AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000639.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000639.01.T01 MTR_1g011470 95.704 419 16 2 1 419 6 422 0.0 823
MsG0180000639.01.T01 MTR_3g107970 58.134 461 140 7 9 419 17 474 0.0 518
MsG0180000639.01.T01 MTR_2g102550 46.528 432 204 5 3 419 10 429 1.31e-118 352
MsG0180000639.01.T01 MTR_2g102520 59.386 293 116 3 130 419 187 479 1.62e-115 346
MsG0180000639.01.T01 MTR_3g088415 51.661 271 131 0 139 409 221 491 5.81e-98 302
MsG0180000639.01.T01 MTR_3g088405 50.182 275 135 1 142 414 227 501 2.18e-94 293
MsG0180000639.01.T01 MTR_1g018680 48.239 284 144 2 135 416 68 350 4.88e-89 274
MsG0180000639.01.T01 MTR_3g102510 48.249 257 133 0 158 414 74 330 2.17e-84 261
MsG0180000639.01.T01 MTR_3g102530 47.059 272 142 1 145 414 71 342 4.42e-82 256
MsG0180000639.01.T01 MTR_3g088415 53.182 220 103 0 139 358 221 440 4.64e-81 256
MsG0180000639.01.T01 MTR_3g102520 45.588 272 146 1 145 414 78 349 6.03e-80 251
MsG0180000639.01.T01 MTR_3g102560 48.485 264 129 4 151 414 61 317 4.47e-73 232
MsG0180000639.01.T01 MTR_3g102540 47.451 255 126 4 162 414 13 261 5.20e-69 220
MsG0180000639.01.T01 MTR_3g088415 54.651 172 78 0 139 310 221 392 1.35e-63 209
MsG0180000639.01.T01 MTR_5g023790 40.441 272 154 4 142 412 155 419 4.85e-60 201
MsG0180000639.01.T01 MTR_7g089080 42.125 273 153 5 142 412 182 451 8.91e-59 207
MsG0180000639.01.T01 MTR_5g088980 42.248 258 141 5 156 412 163 413 4.59e-58 196
MsG0180000639.01.T01 MTR_8g074000 39.350 277 156 6 139 412 156 423 1.47e-57 195
MsG0180000639.01.T01 MTR_5g023790 43.777 233 123 4 142 373 155 380 9.11e-57 191
MsG0180000639.01.T01 MTR_5g023790 44.379 169 92 2 142 309 155 322 4.01e-41 149
MsG0180000639.01.T01 MTR_3g060770 34.298 242 143 9 155 389 29 261 2.09e-29 116
MsG0180000639.01.T01 MTR_3g061680 33.891 239 144 8 140 373 4 233 1.02e-27 111
MsG0180000639.01.T01 MTR_3g060820 31.765 255 160 6 140 389 4 249 9.14e-27 108
MsG0180000639.01.T01 MTR_3g060410 35.437 206 122 6 191 389 135 336 1.02e-26 110
MsG0180000639.01.T01 MTR_3g060400 29.811 265 157 8 155 399 25 280 1.37e-25 105
MsG0180000639.01.T01 MTR_3g460990 29.811 265 157 8 155 399 25 280 1.37e-25 105
MsG0180000639.01.T01 MTR_1g032850 36.667 180 98 5 178 353 364 531 7.16e-20 92.0
MsG0180000639.01.T01 MTR_5g044040 46.753 77 41 0 213 289 7 83 5.43e-19 83.2
MsG0180000639.01.T01 MTR_5g011900 29.932 147 102 1 184 330 95 240 1.84e-15 75.9
MsG0180000639.01.T01 MTR_6g045270 29.461 241 144 9 150 383 38 259 3.16e-15 76.6
MsG0180000639.01.T01 MTR_3g100710 27.933 179 124 3 169 342 73 251 1.35e-14 75.1
MsG0180000639.01.T01 MTR_4g080990 26.257 179 127 3 169 342 68 246 3.28e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000639.01.T01 AT5G11300 51.288 427 174 6 9 419 26 434 2.35e-137 400
MsG0180000639.01.T01 AT5G25380 48.956 431 181 8 8 419 25 435 3.22e-126 372
MsG0180000639.01.T01 AT5G25380 48.956 431 181 8 8 419 25 435 3.22e-126 372
MsG0180000639.01.T01 AT5G25380 49.528 424 195 8 8 419 25 441 3.59e-126 372
MsG0180000639.01.T01 AT5G25380 48.792 414 174 7 8 403 25 418 1.35e-121 360
MsG0180000639.01.T01 AT1G80370 46.860 414 197 4 10 411 48 450 8.59e-121 359
MsG0180000639.01.T01 AT1G15570 44.248 452 217 7 1 419 1 450 1.20e-116 348
MsG0180000639.01.T01 AT5G11300 49.041 365 153 5 9 358 26 372 2.67e-107 323
MsG0180000639.01.T01 AT1G44110 51.685 267 129 0 142 408 178 444 4.24e-98 301
MsG0180000639.01.T01 AT5G43080 42.857 364 167 4 62 414 10 343 6.57e-97 294
MsG0180000639.01.T01 AT1G47210 51.282 273 131 1 144 414 88 360 6.71e-95 290
MsG0180000639.01.T01 AT5G43080 42.857 364 162 5 62 414 10 338 8.16e-95 289
MsG0180000639.01.T01 AT1G77390 45.538 325 171 2 88 408 106 428 1.67e-92 286
MsG0180000639.01.T01 AT1G47230 45.000 320 154 3 99 414 52 353 7.50e-91 279
MsG0180000639.01.T01 AT1G47230 44.860 321 154 4 99 414 52 354 4.69e-89 275
MsG0180000639.01.T01 AT1G47220 50.185 271 129 2 144 410 42 310 6.13e-85 263
MsG0180000639.01.T01 AT1G76310 40.925 281 157 5 134 412 152 425 6.93e-62 206
MsG0180000639.01.T01 AT1G20610 39.706 272 156 4 142 412 160 424 1.83e-59 200
MsG0180000639.01.T01 AT1G76310 43.802 242 127 5 134 373 152 386 1.57e-57 194
MsG0180000639.01.T01 AT5G06150 42.279 272 148 5 142 412 165 428 3.84e-56 191
MsG0180000639.01.T01 AT1G76310 37.217 309 157 6 134 412 152 453 8.69e-56 191
MsG0180000639.01.T01 AT2G26760 40.672 268 148 7 136 399 105 365 4.84e-54 184
MsG0180000639.01.T01 AT3G11520 42.353 255 139 4 158 412 159 405 6.48e-53 182
MsG0180000639.01.T01 AT4G37490 39.209 278 154 7 142 412 148 417 1.67e-51 179
MsG0180000639.01.T01 AT2G17620 35.955 356 193 9 55 408 92 414 3.65e-51 178
MsG0180000639.01.T01 AT3G11520 45.291 223 114 4 158 380 159 373 9.14e-51 176
MsG0180000639.01.T01 AT4G35620 40.221 271 148 7 142 408 155 415 3.71e-49 172
