AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001091.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001091.01.T02 MTR_1g030430 66.406 256 15 4 1 256 1 185 2.24e-106 306
MsG0180001091.01.T02 MTR_3g109250 37.200 250 87 4 1 250 1 180 8.95e-45 150
MsG0180001091.01.T02 MTR_1g009210 47.664 107 54 1 147 253 78 182 3.97e-24 96.7
MsG0180001091.01.T02 MTR_1g009210 69.388 49 15 0 1 49 1 49 4.79e-18 80.1
MsG0180001091.01.T01 MTR_1g030430 66.406 256 15 4 1 256 1 185 2.24e-106 306
MsG0180001091.01.T01 MTR_3g109250 37.200 250 87 4 1 250 1 180 8.95e-45 150
MsG0180001091.01.T01 MTR_1g009210 47.664 107 54 1 147 253 78 182 3.97e-24 96.7
MsG0180001091.01.T01 MTR_1g009210 69.388 49 15 0 1 49 1 49 4.79e-18 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001091.01.T02 AT1G44790 46.875 256 65 4 1 256 1 185 6.65e-68 209
MsG0180001091.01.T02 AT5G26220 35.714 252 92 5 1 252 1 182 3.64e-41 141
MsG0180001091.01.T02 AT5G26220 34.836 244 89 4 1 244 1 174 2.90e-39 135
MsG0180001091.01.T02 AT4G31290 50.000 108 53 1 147 254 78 184 2.98e-27 105
MsG0180001091.01.T02 AT4G31290 61.224 49 19 0 1 49 1 49 3.59e-15 72.8
MsG0180001091.01.T01 AT1G44790 46.875 256 65 4 1 256 1 185 6.65e-68 209
MsG0180001091.01.T01 AT5G26220 35.714 252 92 5 1 252 1 182 3.64e-41 141
MsG0180001091.01.T01 AT5G26220 34.836 244 89 4 1 244 1 174 2.90e-39 135
MsG0180001091.01.T01 AT4G31290 50.000 108 53 1 147 254 78 184 2.98e-27 105
MsG0180001091.01.T01 AT4G31290 61.224 49 19 0 1 49 1 49 3.59e-15 72.8

Find 11 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAAATAAGTACTGAAAT+TGG 0.152097 1:+15841920 None:intergenic
AATTCTTTCCAGAATGTTAT+TGG 0.217540 1:-15842045 MsG0180001091.01.T01:three_prime_UTR
AATCCATTATTAAAATCTAT+TGG 0.294557 1:-15842075 MsG0180001091.01.T01:three_prime_UTR
ATTATCTCCCAATAACATTC+TGG 0.328711 1:+15842037 None:intergenic
ATTCTTTCCAGAATGTTATT+GGG 0.359718 1:-15842044 MsG0180001091.01.T01:three_prime_UTR
TATAAATAAGTACTGAAATT+GGG 0.409080 1:+15841921 None:intergenic
TTGATCTTGCAAATGAAGTC+AGG 0.482220 1:-15842169 MsG0180001091.01.T01:CDS
GATCAATAACATGCTTGTCT+TGG 0.509648 1:+15842186 None:intergenic
AAGAACAATGAATGCTTCAT+CGG 0.562447 1:-15842133 MsG0180001091.01.T01:exon
TTAAGTTATTTCCATGACAA+AGG 0.573493 1:-15841886 MsG0180001091.01.T01:three_prime_UTR
TACATGAGATGTTATAGACA+TGG 0.669125 1:+15842003 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTCTAAATTTTTTTTTT+TGG + Chr1:15842566-15842585 None:intergenic 10.0%
!!! TCATTATTATATAATTGTTT+TGG - Chr1:15845410-15845429 MsG0180001091.01.T01:intron 10.0%
!!! TTTTTAAAATCTATAACAAA+CGG - Chr1:15842713-15842732 MsG0180001091.01.T01:intron 10.0%
!! AATCCATTATTAAAATCTAT+TGG - Chr1:15846542-15846561 MsG0180001091.01.T01:intron 15.0%
!! ATTATCTATTTAAATGAGTT+AGG - Chr1:15844480-15844499 MsG0180001091.01.T01:intron 15.0%
!!! TATAAATAAGTACTGAAATT+GGG + Chr1:15846699-15846718 None:intergenic 15.0%
!!! TTACTTTTAATTCTATATGA+TGG - Chr1:15844760-15844779 MsG0180001091.01.T01:intron 15.0%
!!! TTATAAATAAGTACTGAAAT+TGG + Chr1:15846700-15846719 None:intergenic 15.0%
!!! TTCTATCTTTTTCATATTAT+AGG - Chr1:15846247-15846266 MsG0180001091.01.T01:intron 15.0%
!!! TTTCCAATAGATTTTAATAA+TGG + Chr1:15846548-15846567 None:intergenic 15.0%
!! AAACAAGAGAAAACAAATAT+GGG - Chr1:15845805-15845824 MsG0180001091.01.T01:intron 20.0%
!! AATAATGAATACTCAAGTAA+AGG + Chr1:15845398-15845417 None:intergenic 20.0%
!! AATGCAATCAATATTTGAAA+TGG - Chr1:15843753-15843772 MsG0180001091.01.T01:intron 20.0%
!! ATTAAGTACTTATCAAGATT+GGG - Chr1:15843508-15843527 MsG0180001091.01.T01:intron 20.0%
!! ATTGAATACAACTACATTTA+AGG + Chr1:15843079-15843098 None:intergenic 20.0%
!! CATGATAAGTTAAATCTAAA+AGG - Chr1:15845491-15845510 MsG0180001091.01.T01:intron 20.0%
