AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022939.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022939.01.T01 MTR_8g080240 98.653 297 4 0 164 460 94 390 0.0 606
MsG0480022939.01.T01 MTR_8g080240 91.549 71 6 0 13 83 1 71 1.31e-31 128
MsG0480022939.01.T01 MTR_8g080240 98.653 297 4 0 164 460 94 390 0.0 605
MsG0480022939.01.T01 MTR_8g080240 91.549 71 6 0 13 83 1 71 2.37e-31 127
MsG0480022939.01.T01 MTR_8g080240 98.653 297 4 0 164 460 94 390 0.0 604
MsG0480022939.01.T01 MTR_8g080240 91.549 71 6 0 13 83 1 71 2.15e-31 127
MsG0480022939.01.T01 MTR_3g052610 39.130 460 240 12 11 460 49 478 8.33e-97 306
MsG0480022939.01.T01 MTR_3g023880 50.974 308 145 4 154 459 493 796 7.55e-96 311
MsG0480022939.01.T01 MTR_3g023880 50.000 80 36 2 7 83 404 482 3.11e-14 75.9
MsG0480022939.01.T01 MTR_1g114490 49.669 302 148 3 164 465 594 891 9.56e-96 313
MsG0480022939.01.T01 MTR_6g061840 50.676 296 144 2 164 459 348 641 1.48e-95 305
MsG0480022939.01.T01 MTR_6g061840 46.914 81 38 2 7 83 246 325 3.42e-13 72.4
MsG0480022939.01.T01 MTR_1g023985 49.338 302 149 3 164 465 663 960 1.91e-95 313
MsG0480022939.01.T01 MTR_1g023985 47.945 73 35 1 10 79 564 636 3.38e-13 72.8
MsG0480022939.01.T01 MTR_6g061840 50.676 296 144 2 164 459 348 641 1.38e-94 305
MsG0480022939.01.T01 MTR_6g061840 46.914 81 38 2 7 83 246 325 4.00e-13 72.4
MsG0480022939.01.T01 MTR_5g075310 52.313 281 130 3 164 443 303 580 2.45e-93 300
MsG0480022939.01.T01 MTR_5g075310 51.948 77 32 2 7 79 201 276 4.49e-14 75.1
MsG0480022939.01.T01 MTR_4g485610 48.355 304 146 4 164 460 118 417 5.23e-93 296
MsG0480022939.01.T01 MTR_1g086640 47.869 305 146 5 164 460 156 455 4.57e-92 294
MsG0480022939.01.T01 MTR_3g054400 49.833 299 144 3 164 459 461 756 7.85e-91 298
MsG0480022939.01.T01 MTR_3g054400 44.156 77 40 1 11 84 363 439 8.27e-13 71.2
MsG0480022939.01.T01 MTR_2g098440 49.164 299 146 3 164 459 664 959 4.58e-89 295
MsG0480022939.01.T01 MTR_2g098440 44.156 77 40 1 11 84 566 642 1.21e-12 70.9
MsG0480022939.01.T01 MTR_2g015320 43.949 314 155 4 164 460 148 457 2.49e-81 266
MsG0480022939.01.T01 MTR_6g061840 51.867 241 114 2 164 404 348 586 1.72e-78 255
MsG0480022939.01.T01 MTR_6g061840 46.914 81 38 2 7 83 246 325 4.07e-13 72.0
MsG0480022939.01.T01 MTR_7g095080 40.533 338 156 4 164 460 142 475 3.81e-78 258
MsG0480022939.01.T01 MTR_3g014030 40.557 323 167 8 148 460 343 650 4.38e-58 207
MsG0480022939.01.T01 MTR_8g041990 39.146 281 124 3 179 459 183 416 2.74e-57 200
MsG0480022939.01.T01 MTR_8g041990 49.351 77 34 2 7 79 98 173 7.07e-13 71.2
MsG0480022939.01.T01 MTR_0267s0070 40.308 325 167 9 148 460 996 1305 6.10e-57 204
MsG0480022939.01.T01 MTR_3g086770 39.103 312 164 8 160 460 355 651 8.36e-56 201
MsG0480022939.01.T01 MTR_4g094992 40.157 254 140 5 214 460 21 269 4.11e-55 192
MsG0480022939.01.T01 MTR_1543s0010 49.102 167 75 2 293 459 1 157 6.81e-39 143
MsG0480022939.01.T01 MTR_4g023590 30.982 326 132 6 10 300 266 533 3.55e-37 145
MsG0480022939.01.T01 MTR_4g023590 42.754 138 79 0 316 453 693 830 1.76e-28 119
MsG0480022939.01.T01 MTR_1g109170 40.107 187 108 2 273 459 600 782 3.90e-32 130
MsG0480022939.01.T01 MTR_1g109170 29.344 259 116 5 5 255 317 516 1.32e-21 99.0
MsG0480022939.01.T01 MTR_1g109170 40.107 187 108 2 273 459 600 782 3.94e-32 130
MsG0480022939.01.T01 MTR_1g109170 29.344 259 116 5 5 255 317 516 1.28e-21 99.0
MsG0480022939.01.T01 MTR_5g090430 37.368 190 101 3 274 463 547 718 1.80e-31 129
MsG0480022939.01.T01 MTR_5g090430 34.579 107 58 3 160 255 278 383 2.68e-11 66.6
MsG0480022939.01.T01 MTR_1g056490 46.667 165 84 2 281 445 506 666 2.26e-31 128
MsG0480022939.01.T01 MTR_1g056490 27.311 238 117 7 16 251 231 414 1.14e-15 80.5
MsG0480022939.01.T01 MTR_5g090430 37.368 190 101 3 274 463 434 605 2.31e-31 128
MsG0480022939.01.T01 MTR_5g090430 34.579 107 58 3 160 255 165 270 2.56e-11 66.6
MsG0480022939.01.T01 MTR_8g106630 39.881 168 97 2 281 448 554 717 3.91e-29 121
MsG0480022939.01.T01 MTR_8g106630 28.185 259 119 5 5 255 261 460 4.11e-19 91.3
MsG0480022939.01.T01 MTR_4g134790 41.566 166 94 2 280 445 905 1067 6.05e-29 121
MsG0480022939.01.T01 MTR_4g134790 41.566 166 94 2 280 445 908 1070 6.05e-29 121
MsG0480022939.01.T01 MTR_1g088590 28.099 484 258 18 8 452 22 454 6.58e-29 120
MsG0480022939.01.T01 MTR_4g120070 42.754 138 79 0 316 453 619 756 9.78e-29 120
MsG0480022939.01.T01 MTR_4g120070 38.621 145 63 3 182 300 315 459 1.04e-19 93.2
MsG0480022939.01.T01 MTR_8g045110 35.484 186 116 2 274 459 109 290 1.34e-28 119
MsG0480022939.01.T01 MTR_8g044260 37.968 187 109 4 262 448 513 692 3.32e-22 100
MsG0480022939.01.T01 MTR_8g044260 28.958 259 117 6 5 255 237 436 7.03e-19 90.5
MsG0480022939.01.T01 MTR_3g055020 54.023 87 38 1 373 459 49 133 5.28e-20 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022939.01.T01 AT1G27900 83.946 299 48 0 164 462 97 395 0.0 541
MsG0480022939.01.T01 AT1G27900 73.077 78 14 2 13 83 1 78 2.29e-25 110
