AlfalfaGEDB | MsG0080049002.01

M. sativa cultivar ZhongmuNo.1 / MsG0080049002.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049002.01.T01	XP_013460584.1	96.333	300	11	0	1	300	1	300	0	601

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049002.01.T01	Q94AX2	70.098	204	61	0	97	300	74	277	1.16E-101	301

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049002.01.T01	A0A072UZP8	96.333	300	11	0	1	300	1	300	0.0	601

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047884.01	MsG0080049002.01	0.800000	1.769239e-48	8.146892e-46
MsG0080048464.01	MsG0080049002.01	0.805036	1.620355e-49	8.484307e-47
MsG0080048660.01	MsG0080049002.01	0.823488	1.348242e-53	1.162548e-50
MsG0080048727.01	MsG0080049002.01	0.851550	8.251892e-61	1.676247e-57
MsG0080048748.01	MsG0080049002.01	0.805005	1.645111e-49	8.607033e-47
MsG0080048773.01	MsG0080049002.01	0.837479	5.073164e-57	6.598634e-54
MsG0080048820.01	MsG0080049002.01	0.830752	2.460837e-55	2.616703e-52
MsG0080048845.01	MsG0080049002.01	0.818318	2.086420e-52	1.556604e-49
MsG0080048849.01	MsG0080049002.01	0.847789	9.256083e-60	1.663624e-56
MsG0080048938.01	MsG0080049002.01	0.807029	6.171931e-50	3.401318e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049002.01.T01	MTR_3g065930	96.333	300	11	0	1	300	1	300	0.0	601
MsG0080049002.01.T01	MTR_3g065930	96.013	301	11	1	1	300	1	301	0.0	597
MsG0080049002.01.T01	MTR_3g065930	97.934	242	5	0	59	300	1	242	2.74e-179	494
MsG0080049002.01.T01	MTR_5g038210	29.048	210	128	5	96	299	327	521	5.52e-13	69.3
MsG0080049002.01.T01	MTR_1g063080	31.336	217	107	10	103	300	428	621	1.27e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080049002.01.T01	AT5G39790	68.599	207	62	1	97	300	74	280	1.18e-100	296
MsG0080049002.01.T01	AT5G39790	69.608	204	58	1	97	300	74	273	5.43e-100	295
MsG0080049002.01.T01	AT5G39790	65.686	102	31	1	97	198	74	171	1.68e-36	130
MsG0080049002.01.T01	AT1G27070	40.244	82	46	1	218	299	453	531	4.27e-13	69.7

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Find 10 sgRNAs with CRISPR-Local

Find 714 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCACAAATCTTCCTTATA+AGG	0.163315	contig600end:+19334	MsG0080049002.01.T01:exon
AATTCTTAGTAGATGGTGAA+TGG	0.533430	contig600end:+19192	MsG0080049002.01.T01:exon
ACAAATCTTCCTTATAAGGG+TGG	0.624360	contig600end:+19338	MsG0080049002.01.T01:exon
AGTTACCTGTTACTGGTGAA+GGG	0.611786	contig600end:+19228	MsG0080049002.01.T01:exon
ATCACAAATCTTCCTTATAA+GGG	0.317058	contig600end:+19335	MsG0080049002.01.T01:exon
GAAATCAAATTCTTAGTAGA+TGG	0.435547	contig600end:+19185	MsG0080049002.01.T01:exon
GAGTTACCTGTTACTGGTGA+AGG	0.488033	contig600end:+19227	MsG0080049002.01.T01:exon
GTTAACCCTTCACCAGTAAC+AGG	0.359890	contig600end:-19233	MsG0080049002.01.T01:intergenic
TAACAGGTAACTCTGTTGAT+AGG	0.492879	contig600end:-19217	MsG0080049002.01.T01:intergenic
TCAACAGAGTTACCTGTTAC+TGG	0.371155	contig600end:+19221	MsG0080049002.01.T01:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGATAAATGGCATAGA+GGG	+	contig600end:14276-14295	MsG0080049002.01.T01:intron	30.0%
AAACAATTCCCATCTTACAA+AGG	-	contig600end:15497-15516	MsG0080049002.01.T01:intergenic	30.0%
AAAGCATAACTCAGTTAGTA+GGG	+	contig600end:13450-13469	MsG0080049002.01.T01:intron	30.0%
AAATAGCCTCAAAATTGAGA+AGG	-	contig600end:17618-17637	MsG0080049002.01.T01:intergenic	30.0%
AACGAAAACGATCCAAATAA+AGG	+	contig600end:9740-9759	MsG0080049002.01.T01:intron	30.0%
AACTAGATTGTTAGTGTTTC+TGG	-	contig600end:10220-10239	MsG0080049002.01.T01:intergenic	30.0%
AAGTAGAGTAAGAAGAAAAG+TGG	-	contig600end:15437-15456	MsG0080049002.01.T01:intergenic	30.0%
AAGTATGATCCCGATAAAAT+GGG	+	contig600end:16808-16827	MsG0080049002.01.T01:intron	30.0%
AAGTTGCATACACTCAAAAA+AGG	-	contig600end:16416-16435	MsG0080049002.01.T01:intergenic	30.0%
AATATACAGGTTCATACACA+AGG	+	contig600end:19036-19055	MsG0080049002.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig600end	gene	9205	19399	9205	ID=MsG0080049002.01;
contig600end	mRNA	9205	19399	9205	ID=MsG0080049002.01.T01;Parent=MsG0080049002.01
contig600end	exon	9205	9482	9205	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	exon	14842	14882	14842	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	CDS	14860	14882	14860	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	CDS	14989	15298	14989	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	exon	14989	15298	14989	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	CDS	16485	16574	16485	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	exon	16485	16574	16485	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	CDS	17529	17597	17529	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	exon	17529	17597	17529	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	CDS	17726	17831	17726	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	exon	17726	17831	17726	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	CDS	18007	18095	18007	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	exon	18007	18095	18007	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	CDS	18978	19090	18978	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	exon	18978	19090	18978	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01
contig600end	CDS	19181	19283	19181	ID=MsG0080049002.01.T01.cds;Parent=MsG0080049002.01.T01
contig600end	exon	19181	19399	19181	ID=MsG0080049002.01.T01.exon;Parent=MsG0080049002.01.T01