!! GTAAAACCATTATGAATAAA+AGG - Chr1:15846044-15846063 MsG0180001091.01.T01:intron 20.0%
!! TAAACAAGAGAAAACAAATA+TGG - Chr1:15845804-15845823 MsG0180001091.01.T01:intron 20.0%
!! TATGATATATGACAACATTA+TGG - Chr1:15844376-15844395 MsG0180001091.01.T01:intron 20.0%
!! TCAGCAAAAGTAATTAATTA+TGG + Chr1:15842294-15842313 None:intergenic 20.0%
!! TCATTCCTTATATATTTCTT+GGG - Chr1:15844592-15844611 MsG0180001091.01.T01:intron 20.0%
!! TTCATTCCTTATATATTTCT+TGG - Chr1:15844591-15844610 MsG0180001091.01.T01:intron 20.0%
!!! AAAAGGAAATTTTGTTATCT+TGG - Chr1:15844188-15844207 MsG0180001091.01.T01:intron 20.0%
!!! CATATTTTTACATCAAGTAT+TGG - Chr1:15846110-15846129 MsG0180001091.01.T01:intron 20.0%
!!! GAAAGCATTATTGAAAATTT+AGG + Chr1:15844574-15844593 None:intergenic 20.0%
!!! GGAACTTGATAATTAAAAAT+TGG + Chr1:15842273-15842292 None:intergenic 20.0%
!!! TTAATTACTTTTGCTGATTA+AGG - Chr1:15842297-15842316 MsG0180001091.01.T01:CDS 20.0%
!!! TTTTATAATCAGTAACAAAC+AGG + Chr1:15842353-15842372 None:intergenic 20.0%
! AAGATAGAAATCAAACTCAA+AGG + Chr1:15846236-15846255 None:intergenic 25.0%
! AAGGTCAATGTAAATTATCT+AGG - Chr1:15845282-15845301 MsG0180001091.01.T01:CDS 25.0%
! AATTCTTTCCAGAATGTTAT+TGG - Chr1:15846572-15846591 MsG0180001091.01.T01:CDS 25.0%
! ACAAAGTTCAATTCAACAAA+TGG + Chr1:15843457-15843476 None:intergenic 25.0%
! ACGTAAAAAATGTAACAAAC+AGG - Chr1:15842796-15842815 MsG0180001091.01.T01:intron 25.0%
! AGATTTAGAGATTAATGAGT+TGG - Chr1:15844346-15844365 MsG0180001091.01.T01:intron 25.0%
! ATTCTTTCCAGAATGTTATT+GGG - Chr1:15846573-15846592 MsG0180001091.01.T01:CDS 25.0%
! CACATATTACTTCAAAAAGT+CGG - Chr1:15843295-15843314 MsG0180001091.01.T01:intron 25.0%
! CATTAAGTACTTATCAAGAT+TGG - Chr1:15843507-15843526 MsG0180001091.01.T01:intron 25.0%
! CGAAGATAAAAAGTTAAATG+TGG + Chr1:15843628-15843647 None:intergenic 25.0%
! CTCTTGAAAAAATTGTTGAT+TGG - Chr1:15843400-15843419 MsG0180001091.01.T01:intron 25.0%
! GAATCATAATACCTAGATAT+AGG - Chr1:15845584-15845603 MsG0180001091.01.T01:intron 25.0%
! GACTATAATTATAAGTCTCA+AGG + Chr1:15844806-15844825 None:intergenic 25.0%
! GTTACTTATTCCACTAATAA+AGG - Chr1:15845094-15845113 MsG0180001091.01.T01:intron 25.0%
! TGTTACAAAGAATGTTATGA+TGG + Chr1:15844629-15844648 None:intergenic 25.0%
! TTAATGTAATAACTGCTGTA+TGG - Chr1:15843481-15843500 MsG0180001091.01.T01:CDS 25.0%
! TTATCTTCGCTTAATTACAT+TGG - Chr1:15843639-15843658 MsG0180001091.01.T01:CDS 25.0%
! TTCCAATTAAACTCAGAATT+TGG - Chr1:15841887-15841906 MsG0180001091.01.T01:three_prime_UTR 25.0%
! TTTGATAAAAAAATGCTGTG+TGG - Chr1:15843187-15843206 MsG0180001091.01.T01:intron 25.0%
!! AATAAGTTGAAAACAACTTG+TGG - Chr1:15842964-15842983 MsG0180001091.01.T01:intron 25.0%
!! CATTTTGCAAAAGGTTAAAA+AGG + Chr1:15843238-15843257 None:intergenic 25.0%
!! CTTTTTAACCTTTTGCAAAA+TGG - Chr1:15843236-15843255 MsG0180001091.01.T01:intron 25.0%
!! GTTTCTTTCATAGTTTTTCT+AGG + Chr1:15844317-15844336 None:intergenic 25.0%
!! TATTTACTAGTCTCAATTTG+TGG - Chr1:15845360-15845379 MsG0180001091.01.T01:intron 25.0%
!! TCAAACTTTTAACCAAGTTT+TGG - Chr1:15843914-15843933 MsG0180001091.01.T01:intron 25.0%
!! TTAAGTTATTTCCATGACAA+AGG - Chr1:15846731-15846750 MsG0180001091.01.T01:five_prime_UTR 25.0%
!! TTGAATTTGAAATAGAACCT+TGG + Chr1:15842092-15842111 None:intergenic 25.0%
!! TTTTGACAAGTATTAGCTAT+TGG + Chr1:15844151-15844170 None:intergenic 25.0%
!!! CTTTATTTTATCCTTTGTCA+TGG + Chr1:15846745-15846764 None:intergenic 25.0%
!!! CTTTTAATTCTATATGATGG+CGG - Chr1:15844763-15844782 MsG0180001091.01.T01:intron 25.0%
!!! TCACTTTTTGTATTTTTGTG+TGG - Chr1:15845626-15845645 MsG0180001091.01.T01:intron 25.0%
!!! TTACATCAAGTATTGGTTAA+TGG - Chr1:15846117-15846136 MsG0180001091.01.T01:intron 25.0%