MsG0480022939.01.T01 AT1G27900 83.946 299 48 0 164 462 97 395 0.0 540
MsG0480022939.01.T01 AT1G27900 73.077 78 14 2 13 83 1 78 1.59e-25 109
MsG0480022939.01.T01 AT1G27900 83.946 299 48 0 164 462 97 395 0.0 539
MsG0480022939.01.T01 AT1G27900 73.077 78 14 2 13 83 1 78 1.95e-25 109
MsG0480022939.01.T01 AT3G26560 50.000 296 144 3 164 459 608 899 6.31e-97 316
MsG0480022939.01.T01 AT3G26560 47.945 73 35 1 10 79 509 581 3.20e-13 72.8
MsG0480022939.01.T01 AT2G35340 49.338 302 149 3 164 465 359 656 1.11e-96 311
MsG0480022939.01.T01 AT2G35340 48.000 75 35 2 8 79 259 332 3.55e-13 72.4
MsG0480022939.01.T01 AT2G35340 49.338 302 149 3 164 465 497 794 5.79e-96 311
MsG0480022939.01.T01 AT2G35340 45.570 79 39 2 8 83 397 474 3.52e-13 72.4
MsG0480022939.01.T01 AT3G62310 48.065 310 148 5 164 465 160 464 1.17e-95 299
MsG0480022939.01.T01 AT1G32490 48.089 314 157 4 154 465 485 794 2.21e-95 310
MsG0480022939.01.T01 AT1G32490 45.833 72 36 1 15 83 403 474 6.01e-13 72.0
MsG0480022939.01.T01 AT1G32490 48.089 314 157 4 154 465 475 784 2.33e-95 310
MsG0480022939.01.T01 AT1G32490 45.833 72 36 1 15 83 393 464 6.31e-13 71.6
MsG0480022939.01.T01 AT3G62310 48.852 305 143 5 164 460 160 459 4.13e-95 298
MsG0480022939.01.T01 AT2G47250 48.026 304 147 4 164 460 164 463 1.90e-93 298
MsG0480022939.01.T01 AT3G62310 48.065 310 148 5 164 465 160 464 1.95e-93 298
MsG0480022939.01.T01 AT5G13010 50.502 299 142 3 164 459 651 946 2.67e-92 304
MsG0480022939.01.T01 AT5G13010 44.156 77 40 1 11 84 553 629 5.97e-13 72.0
MsG0480022939.01.T01 AT4G18465 35.849 477 224 9 10 465 42 457 6.00e-89 286
MsG0480022939.01.T01 AT4G16680 49.832 297 139 5 164 459 308 595 1.44e-87 281
MsG0480022939.01.T01 AT4G16680 52.239 67 29 1 16 79 215 281 7.39e-13 71.2
MsG0480022939.01.T01 AT4G16680 49.832 297 139 5 164 459 228 515 3.13e-86 281
MsG0480022939.01.T01 AT4G16680 52.239 67 29 1 16 79 135 201 6.40e-13 71.6
MsG0480022939.01.T01 AT1G26370 41.026 351 157 6 154 460 123 467 5.87e-77 254
MsG0480022939.01.T01 AT1G26370 47.945 73 34 1 11 79 36 108 3.85e-14 75.5
MsG0480022939.01.T01 AT5G10370 37.061 456 203 12 16 459 306 689 4.81e-68 236
MsG0480022939.01.T01 AT4G01020 35.590 458 207 10 16 459 303 686 6.37e-67 233
MsG0480022939.01.T01 AT2G35920 45.238 168 88 2 281 448 446 609 4.20e-36 142
MsG0480022939.01.T01 AT2G35920 27.686 242 119 6 16 255 170 357 3.50e-17 85.1
MsG0480022939.01.T01 AT2G35920 45.238 168 88 2 281 448 536 699 4.67e-36 142
MsG0480022939.01.T01 AT2G35920 27.686 242 119 6 16 255 260 447 2.53e-17 85.5
MsG0480022939.01.T01 AT2G35920 45.238 168 88 2 281 448 504 667 5.78e-36 142
MsG0480022939.01.T01 AT2G35920 27.686 242 119 6 16 255 228 415 3.18e-17 85.1
MsG0480022939.01.T01 AT2G30800 42.308 182 98 5 280 459 208 384 3.92e-33 133
MsG0480022939.01.T01 AT2G30800 42.308 182 98 5 280 459 551 727 5.44e-33 133
MsG0480022939.01.T01 AT2G30800 34.375 96 59 2 163 255 282 376 2.21e-11 67.0
MsG0480022939.01.T01 AT1G33390 42.759 145 83 0 317 461 649 793 6.82e-32 130
MsG0480022939.01.T01 AT1G33390 39.535 172 77 4 163 307 339 510 3.16e-26 113
MsG0480022939.01.T01 AT1G33390 42.759 145 83 0 317 461 649 793 6.82e-32 130
MsG0480022939.01.T01 AT1G33390 39.535 172 77 4 163 307 339 510 3.16e-26 113
MsG0480022939.01.T01 AT1G58050 39.779 181 106 2 280 460 882 1059 1.66e-31 129
MsG0480022939.01.T01 AT1G58050 35.294 119 67 3 144 255 676 791 2.17e-14 76.6
MsG0480022939.01.T01 AT2G01130 40.642 187 107 3 273 459 426 608 3.57e-31 127
MsG0480022939.01.T01 AT2G01130 42.222 90 51 1 166 255 254 342 1.57e-12 70.5
MsG0480022939.01.T01 AT2G01130 40.642 187 107 3 273 459 491 673 5.94e-31 127
MsG0480022939.01.T01 AT2G01130 42.222 90 51 1 166 255 319 407 1.81e-12 70.5
MsG0480022939.01.T01 AT1G06670 40.541 185 97 6 280 459 575 751 7.66e-31 127
MsG0480022939.01.T01 AT1G06670 40.541 185 97 6 280 459 575 751 8.07e-31 127
MsG0480022939.01.T01 AT1G58060 40.884 181 104 2 280 460 915 1092 1.08e-28 120
MsG0480022939.01.T01 AT1G58060 29.508 305 131 9 15 291 613 861 1.30e-25 111
MsG0480022939.01.T01 AT1G48650 41.667 168 94 2 281 448 579 742 4.69e-24 106
MsG0480022939.01.T01 AT1G48650 40.000 90 53 1 166 255 398 486 1.89e-12 70.5
MsG0480022939.01.T01 AT1G48650 41.667 168 94 2 281 448 579 742 5.12e-24 106
MsG0480022939.01.T01 AT1G48650 40.000 90 53 1 166 255 398 486 1.84e-12 70.5
MsG0480022939.01.T01 AT2G47680 29.907 321 165 13 164 440 116 420 3.12e-23 103
MsG0480022939.01.T01 AT5G04895 37.433 187 110 4 262 448 524 703 2.76e-21 97.8
MsG0480022939.01.T01 AT5G04895 27.823 248 113 5 15 255 259 447 5.56e-21 97.1

Find 108 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGATCTCTGAATTTC+AGG 0.221026 4:+78819761 None:intergenic
AAAACTCATCATGGTAGATT+TGG 0.235724 4:+78819798 None:intergenic
AGGTTGAGTGACGGCGATTT+TGG 0.260135 4:+78823896 None:intergenic
TGATTATTCTGTTATCATAT+TGG 0.265028 4:-78823523 MsG0480022939.01.T01:CDS
TTCTTTGCCACCTGAATTGC+AGG 0.290325 4:-78822029 MsG0480022939.01.T01:intron
AGAGAAGTTGGTATCGAAAA+TGG 0.292258 4:-78822116 MsG0480022939.01.T01:CDS