MsG0180000639.01.T01 AT1G16330 37.647 255 152 3 158 412 395 642 6.11e-48 174
MsG0180000639.01.T01 AT4G35620 42.797 236 121 7 142 373 155 380 8.49e-46 162
MsG0180000639.01.T01 AT1G76310 45.251 179 95 3 134 310 152 329 1.08e-43 155
MsG0180000639.01.T01 AT5G06150 45.294 170 90 3 142 310 165 332 7.49e-38 140
MsG0180000639.01.T01 AT1G20590 43.312 157 83 2 217 373 63 213 2.52e-36 134
MsG0180000639.01.T01 AT1G47210 51.402 107 46 2 144 246 88 192 8.59e-30 114
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 241 387 1.80e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 255 401 2.19e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 255 401 2.19e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 255 401 2.19e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 255 401 2.19e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 252 398 2.29e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 252 398 2.29e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 255 401 2.40e-20 93.6
MsG0180000639.01.T01 AT1G34460 36.095 169 85 4 142 309 255 401 2.50e-20 93.2
MsG0180000639.01.T01 AT1G14750 32.432 185 112 5 167 347 365 540 5.59e-17 83.6
MsG0180000639.01.T01 AT1G14750 32.432 185 112 5 167 347 365 540 7.18e-17 83.2
MsG0180000639.01.T01 AT1G14750 32.432 185 112 5 167 347 197 372 7.69e-17 82.4
MsG0180000639.01.T01 AT1G14750 32.432 185 111 6 167 347 197 371 1.31e-15 78.6
MsG0180000639.01.T01 AT1G70210 30.901 233 139 8 124 345 17 238 3.59e-15 76.6

Find 100 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACAAGCTGTTGTTAT+TGG 0.143407 1:+9051983 MsG0180000639.01.T01:CDS
CTGCAAGGTTTCCATGTAAT+TGG 0.188546 1:-9054458 None:intergenic
AGTTAAAGGATTCTCCTATT+TGG 0.207301 1:+9054163 MsG0180000639.01.T01:CDS
GGACATTGATTCGAAGTTAA+AGG 0.247922 1:+9054149 MsG0180000639.01.T01:CDS
TGTTCATTATAACATAAATA+AGG 0.265357 1:-9056919 None:intergenic
TTGTTATTCATTTCCAATTA+CGG 0.287237 1:+9056761 MsG0180000639.01.T01:three_prime_UTR
TGAATACTAGTGTATATATC+AGG 0.293341 1:-9054198 None:intergenic
AGTACGGAATAGCCCGTAAT+TGG 0.299223 1:-9056774 None:intergenic
TGTCTTCTTAACATCCTCTT+TGG 0.302207 1:-9053458 None:intergenic
AAAAGAGATTCCACCGGTTT+CGG 0.329052 1:-9056625 None:intergenic
TGTTATTCATTTCCAATTAC+GGG 0.340650 1:+9056762 MsG0180000639.01.T01:three_prime_UTR
CACAGCAGATGCAGCTATCT+TGG 0.343056 1:-9056168 None:intergenic
TCAAGCTGATCTGGAATTCC+TGG 0.345312 1:+9056088 MsG0180000639.01.T01:CDS
AGCAAAATGGACAAAGAAAA+TGG 0.345326 1:+9051905 MsG0180000639.01.T01:exon
ATATTGATAGGTATTGAAAA+TGG 0.354850 1:+9055635 MsG0180000639.01.T01:intron
TACAGTGAGGGAGAGCAAAA+TGG 0.378343 1:+9051892 MsG0180000639.01.T01:intron
AGAGACTAGAAAATGACTTT+AGG 0.380874 1:+9056669 MsG0180000639.01.T01:three_prime_UTR
TGGAAGAAGTTTGTGCTACT+TGG 0.381330 1:-9055818 None:intergenic
TCAGGTTGCTCAAGCTGATC+TGG 0.388931 1:+9056079 MsG0180000639.01.T01:intron
CTGAGAAATGTCTTGATTGT+TGG 0.391036 1:-9055699 None:intergenic
GTTTCCATGTAATTGGCTAA+TGG 0.400537 1:-9054451 None:intergenic
ATTCCGTACTTGTGACTTGT+AGG 0.403605 1:+9056787 MsG0180000639.01.T01:three_prime_UTR
AGTTAATTATACCTCTTGTC+TGG 0.420863 1:-9055529 None:intergenic
ATGGATGCTCTGACTGGTTG+AGG 0.422309 1:-9056208 None:intergenic
CTTCTTAACATCCTCTTTGG+TGG 0.429197 1:-9053455 None:intergenic
TGCATTGAGACGACAACCTT+TGG 0.430632 1:-9056415 None:intergenic
TTTGCAAATCCATCAGTTCA+AGG 0.431764 1:-9056386 None:intergenic
GGGGCATAAGAAGTCCAAAT+AGG 0.432031 1:-9054177 None:intergenic
GATTCTGGTTGACTGGCTTG+TGG 0.442775 1:+9054507 MsG0180000639.01.T01:CDS
AAGCAACTGCAGCCTTCGTT+TGG 0.443429 1:-9054933 None:intergenic
AACTACTGTCCTTGAACTGA+TGG 0.453205 1:+9056377 MsG0180000639.01.T01:CDS
TATCTGAATCAAGATATATA+TGG 0.453894 1:+9056694 MsG0180000639.01.T01:three_prime_UTR
AAATTCCCTGCTTTCAATGC+AGG 0.457696 1:+9053552 MsG0180000639.01.T01:CDS
ACTAAGTGCCTCAGTTGGCT+TGG 0.457791 1:+9054119 MsG0180000639.01.T01:CDS
ACAGCAAGGTAAAGTGTGTC+TGG 0.458805 1:-9054872 None:intergenic
TCGTTTGGTAATCAAACGTT+GGG 0.460508 1:-9054918 None:intergenic
CTAAGTGCCTCAGTTGGCTT+GGG 0.464985 1:+9054120 MsG0180000639.01.T01:CDS
CTCAGTTGGCTTGGGAATTG+TGG 0.470396 1:+9054128 MsG0180000639.01.T01:CDS
CACAGAAGGTTGCACTTGCA+AGG 0.472581 1:-9053527 None:intergenic
GGCGAATTTGTCTCCGAAAC+CGG 0.473905 1:+9056612 MsG0180000639.01.T01:CDS
TGGATGCTCTGACTGGTTGA+GGG 0.474594 1:-9056207 None:intergenic
TTTGTATAGTGCTCCAGAGT+TGG 0.476724 1:-9056333 None:intergenic
AATGAATAACAACAATTTGA+AGG 0.479469 1:-9056750 None:intergenic
TCCATTACACAGAAGAAAGA+AGG 0.481135 1:+9053373 MsG0180000639.01.T01:intron
TATGAAGAGATTTGTGCTCC+TGG 0.491959 1:+9055468 MsG0180000639.01.T01:CDS
TCAACCAGTCAGAGCATCCA+TGG 0.494706 1:+9056210 MsG0180000639.01.T01:CDS
AAACGAAGGCTGCAGTTGCT+TGG 0.504335 1:+9054935 MsG0180000639.01.T01:CDS