!!! TTTAGAGATTTTTTTGTCCT+TGG - Chr1:15842404-15842423 MsG0180001091.01.T01:intron 25.0%
AAAGATCCTTACCTATTTGA+AGG + Chr1:15846341-15846360 None:intergenic 30.0%
AAAGGTTCAACCTTTATTAG+TGG + Chr1:15845107-15845126 None:intergenic 30.0%
AAGAACAATGAATGCTTCAT+CGG - Chr1:15846484-15846503 MsG0180001091.01.T01:intron 30.0%
AAGGGTTCAAAATTTAGCAT+TGG - Chr1:15843966-15843985 MsG0180001091.01.T01:intron 30.0%
AATGAACCTAAATTTCCACA+GGG + Chr1:15846200-15846219 None:intergenic 30.0%
AGTAAGCTCCTGAAAAAAAA+AGG + Chr1:15845125-15845144 None:intergenic 30.0%
ATCTCTATGGGATAATCTAT+TGG + Chr1:15844038-15844057 None:intergenic 30.0%
ATGTAGTCAATTCACTTAGT+GGG - Chr1:15844412-15844431 MsG0180001091.01.T01:intron 30.0%
ATTATCTCCCAATAACATTC+TGG + Chr1:15846583-15846602 None:intergenic 30.0%
ATTCTCACATTAGATGACTT+TGG + Chr1:15844516-15844535 None:intergenic 30.0%
CATAGCTAATTAGATCATTG+TGG - Chr1:15845226-15845245 MsG0180001091.01.T01:intron 30.0%
GGATACCCAAGAAATATATA+AGG + Chr1:15844600-15844619 None:intergenic 30.0%
TAATGAACCTAAATTTCCAC+AGG + Chr1:15846201-15846220 None:intergenic 30.0%
TACATGAGATGTTATAGACA+TGG + Chr1:15846617-15846636 None:intergenic 30.0%
TAGCAATGACTAATCTCTAT+GGG + Chr1:15844050-15844069 None:intergenic 30.0%
TCTTACGTCATTTCTACAAT+AGG - Chr1:15844535-15844554 MsG0180001091.01.T01:intron 30.0%
TGAAATTCTCAGCATACAAA+AGG - Chr1:15844171-15844190 MsG0180001091.01.T01:intron 30.0%
TGCCAAATTCTGAGTTTAAT+TGG + Chr1:15841892-15841911 None:intergenic 30.0%
TTAGCAATGACTAATCTCTA+TGG + Chr1:15844051-15844070 None:intergenic 30.0%
! AAAATCATCTGAAACTCCAA+TGG - Chr1:15845694-15845713 MsG0180001091.01.T01:intron 30.0%
! AACTACATTTAAGGCTTGTT+TGG + Chr1:15843070-15843089 None:intergenic 30.0%
! CACACACCTTTTATTCATAA+TGG + Chr1:15846053-15846072 None:intergenic 30.0%
! GTATCTTTTCCTACTTGAAA+AGG - Chr1:15846311-15846330 MsG0180001091.01.T01:intron 30.0%
! TAAGCTAACCATTTTGCAAA+AGG + Chr1:15843247-15843266 None:intergenic 30.0%
! TCAAGTTGTTTATCCAAACA+AGG + Chr1:15842323-15842342 None:intergenic 30.0%
! TTTTCTTGGATACACATACT+AGG + Chr1:15843113-15843132 None:intergenic 30.0%
!! ACCTTTTCAAGGTGAATAAT+GGG + Chr1:15842518-15842537 None:intergenic 30.0%
!! AGTTTCAGATGATTTTCAAG+TGG + Chr1:15845690-15845709 None:intergenic 30.0%
!! CTTTTAACCAAGTTTTGGTA+TGG - Chr1:15843919-15843938 MsG0180001091.01.T01:intron 30.0%
!!! AATTTTTTCAAGAGCCTACA+CGG + Chr1:15843394-15843413 None:intergenic 30.0%
!!! AGGTTGAACCTTTTTTTTTC+AGG - Chr1:15845114-15845133 MsG0180001091.01.T01:intron 30.0%
!!! ATCTTCATGCTTTTTTCTGA+TGG - Chr1:15842154-15842173 MsG0180001091.01.T01:CDS 30.0%
!!! CTTTTTTCTGATGGGTTTTT+AGG - Chr1:15842163-15842182 MsG0180001091.01.T01:CDS 30.0%
!!! GAAAGTCATACTAGTTTTCT+TGG + Chr1:15843127-15843146 None:intergenic 30.0%
!!! GGGTTTTAGTTAGTCTTTTA+AGG - Chr1:15843528-15843547 MsG0180001091.01.T01:intron 30.0%
!!! TCTTCATGCTTTTTTCTGAT+GGG - Chr1:15842155-15842174 MsG0180001091.01.T01:CDS 30.0%
!!! TTTTGTTTTGATCACCTCTT+AGG - Chr1:15846405-15846424 MsG0180001091.01.T01:CDS 30.0%
!!! TTTTTTTTGGTCAAGTAAGC+TGG + Chr1:15842553-15842572 None:intergenic 30.0%
AACATGGCAATATGGGTATT+TGG - Chr1:15841982-15842001 MsG0180001091.01.T01:intron 35.0%
AACCACAAACATGGCAATAT+GGG - Chr1:15841975-15841994 MsG0180001091.01.T01:intron 35.0%
ACCCAAGAAAGTTCAAACTT+GGG - Chr1:15844104-15844123 MsG0180001091.01.T01:intron 35.0%
ACTAATTCATAAGCCTCCTA+AGG + Chr1:15845445-15845464 None:intergenic 35.0%
ACTTGATTGTCTTGACTGTA+GGG - Chr1:15843360-15843379 MsG0180001091.01.T01:CDS 35.0%
AGACAAAATTGCCATCAATC+AGG + Chr1:15845785-15845804 None:intergenic 35.0%
AGGAAAAGATACTCTCTGTT+AGG + Chr1:15846303-15846322 None:intergenic 35.0%
AGTGACGTTTGATGAAGAAA+GGG + Chr1:15844906-15844925 None:intergenic 35.0%
