AlfalfaGEDB | MsG0180005529.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005529.01

KEGG: -
GO: GO:0004252 GO:0006508
PFAM: PF00082

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005529.01.T01	XP_003592386.2	86.503	163	15	2	1	159	564	723	2.87E-87	281

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005529.01.T01	Q9FLI4	65.244	164	49	3	1	159	561	721	2.04E-64	213

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005529.01.T01	G7ID47	86.503	163	15	2	1	159	564	723	1.37e-87	281

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000115.01	MsG0180005529.01	0.802055	6.727456e-49	3.263448e-46
MsG0180004375.01	MsG0180005529.01	0.814223	1.719132e-51	1.146763e-48
MsG0180005529.01	MsG0180005530.01	0.831238	1.869504e-55	2.016595e-52
MsG0180005529.01	MsG0780038987.01	0.814340	1.619531e-51	1.083827e-48
MsG0180005529.01	MsG0780041735.01	0.822119	2.809547e-53	2.330161e-50
MsG0180005529.01	MsG0880042544.01	0.803867	2.840109e-49	1.443124e-46
MsG0180005529.01	MsG0880042813.01	0.800073	1.710369e-48	7.890471e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005529.01.T01	MTR_1g102350	86.503	163	15	2	1	159	564	723	3.48e-91	281
MsG0180005529.01.T01	MTR_2g042130	50.649	154	72	2	1	153	559	709	3.37e-47	163
MsG0180005529.01.T01	MTR_4g125180	58.400	125	52	0	1	125	537	661	1.58e-46	161
MsG0180005529.01.T01	MTR_8g021130	50.000	136	64	2	1	132	559	694	4.41e-39	140
MsG0180005529.01.T01	MTR_4g095360	42.208	154	89	0	1	154	541	694	4.90e-38	137
MsG0180005529.01.T01	MTR_8g022870	50.000	126	62	1	1	125	556	681	1.25e-36	133
MsG0180005529.01.T01	MTR_7g081500	50.407	123	60	1	1	123	574	695	7.06e-36	131
MsG0180005529.01.T01	MTR_7g081420	50.407	123	60	1	1	123	576	697	2.84e-35	129
MsG0180005529.01.T01	MTR_1g078110	40.244	164	90	3	1	160	540	699	3.15e-35	129
MsG0180005529.01.T01	MTR_8g072440	48.780	123	62	1	1	123	503	624	4.93e-35	129
MsG0180005529.01.T01	MTR_8g072440	48.780	123	62	1	1	123	545	666	5.83e-35	129
MsG0180005529.01.T01	MTR_7g081750	48.780	123	62	1	1	123	589	710	6.54e-35	129
MsG0180005529.01.T01	MTR_4g073540	47.619	126	65	1	1	126	549	673	8.26e-35	128
MsG0180005529.01.T01	MTR_7g081380	50.000	124	60	2	1	123	597	719	8.88e-35	128
MsG0180005529.01.T01	MTR_7g075900	46.457	127	66	1	1	125	556	682	1.45e-34	127
MsG0180005529.01.T01	MTR_1g079120	41.875	160	88	3	1	158	544	700	2.17e-34	127
MsG0180005529.01.T01	MTR_5g025010	50.407	123	60	1	1	123	542	663	2.27e-34	127
MsG0180005529.01.T01	MTR_5g025010	50.407	123	60	1	1	123	510	631	2.34e-34	127
MsG0180005529.01.T01	MTR_3g082200	48.780	123	60	3	1	123	425	544	3.21e-34	126