GAAACTTCTTTGACTGTTGA+TGG 0.296524 4:-78821145 MsG0480022939.01.T01:CDS
AAACTACTTACCTGCAATTC+AGG 0.306522 4:+78822019 None:intergenic
ACCGTCATCATCGGCGAAAC+TGG 0.310099 4:-78823969 MsG0480022939.01.T01:CDS
TCATTCAATTCGATTCGATT+AGG 0.347251 4:-78823599 MsG0480022939.01.T01:CDS
CGATAATCTTCTCTTCGTAT+TGG 0.362901 4:+78824015 None:intergenic
ATCACGTCTGCTACGCTTGA+TGG 0.382982 4:-78823004 MsG0480022939.01.T01:CDS
ACAGAATAATCATTTAGTTC+AGG 0.383159 4:+78823534 None:intergenic
TTCAATGCTTCATTCTCAAT+TGG 0.383837 4:-78823655 MsG0480022939.01.T01:CDS
AATCAGCGGGCAGGCAGAGC+TGG 0.388281 4:-78819860 MsG0480022939.01.T01:CDS
ATTCAGAGATCTTCTCTTGC+CGG 0.389210 4:-78819755 MsG0480022939.01.T01:CDS
AATTTGAGAATGTCAATATC+AGG 0.389242 4:+78819701 None:intergenic
TTCTCTTCGTATTGGACAAT+GGG 0.390504 4:+78824023 None:intergenic
CGTGATCAACACTTTGAGAT+TGG 0.400268 4:+78823021 None:intergenic
AAACTCATCATGGTAGATTT+GGG 0.402001 4:+78819799 None:intergenic
GGTAGATTTGGGAAGGATAT+AGG 0.402863 4:+78819810 None:intergenic
CAGGATCAGCTAAACTTTCT+CGG 0.411463 4:+78823553 None:intergenic
TGTGCTTTACTTGAAGTCAT+TGG 0.426699 4:-78819729 MsG0480022939.01.T01:CDS
AATATTAAAATATCCCCTTC+CGG 0.429939 4:+78822278 None:intergenic
AGGGAATACATCCTACTAGA+TGG 0.438107 4:+78820326 None:intergenic
AGAGAGTTGAGTGCTCTTAC+CGG 0.447416 4:+78823944 None:intergenic
TTTAATATTCATGACTGGAC+AGG 0.450741 4:-78822264 MsG0480022939.01.T01:intron
TGCCCGGTATTGAACATCCC+TGG 0.463782 4:-78822953 MsG0480022939.01.T01:CDS
GGTTAGTTGGAGAGTTGAAA+GGG 0.465946 4:+78823830 None:intergenic
AAACGATGTCGTCGTCCGCT+AGG 0.466258 4:+78823808 None:intergenic
AACTCCATCACCGTCATCAT+CGG 0.470194 4:-78823978 MsG0480022939.01.T01:CDS
TGTAGGTATGTTATTGACTC+TGG 0.476404 4:-78820374 MsG0480022939.01.T01:intron
GGAGAAGAACACCGTCAGTT+AGG 0.477742 4:+78823574 None:intergenic
AGAGCTGGACGAACACGACC+AGG 0.477884 4:-78819845 MsG0480022939.01.T01:CDS
AGATATACATACACGTCAAC+CGG 0.479236 4:-78822297 MsG0480022939.01.T01:CDS
GCTATAATCTTTCCTCTACA+TGG 0.484437 4:-78822052 MsG0480022939.01.T01:CDS
CGTCGTCCGCTAGGGTTAGT+TGG 0.485282 4:+78823817 None:intergenic
GATGGGGCTTATGAAACGTT+TGG 0.490805 4:-78823059 MsG0480022939.01.T01:CDS
ACAATGATTCGTCTGCAATT+CGG 0.495527 4:+78821184 None:intergenic
GCAGGATGACATAGAGAAGT+TGG 0.496109 4:-78822128 MsG0480022939.01.T01:intron
AACGATGTCGTCGTCCGCTA+GGG 0.496505 4:+78823809 None:intergenic
GTGTTCAGAGATATATTGAT+GGG 0.500780 4:-78823076 MsG0480022939.01.T01:intron
TGTGTTCAGAGATATATTGA+TGG 0.502050 4:-78823077 MsG0480022939.01.T01:intron
TTCCCAGGGATGTTCAATAC+CGG 0.503076 4:+78822950 None:intergenic
TCGCTGCCGTCTCCGTCTCT+AGG 0.503761 4:-78823866 MsG0480022939.01.T01:CDS
GGGTTAGTTGGAGAGTTGAA+AGG 0.503912 4:+78823829 None:intergenic
CTTCTCTTCGTATTGGACAA+TGG 0.506058 4:+78824022 None:intergenic
CTTTCTTCTTTGAGACCAGC+CGG 0.509910 4:+78824059 None:intergenic
AAAGTCCGTGCTCTCGATGA+AGG 0.515093 4:-78822088 MsG0480022939.01.T01:CDS
TGCTAATTTGAACAACATCA+AGG 0.516042 4:+78820306 None:intergenic
TGGGAAGTTGTATCCTGTTG+AGG 0.516108 4:-78822933 MsG0480022939.01.T01:CDS
GCAGCTCTTAAAACAGCTCT+TGG 0.525526 4:-78822872 MsG0480022939.01.T01:intron
GTGCAAGCTAATCAGCGGGC+AGG 0.526117 4:-78819869 MsG0480022939.01.T01:CDS
CGTCTGCAATTCGGAGGTGG+AGG 0.532433 4:+78821193 None:intergenic
GCCCGGTATTGAACATCCCT+GGG 0.534266 4:-78822952 MsG0480022939.01.T01:CDS
ATCATCGGCGAAACTGGTTC+CGG 0.539030 4:-78823963 MsG0480022939.01.T01:CDS
CAAGAGCTCGGTGTTCAACT+CGG 0.548206 4:-78823754 MsG0480022939.01.T01:CDS
TCAACAGGATACAACTTCCC+AGG 0.549394 4:+78822935 None:intergenic
GTTCAACTCGGAGAAGAAGT+TGG 0.554535 4:-78823742 MsG0480022939.01.T01:CDS
GAAGTTCTTTCGAGATTGCC+CGG 0.554903 4:-78822969 MsG0480022939.01.T01:CDS
TTCGCCGATGATGACGGTGA+TGG 0.556054 4:+78823974 None:intergenic
GTAGGTATGTTATTGACTCT+GGG 0.558149 4:-78820373 MsG0480022939.01.T01:intron
ATTCGTCTGCAATTCGGAGG+TGG 0.558572 4:+78821190 None:intergenic
ACATACACGTCAACCGGAAG+GGG 0.558616 4:-78822291 MsG0480022939.01.T01:CDS
GGCAGTACAATCCATCTAGT+AGG 0.558951 4:-78820337 MsG0480022939.01.T01:CDS
TATAGGCGGTAGCATTTCCC+TGG 0.560212 4:+78819827 None:intergenic
TGGTCTCAAAGAAGAAAGAA+TGG 0.560283 4:-78824054 MsG0480022939.01.T01:CDS
CAGAGTGCAAGCTAATCAGC+GGG 0.560667 4:-78819873 MsG0480022939.01.T01:CDS
GCTCTTGAGCAACTCGTCTG+TGG 0.560821 4:+78823770 None:intergenic
GCTAATTTGAACAACATCAA+GGG 0.564002 4:+78820307 None:intergenic
TCTTACATGACGGAGAATCA+AGG 0.568294 4:+78819672 None:intergenic
AGACGAGTTGCTCAAGAGCT+CGG 0.568585 4:-78823766 MsG0480022939.01.T01:CDS
TTGAGCAACTCGTCTGTGGA+AGG 0.569230 4:+78823774 None:intergenic
AGACGGAGACGGCAGCGACA+CGG 0.577742 4:+78823871 None:intergenic
GATCAACACTTTGAGATTGG+AGG 0.580177 4:+78823024 None:intergenic
TACATACACGTCAACCGGAA+GGG 0.587913 4:-78822292 MsG0480022939.01.T01:CDS
CTTCTTTGAGACCAGCCGGT+GGG 0.588354 4:+78824063 None:intergenic
ACCAGTTTCGCCGATGATGA+CGG 0.589207 4:+78823968 None:intergenic