CACTAAGTGAATTGACTACA+TGG + Chr1:15844413-15844432 None:intergenic 35.0%
CAGTTACAATACATGAACCA+TGG + Chr1:15846167-15846186 None:intergenic 35.0%
CATGTAGTCAATTCACTTAG+TGG - Chr1:15844411-15844430 MsG0180001091.01.T01:intron 35.0%
CATTTGGCCTCAAAAAATCT+TGG + Chr1:15845044-15845063 None:intergenic 35.0%
GATCAATAACATGCTTGTCT+TGG + Chr1:15846434-15846453 None:intergenic 35.0%
GCAAAAACACAACACTAAGA+AGG + Chr1:15843665-15843684 None:intergenic 35.0%
GCAATATGGGTATTTGGTTA+CGG - Chr1:15841988-15842007 MsG0180001091.01.T01:intron 35.0%
GCTTAAGTAGAGGTAAAAGT+TGG + Chr1:15844830-15844849 None:intergenic 35.0%
GTCTCAAGGTTTAAGTATCT+TGG + Chr1:15844792-15844811 None:intergenic 35.0%
TACCCAAGAAAGTTCAAACT+TGG - Chr1:15844103-15844122 MsG0180001091.01.T01:intron 35.0%
TACGTCATTTCTACAATAGG+TGG - Chr1:15844538-15844557 MsG0180001091.01.T01:intron 35.0%
TACTTGATTGTCTTGACTGT+AGG - Chr1:15843359-15843378 MsG0180001091.01.T01:CDS 35.0%
TAGTGACGTTTGATGAAGAA+AGG + Chr1:15844907-15844926 None:intergenic 35.0%
TTACATTGACCTTCTTGTCT+GGG + Chr1:15845275-15845294 None:intergenic 35.0%
TTAGCTTAGAATGCGAGAAA+TGG - Chr1:15843259-15843278 MsG0180001091.01.T01:intron 35.0%
TTAGGTTCTACTGATCATAG+AGG - Chr1:15842181-15842200 MsG0180001091.01.T01:CDS 35.0%
TTCAGCATGATCCTATATCT+AGG + Chr1:15845598-15845617 None:intergenic 35.0%
TTCATAACCAACCACAAACA+TGG - Chr1:15841966-15841985 MsG0180001091.01.T01:intron 35.0%
TTCATCAAACGTCACTATGT+CGG - Chr1:15844910-15844929 MsG0180001091.01.T01:intron 35.0%
TTGATCTTGCAAATGAAGTC+AGG - Chr1:15846448-15846467 MsG0180001091.01.T01:intron 35.0%
TTTACATTGACCTTCTTGTC+TGG + Chr1:15845276-15845295 None:intergenic 35.0%
! AGCTAGAATTCACCTTTTCA+AGG + Chr1:15842529-15842548 None:intergenic 35.0%
! GACAAGCATTGTTATATGCA+GGG - Chr1:15842430-15842449 MsG0180001091.01.T01:intron 35.0%
! GATACTTACTCTGTTTTGCA+AGG - Chr1:15843775-15843794 MsG0180001091.01.T01:intron 35.0%
! GATTAGTCATTGCTAAACTG+CGG - Chr1:15844055-15844074 MsG0180001091.01.T01:intron 35.0%
! GGTTCAAAATTTAGCATTGG+TGG - Chr1:15843969-15843988 MsG0180001091.01.T01:intron 35.0%
! GGTTCTTTGATTTCAAAAGC+TGG - Chr1:15842009-15842028 MsG0180001091.01.T01:three_prime_UTR 35.0%
!! AATTTAGCATTGGTGGTGTA+TGG - Chr1:15843976-15843995 MsG0180001091.01.T01:intron 35.0%
!! AGAATGTTATGATGGATGAG+TGG + Chr1:15844621-15844640 None:intergenic 35.0%
!! ATTGGGTTCTACTTTTGCAA+TGG + Chr1:15846682-15846701 None:intergenic 35.0%
!! CACCTTTTCAAGGTGAATAA+TGG + Chr1:15842519-15842538 None:intergenic 35.0%
!! CCTTTTCAAGGTGAATAATG+GGG + Chr1:15842517-15842536 None:intergenic 35.0%
!! CTTTTCAAGGTGAATAATGG+GGG + Chr1:15842516-15842535 None:intergenic 35.0%
!! GATTCCTAGACTTTGAAATG+TGG + Chr1:15845569-15845588 None:intergenic 35.0%
!! GCTGTTTTCATAAGCTATTC+TGG - Chr1:15842929-15842948 MsG0180001091.01.T01:intron 35.0%
!!! AGATTTTTTGAGGCCAAATG+AGG - Chr1:15845044-15845063 MsG0180001091.01.T01:intron 35.0%
AACTACGATGAACGTCTTGT+TGG - Chr1:15842036-15842055 MsG0180001091.01.T01:three_prime_UTR 40.0%
ACACAAATTTCTCCATCAGC+AGG + Chr1:15842243-15842262 None:intergenic 40.0%
ACACCCCACTTATTTATTGC+AGG - Chr1:15842471-15842490 MsG0180001091.01.T01:intron 40.0%
ACAGTTCTACAGGAAACTCA+GGG + Chr1:15842210-15842229 None:intergenic 40.0%
ACGAAATGATGCACCTCATT+TGG + Chr1:15845060-15845079 None:intergenic 40.0%
ACGAGTTGTCCGATATCAAA+TGG - Chr1:15843321-15843340 MsG0180001091.01.T01:CDS 40.0%
ACTTATTTATTGCAGGGCCT+GGG - Chr1:15842478-15842497 MsG0180001091.01.T01:intron 40.0%
AGGCAAATAGTTCAAGCTGA+AGG - Chr1:15846267-15846286 MsG0180001091.01.T01:intron 40.0%
AGGCCCTGCAATAAATAAGT+GGG + Chr1:15842478-15842497 None:intergenic 40.0%
AGTCACACATGTGCTTATGT+CGG - Chr1:15843021-15843040 MsG0180001091.01.T01:intron 40.0%