GAGTGTCCTGCATTGAAAGC+AGG 0.509049 1:-9053558 None:intergenic
CTTGCAAGTGCAACCTTCTG+TGG 0.514382 1:+9053528 MsG0180000639.01.T01:CDS
GGTATTGAAAATGGAGAAAG+AGG 0.514785 1:+9055644 MsG0180000639.01.T01:intron
CAACAATCAAGACATTTCTC+AGG 0.517270 1:+9055700 MsG0180000639.01.T01:CDS
AGACCCATGGATGCTCTGAC+TGG 0.519969 1:-9056214 None:intergenic
ACTCTCAACTCTCCAAATAC+AGG 0.521458 1:+9053577 MsG0180000639.01.T01:CDS
TTAAATCTCTCCAGTGTGAA+AGG 0.524126 1:+9054425 MsG0180000639.01.T01:intron
TGGTAATCAAACGTTGGGAA+AGG 0.528424 1:-9054913 None:intergenic
TTATTTGCAGAATCCAACTC+TGG 0.529754 1:+9056320 MsG0180000639.01.T01:intron
GCTCTGCTAAATAGTTTGCC+AGG 0.535403 1:-9056106 None:intergenic
ATCATCTTCTGAAGCTACAT+TGG 0.535646 1:-9053413 None:intergenic
AGACATCACTCCCGGCATGA+GGG 0.538658 1:+9054483 MsG0180000639.01.T01:CDS
ACGCAAAAGTCTTCAACTCC+AGG 0.542382 1:-9055486 None:intergenic
TGTAGGATGGTACCAACCTC+CGG 0.547448 1:+9056804 MsG0180000639.01.T01:three_prime_UTR
TTCGTTTGGTAATCAAACGT+TGG 0.551985 1:-9054919 None:intergenic
GAATACTAGTGTATATATCA+GGG 0.553135 1:-9054197 None:intergenic
TTGCAGCAAGACATCACTCC+CGG 0.557538 1:+9054475 MsG0180000639.01.T01:CDS
CGTACTTGTGACTTGTAGGA+TGG 0.557941 1:+9056791 MsG0180000639.01.T01:three_prime_UTR
AAGACATCACTCCCGGCATG+AGG 0.557995 1:+9054482 MsG0180000639.01.T01:CDS
GATCAAGAAGCACCGGAGGT+TGG 0.559741 1:-9056816 None:intergenic
CTGCTGTGTTACTTGCAAGA+TGG 0.565071 1:+9056183 MsG0180000639.01.T01:CDS
AAGAAAATGGTGTGAATGTG+AGG 0.565412 1:+9051918 MsG0180000639.01.T01:CDS
TCTGGTTGACTGGCTTGTGG+AGG 0.565987 1:+9054510 MsG0180000639.01.T01:CDS
GCAGATGCAGCTATCTTGGA+AGG 0.568316 1:-9056164 None:intergenic
TTTGGTGGTGAAAACTTGCA+AGG 0.568318 1:-9053440 None:intergenic
AGTGTCCTGCATTGAAAGCA+GGG 0.570481 1:-9053557 None:intergenic
AGTAGCACAAACTTCTTCCA+AGG 0.585183 1:+9055821 MsG0180000639.01.T01:CDS
GAGGCCATTAGCCAATTACA+TGG 0.590812 1:+9054447 MsG0180000639.01.T01:CDS
ATGTGAGGGTGACTCGAGCA+AGG 0.595779 1:+9051933 MsG0180000639.01.T01:CDS
GACATCACTCCCGGCATGAG+GGG 0.600953 1:+9054484 MsG0180000639.01.T01:CDS
GGGAGTGATGTCTTGCTGCA+AGG 0.604746 1:-9054473 None:intergenic
TCCTAGAAAAGAGATTCCAC+CGG 0.607987 1:-9056631 None:intergenic
TGTAGTGAATTATAAAATGA+CGG 0.610081 1:+9056843 MsG0180000639.01.T01:three_prime_UTR
ACATCACTCCCGGCATGAGG+GGG 0.610619 1:+9054485 MsG0180000639.01.T01:CDS
ACAAGTAGATCAAGAAGCAC+CGG 0.610819 1:-9056823 None:intergenic
GATTTGCAAATTAACACCAA+AGG 0.613808 1:+9056399 MsG0180000639.01.T01:CDS
CATCCTACAAGTCACAAGTA+CGG 0.621273 1:-9056790 None:intergenic
GATCAATGAGATTCACAGCA+AGG 0.622155 1:-9054886 None:intergenic
CAACCAGTCAGAGCATCCAT+GGG 0.628847 1:+9056211 MsG0180000639.01.T01:CDS
TAACACATACTCCAGACAAG+AGG 0.630206 1:+9055518 MsG0180000639.01.T01:CDS
TGTGAGGGTGACTCGAGCAA+GGG 0.633321 1:+9051934 MsG0180000639.01.T01:CDS
TGAATCAAGATATATATGGA+AGG 0.633673 1:+9056698 MsG0180000639.01.T01:three_prime_UTR
AACGTTTGATTACCAAACGA+AGG 0.634318 1:+9054921 MsG0180000639.01.T01:CDS
CCTATGACAGTTCAATAGTG+TGG 0.639183 1:+9056591 MsG0180000639.01.T01:intron
CACTAGTATTCATGTCAGAG+AGG 0.642881 1:+9054209 MsG0180000639.01.T01:CDS
AAGTACAGAAATGAAGTGTG+TGG 0.643059 1:-9051511 None:intergenic
GAGAAACTAAGTGCCTCAGT+TGG 0.643191 1:+9054114 MsG0180000639.01.T01:CDS
CACAATTCCCAAGCCAACTG+AGG 0.645149 1:-9054127 None:intergenic
AATCTCTCCAGTGTGAAAGG+AGG 0.664729 1:+9054428 MsG0180000639.01.T01:intron
GAATTTGTCTCCGAAACCGG+TGG 0.670360 1:+9056615 MsG0180000639.01.T01:CDS
AATACTAGTGTATATATCAG+GGG 0.674606 1:-9054196 None:intergenic
AGTAGATCAAGAAGCACCGG+AGG 0.705780 1:-9056820 None:intergenic
AGAAAATGGTGTGAATGTGA+GGG 0.707664 1:+9051919 MsG0180000639.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTATTATTA+TGG + Chr1:9052107-9052126 MsG0180000639.01.T01:intron 0.0%
!! AAAATATATACATAATTTCT+TGG + Chr1:9052505-9052524 MsG0180000639.01.T01:intron 10.0%
!! ATTATTATTATTATTGAGAT+TGG + Chr1:9052141-9052160 MsG0180000639.01.T01:intron 10.0%
!! GATAAATATTATATAATTCA+AGG - Chr1:9051808-9051827 None:intergenic 10.0%
!! AAATTCCTTAGTAATTTAAA+TGG + Chr1:9052370-9052389 MsG0180000639.01.T01:intron 15.0%
!! AGTTACAAATTAATTTAAAC+AGG - Chr1:9053335-9053354 None:intergenic 15.0%
!! TAATCACTATAAATCTATAA+TGG - Chr1:9054542-9054561 None:intergenic 15.0%
!! TGTTCATTATAACATAAATA+AGG - Chr1:9056922-9056941 None:intergenic 15.0%
!!! AATTATTTAAGATTGTATAC+TGG - Chr1:9054683-9054702 None:intergenic 15.0%
!!! ACATTTCATATTTTTAAACT+TGG - Chr1:9055151-9055170 None:intergenic 15.0%
!!! ATAATTAACTTTTGGTATTA+TGG + Chr1:9055542-9055561 MsG0180000639.01.T01:intron 15.0%
!!! ATTCTTTTTTTTTTCTTTTG+TGG + Chr1:9055434-9055453 MsG0180000639.01.T01:intron 15.0%
!!! GTCTTTTTTTTTTTTTCATT+TGG + Chr1:9054247-9054266 MsG0180000639.01.T01:intron 15.0%