MsG0180005529.01.T01	MTR_4g103400	47.794	136	67	4	1	135	566	698	3.24e-34	127
MsG0180005529.01.T01	MTR_3g082200	48.780	123	60	3	1	123	440	559	3.31e-34	126
MsG0180005529.01.T01	MTR_3g082200	48.780	123	60	3	1	123	563	682	4.56e-34	126
MsG0180005529.01.T01	MTR_7g098070	43.262	141	76	3	1	141	558	694	5.96e-34	126
MsG0180005529.01.T01	MTR_7g098630	48.592	142	64	5	1	137	542	679	1.35e-33	125
MsG0180005529.01.T01	MTR_5g016120	41.176	153	90	0	1	153	547	699	1.77e-33	124
MsG0180005529.01.T01	MTR_7g079310	40.426	141	80	2	1	140	550	687	1.97e-33	124
MsG0180005529.01.T01	MTR_4g053635	48.780	123	62	1	1	123	464	585	2.22e-33	124
MsG0180005529.01.T01	MTR_4g053630	48.780	123	62	1	1	123	444	565	4.83e-33	123
MsG0180005529.01.T01	MTR_8g024420	44.531	128	67	2	1	127	507	631	5.83e-33	123
MsG0180005529.01.T01	MTR_7g481600	48.780	123	62	1	1	123	575	696	6.58e-33	123
MsG0180005529.01.T01	MTR_8g024390	44.615	130	68	2	1	129	543	669	7.10e-33	123
MsG0180005529.01.T01	MTR_4g053630	48.780	123	62	1	1	123	521	642	7.27e-33	122
MsG0180005529.01.T01	MTR_8g024380	44.444	126	66	2	1	125	544	666	8.03e-33	122
MsG0180005529.01.T01	MTR_7g081580	48.780	123	62	1	1	123	575	696	1.07e-32	122
MsG0180005529.01.T01	MTR_5g085690	51.220	123	57	3	1	123	581	700	1.95e-32	121
MsG0180005529.01.T01	MTR_3g102810	45.600	125	68	0	1	125	535	659	2.22e-32	121
MsG0180005529.01.T01	MTR_7g079300	40.876	137	77	2	1	136	552	685	5.35e-32	120
MsG0180005529.01.T01	MTR_0047s0120	42.484	153	88	0	1	153	543	695	1.25e-31	119
MsG0180005529.01.T01	MTR_2g049200	46.281	121	61	2	1	120	542	659	1.55e-31	119
MsG0180005529.01.T01	MTR_4g134320	45.528	123	63	3	1	123	562	680	2.02e-31	119
MsG0180005529.01.T01	MTR_4g103480	46.324	136	69	4	1	135	577	709	4.67e-31	117
MsG0180005529.01.T01	MTR_4g103495	47.967	123	61	3	1	123	563	682	8.28e-31	117
MsG0180005529.01.T01	MTR_4g103495	47.967	123	61	3	1	123	414	533	9.01e-31	117
MsG0180005529.01.T01	MTR_4g103490	47.059	136	68	4	1	135	574	706	1.06e-30	117
MsG0180005529.01.T01	MTR_7g118080	42.857	140	73	3	1	136	541	677	1.66e-30	116
MsG0180005529.01.T01	MTR_8g024370	41.860	129	71	2	2	129	543	668	1.90e-30	116
MsG0180005529.01.T01	MTR_1g018510	40.458	131	78	0	1	131	502	632	3.80e-30	115
MsG0180005529.01.T01	MTR_5g055920	47.794	136	67	4	1	135	457	589	4.01e-30	115
MsG0180005529.01.T01	MTR_5g011310	45.000	140	70	2	1	137	542	677	4.20e-30	115
MsG0180005529.01.T01	MTR_8g083220	39.416	137	83	0	1	137	565	701	4.76e-30	115
MsG0180005529.01.T01	MTR_4g103450	45.588	136	70	4	1	135	534	666	5.54e-30	114