CAACCACAAACATGGCAATA+TGG - Chr1:15841974-15841993 MsG0180001091.01.T01:intron 40.0%
CACCCCACTTATTTATTGCA+GGG - Chr1:15842472-15842491 MsG0180001091.01.T01:intron 40.0%
CATATTGCCATGTTTGTGGT+TGG + Chr1:15841976-15841995 None:intergenic 40.0%
CATCAATCAGGTCACTATCT+CGG + Chr1:15845773-15845792 None:intergenic 40.0%
CCAAGAAAGTTCAAACTTGG+GGG - Chr1:15844106-15844125 MsG0180001091.01.T01:intron 40.0%
CCCAAGAAAGTTCAAACTTG+GGG - Chr1:15844105-15844124 MsG0180001091.01.T01:intron 40.0%
CCCCAAGTTTGAACTTTCTT+GGG + Chr1:15844108-15844127 None:intergenic 40.0%
CCCCATTATTCACCTTGAAA+AGG - Chr1:15842514-15842533 MsG0180001091.01.T01:intron 40.0%
CGATCTCAGCCATTTGATAT+CGG + Chr1:15843333-15843352 None:intergenic 40.0%
CTATCTCGGACATTACAACA+AGG + Chr1:15845759-15845778 None:intergenic 40.0%
GAAAAGGCTCTCCTTCAAAT+AGG - Chr1:15846327-15846346 MsG0180001091.01.T01:intron 40.0%
GACACCTTAAACTAGGTCAA+GGG - Chr1:15843948-15843967 MsG0180001091.01.T01:intron 40.0%
GATGCCACATTTCAAAGTCT+AGG - Chr1:15845562-15845581 MsG0180001091.01.T01:intron 40.0%
GTAATTGCTGCACAGTATCT+GGG - Chr1:15844955-15844974 MsG0180001091.01.T01:intron 40.0%
TACATTGACCTTCTTGTCTG+GGG + Chr1:15845274-15845293 None:intergenic 40.0%
TACCCATATTGCCATGTTTG+TGG + Chr1:15841980-15841999 None:intergenic 40.0%
TATGGTGAAACCTGATTGGA+GGG - Chr1:15843994-15844013 MsG0180001091.01.T01:intron 40.0%
TCAGTCGAATCTCTATCACA+TGG + Chr1:15844240-15844259 None:intergenic 40.0%
TCGTGAACTTCTACTTCTGA+GGG + Chr1:15845732-15845751 None:intergenic 40.0%
TCTCCAAAAGCAGAAATCCA+CGG + Chr1:15845920-15845939 None:intergenic 40.0%
TCTTGGATACACATACTAGG+AGG + Chr1:15843110-15843129 None:intergenic 40.0%
TGAACCCTTGACCTAGTTTA+AGG + Chr1:15843955-15843974 None:intergenic 40.0%
TGAATGCCCTGTGGAAATTT+AGG - Chr1:15846191-15846210 MsG0180001091.01.T01:intron 40.0%
TGTAATTGCTGCACAGTATC+TGG - Chr1:15844954-15844973 MsG0180001091.01.T01:intron 40.0%
TGTCTTGACTGTAGGGAATA+CGG - Chr1:15843367-15843386 MsG0180001091.01.T01:intron 40.0%
TTCCAATGTGACAGTTCTAC+AGG + Chr1:15842220-15842239 None:intergenic 40.0%
TTCCTGTAGAACTGTCACAT+TGG - Chr1:15842215-15842234 MsG0180001091.01.T01:intron 40.0%
TTTCTTGGGTAACTATGTGC+AGG + Chr1:15844094-15844113 None:intergenic 40.0%
! AAAGGTGTGTGATCTCGTTA+TGG - Chr1:15846062-15846081 MsG0180001091.01.T01:intron 40.0%
! AATAAATAAGTGGGGTGTCC+GGG + Chr1:15842469-15842488 None:intergenic 40.0%
! CAATAAATAAGTGGGGTGTC+CGG + Chr1:15842470-15842489 None:intergenic 40.0%
! CGTGACTTTTGCTTAAGTAG+AGG + Chr1:15844840-15844859 None:intergenic 40.0%
! CTGTTTTGCAAGGAGATAGT+GGG - Chr1:15843785-15843804 MsG0180001091.01.T01:intron 40.0%
! GATTCGACTGAGTTTTACGT+TGG - Chr1:15844249-15844268 MsG0180001091.01.T01:intron 40.0%
! GGACAAGCATTGTTATATGC+AGG - Chr1:15842429-15842448 MsG0180001091.01.T01:intron 40.0%
! GTTTTCACTGTAAGTGTCAC+AGG - Chr1:15845018-15845037 MsG0180001091.01.T01:intron 40.0%
! TCTGTTTTGCAAGGAGATAG+TGG - Chr1:15843784-15843803 MsG0180001091.01.T01:intron 40.0%
! TGTTTTGCAAGGAGATAGTG+GGG - Chr1:15843786-15843805 MsG0180001091.01.T01:intron 40.0%
!! CCAAGTTTTGGTATGGAACT+CGG - Chr1:15843926-15843945 MsG0180001091.01.T01:intron 40.0%
!! GGTTCTACTTTTGCAATGGT+TGG + Chr1:15846678-15846697 None:intergenic 40.0%
!! TTGCTGATTAAGGCCTTGTT+TGG - Chr1:15842307-15842326 MsG0180001091.01.T01:CDS 40.0%
!!! GAGATTTTTTTGTCCTTGGC+AGG - Chr1:15842408-15842427 MsG0180001091.01.T01:intron 40.0%
!!! TCACAGGCCAAGATTTTTTG+AGG - Chr1:15845034-15845053 MsG0180001091.01.T01:intron 40.0%
AACTGAGACGATGACCAAAC+CGG + Chr1:15845881-15845900 None:intergenic 45.0%
AACTGTGTTTGAATGCCCTG+TGG - Chr1:15846182-15846201 MsG0180001091.01.T01:intron 45.0%
ATACTCTCTGTTAGGTCCTG+TGG + Chr1:15846295-15846314 None:intergenic 45.0%
