AlfalfaGEDB | MsG0180004988.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004988.01

KEGG: K10526
GO: GO:0003824 GO:0006486 GO:0008152 GO:0016757
PFAM: PF00501 PF03016

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004988.01.T01	KAG2401910.1	44.479	317	107	10	139	386	8	324	4.46E-57	204

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004988.01.T01	M4IQR7	77.586	58	13	0	328	385	424	481	3.23E-22	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004988.01.T01	A0A2K3P259	55.814	215	68	5	138	325	7	221	2.60e-57	208

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047989.01	MsG0180004988.01	0.824339	8.516417e-54	7.521633e-51
MsG0080048660.01	MsG0180004988.01	0.808624	2.825900e-50	1.623589e-47
MsG0080048969.01	MsG0180004988.01	0.802745	4.849108e-49	2.394042e-46
MsG0080049002.01	MsG0180004988.01	0.811565	6.571148e-51	4.081210e-48
MsG0180000489.01	MsG0180004988.01	0.830252	3.261619e-55	3.418047e-52
MsG0180000491.01	MsG0180004988.01	0.821063	4.927117e-53	3.967274e-50
MsG0180000639.01	MsG0180004988.01	0.808131	3.600982e-50	2.042398e-47
MsG0180001091.01	MsG0180004988.01	0.816997	4.143542e-52	2.981525e-49
MsG0180002891.01	MsG0180004988.01	0.809502	1.833375e-50	1.078249e-47
MsG0180003499.01	MsG0180004988.01	0.817520	3.160663e-52	2.306951e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004988.01.T01	MTR_1g090737	58.416	202	57	5	151	325	20	221	8.46e-59	202
MsG0180004988.01.T01	MTR_1g090737	96.610	59	2	0	328	386	439	497	1.77e-29	121
MsG0180004988.01.T01	MTR_1g090733	100.000	49	0	0	86	134	280	328	2.87e-26	112
MsG0180004988.01.T01	MTR_1g090733	87.179	39	5	0	49	87	180	218	1.69e-12	69.7
MsG0180004988.01.T01	MTR_8g039720	72.414	58	16	0	328	385	436	493	5.84e-22	99.0
MsG0180004988.01.T01	MTR_1g026310	68.966	58	18	0	328	385	433	490	3.46e-21	96.7
MsG0180004988.01.T01	MTR_1g073180	66.667	66	22	0	320	385	399	464	4.00e-21	96.3
MsG0180004988.01.T01	MTR_1g073180	66.667	66	22	0	320	385	421	486	4.04e-21	96.3
MsG0180004988.01.T01	MTR_2g095510	41.818	110	51	1	276	385	373	469	1.04e-20	95.1
MsG0180004988.01.T01	MTR_4g057730	70.690	58	17	0	328	385	415	472	4.25e-20	93.2

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004988.01.T01	AT1G20510	74.138	58	15	328	385	417	474	8.97e-23	101
MsG0180004988.01.T01	AT1G20510	75.439	57	14	328	384	417	473	1.83e-22	100
MsG0180004988.01.T01	AT1G20500	69.492	59	18	327	385	422	480	1.48e-21	97.8
MsG0180004988.01.T01	AT5G38120	70.690	58	17	328	385	423	480	1.09e-20	95.1
MsG0180004988.01.T01	AT5G38120	70.690	58	17	328	385	423	480	1.17e-20	95.1
MsG0180004988.01.T01	AT5G38120	71.930	57	16	328	384	423	479	2.64e-20	93.6
MsG0180004988.01.T01	AT5G38120	71.930	57	16	328	384	423	479	2.64e-20	93.6
MsG0180004988.01.T01	AT1G20480	66.129	62	21	328	389	438	499	6.87e-20	92.8
MsG0180004988.01.T01	AT4G19010	67.273	55	18	328	382	435	489	2.67e-19	90.9
MsG0180004988.01.T01	AT4G05160	65.517	58	20	328	385	417	474	9.61e-19	89.4

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Find 97 sgRNAs with CRISPR-Local