MsG0180005529.01.T01	MTR_5g011280	42.759	145	76	2	1	142	544	684	6.69e-30	114
MsG0180005529.01.T01	MTR_5g011320	45.714	140	69	2	1	137	534	669	7.06e-30	114
MsG0180005529.01.T01	MTR_3g061110	46.341	123	63	3	1	123	545	664	7.58e-30	114
MsG0180005529.01.T01	MTR_5g011340	45.714	140	69	2	1	137	539	674	8.84e-30	114
MsG0180005529.01.T01	MTR_5g011270	41.667	156	81	3	1	153	540	688	1.94e-29	113
MsG0180005529.01.T01	MTR_4g102400	44.203	138	58	4	1	129	543	670	2.18e-29	113
MsG0180005529.01.T01	MTR_4g103430	47.154	123	62	3	1	123	559	678	2.21e-29	113
MsG0180005529.01.T01	MTR_5g011190	44.203	138	74	3	1	137	542	677	2.80e-29	112
MsG0180005529.01.T01	MTR_5g096750	42.963	135	74	3	1	135	555	686	3.76e-29	112
MsG0180005529.01.T01	MTR_5g011260	41.026	156	82	3	1	153	540	688	1.38e-28	110
MsG0180005529.01.T01	MTR_4g127480	40.690	145	75	3	1	137	601	742	1.79e-28	110
MsG0180005529.01.T01	MTR_5g011370	43.478	138	75	3	1	137	562	697	1.79e-28	110
MsG0180005529.01.T01	MTR_2g037850	40.690	145	75	3	1	137	601	742	5.49e-28	108
MsG0180005529.01.T01	MTR_3g005755	82.540	63	10	1	1	62	246	308	3.82e-27	103
MsG0180005529.01.T01	MTR_8g042670	45.968	124	64	3	1	123	423	544	3.83e-27	106
MsG0180005529.01.T01	MTR_8g042670	45.968	124	64	3	1	123	547	668	6.02e-27	106
MsG0180005529.01.T01	MTR_6g055570	46.774	124	53	5	1	121	525	638	1.31e-26	105
MsG0180005529.01.T01	MTR_8g042710	45.161	124	65	3	1	123	553	674	1.44e-26	105
MsG0180005529.01.T01	MTR_2g070260	42.742	124	62	3	1	123	1	116	1.84e-26	99.8
MsG0180005529.01.T01	MTR_2g044630	44.800	125	58	4	1	123	501	616	2.01e-26	104
MsG0180005529.01.T01	MTR_8g027260	35.000	160	91	5	1	157	446	595	2.59e-26	104
MsG0180005529.01.T01	MTR_1g006990	44.800	125	58	4	1	123	530	645	2.63e-26	104
MsG0180005529.01.T01	MTR_7g034380	41.221	131	67	4	1	129	486	608	1.07e-25	102
MsG0180005529.01.T01	MTR_3g114420	42.520	127	68	3	1	123	550	675	1.36e-25	102
MsG0180005529.01.T01	MTR_8g005710	33.540	161	98	3	1	160	493	645	1.65e-25	102
MsG0180005529.01.T01	MTR_8g089230	35.465	172	93	5	1	157	632	800	1.67e-25	102
MsG0180005529.01.T01	MTR_1g007030	42.748	131	62	5	1	129	528	647	2.34e-25	101
MsG0180005529.01.T01	MTR_1g048110	41.538	130	65	4	1	129	526	645	5.47e-25	100
MsG0180005529.01.T01	MTR_6g075370	37.107	159	90	4	1	158	484	633	1.20e-24	99.4
MsG0180005529.01.T01	MTR_3g010080	42.400	125	61	4	1	123	524	639	1.48e-24	99.4
MsG0180005529.01.T01	MTR_3g464790	40.426	141	78	4	1	136	516	655	1.49e-24	99.4
MsG0180005529.01.T01	MTR_6g055410	43.200	125	56	5	1	121	507	620	2.19e-24	98.6
MsG0180005529.01.T01	MTR_8g006680	42.308	130	62	5	1	128	515	633	2.33e-24	98.6