AAAGATTATAGCATCCATGC+AGG 0.593499 4:+78822063 None:intergenic
TCTTCTTTGAGACCAGCCGG+TGG 0.593760 4:+78824062 None:intergenic
TCCCAGGGATGTTCAATACC+GGG 0.594092 4:+78822951 None:intergenic
CTTCAAGTAAAGCACACTGC+CGG 0.599828 4:+78819736 None:intergenic
ATTTGAGAATGTCAATATCA+GGG 0.599951 4:+78819702 None:intergenic
AGGAACCTTCATCGAGAGCA+CGG 0.613591 4:+78822083 None:intergenic
TCATCATGGTAGATTTGGGA+AGG 0.615990 4:+78819803 None:intergenic
GTTAGTTGGAGAGTTGAAAG+GGG 0.618886 4:+78823831 None:intergenic
AACTGATACAAACCTAGAGA+CGG 0.623130 4:+78823854 None:intergenic
ATACATACACGTCAACCGGA+AGG 0.625733 4:-78822293 MsG0480022939.01.T01:CDS
AGTTCTGTCTTCGAATCGAA+TGG 0.626677 4:+78823714 None:intergenic
TATTGGATGAAGCTCATGAA+CGG 0.628492 4:-78823506 MsG0480022939.01.T01:CDS
CAACAGGATACAACTTCCCA+GGG 0.638137 4:+78822936 None:intergenic
TCTCGATGAAGGTTCCTGCA+TGG 0.639314 4:-78822077 MsG0480022939.01.T01:CDS
TGTTCAGAGATATATTGATG+GGG 0.645124 4:-78823075 MsG0480022939.01.T01:intron
GCAGAGTGCAAGCTAATCAG+CGG 0.651665 4:-78819874 MsG0480022939.01.T01:intron
GAGCTGGACGAACACGACCA+GGG 0.653654 4:-78819844 MsG0480022939.01.T01:CDS
GCTGCATCGAGATAGTTCAC+AGG 0.657754 4:+78822890 None:intergenic
CTACTTACCTGCAATTCAGG+TGG 0.661348 4:+78822022 None:intergenic
ATGATTCGTCTGCAATTCGG+AGG 0.666032 4:+78821187 None:intergenic
GGTGGCAAAGAACCATGTAG+AGG 0.666304 4:+78822040 None:intergenic
GAGACGGCAGCGACACGGCG+AGG 0.680027 4:+78823876 None:intergenic
ACTCTGGGTATGTAAAGCAG+AGG 0.685103 4:-78820358 MsG0480022939.01.T01:CDS
TACAAACCTAGAGACGGAGA+CGG 0.685691 4:+78823860 None:intergenic
TCGATTAGGTACCTAACTGA+CGG 0.689116 4:-78823585 MsG0480022939.01.T01:CDS
AACTCTCCAACTAACCCTAG+CGG 0.694939 4:-78823823 MsG0480022939.01.T01:CDS
GACACGGCGAGGTTGAGTGA+CGG 0.697701 4:+78823887 None:intergenic
TCTCAGATGCTTCACCGCCG+CGG 0.701620 4:-78823924 MsG0480022939.01.T01:CDS
AGATTTGGGAAGGATATAGG+CGG 0.722184 4:+78819813 None:intergenic
TGAGAATGTCAATATCAGGG+AGG 0.762249 4:+78819705 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATTAAAGAAAATTTG+AGG - Chr4:78822454-78822473 MsG0480022939.01.T01:intron 10.0%
!! ATATTCAATAAATGAAATTT+AGG + Chr4:78822855-78822874 None:intergenic 10.0%
!! TATTATTAAAGAAAATTTGA+GGG - Chr4:78822455-78822474 MsG0480022939.01.T01:intron 10.0%
!! TATTCAATAAATGAAATTTA+GGG + Chr4:78822854-78822873 None:intergenic 10.0%
!! TTATCAATATGTAATAAAAA+AGG + Chr4:78821047-78821066 None:intergenic 10.0%
!!! GTAATAGTTTTTATAAAAAA+AGG - Chr4:78821808-78821827 MsG0480022939.01.T01:intron 10.0%
!! AATAATTTCATATCTTATTG+TGG - Chr4:78823460-78823479 MsG0480022939.01.T01:intron 15.0%
!! ACAAAATAAAACTTCATATA+TGG + Chr4:78823543-78823562 None:intergenic 15.0%
!! ATAAGATATGAAATTATTCA+TGG + Chr4:78823458-78823477 None:intergenic 15.0%
!! ATTGAATGTAATTATATTGT+TGG + Chr4:78820337-78820356 None:intergenic 15.0%
!! TAAATCAATTATGTGAATAT+TGG - Chr4:78822895-78822914 MsG0480022939.01.T01:CDS 15.0%
!!! ATTTTTTGTAATGATCAAAA+AGG - Chr4:78823122-78823141 MsG0480022939.01.T01:intron 15.0%
!!! CAATTATACTATTTTCTATA+AGG - Chr4:78820353-78820372 MsG0480022939.01.T01:CDS 15.0%
!!! TTACTTAATTTTATGAATGT+AGG - Chr4:78823341-78823360 MsG0480022939.01.T01:intron 15.0%
!!! TTTTTGATCATTACAAAAAA+TGG + Chr4:78823123-78823142 None:intergenic 15.0%
!! AACAAAAGAATTATAGACAT+TGG - Chr4:78823731-78823750 MsG0480022939.01.T01:CDS 20.0%
!! AATATATCAAACAACAACAA+TGG + Chr4:78822433-78822452 None:intergenic 20.0%
!! AATTATGTTAGAATGAAGAT+AGG + Chr4:78820905-78820924 None:intergenic 20.0%
!! ATAGAGTAAAGTTATTATAG+TGG + Chr4:78821516-78821535 None:intergenic 20.0%
!! ATATACAACACAATAAGAAA+TGG + Chr4:78821953-78821972 None:intergenic 20.0%
!! ATTATGTTAGAATGAAGATA+GGG + Chr4:78820904-78820923 None:intergenic 20.0%
!! GCTCTTTCTATAATTATTAT+AGG - Chr4:78820551-78820570 MsG0480022939.01.T01:intron 20.0%
!! GTGTAAATAAATTTGTAGTT+AGG - Chr4:78820987-78821006 MsG0480022939.01.T01:intron 20.0%
!! TACATCATAATAGAAACTAA+AGG + Chr4:78821555-78821574 None:intergenic 20.0%
!! TATAAAAAGATCTTACATGA+CGG + Chr4:78824073-78824092 None:intergenic 20.0%
!! TATAATACTTTATCTTCACA+AGG + Chr4:78822707-78822726 None:intergenic 20.0%
!! TATACAACACAATAAGAAAT+GGG + Chr4:78821952-78821971 None:intergenic 20.0%
!! TATCTTCATTCTAACATAAT+TGG - Chr4:78820904-78820923 MsG0480022939.01.T01:intron 20.0%
!! TATGTCAAATAGATATGTAA+CGG + Chr4:78821078-78821097 None:intergenic 20.0%
!! TGATTATTCTGTTATCATAT+TGG - Chr4:78820209-78820228 MsG0480022939.01.T01:intron 20.0%
!! TTTCATTTATTGAATATGTG+CGG - Chr4:78822858-78822877 MsG0480022939.01.T01:intron 20.0%
!!! AATTATAGACATTGGTTAAA+AGG - Chr4:78823739-78823758 MsG0480022939.01.T01:CDS 20.0%
!!! ATTTATAATTTCGCATTTTG+AGG - Chr4:78823163-78823182 MsG0480022939.01.T01:intron 20.0%
!!! CTTCTCATATATTTGAATTT+TGG - Chr4:78820602-78820621 MsG0480022939.01.T01:intron 20.0%
!!! GAAACTATTTCTATATTATC+TGG - Chr4:78822062-78822081 MsG0480022939.01.T01:CDS 20.0%
!!! GATATTTTAATATTCATGAC+TGG - Chr4:78821463-78821482 MsG0480022939.01.T01:intron 20.0%