Find 554 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGTGAAAATAGGCGG+AGG	0.598562	1:-85282641	None:intergenic
AAAATGTCAGGAGAGGGAGT+TGG	0.660081	1:+85280988	MsG0180004988.01.T01:intron
AAAGAGTGAAAATAGGCGGA+GGG	0.588432	1:-85282640	None:intergenic
AAATATGTGAATATAATTGC+TGG	0.457652	1:+85275887	MsG0180004988.01.T01:CDS
AACTGCTGCATCAACAATAA+GGG	0.374049	1:-85282604	None:intergenic
AAGAAACTGGCAGATACCGA+TGG	0.659816	1:+85282720	MsG0180004988.01.T01:CDS
AAGAGTGAAAATAGGCGGAG+GGG	0.714480	1:-85282639	None:intergenic
AAGGAGCTAATCAAGCACAA+AGG	0.617428	1:+85282379	MsG0180004988.01.T01:CDS
AATAGGCGGAGGGGATCGTA+CGG	0.585896	1:-85282630	None:intergenic
AATCAAGCACAAAGGGTATC+AGG	0.343261	1:+85282387	MsG0180004988.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCACAAATGTATCGTT+TGG	+	Chr1:85279230-85279249	MsG0180004988.01.T01:intron	30.0%
AAATATTGCATATGTGCTAG+AGG	+	Chr1:85276957-85276976	MsG0180004988.01.T01:intron	30.0%
AACAACTAGCATATAGTTTG+AGG	+	Chr1:85276132-85276151	MsG0180004988.01.T01:intron	30.0%
AAGAAAGGTGATATTCAATG+TGG	+	Chr1:85278323-85278342	MsG0180004988.01.T01:intron	30.0%
AATAAGCTGAAAACAACTTG+CGG	-	Chr1:85275415-85275434	None:intergenic	30.0%
AATAGAACATAGGACCATTT+GGG	-	Chr1:85275554-85275573	None:intergenic	30.0%
AATCCACTAAGAAAAATTGC+AGG	+	Chr1:85276761-85276780	MsG0180004988.01.T01:intron	30.0%
AATGGCCAAATTTATATGCT+GGG	+	Chr1:85279736-85279755	MsG0180004988.01.T01:intron	30.0%
AATTCACATCCTACTAATTG+AGG	-	Chr1:85278836-85278855	None:intergenic	30.0%
ACAAAGGTTAGAGAATTTGA+TGG	+	Chr1:85274638-85274657	MsG0180004988.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	85274519	85282842	85274519	ID=MsG0180004988.01;Name=MsG0180004988.01
Chr1	mRNA	85274519	85282842	85274519	ID=MsG0180004988.01.T01;Parent=MsG0180004988.01;Name=MsG0180004988.01.T01;_AED=0.37;_eAED=0.43;_QI=0\|0\|0\|1\|1\|1\|7\|0\|453
Chr1	exon	85274519	85274643	85274519	ID=MsG0180004988.01.T01:exon:9564;Parent=MsG0180004988.01.T01
Chr1	exon	85275007	85275138	85275007	ID=MsG0180004988.01.T01:exon:9565;Parent=MsG0180004988.01.T01
Chr1	exon	85275829	85275972	85275829	ID=MsG0180004988.01.T01:exon:9566;Parent=MsG0180004988.01.T01
Chr1	exon	85280998	85281391	85280998	ID=MsG0180004988.01.T01:exon:9567;Parent=MsG0180004988.01.T01
Chr1	exon	85281480	85281667	85281480	ID=MsG0180004988.01.T01:exon:9568;Parent=MsG0180004988.01.T01
Chr1	exon	85282309	85282408	85282309	ID=MsG0180004988.01.T01:exon:9569;Parent=MsG0180004988.01.T01
Chr1	exon	85282564	85282842	85282564	ID=MsG0180004988.01.T01:exon:9570;Parent=MsG0180004988.01.T01
Chr1	CDS	85274519	85274643	85274519	ID=MsG0180004988.01.T01:cds;Parent=MsG0180004988.01.T01
Chr1	CDS	85275007	85275138	85275007	ID=MsG0180004988.01.T01:cds;Parent=MsG0180004988.01.T01
Chr1	CDS	85275829	85275972	85275829	ID=MsG0180004988.01.T01:cds;Parent=MsG0180004988.01.T01
Chr1	CDS	85280998	85281391	85280998	ID=MsG0180004988.01.T01:cds;Parent=MsG0180004988.01.T01
Chr1	CDS	85281480	85281667	85281480	ID=MsG0180004988.01.T01:cds;Parent=MsG0180004988.01.T01
Chr1	CDS	85282309	85282408	85282309	ID=MsG0180004988.01.T01:cds;Parent=MsG0180004988.01.T01
Chr1	CDS	85282564	85282842	85282564	ID=MsG0180004988.01.T01:cds;Parent=MsG0180004988.01.T01