MsG0180005529.01.T01	MTR_8g005300	42.308	130	62	5	1	128	515	633	2.33e-24	98.6
MsG0180005529.01.T01	MTR_8g005640	42.308	130	62	5	1	128	515	633	2.33e-24	98.6
MsG0180005529.01.T01	MTR_3g104930	39.286	140	79	4	1	135	546	684	2.41e-24	98.6
MsG0180005529.01.T01	MTR_2g042650	44.000	125	59	4	1	123	438	553	3.63e-24	98.2
MsG0180005529.01.T01	MTR_8g033150	42.400	125	60	4	1	123	519	633	9.00e-24	97.1
MsG0180005529.01.T01	MTR_8g033150	42.400	125	60	4	1	123	546	660	9.50e-24	97.1
MsG0180005529.01.T01	MTR_2g018125	43.902	123	62	2	1	123	575	690	1.77e-23	96.3
MsG0180005529.01.T01	MTR_8g079900	36.943	157	80	6	1	148	536	682	2.01e-23	95.9
MsG0180005529.01.T01	MTR_8g079900	36.943	157	80	6	1	148	438	584	2.56e-23	95.5
MsG0180005529.01.T01	MTR_3g452290	43.333	120	53	4	2	117	392	500	4.35e-23	95.1
MsG0180005529.01.T01	MTR_3g451220	43.333	120	53	4	2	117	392	500	4.35e-23	95.1
MsG0180005529.01.T01	MTR_2g018135	43.089	123	63	2	1	123	574	689	3.01e-22	92.8
MsG0180005529.01.T01	MTR_5g011300	47.525	101	46	2	1	98	1	97	6.69e-22	84.7
MsG0180005529.01.T01	MTR_7g075890	37.143	140	72	5	1	136	691	818	9.66e-22	91.3
MsG0180005529.01.T01	MTR_4g132620	35.971	139	82	3	1	135	604	739	2.58e-21	90.1
MsG0180005529.01.T01	MTR_2g046740	34.503	171	93	5	1	155	624	791	3.10e-20	87.0
MsG0180005529.01.T01	MTR_2g042640	40.323	124	48	4	2	123	460	559	4.35e-20	86.3
MsG0180005529.01.T01	MTR_4g126230	39.496	119	63	3	1	119	115	224	4.69e-19	81.3
MsG0180005529.01.T01	MTR_7g104200	38.400	125	65	4	1	123	535	649	2.57e-18	81.3
MsG0180005529.01.T01	MTR_3g114140	37.795	127	71	3	1	123	250	372	1.49e-17	79.0
MsG0180005529.01.T01	MTR_5g044060	50.000	64	31	1	1	63	73	136	1.47e-15	70.5
MsG0180005529.01.T01	MTR_7g081660	38.710	93	56	1	31	123	374	465	5.21e-15	71.6
MsG0180005529.01.T01	MTR_8g027660	31.250	96	62	2	25	119	80	172	3.02e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005529.01.T01	AT5G51750	65.244	164	49	3	1	159	561	721	2.08e-65	213
MsG0180005529.01.T01	AT2G05920	47.468	158	83	0	1	158	537	694	3.85e-45	157
MsG0180005529.01.T01	AT3G14240	47.619	126	65	1	1	125	550	675	4.65e-37	135
MsG0180005529.01.T01	AT4G34980	45.926	135	73	0	1	135	539	673	1.29e-36	133
MsG0180005529.01.T01	AT3G14067	47.407	135	68	2	1	132	547	681	1.76e-36	133
MsG0180005529.01.T01	AT5G67360	50.000	124	60	2	1	123	543	665	4.23e-35	129
MsG0180005529.01.T01	AT2G04160	49.593	123	60	2	1	123	562	682	1.50e-34	127
MsG0180005529.01.T01	AT1G04110	43.262	141	73	4	1	137	553	690	2.58e-32	121
MsG0180005529.01.T01	AT4G26330	43.307	127	68	2	1	123	507	633	5.74e-32	120