!!! TAATTTTTTTTTCTGTTATC+AGG + Chr1:9056061-9056080 MsG0180000639.01.T01:intron 15.0%
!!! TATGAATTGAAATAATTTGT+AGG + Chr1:9052201-9052220 MsG0180000639.01.T01:intron 15.0%
!!! TATTTTTAAACTTGGTAAAT+CGG - Chr1:9055143-9055162 None:intergenic 15.0%
!!! TTGTTATTTTTTATCTTGAT+TGG + Chr1:9054065-9054084 MsG0180000639.01.T01:intron 15.0%
!! AAAAGAGAAACATATGAAAT+TGG - Chr1:9056535-9056554 None:intergenic 20.0%
!! AAATGAAAAATACCTGTATT+TGG - Chr1:9053592-9053611 None:intergenic 20.0%
!! AACCGACAAATAAATATAAA+AGG - Chr1:9052649-9052668 None:intergenic 20.0%
!! AATGAATAACAACAATTTGA+AGG - Chr1:9056753-9056772 None:intergenic 20.0%
!! AGTAATTTAAATGGTTAACA+TGG + Chr1:9052379-9052398 MsG0180000639.01.T01:intron 20.0%
!! GTTAACCATTTAAATTACTA+AGG - Chr1:9052378-9052397 None:intergenic 20.0%
!! TATCTGAATCAAGATATATA+TGG + Chr1:9056694-9056713 MsG0180000639.01.T01:three_prime_UTR 20.0%
!! TGTAGTGAATTATAAAATGA+CGG + Chr1:9056843-9056862 MsG0180000639.01.T01:three_prime_UTR 20.0%
!! TTTCATTTATCGGATATAAT+TGG + Chr1:9053604-9053623 MsG0180000639.01.T01:intron 20.0%
!!! AATGAGATTTTGTAAATCAA+TGG + Chr1:9053283-9053302 MsG0180000639.01.T01:intron 20.0%
!!! AATTGAATTGCATCAATTTT+TGG + Chr1:9054782-9054801 MsG0180000639.01.T01:intron 20.0%
!!! ATAAAAACAAGCATTTTGTA+TGG + Chr1:9052249-9052268 MsG0180000639.01.T01:intron 20.0%
!!! ATATTGATAGGTATTGAAAA+TGG + Chr1:9055635-9055654 MsG0180000639.01.T01:intron 20.0%
!!! ATATTTTAACACAATTTGAG+TGG - Chr1:9052492-9052511 None:intergenic 20.0%
!!! CACCTTTTATATTTATTTGT+CGG + Chr1:9052644-9052663 MsG0180000639.01.T01:intron 20.0%
!!! GTTAGAAAAGAGTATAAAAA+TGG + Chr1:9055285-9055304 MsG0180000639.01.T01:intron 20.0%
!!! GTTGAATTTTTATAACAATG+TGG - Chr1:9051717-9051736 None:intergenic 20.0%
!!! TACAGGTATTTTTCATTTAT+CGG + Chr1:9053594-9053613 MsG0180000639.01.T01:intron 20.0%
!!! TTAATTTGTAACTACTGATT+TGG + Chr1:9053342-9053361 MsG0180000639.01.T01:intron 20.0%
!!! TTGTTATTCATTTCCAATTA+CGG + Chr1:9056761-9056780 MsG0180000639.01.T01:three_prime_UTR 20.0%
!!! TTTTTATTACGTACAATAGA+TGG + Chr1:9052413-9052432 MsG0180000639.01.T01:intron 20.0%
! AATAATAGCAAAGCAAAACT+TGG - Chr1:9055250-9055269 None:intergenic 25.0%
! AATACTAGTGTATATATCAG+GGG - Chr1:9054199-9054218 None:intergenic 25.0%
! AATCATAACATAGAAGAAAG+TGG - Chr1:9051642-9051661 None:intergenic 25.0%
! AATTTAACCACAAAGAGAAT+AGG - Chr1:9056505-9056524 None:intergenic 25.0%
! ATATAATTGGTATGCACTAT+CGG + Chr1:9053617-9053636 MsG0180000639.01.T01:intron 25.0%
! ATGTGACTCTAATTAGATTT+AGG - Chr1:9056294-9056313 None:intergenic 25.0%
! ATTCAACACAATCATTTAGA+TGG - Chr1:9052901-9052920 None:intergenic 25.0%
! CGACAAATAAATATAAAAGG+TGG - Chr1:9052646-9052665 None:intergenic 25.0%
! GAATACTAGTGTATATATCA+GGG - Chr1:9054200-9054219 None:intergenic 25.0%
! GTTAACGTTGTTTAAATATG+TGG - Chr1:9052879-9052898 None:intergenic 25.0%
! TAGTAATTACTAACTGAACA+AGG + Chr1:9053886-9053905 MsG0180000639.01.T01:intron 25.0%
! TCAGAGCTTATAATATATCA+TGG - Chr1:9051580-9051599 None:intergenic 25.0%
! TGAAAAATATCAACATCAGA+AGG + Chr1:9056443-9056462 MsG0180000639.01.T01:CDS 25.0%
! TGAATACTAGTGTATATATC+AGG - Chr1:9054201-9054220 None:intergenic 25.0%
! TGAATCAAGATATATATGGA+AGG + Chr1:9056698-9056717 MsG0180000639.01.T01:three_prime_UTR 25.0%
! TGTTATTCATTTCCAATTAC+GGG + Chr1:9056762-9056781 MsG0180000639.01.T01:three_prime_UTR 25.0%
! TTGAATGTGAAATGAGAAAT+AGG - Chr1:9053796-9053815 None:intergenic 25.0%
! TTTATATGATGAGATGTGAT+TGG + Chr1:9053730-9053749 MsG0180000639.01.T01:intron 25.0%
!! AAAAGGCAATTATGTTTTCA+TGG + Chr1:9053014-9053033 MsG0180000639.01.T01:intron 25.0%
!! AATGATTGTGTACTTTGAAA+GGG + Chr1:9052989-9053008 MsG0180000639.01.T01:intron 25.0%
!! CATTCAAGATCAAAATTTTG+TGG - Chr1:9055325-9055344 None:intergenic 25.0%
!! CTCTATATTTTGTCCATAAA+AGG + Chr1:9053252-9053271 MsG0180000639.01.T01:intron 25.0%
!! GCAATTTAGTTTAAGCTTAA+TGG + Chr1:9055758-9055777 MsG0180000639.01.T01:intron 25.0%
!! TACTCATACATCAAATTTTG+AGG + Chr1:9052051-9052070 MsG0180000639.01.T01:CDS 25.0%
!! TACTTTGTAATTTTCCTAGT+TGG + Chr1:9054992-9055011 MsG0180000639.01.T01:intron 25.0%
!! TCATTCAATTAGTCCTTTTA+TGG - Chr1:9053268-9053287 None:intergenic 25.0%
!! TCTCTTTTAACATAATGAAG+AGG + Chr1:9056547-9056566 MsG0180000639.01.T01:intron 25.0%
!! TTGCAATATAAAGCTTTTAG+AGG - Chr1:9053190-9053209 None:intergenic 25.0%
!!! AGTCAAATAGTTCTAAATTG+TGG - Chr1:9053234-9053253 None:intergenic 25.0%
!!! ATCAATTTTTGGCTGTTTAA+TGG + Chr1:9054793-9054812 MsG0180000639.01.T01:intron 25.0%
!!! CAAGAGGTATAATTAACTTT+TGG + Chr1:9055534-9055553 MsG0180000639.01.T01:intron 25.0%
!!! GAATTTTGATGTCAAACTTA+TGG - Chr1:9052356-9052375 None:intergenic 25.0%
!!! GCTTTGTTATATTCTTTTTC+AGG + Chr1:9054826-9054845 MsG0180000639.01.T01:intron 25.0%