ATGGTGAAACCTGATTGGAG+GGG - Chr1:15843995-15844014 MsG0180001091.01.T01:intron 45.0%
CACTTATTTATTGCAGGGCC+TGG - Chr1:15842477-15842496 MsG0180001091.01.T01:intron 45.0%
CAGGCCCTGCAATAAATAAG+TGG + Chr1:15842479-15842498 None:intergenic 45.0%
CAGTTCTACAGGAAACTCAG+GGG + Chr1:15842209-15842228 None:intergenic 45.0%
CATTGTTATATGCAGGGCCA+GGG - Chr1:15842436-15842455 MsG0180001091.01.T01:intron 45.0%
CCCCCAAGTTTGAACTTTCT+TGG + Chr1:15844109-15844128 None:intergenic 45.0%
CCGAGTTCCATACCAAAACT+TGG + Chr1:15843929-15843948 None:intergenic 45.0%
CGAGATAGTGACCTGATTGA+TGG - Chr1:15845771-15845790 MsG0180001091.01.T01:intron 45.0%
CGTCTGTTGAAGAGATTGCA+AGG - Chr1:15845310-15845329 MsG0180001091.01.T01:CDS 45.0%
CTCGGACATTACAACAAGGA+GGG + Chr1:15845755-15845774 None:intergenic 45.0%
CTTTCACTTACACCAATGCC+CGG + Chr1:15845167-15845186 None:intergenic 45.0%
GAACTCGGACACCTTAAACT+AGG - Chr1:15843941-15843960 MsG0180001091.01.T01:intron 45.0%
GACAGTTCTACAGGAAACTC+AGG + Chr1:15842211-15842230 None:intergenic 45.0%
GGACACCTTAAACTAGGTCA+AGG - Chr1:15843947-15843966 MsG0180001091.01.T01:intron 45.0%
GGCCCTGCAATAAATAAGTG+GGG + Chr1:15842477-15842496 None:intergenic 45.0%
GGCTCTCCTTCAAATAGGTA+AGG - Chr1:15846332-15846351 MsG0180001091.01.T01:intron 45.0%
GGTGTATGGTGAAACCTGAT+TGG - Chr1:15843990-15844009 MsG0180001091.01.T01:intron 45.0%
GTATGGTGAAACCTGATTGG+AGG - Chr1:15843993-15844012 MsG0180001091.01.T01:intron 45.0%
GTCGTGAACTTCTACTTCTG+AGG + Chr1:15845733-15845752 None:intergenic 45.0%
GTCTCAGTTGTGAGGACAAA+GGG - Chr1:15845892-15845911 MsG0180001091.01.T01:intron 45.0%
GTGATCTCGTTATGGACACA+CGG - Chr1:15846070-15846089 MsG0180001091.01.T01:intron 45.0%
TAACAATGCTTGTCCTGCCA+AGG + Chr1:15842424-15842443 None:intergenic 45.0%
TACTCTCTGTTAGGTCCTGT+GGG + Chr1:15846294-15846313 None:intergenic 45.0%
TAGTCATTGCTAAACTGCGG+TGG - Chr1:15844058-15844077 MsG0180001091.01.T01:intron 45.0%
TATAGCATCCCCAGACAAGA+AGG - Chr1:15845263-15845282 MsG0180001091.01.T01:CDS 45.0%
TATCGACGTGTCTTCTACCA+AGG - Chr1:15842072-15842091 MsG0180001091.01.T01:three_prime_UTR 45.0%
TCTCAGTTGTGAGGACAAAG+GGG - Chr1:15845893-15845912 MsG0180001091.01.T01:intron 45.0%
TCTCGGACATTACAACAAGG+AGG + Chr1:15845756-15845775 None:intergenic 45.0%
TGAACCATGGCAAGTTCTAC+TGG + Chr1:15846154-15846173 None:intergenic 45.0%
TGGGTAACTATGTGCAGGAA+AGG + Chr1:15844089-15844108 None:intergenic 45.0%
TTCATAAGCCTCCTAAGGCA+AGG + Chr1:15845440-15845459 None:intergenic 45.0%
! ATAAATAAGTGGGGTGTCCG+GGG + Chr1:15842468-15842487 None:intergenic 45.0%
!! TTGTCAAACTAGCACCGGTT+TGG - Chr1:15845864-15845883 MsG0180001091.01.T01:intron 45.0%
!!! GAAGGAGAGCCTTTTCAAGT+AGG + Chr1:15846323-15846342 None:intergenic 45.0%
!!! GATTTTCAAGTGGCGATCCA+AGG + Chr1:15845680-15845699 None:intergenic 45.0%
!!! GTTTTGGAGATCCTTGCCTT+AGG - Chr1:15845426-15845445 MsG0180001091.01.T01:intron 45.0%
ACCATGGCAAGTTCTACTGG+CGG + Chr1:15846151-15846170 None:intergenic 50.0%
ACCTCTAGTGGTCGCATACT+AGG + Chr1:15844285-15844304 None:intergenic 50.0%
AGGGCGACATCAATCACCAT+TGG + Chr1:15845713-15845732 None:intergenic 50.0%
AGTATGCGACCACTAGAGGT+AGG - Chr1:15844285-15844304 MsG0180001091.01.T01:intron 50.0%
CGTCTCAGTTGTGAGGACAA+AGG - Chr1:15845891-15845910 MsG0180001091.01.T01:intron 50.0%
GCAATCTCTTCAACAGACGC+AGG + Chr1:15845309-15845328 None:intergenic 50.0%
GCATTGTTATATGCAGGGCC+AGG - Chr1:15842435-15842454 MsG0180001091.01.T01:intron 50.0%
GCTTGTCTTGGCATCCTAAG+AGG + Chr1:15846422-15846441 None:intergenic 50.0%
GGAGAAGCAATACGATCGGA+AGG - Chr1:15844984-15845003 MsG0180001091.01.T01:intron 50.0%
GTATGCGACCACTAGAGGTA+GGG - Chr1:15844286-15844305 MsG0180001091.01.T01:intron 50.0%
GTCACATTGGAACCTGCTGA+TGG - Chr1:15842228-15842247 MsG0180001091.01.T01:intron 50.0%