MsG0180005529.01.T01	AT4G26330	43.307	127	68	2	1	123	521	647	6.20e-32	120
MsG0180005529.01.T01	AT5G59810	43.902	123	67	2	1	123	568	688	6.97e-31	117
MsG0180005529.01.T01	AT4G30020	40.690	145	75	3	1	137	598	739	8.81e-31	117
MsG0180005529.01.T01	AT4G30020	40.690	145	75	3	1	137	598	739	8.81e-31	117
MsG0180005529.01.T01	AT4G30020	40.690	145	75	3	1	137	598	739	8.81e-31	117
MsG0180005529.01.T01	AT4G30020	40.690	145	75	3	1	137	598	739	8.81e-31	117
MsG0180005529.01.T01	AT1G32980	39.726	146	86	2	1	145	7	151	1.25e-29	107
MsG0180005529.01.T01	AT2G19170	40.000	145	76	3	1	137	597	738	5.27e-29	112
MsG0180005529.01.T01	AT2G19170	40.000	145	76	3	1	137	597	738	5.27e-29	112
MsG0180005529.01.T01	AT5G11940	38.889	162	94	3	1	160	541	699	1.26e-28	110
MsG0180005529.01.T01	AT1G32970	40.816	147	83	3	1	145	513	657	1.98e-27	107
MsG0180005529.01.T01	AT4G10520	38.750	160	91	4	1	158	535	689	4.54e-27	106
MsG0180005529.01.T01	AT4G10530	38.750	160	91	4	1	158	526	680	5.54e-27	106
MsG0180005529.01.T01	AT5G59190	38.312	154	82	5	1	152	486	628	6.99e-27	105
MsG0180005529.01.T01	AT5G59100	34.591	159	92	4	1	155	529	679	1.04e-26	105
MsG0180005529.01.T01	AT5G58840	40.441	136	72	2	1	136	500	626	1.21e-26	105
MsG0180005529.01.T01	AT1G01900	46.094	128	63	3	1	123	553	679	1.63e-26	105
MsG0180005529.01.T01	AT1G32960	38.509	161	94	3	1	160	556	712	2.08e-26	104
MsG0180005529.01.T01	AT4G21326	39.837	123	72	2	2	123	479	600	5.09e-26	103
MsG0180005529.01.T01	AT4G21650	38.776	147	86	3	1	145	550	694	7.65e-26	103
MsG0180005529.01.T01	AT3G46840	36.250	160	93	4	1	157	528	681	9.22e-26	102
MsG0180005529.01.T01	AT4G10510	38.690	168	84	5	1	160	485	641	2.08e-25	101
MsG0180005529.01.T01	AT4G10510	38.690	168	84	5	1	160	500	656	2.49e-25	101
MsG0180005529.01.T01	AT4G10510	38.690	168	84	5	1	160	556	712	2.77e-25	101
MsG0180005529.01.T01	AT4G21323	34.940	166	99	3	1	157	581	746	2.87e-25	101
MsG0180005529.01.T01	AT4G10510	38.690	168	84	5	1	160	544	700	3.05e-25	101
MsG0180005529.01.T01	AT5G67090	39.506	162	74	5	1	158	530	671	3.64e-25	100
MsG0180005529.01.T01	AT3G46850	36.875	160	92	4	1	157	528	681	4.05e-25	100
MsG0180005529.01.T01	AT5G59130	42.623	122	61	3	1	122	515	627	6.01e-25	100
MsG0180005529.01.T01	AT5G59130	42.623	122	61	3	1	122	519	631	6.25e-25	100
MsG0180005529.01.T01	AT5G59130	42.623	122	61	3	1	122	509	621	6.36e-25	100
MsG0180005529.01.T01	AT5G59130	42.623	122	61	3	1	122	480	592	7.95e-25	100
MsG0180005529.01.T01	AT5G58830	35.256	156	89	4	1	153	499	645	1.05e-24	99.8
MsG0180005529.01.T01	AT5G59090	39.344	122	67	1	1	122	520	634	1.16e-24	99.8