AAAGCAAAACTTGGTAAATC+GGG - Chr1:9055241-9055260 None:intergenic 30.0%
AACACAATTTGAGTGGTTAA+TGG - Chr1:9052485-9052504 None:intergenic 30.0%
AACTTGCATCTGACATAATT+AGG - Chr1:9055019-9055038 None:intergenic 30.0%
AATGAACAAGCTGTTGTTAT+TGG + Chr1:9051983-9052002 MsG0180000639.01.T01:CDS 30.0%
AATGGTTAACATGGTTCAAA+TGG + Chr1:9052388-9052407 MsG0180000639.01.T01:intron 30.0%
AATGTCTGATCTTTATCGAA+CGG + Chr1:9055166-9055185 MsG0180000639.01.T01:intron 30.0%
ACGTACAATAGATGGTTAAA+CGG + Chr1:9052421-9052440 MsG0180000639.01.T01:intron 30.0%
AGAGACTAGAAAATGACTTT+AGG + Chr1:9056669-9056688 MsG0180000639.01.T01:three_prime_UTR 30.0%
AGCAAAATGGACAAAGAAAA+TGG + Chr1:9051905-9051924 MsG0180000639.01.T01:exon 30.0%
AGTACACAATCATTGAGTTT+AGG - Chr1:9052983-9053002 None:intergenic 30.0%
AGTTAAAGGATTCTCCTATT+TGG + Chr1:9054163-9054182 MsG0180000639.01.T01:CDS 30.0%
AGTTAATTATACCTCTTGTC+TGG - Chr1:9055532-9055551 None:intergenic 30.0%
ATGGTTAACATGGTTCAAAT+GGG + Chr1:9052389-9052408 MsG0180000639.01.T01:intron 30.0%
ATGTGGTTAATTACGTTAAG+TGG - Chr1:9052862-9052881 None:intergenic 30.0%
CAAAGCAAAACTTGGTAAAT+CGG - Chr1:9055242-9055261 None:intergenic 30.0%
CAATGATTGTGTACTTTGAA+AGG + Chr1:9052988-9053007 MsG0180000639.01.T01:intron 30.0%
CCACAATTATCATTGTGATA+CGG + Chr1:9053155-9053174 MsG0180000639.01.T01:intron 30.0%
CGTATCACAATGATAATTGT+GGG - Chr1:9053157-9053176 None:intergenic 30.0%
GATAACTGAGAAAAAGAAGA+CGG - Chr1:9055388-9055407 None:intergenic 30.0%
GATTTGCAAATTAACACCAA+AGG + Chr1:9056399-9056418 MsG0180000639.01.T01:CDS 30.0%
GCATTTCTATCATTCCAATT+AGG + Chr1:9056019-9056038 MsG0180000639.01.T01:intron 30.0%
GCTTAAACTAAATTGCATGT+AGG - Chr1:9055754-9055773 None:intergenic 30.0%
GGATGCATGTGAAAAAAAAA+AGG + Chr1:9053751-9053770 MsG0180000639.01.T01:intron 30.0%
GTTGCCTATATAAAAGAGTT+TGG + Chr1:9052714-9052733 MsG0180000639.01.T01:intron 30.0%
TGGATAATCTTAACCAAACA+TGG + Chr1:9053034-9053053 MsG0180000639.01.T01:intron 30.0%
TTGCTGACAGAAAAAATATC+AGG - Chr1:9055218-9055237 None:intergenic 30.0%
TTGTAGTTAATTGTGTTGAG+TGG + Chr1:9052603-9052622 MsG0180000639.01.T01:intron 30.0%
! ATGTGATTTTGCAGAAATGT+TGG - Chr1:9052023-9052042 None:intergenic 30.0%
! TACTCTTTTCTAACTCTTCA+TGG - Chr1:9055279-9055298 None:intergenic 30.0%
! TATCCTTGTTTCTTAGACAA+AGG + Chr1:9054735-9054754 MsG0180000639.01.T01:intron 30.0%
! TGCAAACATAGAGTATTAGT+AGG - Chr1:9054279-9054298 None:intergenic 30.0%
! TGCTAGTAACTTCTAAAAGT+AGG - Chr1:9054022-9054041 None:intergenic 30.0%
! TGTACTTTGAAAGGGAAAAA+AGG + Chr1:9052997-9053016 MsG0180000639.01.T01:intron 30.0%
! TTAACTTTTGGTATTATGGC+TGG + Chr1:9055546-9055565 MsG0180000639.01.T01:intron 30.0%
!! TTCGGATATTTTAGATACCT+TGG - Chr1:9055841-9055860 None:intergenic 30.0%
AACGTTTGATTACCAAACGA+AGG + Chr1:9054921-9054940 MsG0180000639.01.T01:CDS 35.0%
AAGAAAATGGTGTGAATGTG+AGG + Chr1:9051918-9051937 MsG0180000639.01.T01:CDS 35.0%
AAGTACAGAAATGAAGTGTG+TGG - Chr1:9051514-9051533 None:intergenic 35.0%
ACCTTCTTTCTTCTGTGTAA+TGG - Chr1:9053377-9053396 None:intergenic 35.0%
AGAAAATGGTGTGAATGTGA+GGG + Chr1:9051919-9051938 MsG0180000639.01.T01:CDS 35.0%
AGTTAATTGTGTTGAGTGGA+TGG + Chr1:9052607-9052626 MsG0180000639.01.T01:intron 35.0%
AGTTAGTTAATCAGAACCGT+TGG + Chr1:9055083-9055102 MsG0180000639.01.T01:intron 35.0%
ATATTGTGACTGATACAGTG+AGG + Chr1:9051879-9051898 MsG0180000639.01.T01:intron 35.0%
ATGCTACAAGACCACAATTA+TGG - Chr1:9052787-9052806 None:intergenic 35.0%
ATTCAAGATCAGTCCATGTT+TGG - Chr1:9053050-9053069 None:intergenic 35.0%
CAACAATCAAGACATTTCTC+AGG + Chr1:9055700-9055719 MsG0180000639.01.T01:CDS 35.0%
CAACATACTAAGAGTCTTCT+TGG - Chr1:9054710-9054729 None:intergenic 35.0%
CAATTATCATTGTGATACGG+TGG + Chr1:9053158-9053177 MsG0180000639.01.T01:intron 35.0%
CCGTATCACAATGATAATTG+TGG - Chr1:9053158-9053177 None:intergenic 35.0%
CTGAGAAATGTCTTGATTGT+TGG - Chr1:9055702-9055721 None:intergenic 35.0%
GACAAAAAAGTAGAAGCAGT+TGG - Chr1:9054335-9054354 None:intergenic 35.0%
GCACATTTGAACTCAAATCA+TGG - Chr1:9052558-9052577 None:intergenic 35.0%
GCATGAAATCTAATGAGATC+AGG + Chr1:9055885-9055904 MsG0180000639.01.T01:intron 35.0%
GGTTAATTACGTTAAGTGGA+TGG - Chr1:9052858-9052877 None:intergenic 35.0%
GTTCCTTTGTCTAAGAAACA+AGG - Chr1:9054741-9054760 None:intergenic 35.0%
GTTTCCATGTAATTGGCTAA+TGG - Chr1:9054454-9054473 None:intergenic 35.0%
TATTGTGACTGATACAGTGA+GGG + Chr1:9051880-9051899 MsG0180000639.01.T01:intron 35.0%
TCACTAACCTATTCTCTTTG+TGG + Chr1:9056495-9056514 MsG0180000639.01.T01:intron 35.0%
TCCATTACACAGAAGAAAGA+AGG + Chr1:9053373-9053392 MsG0180000639.01.T01:intron 35.0%
TCTTGAATCTGTGTATGAGT+TGG + Chr1:9053062-9053081 MsG0180000639.01.T01:intron 35.0%
TGACATAATTAGGACCAACT+AGG - Chr1:9055009-9055028 None:intergenic 35.0%
TGTCTTCTTAACATCCTCTT+TGG - Chr1:9053461-9053480 None:intergenic 35.0%