!!! TATCACATGTAAAATTTTCT+TGG - Chr4:78822139-78822158 MsG0480022939.01.T01:intron 20.0%
!!! TATTTCTATATTATCTGGAA+AGG - Chr4:78822067-78822086 MsG0480022939.01.T01:CDS 20.0%
!!! TTATTTTGTTCAATATAGTG+TGG - Chr4:78823554-78823573 MsG0480022939.01.T01:CDS 20.0%
! AAAGAAATAGAATACATCAC+TGG + Chr4:78822995-78823014 None:intergenic 25.0%
! AATATTAAAATATCCCCTTC+CGG + Chr4:78821457-78821476 None:intergenic 25.0%
! AATTTGAGAATGTCAATATC+AGG + Chr4:78824034-78824053 None:intergenic 25.0%
! ATAAACACTCCAAATTACAA+TGG + Chr4:78823228-78823247 None:intergenic 25.0%
! ATACAACACAATAAGAAATG+GGG + Chr4:78821951-78821970 None:intergenic 25.0%
! ATATGATTATGAAGCAAACA+AGG + Chr4:78822337-78822356 None:intergenic 25.0%
! ATTTGAGAATGTCAATATCA+GGG + Chr4:78824033-78824052 None:intergenic 25.0%
! TAAACACTCCAAATTACAAT+GGG + Chr4:78823227-78823246 None:intergenic 25.0%
! TAATTTACCTCTCTTTAGTT+TGG - Chr4:78822095-78822114 MsG0480022939.01.T01:CDS 25.0%
! TCTATAAGGAAAAAGCTTTA+TGG - Chr4:78820367-78820386 MsG0480022939.01.T01:CDS 25.0%
! TGACTAAGACAAAAATAAAC+AGG + Chr4:78822796-78822815 None:intergenic 25.0%
! TTAGAGGATGAAAATATTGT+TGG - Chr4:78822933-78822952 MsG0480022939.01.T01:CDS 25.0%
!! ACAATATTTTCATCCTCTAA+TGG + Chr4:78822933-78822952 None:intergenic 25.0%
!! ACAGAATAATCATTTAGTTC+AGG + Chr4:78820201-78820220 None:intergenic 25.0%
!! ATATTACCTCTCTAAAAAAC+TGG - Chr4:78821103-78821122 MsG0480022939.01.T01:intron 25.0%
!! CAATATTTTCATCCTCTAAT+GGG + Chr4:78822932-78822951 None:intergenic 25.0%
!! CATGAGATTGCAAATTATTT+TGG - Chr4:78820444-78820463 MsG0480022939.01.T01:intron 25.0%
!! GTCATGTAAGATCTTTTTAT+AGG - Chr4:78824072-78824091 MsG0480022939.01.T01:CDS 25.0%
!!! GTGTTTTATCTGTTATTTCT+AGG - Chr4:78821988-78822007 MsG0480022939.01.T01:intron 25.0%
AAAACTCATCATGGTAGATT+TGG + Chr4:78823937-78823956 None:intergenic 30.0%
AAACTCATCATGGTAGATTT+GGG + Chr4:78823936-78823955 None:intergenic 30.0%
AGTGAATAAGACAGATGAAA+TGG + Chr4:78821366-78821385 None:intergenic 30.0%
ATGCATGTCTATAATCTTAC+AGG - Chr4:78822502-78822521 MsG0480022939.01.T01:intron 30.0%
ATTCCAAATACAATCAGTCA+AGG - Chr4:78821779-78821798 MsG0480022939.01.T01:intron 30.0%
GCTAATTTGAACAACATCAA+GGG + Chr4:78823428-78823447 None:intergenic 30.0%
GTGTTCAGAGATATATTGAT+GGG - Chr4:78820656-78820675 MsG0480022939.01.T01:intron 30.0%
TAAATGAAATTTAGGGACTC+AGG + Chr4:78822847-78822866 None:intergenic 30.0%
TCTTGAAACGATATTCATCT+AGG - Chr4:78822391-78822410 MsG0480022939.01.T01:intron 30.0%
TGCTAATTTGAACAACATCA+AGG + Chr4:78823429-78823448 None:intergenic 30.0%
TGTGTTCAGAGATATATTGA+TGG - Chr4:78820655-78820674 MsG0480022939.01.T01:intron 30.0%
TGTTCAGAGATATATTGATG+GGG - Chr4:78820657-78820676 MsG0480022939.01.T01:intron 30.0%
TTCAATGCTTCATTCTCAAT+TGG - Chr4:78820077-78820096 MsG0480022939.01.T01:intron 30.0%
TTTAATATTCATGACTGGAC+AGG - Chr4:78821468-78821487 MsG0480022939.01.T01:intron 30.0%
! AATCTACCATGATGAGTTTT+TGG - Chr4:78823937-78823956 MsG0480022939.01.T01:CDS 30.0%
! AGTTGATGTGCTTTATCTAA+AGG + Chr4:78823293-78823312 None:intergenic 30.0%
! TCATTCAATTCGATTCGATT+AGG - Chr4:78820133-78820152 MsG0480022939.01.T01:intron 30.0%
!! ATGTGTGTTTGCTTTTCTTT+TGG - Chr4:78823047-78823066 MsG0480022939.01.T01:CDS 30.0%
!! TATGGTTTGCTTGTGTATAA+AGG + Chr4:78823525-78823544 None:intergenic 30.0%
AAACTACTTACCTGCAATTC+AGG + Chr4:78821716-78821735 None:intergenic 35.0%
AAAGATTATAGCATCCATGC+AGG + Chr4:78821672-78821691 None:intergenic 35.0%
AACTGATACAAACCTAGAGA+CGG + Chr4:78819881-78819900 None:intergenic 35.0%
ACAATGATTCGTCTGCAATT+CGG + Chr4:78822551-78822570 None:intergenic 35.0%
AGAGAAGATCTCTGAATTTC+AGG + Chr4:78823974-78823993 None:intergenic 35.0%
AGATATACATACACGTCAAC+CGG - Chr4:78821435-78821454 MsG0480022939.01.T01:intron 35.0%
AGTCGAAATAGGAAAGAACT+AGG + Chr4:78822305-78822324 None:intergenic 35.0%
ATACATGTCCAACATGGATA+AGG + Chr4:78821875-78821894 None:intergenic 35.0%
ATGTAGACCAAACTAAAGAG+AGG + Chr4:78822105-78822124 None:intergenic 35.0%
CAATCTCATGAAAGATCCTA+CGG + Chr4:78820434-78820453 None:intergenic 35.0%
CGATAATCTTCTCTTCGTAT+TGG + Chr4:78819720-78819739 None:intergenic 35.0%
CTTCCTTGACTGATTGTATT+TGG + Chr4:78821785-78821804 None:intergenic 35.0%
GAAACTTCTTTGACTGTTGA+TGG - Chr4:78822587-78822606 MsG0480022939.01.T01:intron 35.0%
GCTATAATCTTTCCTCTACA+TGG - Chr4:78821680-78821699 MsG0480022939.01.T01:intron 35.0%
GGCATAGCTATAATACTACA+TGG + Chr4:78821898-78821917 None:intergenic 35.0%
TAACGTCCAAAAACTCATCA+TGG + Chr4:78823946-78823965 None:intergenic 35.0%
TATTGGATGAAGCTCATGAA+CGG - Chr4:78820226-78820245 MsG0480022939.01.T01:intron 35.0%
TGAATTCGCCCATTGTAATT+TGG - Chr4:78823216-78823235 MsG0480022939.01.T01:intron 35.0%
TGGTCTAAGCTATTGAAAAG+AGG - Chr4:78821123-78821142 MsG0480022939.01.T01:intron 35.0%
TGGTCTCAAAGAAGAAAGAA+TGG - Chr4:78819678-78819697 MsG0480022939.01.T01:CDS 35.0%
TGTCATTGAATCATCTTGAG+AGG - Chr4:78822273-78822292 MsG0480022939.01.T01:CDS 35.0%