MsG0180005529.01.T01	AT5G59090	39.344	122	67	1	1	122	518	632	1.24e-24	99.4
MsG0180005529.01.T01	AT1G32950	36.250	160	89	4	1	155	501	652	1.53e-24	99.4
MsG0180005529.01.T01	AT1G66210	36.913	149	86	3	1	145	540	684	1.75e-24	99.0
MsG0180005529.01.T01	AT1G32950	36.250	160	89	4	1	155	552	703	1.97e-24	99.0
MsG0180005529.01.T01	AT4G21630	37.838	148	86	3	1	145	543	687	2.19e-24	99.0
MsG0180005529.01.T01	AT4G00230	37.584	149	74	5	1	141	537	674	2.75e-24	98.6
MsG0180005529.01.T01	AT4G21640	37.415	147	88	3	1	145	517	661	2.88e-24	98.6
MsG0180005529.01.T01	AT4G10550	35.849	159	91	4	1	155	573	724	8.76e-24	97.1
MsG0180005529.01.T01	AT4G10550	35.849	159	91	4	1	155	557	708	9.26e-24	97.1
MsG0180005529.01.T01	AT4G10550	35.849	159	91	4	1	155	501	652	1.03e-23	97.1
MsG0180005529.01.T01	AT4G10550	35.849	159	91	4	1	155	501	652	1.03e-23	97.1
MsG0180005529.01.T01	AT1G62340	38.889	144	71	5	1	135	619	754	1.21e-23	96.7
MsG0180005529.01.T01	AT4G10540	35.849	159	91	4	1	155	554	705	1.32e-23	96.7
MsG0180005529.01.T01	AT1G66220	37.903	124	75	2	1	123	535	657	1.41e-23	96.7
MsG0180005529.01.T01	AT5G44530	41.985	131	66	4	1	123	620	748	1.58e-23	96.3
MsG0180005529.01.T01	AT1G20160	40.157	127	71	3	1	123	547	672	1.98e-23	96.3
MsG0180005529.01.T01	AT1G20160	40.157	127	71	3	1	123	508	633	2.41e-23	95.9
MsG0180005529.01.T01	AT5G59090	40.164	122	61	2	1	122	520	629	2.81e-23	95.5
MsG0180005529.01.T01	AT1G20150	40.559	143	73	5	1	135	551	689	6.97e-23	94.4
MsG0180005529.01.T01	AT1G30600	39.041	146	81	3	1	139	610	754	7.04e-23	94.4
MsG0180005529.01.T01	AT1G32940	37.241	145	86	3	12	155	564	704	7.17e-23	94.4
MsG0180005529.01.T01	AT4G15040	39.496	119	63	2	1	119	481	590	1.45e-22	93.6
MsG0180005529.01.T01	AT4G15040	39.496	119	63	2	1	119	481	590	1.45e-22	93.6
MsG0180005529.01.T01	AT1G32940	37.241	145	86	3	12	155	513	653	2.05e-22	93.2
MsG0180005529.01.T01	AT1G32940	37.241	145	86	3	12	155	513	653	2.05e-22	93.2
MsG0180005529.01.T01	AT5G59120	35.000	140	84	1	1	140	519	651	2.12e-22	93.2
MsG0180005529.01.T01	AT5G45650	34.810	158	94	3	1	158	579	727	2.29e-22	93.2
MsG0180005529.01.T01	AT5G45650	34.810	158	94	3	1	158	579	727	2.29e-22	93.2
MsG0180005529.01.T01	AT5G58820	39.344	122	65	2	1	122	496	608	3.98e-22	92.4
MsG0180005529.01.T01	AT5G03620	42.424	132	53	6	1	121	544	663	1.35e-21	90.9
MsG0180005529.01.T01	AT4G20430	40.152	132	67	5	1	123	635	763	4.71e-21	89.4
MsG0180005529.01.T01	AT4G20430	40.152	132	67	5	1	123	635	763	4.71e-21	89.4
MsG0180005529.01.T01	AT4G20430	40.152	132	67	5	1	123	611	739	6.52e-21	89.0