TATGCGACCACTAGAGGTAG+GGG - Chr1:15844287-15844306 MsG0180001091.01.T01:intron 50.0%
TGCGGGAGAAGCAATACGAT+CGG - Chr1:15844980-15844999 MsG0180001091.01.T01:intron 50.0%
TGGTCATCGTCTCAGTTGTG+AGG - Chr1:15845884-15845903 MsG0180001091.01.T01:intron 50.0%
TGGTTCACGAGCAAGTTCCA+CGG - Chr1:15845646-15845665 MsG0180001091.01.T01:intron 50.0%
TTGGAGATCCTTGCCTTAGG+AGG - Chr1:15845429-15845448 MsG0180001091.01.T01:intron 50.0%
! AAGGTGAATAATGGGGGTCC+GGG + Chr1:15842510-15842529 None:intergenic 50.0%
! CAAGGTGAATAATGGGGGTC+CGG + Chr1:15842511-15842530 None:intergenic 50.0%
! CTACAACGCCAGCTATTTCC+GGG - Chr1:15845146-15845165 MsG0180001091.01.T01:intron 50.0%
! GCTACAACGCCAGCTATTTC+CGG - Chr1:15845145-15845164 MsG0180001091.01.T01:intron 50.0%
! GGACCGTGGATTTCTGCTTT+TGG - Chr1:15845914-15845933 MsG0180001091.01.T01:intron 50.0%
ATGCGACCACTAGAGGTAGG+GGG - Chr1:15844288-15844307 MsG0180001091.01.T01:intron 55.0%
CACCAATGCCCGGAAATAGC+TGG + Chr1:15845157-15845176 None:intergenic 55.0%
CTGCACAGTATCTGGGAGTG+CGG - Chr1:15844962-15844981 MsG0180001091.01.T01:intron 55.0%
GAGAGTTCTCCCCTCCAATC+AGG + Chr1:15844007-15844026 None:intergenic 55.0%
GATCCAAGGTGATACTGCCG+TGG + Chr1:15845666-15845685 None:intergenic 55.0%
GCCTAGTATGCGACCACTAG+AGG - Chr1:15844281-15844300 MsG0180001091.01.T01:intron 55.0%
GTAGGGAATACGGACCGTGT+AGG - Chr1:15843377-15843396 MsG0180001091.01.T01:intron 55.0%
GTTCAAGCTGAAGGTCCCAC+AGG - Chr1:15846276-15846295 MsG0180001091.01.T01:intron 55.0%
GTTCCACGGCAGTATCACCT+TGG - Chr1:15845660-15845679 MsG0180001091.01.T01:intron 55.0%
TCCGCCAGTAGAACTTGCCA+TGG - Chr1:15846147-15846166 MsG0180001091.01.T01:intron 55.0%
TGGCAAGTTCTACTGGCGGA+TGG + Chr1:15846147-15846166 None:intergenic 55.0%
! TGCACAGTATCTGGGAGTGC+GGG - Chr1:15844963-15844982 MsG0180001091.01.T01:intron 55.0%
AGGTCTCCCCCTACCTCTAG+TGG + Chr1:15844297-15844316 None:intergenic 60.0%
TGTGAGGACAAAGGGGACCG+TGG - Chr1:15845900-15845919 MsG0180001091.01.T01:intron 60.0%
! CGCCAGCTATTTCCGGGCAT+TGG - Chr1:15845152-15845171 MsG0180001091.01.T01:intron 60.0%
CAGGGCCAGGGTTCGAACCC+CGG - Chr1:15842448-15842467 MsG0180001091.01.T01:intron 70.0%
GCAGGGCCTGGGTTCGAACC+CGG - Chr1:15842489-15842508 MsG0180001091.01.T01:intron 70.0%
GGTGTCCGGGGTTCGAACCC+TGG + Chr1:15842456-15842475 None:intergenic 70.0%
GGGGGTCCGGGTTCGAACCC+AGG + Chr1:15842498-15842517 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 15841865 15846774 15841865 ID=MsG0180001091.01;Name=MsG0180001091.01
Chr1 mRNA 15841865 15846774 15841865 ID=MsG0180001091.01.T01;Parent=MsG0180001091.01;Name=MsG0180001091.01.T01;_AED=0.46;_eAED=0.56;_QI=120|0.55|0.7|1|0.55|0.6|10|224|256
Chr1 exon 15841865 15841932 15841865 ID=MsG0180001091.01.T01:exon:4941;Parent=MsG0180001091.01.T01
Chr1 exon 15841989 15842212 15841989 ID=MsG0180001091.01.T01:exon:4940;Parent=MsG0180001091.01.T01
Chr1 five_prime_UTR 15846655 15846774 15846655 ID=MsG0180001091.01.T01:five_prime_utr;Parent=MsG0180001091.01.T01
Chr1 CDS 15846546 15846654 15846546 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15846379 15846454 15846379 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15845245 15845371 15845245 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15844782 15844835 15844782 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15843613 15843753 15843613 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15843460 15843503 15843460 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15843308 15843379 15843308 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15842291 15842370 15842291 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 CDS 15842145 15842212 15842145 ID=MsG0180001091.01.T01:cds;Parent=MsG0180001091.01.T01