TGTGCTTTACTTGAAGTCAT+TGG - Chr4:78824003-78824022 MsG0480022939.01.T01:CDS 35.0%
TTACAATGGGCGAATTCAAA+TGG + Chr4:78823214-78823233 None:intergenic 35.0%
TTCAAGTAGGAAGTTAGTCA+AGG - Chr4:78821299-78821318 MsG0480022939.01.T01:intron 35.0%
TTCTCTTCGTATTGGACAAT+GGG + Chr4:78819712-78819731 None:intergenic 35.0%
TTGCTAAAAAGAACCTCAAC+AGG + Chr4:78820815-78820834 None:intergenic 35.0%
TTTGAAAAACCGCATGCAAT+AGG - Chr4:78823024-78823043 MsG0480022939.01.T01:CDS 35.0%
! AACGAATTAATAAGTGCCGT+AGG - Chr4:78820415-78820434 MsG0480022939.01.T01:intron 35.0%
! CGAAAACTCTGGAAAATTAC+AGG + Chr4:78821925-78821944 None:intergenic 35.0%
! TTTCTTCCAGTTTTTCACGA+GGG - Chr4:78821401-78821420 MsG0480022939.01.T01:intron 35.0%
!! AGAGAAGTTGGTATCGAAAA+TGG - Chr4:78821616-78821635 MsG0480022939.01.T01:intron 35.0%
!! AGTTTTGATGAGCTATATGC+AGG - Chr4:78821586-78821605 MsG0480022939.01.T01:intron 35.0%
!! CTAAAGTGTCGGTGTTATAA+AGG + Chr4:78820277-78820296 None:intergenic 35.0%
!! GTAGGTATGTTATTGACTCT+GGG - Chr4:78823359-78823378 MsG0480022939.01.T01:intron 35.0%
!! TGTAGGTATGTTATTGACTC+TGG - Chr4:78823358-78823377 MsG0480022939.01.T01:intron 35.0%
!! TGTTGAGGTTCTTTTTAGCA+AGG - Chr4:78820814-78820833 MsG0480022939.01.T01:intron 35.0%
!!! CTTAGACCAGTTTTTTAGAG+AGG + Chr4:78821112-78821131 None:intergenic 35.0%
!!! GGTGATGGAGTTTTTTTCTA+CGG + Chr4:78819746-78819765 None:intergenic 35.0%
!!! TGGCTGATAACTTTTCAAGT+AGG - Chr4:78821286-78821305 MsG0480022939.01.T01:intron 35.0%
AAATGGGGATACGAAAACTC+TGG + Chr4:78821936-78821955 None:intergenic 40.0%
AAATTCCTTCACGTGTCATC+AGG - Chr4:78822219-78822238 MsG0480022939.01.T01:intron 40.0%
AACACACATCCTATTGCATG+CGG + Chr4:78823036-78823055 None:intergenic 40.0%
AATTCCTTCACGTGTCATCA+GGG - Chr4:78822220-78822239 MsG0480022939.01.T01:intron 40.0%
ACACCGACACTTTAGATTGA+AGG - Chr4:78820282-78820301 MsG0480022939.01.T01:intron 40.0%
ACATGGATACATGTCCAACA+TGG + Chr4:78821881-78821900 None:intergenic 40.0%
AGATTTGGGAAGGATATAGG+CGG + Chr4:78823922-78823941 None:intergenic 40.0%
AGGGAATACATCCTACTAGA+TGG + Chr4:78823409-78823428 None:intergenic 40.0%
AGTAAATAAGCTGCCAAGAG+AGG - Chr4:78821174-78821193 MsG0480022939.01.T01:CDS 40.0%
AGTTCTGTCTTCGAATCGAA+TGG + Chr4:78820021-78820040 None:intergenic 40.0%
ATCAGCCATTCAATCAGCAA+AGG + Chr4:78821274-78821293 None:intergenic 40.0%
ATTCAGAGATCTTCTCTTGC+CGG - Chr4:78823977-78823996 MsG0480022939.01.T01:CDS 40.0%
CAGGATCAGCTAAACTTTCT+CGG + Chr4:78820182-78820201 None:intergenic 40.0%
CTTCTCTTCGTATTGGACAA+TGG + Chr4:78819713-78819732 None:intergenic 40.0%
GCGAATTCAAATGGCAAGAA+GGG + Chr4:78823205-78823224 None:intergenic 40.0%
GGCAAGTAAGAAGTCGAAAT+AGG + Chr4:78822316-78822335 None:intergenic 40.0%
GGTAGATTTGGGAAGGATAT+AGG + Chr4:78823925-78823944 None:intergenic 40.0%
GTAAATAAGCTGCCAAGAGA+GGG - Chr4:78821175-78821194 MsG0480022939.01.T01:CDS 40.0%
GTATTGTGCCTTATCCATGT+TGG - Chr4:78821864-78821883 MsG0480022939.01.T01:intron 40.0%
GTTAGTTGGAGAGTTGAAAG+GGG + Chr4:78819904-78819923 None:intergenic 40.0%
TCATCATGGTAGATTTGGGA+AGG + Chr4:78823932-78823951 None:intergenic 40.0%
TCGATTAGGTACCTAACTGA+CGG - Chr4:78820147-78820166 MsG0480022939.01.T01:intron 40.0%
TGAGAATGTCAATATCAGGG+AGG + Chr4:78824030-78824049 None:intergenic 40.0%
! ACGCCTTCAATCTAAAGTGT+CGG + Chr4:78820288-78820307 None:intergenic 40.0%
! CTCTGGAAAATTACAGGACA+CGG + Chr4:78821919-78821938 None:intergenic 40.0%
! GGTTAGTTGGAGAGTTGAAA+GGG + Chr4:78819905-78819924 None:intergenic 40.0%
! GTTTCTTCCAGTTTTTCACG+AGG - Chr4:78821400-78821419 MsG0480022939.01.T01:intron 40.0%
! TCTTACATGACGGAGAATCA+AGG + Chr4:78824063-78824082 None:intergenic 40.0%
! TTCCTCCTTTGCTGATTGAA+TGG - Chr4:78821266-78821285 MsG0480022939.01.T01:intron 40.0%
!! ACTGTTGATGGTGTAGTGTA+AGG - Chr4:78822599-78822618 MsG0480022939.01.T01:intron 40.0%
!! AGGTTCTTTTTAGCAAGGAG+CGG - Chr4:78820819-78820838 MsG0480022939.01.T01:intron 40.0%
!! CGTGATCAACACTTTGAGAT+TGG + Chr4:78820714-78820733 None:intergenic 40.0%
!! CTGTTGATGGTGTAGTGTAA+GGG - Chr4:78822600-78822619 MsG0480022939.01.T01:intron 40.0%
!! GATCAACACTTTGAGATTGG+AGG + Chr4:78820711-78820730 None:intergenic 40.0%
AAAGATCCCATGCTCTTGCA+CGG - Chr4:78822170-78822189 MsG0480022939.01.T01:intron 45.0%
AACTCCATCACCGTCATCAT+CGG - Chr4:78819754-78819773 MsG0480022939.01.T01:CDS 45.0%
AACTCTCCAACTAACCCTAG+CGG - Chr4:78819909-78819928 MsG0480022939.01.T01:intron 45.0%
ACCAATCCCTCGTGAAAAAC+TGG + Chr4:78821410-78821429 None:intergenic 45.0%
ACTCTGGGTATGTAAAGCAG+AGG - Chr4:78823374-78823393 MsG0480022939.01.T01:intron 45.0%
AGAGAGTTGAGTGCTCTTAC+CGG + Chr4:78819791-78819810 None:intergenic 45.0%
AGCCATTCAATCAGCAAAGG+AGG + Chr4:78821271-78821290 None:intergenic 45.0%
ATACATACACGTCAACCGGA+AGG - Chr4:78821439-78821458 MsG0480022939.01.T01:intron 45.0%
ATGATTCGTCTGCAATTCGG+AGG + Chr4:78822548-78822567 None:intergenic 45.0%
ATTCCTTCACGTGTCATCAG+GGG - Chr4:78822221-78822240 MsG0480022939.01.T01:intron 45.0%