MsG0180005529.01.T01	AT5G45640	39.024	123	67	2	1	123	541	655	1.10e-20	88.2
MsG0180005529.01.T01	AT5G44530	35.897	156	65	6	1	123	620	773	4.49e-19	83.6
MsG0180005529.01.T01	AT2G39850	33.858	127	70	3	1	126	552	665	5.17e-18	80.5

Find 21 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTCATTGTTACACCATTTAA+AGG	0.178184	1:-92901487	MsG0180005529.01.T01:CDS
CACCAGCGAGCGCCTTTAAA+TGG	0.279131	1:+92901475	None:intergenic
GTGAATCGTCGAAGCAAAAT+TGG	0.296323	1:+92901550	None:intergenic
ATAGCAGCTGGACTCCATTC+AGG	0.318680	1:+92901886	None:intergenic
GCAGAAGAAGCATCTCTAAG+AGG	0.432819	1:+92901814	None:intergenic
CCTAGAAAAGCTCTTGATCC+AGG	0.449023	1:-92901748	MsG0180005529.01.T01:CDS
ATGTCATGTCCTCATGTAAG+TGG	0.481265	1:-92901937	MsG0180005529.01.T01:CDS
AGTATATGATATCGAACCTC+AGG	0.493737	1:-92901722	MsG0180005529.01.T01:CDS
TGGCCAGCACCATGATCATA+AGG	0.495707	1:+92901778	None:intergenic
TCAAAGCTAAACATCCTGAA+TGG	0.530445	1:-92901900	MsG0180005529.01.T01:CDS
CACCATTTAAAGGCGCTCGC+TGG	0.531618	1:-92901477	MsG0180005529.01.T01:CDS
ACACCTTATGATCATGGTGC+TGG	0.538752	1:-92901781	MsG0180005529.01.T01:CDS
GGAAACACAACTGATATAGC+AGG	0.548430	1:+92901583	None:intergenic
TCGATATCATATACTAAACC+TGG	0.561273	1:+92901730	None:intergenic
TCCTCATGTAAGTGGAATCG+CGG	0.624644	1:-92901929	MsG0180005529.01.T01:CDS
GACATGATATTTGAAACAGC+AGG	0.638882	1:+92901507	None:intergenic
TTGAAACAGCAGGACCACAT+TGG	0.639628	1:+92901517	None:intergenic
AGAAACTCAAAGTAATCCTG+AGG	0.669990	1:+92901706	None:intergenic
GCCGCGATTCCACTTACATG+AGG	0.688521	1:+92901928	None:intergenic
TCACCGCACTGTTACCAATG+TGG	0.690056	1:-92901531	MsG0180005529.01.T01:CDS
GGACCACATTGGTAACAGTG+CGG	0.782389	1:+92901528	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAACTACTAATTCTGAA+GGG	+	Chr1:92901746-92901765	None:intergenic	20.0%
!	GAAAAAACTACTAATTCTGA+AGG	+	Chr1:92901747-92901766	None:intergenic	25.0%
	GTCATTGTTACACCATTTAA+AGG	-	Chr1:92901921-92901940	MsG0180005529.01.T01:CDS	30.0%
	TCGATATCATATACTAAACC+TGG	+	Chr1:92901681-92901700	None:intergenic	30.0%
!	TTTTCAACACCTTATGATCA+TGG	-	Chr1:92901621-92901640	MsG0180005529.01.T01:CDS	30.0%
!!!	GAGCTTTTCTAGGATTAATA+TGG	+	Chr1:92901653-92901672	None:intergenic	30.0%
	AGAAACTCAAAGTAATCCTG+AGG	+	Chr1:92901705-92901724	None:intergenic	35.0%
	AGTATATGATATCGAACCTC+AGG	-	Chr1:92901686-92901705	MsG0180005529.01.T01:CDS	35.0%
	TCAAAGCTAAACATCCTGAA+TGG	-	Chr1:92901508-92901527	MsG0180005529.01.T01:CDS	35.0%
!	ATTGCAGATTTTATAGCAGC+TGG	+	Chr1:92901537-92901556	None:intergenic	35.0%
!	GACATGATATTTGAAACAGC+AGG	+	Chr1:92901904-92901923	None:intergenic	35.0%