Gene Sequence

>MsG0080049002.01.T01

ATGATGGAAATAAGTATTGCAAGGTGTCATCTAGAAGCTCAGGGGATATTCTTTTCTACCATTTTGAGAACAATAGGAAGGGAAAATTCTCAGAAACTTCCATGTAATGTCGCGTCCCTGAATTCTAGACGGGACCTCCAAAGATTAGCCTCTTCCTATCAAACTCTTACTGCCGTGTATCGAAGAAGGCCGTTTTTCTGTAGAACGCAATCTATGCAAACTGGTTTAGAAGAATATGCATCATTACAATCCAGAGATAATCCTAACAACGATATTGATCCATCTATAGACTCAGAAGACGAGATCTTGTCACAACCACATACCAGTGAACAGATAAAGGCACTGCTTGCTGATACTGAAAGAGCAAAACTCACTAAGAAGCTTAGTGAAGCCAACCAGCAAAATCGGTTCCTCAAAAGACAGTTGTATATAAAGGAAGATGCGTTGGTAAAGTTTAAAAGTGAACTTGCTGTCTTAGAGCTCGAAGTTCAGGCTTTGGCCAGACTAGCAGAAGAAATAGCTAAATCTGGTATTCCAGAAGGTTCAAGGAAGATCAACGGAAAGTACATTCATACTCACCTTGTTACTAGATTAAAAGCTGTACACAAACAATTGAATGAGCAAATAAAGGGTGTTGATGCGGCACAATCAAAGGAGGTAGCCGTATTTTGGGTCGGCATGGCTGAGAGTGTGCAAGTTATGGGCAGCTTTGATGGTTGGAGTCAAGGAGAGCATCTTTCACCAGAATATACAGGTTCATACACAAGGTTCTCAACAACATTGATGCTTAGGCCAGGAAGGTATGAAATCAAATTCTTAGTAGATGGTGAATGGCACCTATCAACAGAGTTACCTGTTACTGGTGAAGGGTTAACGAAAAATAATTTGTTAATTGTTGAGTGA

Protein sequence

>MsG0080049002.01.T01

MMEISIARCHLEAQGIFFSTILRTIGRENSQKLPCNVASLNSRRDLQRLASSYQTLTAVYRRRPFFCRTQSMQTGLEEYASLQSRDNPNNDIDPSIDSEDEILSQPHTSEQIKALLADTERAKLTKKLSEANQQNRFLKRQLYIKEDALVKFKSELAVLELEVQALARLAEEIAKSGIPEGSRKINGKYIHTHLVTRLKAVHKQLNEQIKGVDAAQSKEVAVFWVGMAESVQVMGSFDGWSQGEHLSPEYTGSYTRFSTTLMLRPGRYEIKFLVDGEWHLSTELPVTGEGLTKNNLLIVE*