCTTGCTTC+AGG	0.353132	1:+84922216	MsG0180004954.01.T01:three_prime_UTR
AAATTGCCGGACAGTTTACA+AGG	0.511006	1:+84920216	MsG0180004954.01.T01:CDS
AAATTTGAATATACTATTGG+TGG	0.523387	1:-84922090	None:intergenic
AAATTTGATTGAACCGGGGC+AGG	0.459067	1:-84923299	None:intergenic
AACAACTTCCCTTTCAAATT+CGG	0.289444	1:+84922430	MsG0180004954.01.T01:three_prime_UTR
AACAGGCAAGATGCAGGAAT+CGG	0.519078	1:+84922519	MsG0180004954.01.T01:three_prime_UTR
AACAGTTCAAATCAAAATAA+TGG	0.254853	1:+84922202	MsG0180004954.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTATTCCTAATCCAC+AGG	-	Chr1:84918039-84918058	None:intergenic	30.0%
AAAGTTTGTGAATCTGATAG+TGG	+	Chr1:84921980-84921999	MsG0180004954.01.T01:CDS	30.0%
AACAACTTCCCTTTCAAATT+CGG	+	Chr1:84922430-84922449	MsG0180004954.01.T01:three_prime_UTR	30.0%
AATAATTTGGATGGCACATT+TGG	+	Chr1:84920240-84920259	MsG0180004954.01.T01:CDS	30.0%
AATATTACCTTCTGGACAAA+AGG	+	Chr1:84918714-84918733	MsG0180004954.01.T01:intron	30.0%
AATGTTACAACTTACAAGTG+AGG	-	Chr1:84923898-84923917	None:intergenic	30.0%
ATATGTCTCTCTAATTCTAC+AGG	+	Chr1:84919574-84919593	MsG0180004954.01.T01:intron	30.0%
ATCTACACTATCAAAGTTTG+AGG	-	Chr1:84921778-84921797	None:intergenic	30.0%
ATGAAATTGATATGGACATC+AGG	-	Chr1:84918515-84918534	None:intergenic	30.0%
ATTAAAGAATTCTCTGGACT+GGG	+	Chr1:84920779-84920798	MsG0180004954.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	84916714	84924030	84916714	ID=MsG0180004954.01;Name=MsG0180004954.01
Chr1	mRNA	84916714	84924030	84916714	ID=MsG0180004954.01.T01;Parent=MsG0180004954.01;Name=MsG0180004954.01.T01;_AED=0.31;_eAED=0.33;_QI=0\|0.11\|0.2\|1\|0.88\|0.9\|10\|1976\|438
Chr1	exon	84916714	84916830	84916714	ID=MsG0180004954.01.T01:exon:27968;Parent=MsG0180004954.01.T01
Chr1	exon	84917892	84918038	84917892	ID=MsG0180004954.01.T01:exon:27969;Parent=MsG0180004954.01.T01
Chr1	exon	84919212	84919357	84919212	ID=MsG0180004954.01.T01:exon:27970;Parent=MsG0180004954.01.T01
Chr1	exon	84919596	84919679	84919596	ID=MsG0180004954.01.T01:exon:27971;Parent=MsG0180004954.01.T01
Chr1	exon	84919888	84919999	84919888	ID=MsG0180004954.01.T01:exon:27972;Parent=MsG0180004954.01.T01
Chr1	exon	84920183	84920491	84920183	ID=MsG0180004954.01.T01:exon:27973;Parent=MsG0180004954.01.T01
Chr1	exon	84920817	84920929	84920817	ID=MsG0180004954.01.T01:exon:27974;Parent=MsG0180004954.01.T01
Chr1	exon	84921021	84921115	84921021	ID=MsG0180004954.01.T01:exon:27975;Parent=MsG0180004954.01.T01
Chr1	exon	84921302	84921384	84921302	ID=MsG0180004954.01.T01:exon:27976;Parent=MsG0180004954.01.T01
Chr1	exon	84921944	84924030	84921944	ID=MsG0180004954.01.T01:exon:27977;Parent=MsG0180004954.01.T01
Chr1	CDS	84916714	84916830	84916714	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84917892	84918038	84917892	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84919212	84919357	84919212	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84919596	84919679	84919596	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84919888	84919999	84919888	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84920183	84920491	84920183	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84920817	84920929	84920817	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84921021	84921115	84921021	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84921302	84921384	84921302	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	CDS	84921944	84922054	84921944	ID=MsG0180004954.01.T01:cds;Parent=MsG0180004954.01.T01
Chr1	three_prime_UTR	84922055	84924030	84922055	ID=MsG0180004954.01.T01:three_prime_utr;Parent=MsG0180004954.01.T01