!!	AGCAAAATTGGTTGTTTTGC+TGG	+	Chr1:92901849-92901868	None:intergenic	35.0%
	ATGTCATGTCCTCATGTAAG+TGG	-	Chr1:92901471-92901490	MsG0180005529.01.T01:CDS	40.0%
	GGAAACACAACTGATATAGC+AGG	+	Chr1:92901828-92901847	None:intergenic	40.0%
	GTGAATCGTCGAAGCAAAAT+TGG	+	Chr1:92901861-92901880	None:intergenic	40.0%
	ACACCTTATGATCATGGTGC+TGG	-	Chr1:92901627-92901646	MsG0180005529.01.T01:CDS	45.0%
	CCTAGAAAAGCTCTTGATCC+AGG	-	Chr1:92901660-92901679	MsG0180005529.01.T01:CDS	45.0%
	TCCTCATGTAAGTGGAATCG+CGG	-	Chr1:92901479-92901498	MsG0180005529.01.T01:CDS	45.0%
	TTGAAACAGCAGGACCACAT+TGG	+	Chr1:92901894-92901913	None:intergenic	45.0%
!	CCTGGATCAAGAGCTTTTCT+AGG	+	Chr1:92901663-92901682	None:intergenic	45.0%
!!	GCAGAAGAAGCATCTCTAAG+AGG	+	Chr1:92901597-92901616	None:intergenic	45.0%
	ATAGCAGCTGGACTCCATTC+AGG	+	Chr1:92901525-92901544	None:intergenic	50.0%
	TCACCGCACTGTTACCAATG+TGG	-	Chr1:92901877-92901896	MsG0180005529.01.T01:CDS	50.0%
	TGGCCAGCACCATGATCATA+AGG	+	Chr1:92901633-92901652	None:intergenic	50.0%
!	GGACCACATTGGTAACAGTG+CGG	+	Chr1:92901883-92901902	None:intergenic	50.0%
	CACCAGCGAGCGCCTTTAAA+TGG	+	Chr1:92901936-92901955	None:intergenic	55.0%
	GCCGCGATTCCACTTACATG+AGG	+	Chr1:92901483-92901502	None:intergenic	55.0%
!!	CACCATTTAAAGGCGCTCGC+TGG	-	Chr1:92901931-92901950	MsG0180005529.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	92901471	92901959	92901471	ID=MsG0180005529.01;Name=MsG0180005529.01
Chr1	mRNA	92901471	92901959	92901471	ID=MsG0180005529.01.T01;Parent=MsG0180005529.01;Name=MsG0180005529.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|162
Chr1	exon	92901471	92901959	92901471	ID=MsG0180005529.01.T01:exon:49822;Parent=MsG0180005529.01.T01
Chr1	CDS	92901471	92901959	92901471	ID=MsG0180005529.01.T01:cds;Parent=MsG0180005529.01.T01

Gene Sequence

>MsG0180005529.01.T01

ATGTCATGTCCTCATGTAAGTGGAATCGCGGCTATGATCAAAGCTAAACATCCTGAATGGAGTCCAGCTGCTATAAAATCTGCAATCATGACAACAGCTTATGTTCATGATAATACTATCAAACCTCTTAGAGATGCTTCTTCTGCTGAATTTTCAACACCTTATGATCATGGTGCTGGCCATATTAATCCTAGAAAAGCTCTTGATCCAGGTTTAGTATATGATATCGAACCTCAGGATTACTTTGAGTTTCTTTGCTCAAAGAAACTAAGCCCTTCAGAATTAGTAGTTTTTTCTAAAAATTCAAACAGAAATTGCAAACACACTCTTGCTAGTGCTAGTGACTTGAACTATCCTGCTATATCAGTTGTGTTTCCAGCAAAACAACCAATTTTGCTTCGACGATTCACCGCACTGTTACCAATGTGGTCCTGCTGTTTCAAATATCATGTCATTGTTACACCATTTAAAGGCGCTCGCTGGTGTTAA

Protein sequence

>MsG0180005529.01.T01

MSCPHVSGIAAMIKAKHPEWSPAAIKSAIMTTAYVHDNTIKPLRDASSAEFSTPYDHGAGHINPRKALDPGLVYDIEPQDYFEFLCSKKLSPSELVVFSKNSNRNCKHTLASASDLNYPAISVVFPAKQPILLRRFTALLPMWSCCFKYHVIVTPFKGARWC*