Chr1 three_prime_UTR 15841989 15842144 15841989 ID=MsG0180001091.01.T01:three_prime_utr;Parent=MsG0180001091.01.T01
Chr1 three_prime_UTR 15841865 15841932 15841865 ID=MsG0180001091.01.T01:three_prime_utr;Parent=MsG0180001091.01.T01
Chr1 mRNA 15841910 15846774 15841910 ID=MsG0180001091.01.T02;Parent=MsG0180001091.01;Name=MsG0180001091.01.T02;_AED=0.46;_eAED=0.56;_QI=120|0.5|0.66|1|0.62|0.77|9|235|256
Chr1 exon 15841910 15842212 15841910 ID=MsG0180001091.01.T02:exon:4942;Parent=MsG0180001091.01.T02
Chr1 five_prime_UTR 15846655 15846774 15846655 ID=MsG0180001091.01.T02:five_prime_utr;Parent=MsG0180001091.01.T02
Chr1 CDS 15846546 15846654 15846546 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15846379 15846454 15846379 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15845245 15845371 15845245 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15844782 15844835 15844782 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15843613 15843753 15843613 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15843460 15843503 15843460 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15843308 15843379 15843308 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15842291 15842370 15842291 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 CDS 15842145 15842212 15842145 ID=MsG0180001091.01.T02:cds;Parent=MsG0180001091.01.T02
Chr1 three_prime_UTR 15841910 15842144 15841910 ID=MsG0180001091.01.T02:three_prime_utr;Parent=MsG0180001091.01.T02
Gene Sequence

>MsG0180001091.01.T02

ATGGCAATATGGGTATTTGGTTACGGTTCTTTGATTTCAAAAGCTGGTTTTAACTACGATGAACGTCTTGTTGGTTTCATCAAAGATTATCGACGTGTCTTCTACCAAGGTTCTACTGATCATAGAGGAACCCCTGAGTTTCCTGTAGAACTGTCACATTGGAACCTGCTGATGGAGAAATTTGTAATGCGAGAAATGGATTTTTCTGCAGTCACATATTACTTCAAAAAGTCGGAATACGAGTTGTCCGATATCAAATGGCTGAGATCGCGTGACTACTTGATTGTCTTGACTGTAGGGAATACGGACCGTTGGGGAGCTGCTTACAAGATTACAAAGAAAGAAGATCAAGAAATTGCATTGACATTATGTTGTCTATCTTTCCCTTTCTTCATCAAACGTCACTATGTCGGTGCTTTTCATTGTTGTTTGTGTGTAATTGCTGCACAGTATCTGGGAGTGCGGGAGAAGCAATACGATCGGAAGGAATATGTTGATGTTTTCACTGAGCTTACTGCTACAACGCCAGCTATTTCCGGGCATTGGTGTAAATATATAGCATCCCCAGACAAGAAGGTCAATGTAAATTATCTAGGTCCTGCGTCTGTTGAAGAGATTGCAAGGCAAATAGTTCAAGCTGAAGGTCCCACAGGACCTAACAGAGAGTATCTTTTCCTACTTGAAAAGGCTCTCCTTCAAATAGGATGCCAAGACAAGCATGTTATTGATCTTGCAAATGAAGTCAGGCGTATTCTTTCAGAAGAACAATGA

>MsG0180001091.01.T01

ATGGCAATATGGGTATTTGGTTACGGTTCTTTGATTTCAAAAGCTGGTTTTAACTACGATGAACGTCTTGTTGGTTTCATCAAAGATTATCGACGTGTCTTCTACCAAGGTTCTACTGATCATAGAGGAACCCCTGAGTTTCCTGTAGAACTGTCACATTGGAACCTGCTGATGGAGAAATTTGTAATGCGAGAAATGGATTTTTCTGCAGTCACATATTACTTCAAAAAGTCGGAATACGAGTTGTCCGATATCAAATGGCTGAGATCGCGTGACTACTTGATTGTCTTGACTGTAGGGAATACGGACCGTTGGGGAGCTGCTTACAAGATTACAAAGAAAGAAGATCAAGAAATTGCATTGACATTATGTTGTCTATCTTTCCCTTTCTTCATCAAACGTCACTATGTCGGTGCTTTTCATTGTTGTTTGTGTGTAATTGCTGCACAGTATCTGGGAGTGCGGGAGAAGCAATACGATCGGAAGGAATATGTTGATGTTTTCACTGAGCTTACTGCTACAACGCCAGCTATTTCCGGGCATTGGTGTAAATATATAGCATCCCCAGACAAGAAGGTCAATGTAAATTATCTAGGTCCTGCGTCTGTTGAAGAGATTGCAAGGCAAATAGTTCAAGCTGAAGGTCCCACAGGACCTAACAGAGAGTATCTTTTCCTACTTGAAAAGGCTCTCCTTCAAATAGGATGCCAAGACAAGCATGTTATTGATCTTGCAAATGAAGTCAGGCGTATTCTTTCAGAAGAACAATGA

Protein sequence

>MsG0180001091.01.T02

MAIWVFGYGSLISKAGFNYDERLVGFIKDYRRVFYQGSTDHRGTPEFPVELSHWNLLMEKFVMREMDFSAVTYYFKKSEYELSDIKWLRSRDYLIVLTVGNTDRWGAAYKITKKEDQEIALTLCCLSFPFFIKRHYVGAFHCCLCVIAAQYLGVREKQYDRKEYVDVFTELTATTPAISGHWCKYIASPDKKVNVNYLGPASVEEIARQIVQAEGPTGPNREYLFLLEKALLQIGCQDKHVIDLANEVRRILSEEQ*

>MsG0180001091.01.T01

MAIWVFGYGSLISKAGFNYDERLVGFIKDYRRVFYQGSTDHRGTPEFPVELSHWNLLMEKFVMREMDFSAVTYYFKKSEYELSDIKWLRSRDYLIVLTVGNTDRWGAAYKITKKEDQEIALTLCCLSFPFFIKRHYVGAFHCCLCVIAAQYLGVREKQYDRKEYVDVFTELTATTPAISGHWCKYIASPDKKVNVNYLGPASVEEIARQIVQAEGPTGPNREYLFLLEKALLQIGCQDKHVIDLANEVRRILSEEQ*