Gene Sequence

>MsG0180004988.01.T01

ATGTTACTTTTCAATCAATTCAAGAGAAAGGAGAAATCTTTGAAAGTAGAGTTTGAAGTGGAAAATTATGAAAAACAAATTCACACTTTCAATCAAAAATACTTCTTGATGATCTACACACAAAGAAGCCGAAAGTGGTCTTCGCAACGTGACCGTGAACTCTTATCTGCAAAACTAGAGATTGAAAATGCAAATGTCTTATCGAACTCTTCAGGACTCCATGCACCTGTTTACCGAGAAGTTTCCAAATTTTCAAGTTCGCAAATGCTAAGGGCCAATCTTTCTGACAATAAGAAGATGGAGCAGTACCTTGACAAATATGTGAATATAATTGCTGGAAAATATCGTTTCTGGAACAGAACTGGAGGAGCAGACCATTTTCTCGTTGCCTGTCATGATTGGAGAGGGAGTTGGTCATCCGTTGAAGAAGAATCTGGCGAATCTCTGCCTCCATTTGATAACAGAGTGGCTACAATCCAAGAAACAGGAATTTACCATTCTCTTGTTAAGCTTGAAACCAAACATGAAATCCCACCAAAGCCAGATCTCAACACTGCAACTCTTGTGCTATCACAGTTCCCACAAGGAGATCTTGCTGATGCAAGAATTGCATTCATTGACTTAAATACTAATCATAGTGTAACCTACGGTGAGATTCGTCGATCAGTTTACTCCCTTGCAACAGCTTTGTTCCAGGACTTGAGATTGAAAAGGCGACGTCGTGTTTTTATTGTCCTCCAAACTCATCTTGTGAATCTTGTACTCAACCATATGCTTAGCTGTGTTACTCAGTTGCACCAGAAGAGTTACACAAATGGTCCCAAACTGGAGTTCCTACAATTCTCACCTCTGGGACATCTGATGGAAAGTTTTTATCAGTTTGAAGAGTTAATAGAAGGCTGCTATGATTCACAAGAGTTGCCACATGTTCCTGTGGAGCAATCAGACACTGCCGCTATACTTTACTCTTCAGGACTACTGGAAGGTTGGTTGAGGACAGGTGATCTTGGTTATATCGATGAGAATGGAATTGTCTACATAGTTGAACGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTAGCTCCTGCAGAACTGGAATCTGTGCTGCTAAGTCATCCCCTTATTGTTGATGCAGCAGTTATTCCGTACGATCCCCTCCGCCTATTTTCACTCTTTTTTCATTCTCTCTGTGACTTTCTTATGTGGACAAAAAATGTTGCAGGGTTGAAGATGAAGAAACTGGCAGATACCGATGGCATATGTGGTGAGGGCAGCTGGTTCTCACTACAGAAGATCAAGTCATTCAATTTGTGCAGGCCAGGTAGGCCACTCTTGGCTCCTGATTTCATGCAGTAA

Protein sequence

>MsG0180004988.01.T01

MLLFNQFKRKEKSLKVEFEVENYEKQIHTFNQKYFLMIYTQRSRKWSSQRDRELLSAKLEIENANVLSNSSGLHAPVYREVSKFSSSQMLRANLSDNKKMEQYLDKYVNIIAGKYRFWNRTGGADHFLVACHDWRGSWSSVEEESGESLPPFDNRVATIQETGIYHSLVKLETKHEIPPKPDLNTATLVLSQFPQGDLADARIAFIDLNTNHSVTYGEIRRSVYSLATALFQDLRLKRRRRVFIVLQTHLVNLVLNHMLSCVTQLHQKSYTNGPKLEFLQFSPLGHLMESFYQFEELIEGCYDSQELPHVPVEQSDTAAILYSSGLLEGWLRTGDLGYIDENGIVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPYDPLRLFSLFFHSLCDFLMWTKNVAGLKMKKLADTDGICGEGSWFSLQKIKSFNLCRPGRPLLAPDFMQ*