TTAAATCTCTCCAGTGTGAA+AGG + Chr1:9054425-9054444 MsG0180000639.01.T01:intron 35.0%
TTATGTCAGATGCAAGTTCT+TGG + Chr1:9055021-9055040 MsG0180000639.01.T01:intron 35.0%
TTATTTGCAGAATCCAACTC+TGG + Chr1:9056320-9056339 MsG0180000639.01.T01:intron 35.0%
TTTGCAAATCCATCAGTTCA+AGG - Chr1:9056389-9056408 None:intergenic 35.0%
! ACCTTAAGGCATTAGCTATA+TGG - Chr1:9052741-9052760 None:intergenic 35.0%
! AGCTAATGCCTTAAGGTTTT+GGG + Chr1:9052744-9052763 MsG0180000639.01.T01:intron 35.0%
! CCTTAAGGCATTAGCTATAT+GGG - Chr1:9052740-9052759 None:intergenic 35.0%
! GAAATGCTCTTTGAAGAAAC+TGG - Chr1:9056006-9056025 None:intergenic 35.0%
! GACTTGACTGTTTTCCTAAT+TGG - Chr1:9056036-9056055 None:intergenic 35.0%
! GGTATTGAAAATGGAGAAAG+AGG + Chr1:9055644-9055663 MsG0180000639.01.T01:intron 35.0%
! TAGCTAATGCCTTAAGGTTT+TGG + Chr1:9052743-9052762 MsG0180000639.01.T01:intron 35.0%
! TCGTTTGGTAATCAAACGTT+GGG - Chr1:9054921-9054940 None:intergenic 35.0%
! TGGGCCAAACTCTTTTATAT+AGG - Chr1:9052721-9052740 None:intergenic 35.0%
! TTCGTTTGGTAATCAAACGT+TGG - Chr1:9054922-9054941 None:intergenic 35.0%
!! ATCATCTTCTGAAGCTACAT+TGG - Chr1:9053416-9053435 None:intergenic 35.0%
!! CGTTGACTCTTGATATTGAT+AGG + Chr1:9055623-9055642 MsG0180000639.01.T01:intron 35.0%
!! GGACATTGATTCGAAGTTAA+AGG + Chr1:9054149-9054168 MsG0180000639.01.T01:CDS 35.0%
!! TAATTGTGGTCTTGTAGCAT+TGG + Chr1:9052787-9052806 MsG0180000639.01.T01:intron 35.0%
AAATGTGCACTTGAAAGTCG+TGG + Chr1:9052570-9052589 MsG0180000639.01.T01:intron 40.0%
AAATTCCCTGCTTTCAATGC+AGG + Chr1:9053552-9053571 MsG0180000639.01.T01:CDS 40.0%
AACCATCTTCTTTGCCTTTC+AGG + Chr1:9055787-9055806 MsG0180000639.01.T01:intron 40.0%
AACTACTGTCCTTGAACTGA+TGG + Chr1:9056377-9056396 MsG0180000639.01.T01:CDS 40.0%
AAGCTATCCAGATGAGCTTA+TGG + Chr1:9054602-9054621 MsG0180000639.01.T01:intron 40.0%
ACTCTCAACTCTCCAAATAC+AGG + Chr1:9053577-9053596 MsG0180000639.01.T01:CDS 40.0%
AGTAGCACAAACTTCTTCCA+AGG + Chr1:9055821-9055840 MsG0180000639.01.T01:CDS 40.0%
AGTTAATGTTCACAGACCCA+TGG - Chr1:9056230-9056249 None:intergenic 40.0%
ATTCACTGCAGTCAGTAAGT+TGG - Chr1:9055194-9055213 None:intergenic 40.0%
CACTAGTATTCATGTCAGAG+AGG + Chr1:9054209-9054228 MsG0180000639.01.T01:CDS 40.0%
CAGATGCAAGTTCTTGGAAA+TGG + Chr1:9055027-9055046 MsG0180000639.01.T01:intron 40.0%
CATCCTACAAGTCACAAGTA+CGG - Chr1:9056793-9056812 None:intergenic 40.0%
CCACACTATTGAACTGTCAT+AGG - Chr1:9056594-9056613 None:intergenic 40.0%
CCCATATAGCTAATGCCTTA+AGG + Chr1:9052737-9052756 MsG0180000639.01.T01:intron 40.0%
CCTATGACAGTTCAATAGTG+TGG + Chr1:9056591-9056610 MsG0180000639.01.T01:intron 40.0%
CTGCAAGGTTTCCATGTAAT+TGG - Chr1:9054461-9054480 None:intergenic 40.0%
CTTCTTAACATCCTCTTTGG+TGG - Chr1:9053458-9053477 None:intergenic 40.0%
GATCAATGAGATTCACAGCA+AGG - Chr1:9054889-9054908 None:intergenic 40.0%
GGTTAATGATGTTGAGGAGT+CGG - Chr1:9052837-9052856 None:intergenic 40.0%
GTCAGAACAAGCCTAAATTG+CGG + Chr1:9053084-9053103 MsG0180000639.01.T01:intron 40.0%
GTGGATGGTTAATGATGTTG+AGG - Chr1:9052843-9052862 None:intergenic 40.0%
GTTAATGATGTTGAGGAGTC+GGG - Chr1:9052836-9052855 None:intergenic 40.0%
TAACACATACTCCAGACAAG+AGG + Chr1:9055518-9055537 MsG0180000639.01.T01:CDS 40.0%
TATGAAGAGATTTGTGCTCC+TGG + Chr1:9055468-9055487 MsG0180000639.01.T01:CDS 40.0%
TCCTAGAAAAGAGATTCCAC+CGG - Chr1:9056634-9056653 None:intergenic 40.0%
TGGTAATCAAACGTTGGGAA+AGG - Chr1:9054916-9054935 None:intergenic 40.0%
TTAATGATGTTGAGGAGTCG+GGG - Chr1:9052835-9052854 None:intergenic 40.0%
TTTGTATAGTGCTCCAGAGT+TGG - Chr1:9056336-9056355 None:intergenic 40.0%
! ACAAGTAGATCAAGAAGCAC+CGG - Chr1:9056826-9056845 None:intergenic 40.0%
! ATTCCGTACTTGTGACTTGT+AGG + Chr1:9056787-9056806 MsG0180000639.01.T01:three_prime_UTR 40.0%
! TGGAAGAAGTTTGTGCTACT+TGG - Chr1:9055821-9055840 None:intergenic 40.0%
! TTTGTCGGTTGAAGTTTGTG+TGG + Chr1:9052659-9052678 MsG0180000639.01.T01:intron 40.0%
!! AAAAGAGATTCCACCGGTTT+CGG - Chr1:9056628-9056647 None:intergenic 40.0%
!! TTTGGTGGTGAAAACTTGCA+AGG - Chr1:9053443-9053462 None:intergenic 40.0%
!!! TCATGCTTATTTTGACCGCA+GGG - Chr1:9055871-9055890 None:intergenic 40.0%
!!! TTCATGCTTATTTTGACCGC+AGG - Chr1:9055872-9055891 None:intergenic 40.0%
AATCTCTCCAGTGTGAAAGG+AGG + Chr1:9054428-9054447 MsG0180000639.01.T01:intron 45.0%
ACAGCAAGGTAAAGTGTGTC+TGG - Chr1:9054875-9054894 None:intergenic 45.0%
ACTTGGATGAACCTCCTGAA+AGG - Chr1:9055804-9055823 None:intergenic 45.0%
AGTACGGAATAGCCCGTAAT+TGG - Chr1:9056777-9056796 None:intergenic 45.0%
AGTGTCCTGCATTGAAAGCA+GGG - Chr1:9053560-9053579 None:intergenic 45.0%
CATCTCGACCCAAAACCTTA+AGG - Chr1:9052755-9052774 None:intergenic 45.0%
CATCTTCTTTGCCTTTCAGG+AGG + Chr1:9055790-9055809 MsG0180000639.01.T01:intron 45.0%
CTCCTGAAAGGCAAAGAAGA+TGG - Chr1:9055792-9055811 None:intergenic 45.0%