Gene Sequence

>MsG0180004954.01.T01

TTGATATGTGGTTTTTATGATGCAGGGTTGGAACAAGAAATGAGACAGGACAATCATCAAGAAGAAGCTGTAGAGATGGAACAAGAAATGAGACAGGACAATCATCAAGAAGAAGCTGTTGCAAAAGAATCTTCTGGCAATCAACAAAGAGCAGTTGGTGAAAGTAATGTTCAAATTAATTGTTCTGACTCGGATCAAGGGGGATTGACTGATCTTGAGAAACTGTTGAAGCATAAGACTTTCACCAGGCATGTTTTGTATCCTGTTCCTATTGAGGATGTTGCTTCACCTGTAGAGCTTGCAAAAGCTTACATGGGGAGCAGGCAATCCAATGTATCCTCATCAATGCTAGGCGTGCGATATCCTGCTCGTAGGGAAGACACAACTCCTCTAAAAAGTGAAAAATCTCCGGGGCGGGCTTGCTGTTCATGGCGAGCCTTCGTCTTCACCCAGTCTGCAATGGATCATGCCATGTCACCGGATCTACACAAGGGTGCTCTATCTGTCTATAGGAACGGATTGGGTATTGAAGCTGCTCAGCAACCCTCATCTTCCTTGCATAAGCCTGTTCTGCTAGATAAAGTTAAGCACAAGTCCGAAGAAAACGCTCTTCGAAGCTTGGAAATGGTAGATGCGTCAAAATTGCCGGACAGTTTACAAGGAAATAATTTGGATGGCACATTTGGAAATTTTACTTCCAGTGCTCAGAATCAGAAGTCAATTTCACATAGAGATAAGGGTGAAAACAGTCCATTGAAACTTGTTGCTTCTTCCAATGAATCGGTTCCTATTGTAACCACTACAGAGACCACAAAGTCAAGCAATCAAGTCTTGTCTAGTGAAAATTCTTTTATGATGAAATCGGTTTCTAACCCTACACAAAAGAAGCGAGCATTCCATATGAGTGCACACGAGAGCCGTCTCTTTTCTTCTGCGGAAAAAGAATCAAAAAGCGCCATTGTTATTGCGGACAAAGTTTCTTCTGGTTCTGAAGCCATGCACATGAAAGTCCCTCAACATCATCTGTGTTGCAGTTACAGCACCTACAATAACAACTTTTGGTCTGACAAGCCTGCTTTACCAAATGGGTCAACTGCTAATCCTTCTTTGTTTAATTTTTCTATTGGTGGTGAGTCTACTCCGAAATTTGGTGCTTCTTTTGACTCTCAGCCGGGAGGATCAATCAGGTTAGTCTATGTTTCTTTACTTACTACTGTTGCTGGTTCAACTGGTTCTATGCAAAAAGTTTGTGAATCTGATAGTGGTGATGCTGGGACTGATAAAAATACGGATTTTCTGTTAGGGCATCGGAACTAG

Protein sequence

>MsG0180004954.01.T01

LICGFYDAGLEQEMRQDNHQEEAVEMEQEMRQDNHQEEAVAKESSGNQQRAVGESNVQINCSDSDQGGLTDLEKLLKHKTFTRHVLYPVPIEDVASPVELAKAYMGSRQSNVSSSMLGVRYPARREDTTPLKSEKSPGRACCSWRAFVFTQSAMDHAMSPDLHKGALSVYRNGLGIEAAQQPSSSLHKPVLLDKVKHKSEENALRSLEMVDASKLPDSLQGNNLDGTFGNFTSSAQNQKSISHRDKGENSPLKLVASSNESVPIVTTTETTKSSNQVLSSENSFMMKSVSNPTQKKRAFHMSAHESRLFSSAEKESKSAIVIADKVSSGSEAMHMKVPQHHLCCSYSTYNNNFWSDKPALPNGSTANPSLFNFSIGGESTPKFGASFDSQPGGSIRLVYVSLLTTVAGSTGSMQKVCESDSGDAGTDKNTDFLLGHRN*