CAACAGGATACAACTTCCCA+GGG + Chr4:78820799-78820818 None:intergenic 45.0%
CTACTTACCTGCAATTCAGG+TGG + Chr4:78821713-78821732 None:intergenic 45.0%
CTTCAAGTAAAGCACACTGC+CGG + Chr4:78823999-78824018 None:intergenic 45.0%
GAAGTTAGTCAAGGCTGTCA+AGG - Chr4:78821308-78821327 MsG0480022939.01.T01:intron 45.0%
GAAGTTCTTTCGAGATTGCC+CGG - Chr4:78820763-78820782 MsG0480022939.01.T01:intron 45.0%
GATGGGGCTTATGAAACGTT+TGG - Chr4:78820673-78820692 MsG0480022939.01.T01:intron 45.0%
GCAGCTCTTAAAACAGCTCT+TGG - Chr4:78820860-78820879 MsG0480022939.01.T01:intron 45.0%
GCAGGATGACATAGAGAAGT+TGG - Chr4:78821604-78821623 MsG0480022939.01.T01:intron 45.0%
GGCAGTACAATCCATCTAGT+AGG - Chr4:78823395-78823414 MsG0480022939.01.T01:intron 45.0%
GGCGAATTCAAATGGCAAGA+AGG + Chr4:78823206-78823225 None:intergenic 45.0%
GGTTTGGGAAATGATGACAG+AGG - Chr4:78822192-78822211 MsG0480022939.01.T01:intron 45.0%
GTTAGTGTTGCACCCATTAG+AGG - Chr4:78822917-78822936 MsG0480022939.01.T01:CDS 45.0%
GTTCAACTCGGAGAAGAAGT+TGG - Chr4:78819990-78820009 MsG0480022939.01.T01:intron 45.0%
TACAAACCTAGAGACGGAGA+CGG + Chr4:78819875-78819894 None:intergenic 45.0%
TACATACACGTCAACCGGAA+GGG - Chr4:78821440-78821459 MsG0480022939.01.T01:intron 45.0%
TCAACAGGATACAACTTCCC+AGG + Chr4:78820800-78820819 None:intergenic 45.0%
TGGGAAGTTGTATCCTGTTG+AGG - Chr4:78820799-78820818 MsG0480022939.01.T01:intron 45.0%
TTCCCAGGGATGTTCAATAC+CGG + Chr4:78820785-78820804 None:intergenic 45.0%
TTCTTTGCCACCTGAATTGC+AGG - Chr4:78821703-78821722 MsG0480022939.01.T01:intron 45.0%
TTGAAAATGCCTCCCTCTCT+TGG + Chr4:78821190-78821209 None:intergenic 45.0%
! CAAGAGCATGGGATCTTTAC+TGG + Chr4:78822168-78822187 None:intergenic 45.0%
! TCCAGTTTTTCACGAGGGAT+TGG - Chr4:78821406-78821425 MsG0480022939.01.T01:intron 45.0%
!! CTTTCTTCTTTGAGACCAGC+CGG + Chr4:78819676-78819695 None:intergenic 45.0%
!! GGGTTAGTTGGAGAGTTGAA+AGG + Chr4:78819906-78819925 None:intergenic 45.0%
!!! TAATAGTTTTTATAAAAAAA+GGG - Chr4:78821809-78821828 MsG0480022939.01.T01:intron 5.0%
AAAGTCCGTGCTCTCGATGA+AGG - Chr4:78821644-78821663 MsG0480022939.01.T01:intron 50.0%
AAGATCCCATGCTCTTGCAC+GGG - Chr4:78822171-78822190 MsG0480022939.01.T01:intron 50.0%
AATAAGCTGCCAAGAGAGGG+AGG - Chr4:78821178-78821197 MsG0480022939.01.T01:CDS 50.0%
ACATACACGTCAACCGGAAG+GGG - Chr4:78821441-78821460 MsG0480022939.01.T01:intron 50.0%
ACCAGTTTCGCCGATGATGA+CGG + Chr4:78819767-78819786 None:intergenic 50.0%
ACGACAGGCACACGAATCAT+GGG + Chr4:78820503-78820522 None:intergenic 50.0%
AGACGAGTTGCTCAAGAGCT+CGG - Chr4:78819966-78819985 MsG0480022939.01.T01:intron 50.0%
AGGAACCTTCATCGAGAGCA+CGG + Chr4:78821652-78821671 None:intergenic 50.0%
ATCACGTCTGCTACGCTTGA+TGG - Chr4:78820728-78820747 MsG0480022939.01.T01:intron 50.0%
ATTCGTCTGCAATTCGGAGG+TGG + Chr4:78822545-78822564 None:intergenic 50.0%
CAGAGTGCAAGCTAATCAGC+GGG - Chr4:78823859-78823878 MsG0480022939.01.T01:CDS 50.0%
GCAGAGTGCAAGCTAATCAG+CGG - Chr4:78823858-78823877 MsG0480022939.01.T01:CDS 50.0%
GCGAGAAACAATAGCACGAC+AGG + Chr4:78820518-78820537 None:intergenic 50.0%
GCTGCATCGAGATAGTTCAC+AGG + Chr4:78820845-78820864 None:intergenic 50.0%
GGAGAAGAACACCGTCAGTT+AGG + Chr4:78820161-78820180 None:intergenic 50.0%
GGTGGCAAAGAACCATGTAG+AGG + Chr4:78821695-78821714 None:intergenic 50.0%
TATAGGCGGTAGCATTTCCC+TGG + Chr4:78823908-78823927 None:intergenic 50.0%
TCCCAGGGATGTTCAATACC+GGG + Chr4:78820784-78820803 None:intergenic 50.0%
TCTCGATGAAGGTTCCTGCA+TGG - Chr4:78821655-78821674 MsG0480022939.01.T01:intron 50.0%
TTGAGCAACTCGTCTGTGGA+AGG + Chr4:78819961-78819980 None:intergenic 50.0%
! AGGTTGAGTGACGGCGATTT+TGG + Chr4:78819839-78819858 None:intergenic 50.0%
! ATCATCGGCGAAACTGGTTC+CGG - Chr4:78819769-78819788 MsG0480022939.01.T01:CDS 50.0%
!! CAAGAGCTCGGTGTTCAACT+CGG - Chr4:78819978-78819997 MsG0480022939.01.T01:intron 50.0%
AAACGATGTCGTCGTCCGCT+AGG + Chr4:78819927-78819946 None:intergenic 55.0%
AACGATGTCGTCGTCCGCTA+GGG + Chr4:78819926-78819945 None:intergenic 55.0%
ACCGTCATCATCGGCGAAAC+TGG - Chr4:78819763-78819782 MsG0480022939.01.T01:CDS 55.0%
CACGACAGGCACACGAATCA+TGG + Chr4:78820504-78820523 None:intergenic 55.0%
CCATGCTCTTGCACGGGTTT+GGG - Chr4:78822177-78822196 MsG0480022939.01.T01:intron 55.0%
CGACAGGCACACGAATCATG+GGG + Chr4:78820502-78820521 None:intergenic 55.0%
CTTCCCCTGATGACACGTGA+AGG + Chr4:78822227-78822246 None:intergenic 55.0%
GCACACGAATCATGGGGTAG+TGG + Chr4:78820496-78820515 None:intergenic 55.0%
GCTCTTGAGCAACTCGTCTG+TGG + Chr4:78819965-78819984 None:intergenic 55.0%
GGCGTGTCTCATGTCTGACA+CGG - Chr4:78820303-78820322 MsG0480022939.01.T01:intron 55.0%
! CCAAACCCGTGCAAGAGCAT+GGG + Chr4:78822179-78822198 None:intergenic 55.0%
! GCCCGGTATTGAACATCCCT+GGG - Chr4:78820780-78820799 MsG0480022939.01.T01:intron 55.0%
! TGCCCGGTATTGAACATCCC+TGG - Chr4:78820779-78820798 MsG0480022939.01.T01:intron 55.0%
!! CTTCTTTGAGACCAGCCGGT+GGG + Chr4:78819672-78819691 None:intergenic 55.0%