GAGAAACTAAGTGCCTCAGT+TGG + Chr1:9054114-9054133 MsG0180000639.01.T01:CDS 45.0%
GAGCTGTCTAACTCATCCAA+CGG - Chr1:9055102-9055121 None:intergenic 45.0%
GAGGCCATTAGCCAATTACA+TGG + Chr1:9054447-9054466 MsG0180000639.01.T01:CDS 45.0%
GGGGCATAAGAAGTCCAAAT+AGG - Chr1:9054180-9054199 None:intergenic 45.0%
TAATGATGTTGAGGAGTCGG+GGG - Chr1:9052834-9052853 None:intergenic 45.0%
TACAGTGAGGGAGAGCAAAA+TGG + Chr1:9051892-9051911 MsG0180000639.01.T01:intron 45.0%
TCTAATGAGATCAGGACCGA+TGG + Chr1:9055893-9055912 MsG0180000639.01.T01:intron 45.0%
TGCATTGAGACGACAACCTT+TGG - Chr1:9056418-9056437 None:intergenic 45.0%
TGCGGTGTCTACCATAATTG+TGG + Chr1:9052773-9052792 MsG0180000639.01.T01:intron 45.0%
! ACCGGTGGAATCTCTTTTCT+AGG + Chr1:9056630-9056649 MsG0180000639.01.T01:CDS 45.0%
! AGCAGGGAATTTTCCACAGA+AGG - Chr1:9053544-9053563 None:intergenic 45.0%
! CGTACTTGTGACTTGTAGGA+TGG + Chr1:9056791-9056810 MsG0180000639.01.T01:three_prime_UTR 45.0%
! GCAAGTTTTCACCACCAAAG+AGG + Chr1:9053444-9053463 MsG0180000639.01.T01:CDS 45.0%
! GCTCTGCTAAATAGTTTGCC+AGG - Chr1:9056109-9056128 None:intergenic 45.0%
! TCAAGCTGATCTGGAATTCC+TGG + Chr1:9056088-9056107 MsG0180000639.01.T01:CDS 45.0%
!! AGCAAGGGCTAGAGTTTTGA+AGG + Chr1:9051949-9051968 MsG0180000639.01.T01:CDS 45.0%
!! CTGCTGTGTTACTTGCAAGA+TGG + Chr1:9056183-9056202 MsG0180000639.01.T01:CDS 45.0%
!!! TAAGGTTTTGGGTCGAGATG+CGG + Chr1:9052755-9052774 MsG0180000639.01.T01:intron 45.0%
!!! TATTTTGACCGCAGGGAATC+TGG - Chr1:9055864-9055883 None:intergenic 45.0%
AAACGAAGGCTGCAGTTGCT+TGG + Chr1:9054935-9054954 MsG0180000639.01.T01:CDS 50.0%
AAGCAACTGCAGCCTTCGTT+TGG - Chr1:9054936-9054955 None:intergenic 50.0%
ACTAAGTGCCTCAGTTGGCT+TGG + Chr1:9054119-9054138 MsG0180000639.01.T01:CDS 50.0%
CACAATTCCCAAGCCAACTG+AGG - Chr1:9054130-9054149 None:intergenic 50.0%
CACAGAAGGTTGCACTTGCA+AGG - Chr1:9053530-9053549 None:intergenic 50.0%
CACAGCAGATGCAGCTATCT+TGG - Chr1:9056171-9056190 None:intergenic 50.0%
CTAATGGCCTCCTTTCACAC+TGG - Chr1:9054438-9054457 None:intergenic 50.0%
CTTGCAAGTGCAACCTTCTG+TGG + Chr1:9053528-9053547 MsG0180000639.01.T01:CDS 50.0%
GAATTTGTCTCCGAAACCGG+TGG + Chr1:9056615-9056634 MsG0180000639.01.T01:CDS 50.0%
GACGTGTCCATAAGCTCATC+TGG - Chr1:9054612-9054631 None:intergenic 50.0%
GAGTGTCCTGCATTGAAAGC+AGG - Chr1:9053561-9053580 None:intergenic 50.0%
GCAGATGCAGCTATCTTGGA+AGG - Chr1:9056167-9056186 None:intergenic 50.0%
GGCGAATTTGTCTCCGAAAC+CGG + Chr1:9056612-9056631 MsG0180000639.01.T01:CDS 50.0%
TATCCGAACCAGATTCCCTG+CGG + Chr1:9055853-9055872 MsG0180000639.01.T01:intron 50.0%
TCAGAGAGAGAGAGAGAGAG+AGG - Chr1:9051552-9051571 None:intergenic 50.0%
TCAGGACCGATGGATCAAGA+CGG + Chr1:9055903-9055922 MsG0180000639.01.T01:intron 50.0%
TGTAGGATGGTACCAACCTC+CGG + Chr1:9056804-9056823 MsG0180000639.01.T01:three_prime_UTR 50.0%
TGTGAGCCGTCTTGATCCAT+CGG - Chr1:9055912-9055931 None:intergenic 50.0%
TTGCAGCAAGACATCACTCC+CGG + Chr1:9054475-9054494 MsG0180000639.01.T01:CDS 50.0%
! ATGGATGCTCTGACTGGTTG+AGG - Chr1:9056211-9056230 None:intergenic 50.0%
! CAACCAGTCAGAGCATCCAT+GGG + Chr1:9056211-9056230 MsG0180000639.01.T01:CDS 50.0%
! CTAAGTGCCTCAGTTGGCTT+GGG + Chr1:9054120-9054139 MsG0180000639.01.T01:CDS 50.0%
! TCAACCAGTCAGAGCATCCA+TGG + Chr1:9056210-9056229 MsG0180000639.01.T01:CDS 50.0%
! TCAGGTTGCTCAAGCTGATC+TGG + Chr1:9056079-9056098 MsG0180000639.01.T01:intron 50.0%
! TGGATGCTCTGACTGGTTGA+GGG - Chr1:9056210-9056229 None:intergenic 50.0%
!! AGTAGATCAAGAAGCACCGG+AGG - Chr1:9056823-9056842 None:intergenic 50.0%
!! CTCAGTTGGCTTGGGAATTG+TGG + Chr1:9054128-9054147 MsG0180000639.01.T01:CDS 50.0%
!! GATTCTGGTTGACTGGCTTG+TGG + Chr1:9054507-9054526 MsG0180000639.01.T01:CDS 50.0%
AACCAGAATCCCCCTCATGC+CGG - Chr1:9054497-9054516 None:intergenic 55.0%
AAGACATCACTCCCGGCATG+AGG + Chr1:9054482-9054501 MsG0180000639.01.T01:CDS 55.0%
AGACATCACTCCCGGCATGA+GGG + Chr1:9054483-9054502 MsG0180000639.01.T01:CDS 55.0%
AGACCCATGGATGCTCTGAC+TGG - Chr1:9056217-9056236 None:intergenic 55.0%
ATGTGAGGGTGACTCGAGCA+AGG + Chr1:9051933-9051952 MsG0180000639.01.T01:CDS 55.0%
CTGCAACTGCGCCGCAATTT+AGG - Chr1:9053098-9053117 None:intergenic 55.0%
GGGAGTGATGTCTTGCTGCA+AGG - Chr1:9054476-9054495 None:intergenic 55.0%
TGACCGCAGGGAATCTGGTT+CGG - Chr1:9055859-9055878 None:intergenic 55.0%
TGTGAGGGTGACTCGAGCAA+GGG + Chr1:9051934-9051953 MsG0180000639.01.T01:CDS 55.0%
! TGAGGGGGATTCTGGTTGAC+TGG + Chr1:9054500-9054519 MsG0180000639.01.T01:CDS 55.0%
!! GATCAAGAAGCACCGGAGGT+TGG - Chr1:9056819-9056838 None:intergenic 55.0%
!! TCTGGTTGACTGGCTTGTGG+AGG + Chr1:9054510-9054529 MsG0180000639.01.T01:CDS 55.0%
ACATCACTCCCGGCATGAGG+GGG + Chr1:9054485-9054504 MsG0180000639.01.T01:CDS 60.0%
ACCAGAATCCCCCTCATGCC+GGG - Chr1:9054496-9054515 None:intergenic 60.0%