!! TCTTCTTTGAGACCAGCCGG+TGG + Chr4:78819673-78819692 None:intergenic 55.0%
!! TTCGCCGATGATGACGGTGA+TGG + Chr4:78819761-78819780 None:intergenic 55.0%
!!! CGATTTTGGAGTAACCGCGG+CGG + Chr4:78819825-78819844 None:intergenic 55.0%
!!! CGGCGATTTTGGAGTAACCG+CGG + Chr4:78819828-78819847 None:intergenic 55.0%
AGAGCTGGACGAACACGACC+AGG - Chr4:78823887-78823906 MsG0480022939.01.T01:CDS 60.0%
CCCAAACCCGTGCAAGAGCA+TGG + Chr4:78822180-78822199 None:intergenic 60.0%
CCCATGCTCTTGCACGGGTT+TGG - Chr4:78822176-78822195 MsG0480022939.01.T01:intron 60.0%
CGTCTGCAATTCGGAGGTGG+AGG + Chr4:78822542-78822561 None:intergenic 60.0%
GACACGGCGAGGTTGAGTGA+CGG + Chr4:78819848-78819867 None:intergenic 60.0%
GAGCTGGACGAACACGACCA+GGG - Chr4:78823888-78823907 MsG0480022939.01.T01:CDS 60.0%
GTGCAAGCTAATCAGCGGGC+AGG - Chr4:78823863-78823882 MsG0480022939.01.T01:CDS 60.0%
TCTCAGATGCTTCACCGCCG+CGG - Chr4:78819808-78819827 MsG0480022939.01.T01:CDS 60.0%
! CGTCGTCCGCTAGGGTTAGT+TGG + Chr4:78819918-78819937 None:intergenic 60.0%
AATCAGCGGGCAGGCAGAGC+TGG - Chr4:78823872-78823891 MsG0480022939.01.T01:CDS 65.0%
AGACGGAGACGGCAGCGACA+CGG + Chr4:78819864-78819883 None:intergenic 65.0%
TCGCTGCCGTCTCCGTCTCT+AGG - Chr4:78819866-78819885 MsG0480022939.01.T01:CDS 65.0%
GAGACGGCAGCGACACGGCG+AGG + Chr4:78819859-78819878 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 78819661 78824093 78819661 ID=MsG0480022939.01;Name=MsG0480022939.01
Chr4 mRNA 78819661 78824093 78819661 ID=MsG0480022939.01.T01;Parent=MsG0480022939.01;Name=MsG0480022939.01.T01;_AED=0.44;_eAED=0.48;_QI=0|1|0.71|1|1|1|7|0|465
Chr4 exon 78823495 78824093 78823495 ID=MsG0480022939.01.T01:exon:11156;Parent=MsG0480022939.01.T01
Chr4 exon 78822873 78823090 78822873 ID=MsG0480022939.01.T01:exon:11155;Parent=MsG0480022939.01.T01
Chr4 exon 78822265 78822317 78822265 ID=MsG0480022939.01.T01:exon:11154;Parent=MsG0480022939.01.T01
Chr4 exon 78822030 78822146 78822030 ID=MsG0480022939.01.T01:exon:11153;Parent=MsG0480022939.01.T01
Chr4 exon 78821139 78821230 78821139 ID=MsG0480022939.01.T01:exon:11152;Parent=MsG0480022939.01.T01
Chr4 exon 78820305 78820391 78820305 ID=MsG0480022939.01.T01:exon:11151;Parent=MsG0480022939.01.T01
Chr4 exon 78819661 78819892 78819661 ID=MsG0480022939.01.T01:exon:11150;Parent=MsG0480022939.01.T01
Chr4 CDS 78823495 78824093 78823495 ID=MsG0480022939.01.T01:cds;Parent=MsG0480022939.01.T01
Chr4 CDS 78822873 78823090 78822873 ID=MsG0480022939.01.T01:cds;Parent=MsG0480022939.01.T01
Chr4 CDS 78822265 78822317 78822265 ID=MsG0480022939.01.T01:cds;Parent=MsG0480022939.01.T01
Chr4 CDS 78822030 78822146 78822030 ID=MsG0480022939.01.T01:cds;Parent=MsG0480022939.01.T01
Chr4 CDS 78821139 78821230 78821139 ID=MsG0480022939.01.T01:cds;Parent=MsG0480022939.01.T01
Chr4 CDS 78820305 78820391 78820305 ID=MsG0480022939.01.T01:cds;Parent=MsG0480022939.01.T01
Chr4 CDS 78819661 78819892 78819661 ID=MsG0480022939.01.T01:cds;Parent=MsG0480022939.01.T01
Gene Sequence

>MsG0480022939.01.T01

TTGTTTTTCCCACCGGCTGGTCTCAAAGAAGAAAGAATGGCAACTCTTCCCATTGTCCAATACGAAGAGAAGATTATCGAAACCGTAGAAAAAAACTCCATCACCGTCATCATCGGCGAAACTGGTTCCGGTAAGAGCACTCAACTCTCTCAGATGCTTCACCGCCGCGGTTACTCCAAAATCGCCGTCACTCAACCTCGCCGTGTCGCTGCCGTCTCCGTCTCTAGGTTTGTATCAGTTCCCCTTTCAACTCTCCAACTAACCCTAGCGGACGACGACATCGTTTTAACTCATCTTCCTTCCACAGACGAGTTGCTCAAGAGCTCGGTGTTCAACTCGGAGAAGAAGTTGGTTACGCCATTCGATTCGAAGACAGAACTTCACGCAACACGCGCATTAAGTAATTACTTATTTTTTTCAATGCTTCATTCTCAATTGGTTAGTTATCGTTGTTCGTTGATTCGATTCAATTTCATTCAATTCGATTCGATTAGGTACCTAACTGACGGTGTTCTTCTCCGAGAAAGTTTAGCTGATCCTGAACTAAATGATTATTCTGTTATCATATTGGATGAAGCTCATGAACGGAGTTTGAACACAGATATATTGATGGGGCTTATGAAACGTTTGGTGAAAATTCGTTCCTCCAATCTCAAAGTGTTGATCACGTCTGCTACGCTTGATGGTGATAAAGTATCGAAGTTCTTTCGAGATTGCCCGGTATTGAACATCCCTGGGAAGTTGTATCCTGTTGAGGTTCTTTTTAGCAAGGAGCGGCCTGTGAACTATCTCGATGCAGCTCTTAAAACAGCTCTTGATATACATACACGTCAACCGGAAGGGGATATTTTAATATTCATGACTGGACAGGATGACATAGAGAAGTTGGTATCGAAAATGGAAGAAAAAGTCCGTGCTCTCGATGAAGGTTCCTGCATGGATGCTATAATCTTTCCTCTACATGGTTCTTTGCCACCTGAATTGCAGGTGCGTGTATTTAGTCCTCCACCTCCGAATTGCAGACGAATCATTGTTGCTACAAATATTGCTGAAACTTCTTTGACTGTTGATGGTGTAGTGTATGTTATTGACTCTGGGTATGTAAAGCAGAGGCAGTACAATCCATCTAGTAGGATGTATTCCCTTGATGTTGTTCAAATTAGCAAAGTGCAAGCTAATCAGCGGGCAGGCAGAGCTGGACGAACACGACCAGGGAAATGCTACCGCCTATATCCTTCCCAAATCTACCATGATGAGTTTTTGGACGTTACAGTTCCTGAAATTCAGAGATCTTCTCTTGCCGGCAGTGTGCTTTACTTGAAGTCATTGGACCTCCCTGATATTGACATTCTCAAATTTGACTTCCTTGATTCTCCGTCATGTAAGATCTTTTTATAG
Protein sequence

>MsG0480022939.01.T01

LFFPPAGLKEERMATLPIVQYEEKIIETVEKNSITVIIGETGSGKSTQLSQMLHRRGYSKIAVTQPRRVAAVSVSRFVSVPLSTLQLTLADDDIVLTHLPSTDELLKSSVFNSEKKLVTPFDSKTELHATRALSNYLFFSMLHSQLVSYRCSLIRFNFIQFDSIRYLTDGVLLRESLADPELNDYSVIILDEAHERSLNTDILMGLMKRLVKIRSSNLKVLITSATLDGDKVSKFFRDCPVLNIPGKLYPVEVLFSKERPVNYLDAALKTALDIHTRQPEGDILIFMTGQDDIEKLVSKMEEKVRALDEGSCMDAIIFPLHGSLPPELQVRVFSPPPPNCRRIIVATNIAETSLTVDGVVYVIDSGYVKQRQYNPSSRMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSQIYHDEFLDVTVPEIQRSSLAGSVLYLKSLDLPDIDILKFDFLDSPSCKIFL*