GACATCACTCCCGGCATGAG+GGG + Chr1:9054484-9054503 MsG0180000639.01.T01:CDS 60.0%
GGTCTGCGCAGCTGCAATCG+CGG - Chr1:9053213-9053232 None:intergenic 65.0%
TCCCGGCATGAGGGGGATTC+TGG + Chr1:9054492-9054511 MsG0180000639.01.T01:CDS 65.0%
!! TGAGGAGTCGGGGGAGCATC+AGG - Chr1:9052825-9052844 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 9051507 9056953 9051507 ID=MsG0180000639.01;Name=MsG0180000639.01
Chr1 mRNA 9051507 9056953 9051507 ID=MsG0180000639.01.T01;Parent=MsG0180000639.01;Name=MsG0180000639.01.T01;_AED=0.36;_eAED=0.36;_QI=35|1|1|1|0.90|0.83|12|302|419
Chr1 exon 9056601 9056953 9056601 ID=MsG0180000639.01.T01:exon:2105;Parent=MsG0180000639.01.T01
Chr1 exon 9056330 9056464 9056330 ID=MsG0180000639.01.T01:exon:2104;Parent=MsG0180000639.01.T01
Chr1 exon 9056083 9056232 9056083 ID=MsG0180000639.01.T01:exon:2103;Parent=MsG0180000639.01.T01
Chr1 exon 9055809 9055842 9055809 ID=MsG0180000639.01.T01:exon:2102;Parent=MsG0180000639.01.T01
Chr1 exon 9055645 9055721 9055645 ID=MsG0180000639.01.T01:exon:2101;Parent=MsG0180000639.01.T01
Chr1 exon 9055464 9055539 9055464 ID=MsG0180000639.01.T01:exon:2100;Parent=MsG0180000639.01.T01
Chr1 exon 9054848 9054981 9054848 ID=MsG0180000639.01.T01:exon:2099;Parent=MsG0180000639.01.T01
Chr1 exon 9054439 9054531 9054439 ID=MsG0180000639.01.T01:exon:2098;Parent=MsG0180000639.01.T01
Chr1 exon 9054097 9054230 9054097 ID=MsG0180000639.01.T01:exon:2097;Parent=MsG0180000639.01.T01
Chr1 exon 9053385 9053598 9053385 ID=MsG0180000639.01.T01:exon:2096;Parent=MsG0180000639.01.T01
Chr1 exon 9051897 9052072 9051897 ID=MsG0180000639.01.T01:exon:2095;Parent=MsG0180000639.01.T01
Chr1 exon 9051507 9051527 9051507 ID=MsG0180000639.01.T01:exon:2094;Parent=MsG0180000639.01.T01
Chr1 five_prime_UTR 9051507 9051527 9051507 ID=MsG0180000639.01.T01:five_prime_utr;Parent=MsG0180000639.01.T01
Chr1 five_prime_UTR 9051897 9051910 9051897 ID=MsG0180000639.01.T01:five_prime_utr;Parent=MsG0180000639.01.T01
Chr1 CDS 9051911 9052072 9051911 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9053385 9053598 9053385 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9054097 9054230 9054097 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9054439 9054531 9054439 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9054848 9054981 9054848 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9055464 9055539 9055464 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9055645 9055721 9055645 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9055809 9055842 9055809 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9056083 9056232 9056083 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9056330 9056464 9056330 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 CDS 9056601 9056651 9056601 ID=MsG0180000639.01.T01:cds;Parent=MsG0180000639.01.T01
Chr1 three_prime_UTR 9056652 9056953 9056652 ID=MsG0180000639.01.T01:three_prime_utr;Parent=MsG0180000639.01.T01
Gene Sequence

>MsG0180000639.01.T01

ATGGACAAAGAAAATGGTGTGAATGTGAGGGTGACTCGAGCAAGGGCTAGAGTTTTGAAGGAGTCTTCAAGAAATGAACAAGCTGTTGTTATTGGACTGAGAGATGTGACCAACATTTCTGCAAAATCACATCATAAGCGTACTCATACATCAAATTTTGAGAAGAAAGAAGGTTCTAAGAAGAGAAAGACCAATGTAGCTTCAGAAGATGATGTCTCCTTGCAAGTTTTCACCACCAAAGAGGATGTTAAGAAGACAGAGTTAGCTAAAGATTCTTCAACATCAACAATGACAAAGAAAGAGTCCTTGCAAGTGCAACCTTCTGTGGAAAATTCCCTGCTTTCAATGCAGGACACTCTCAACTCTCCAAATACAGACATAAATTTGATATGTGAGAAACTAAGTGCCTCAGTTGGCTTGGGAATTGTGGACATTGATTCGAAGTTAAAGGATTCTCCTATTTGGACTTCTTATGCCCCTGATATATACACTAGTATTCATGTCAGAGAGTGTGAAAGGAGGCCATTAGCCAATTACATGGAAACCTTGCAGCAAGACATCACTCCCGGCATGAGGGGGATTCTGGTTGACTGGCTTGTGGAGGTTGCTGATGAGTTTAAACTAGTTCCAGACACACTTTACCTTGCTGTGAATCTCATTGATCGATTCCTTTCCCAACGTTTGATTACCAAACGAAGGCTGCAGTTGCTTGGTATTACTTGCATGCTGATTTCATCTAAGTATGAAGAGATTTGTGCTCCTGGAGTTGAAGACTTTTGCGTCATCACAGATAACACATACTCCAGACAAGAGGTATTGAAAATGGAGAAAGAGGTGCTAAATCTTCTGCATTTTCAATTAGCTGTTCCAACAATCAAGACATTTCTCAGGAGGTTCATCCAAGTAGCACAAACTTCTTCCAAGGTTGCTCAAGCTGATCTGGAATTCCTGGCAAACTATTTAGCAGAGCTTGCACTTGTTGAATACAGCTTCTTGCAGTTTCAACCTTCCAAGATAGCTGCATCTGCTGTGTTACTTGCAAGATGGACCCTCAACCAGTCAGAGCATCCATGGAATCCAACTCTGGAGCACTATACAAATTACAAAGCATCAGAGCTGAAAACTACTGTCCTTGAACTGATGGATTTGCAAATTAACACCAAAGGTTGTCGTCTCAATGCAGTACGTGAAAAATATCAACATCAGAAGTTCAATAGTGTGGCGAATTTGTCTCCGAAACCGGTGGAATCTCTTTTCTAG

Protein sequence

>MsG0180000639.01.T01

MDKENGVNVRVTRARARVLKESSRNEQAVVIGLRDVTNISAKSHHKRTHTSNFEKKEGSKKRKTNVASEDDVSLQVFTTKEDVKKTELAKDSSTSTMTKKESLQVQPSVENSLLSMQDTLNSPNTDINLICEKLSASVGLGIVDIDSKLKDSPIWTSYAPDIYTSIHVRECERRPLANYMETLQQDITPGMRGILVDWLVEVADEFKLVPDTLYLAVNLIDRFLSQRLITKRRLQLLGITCMLISSKYEEICAPGVEDFCVITDNTYSRQEVLKMEKEVLNLLHFQLAVPTIKTFLRRFIQVAQTSSKVAQADLEFLANYLAELALVEYSFLQFQPSKIAASAVLLARWTLNQSEHPWNPTLEHYTNYKASELKTTVLELMDLQINTKGCRLNAVREKYQHQKFNSVANLSPKPVESLF*