Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038987.01.T01 | XP_013449054.1 | 96.875 | 352 | 11 | 0 | 1 | 352 | 1 | 352 | 0 | 704 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038987.01.T01 | Q9LYX1 | 32.804 | 189 | 104 | 7 | 65 | 240 | 71 | 249 | 7.88E-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038987.01.T01 | A0A072U0X1 | 96.875 | 352 | 11 | 0 | 1 | 352 | 1 | 352 | 0.0 | 704 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048996.01 | MsG0780038987.01 | 0.824120 | 9.586022e-54 | 8.414202e-51 |
| MsG0180004375.01 | MsG0780038987.01 | 0.817314 | 3.516063e-52 | 2.551854e-49 |
| MsG0180005529.01 | MsG0780038987.01 | 0.814340 | 1.619531e-51 | 1.083827e-48 |
| MsG0280010977.01 | MsG0780038987.01 | 0.825681 | 4.104677e-54 | 3.767411e-51 |
| MsG0680034618.01 | MsG0780038987.01 | 0.814579 | 1.434137e-51 | 9.659488e-49 |
| MsG0480020847.01 | MsG0780038987.01 | 0.810745 | 9.894008e-51 | 6.013201e-48 |
| MsG0480023146.01 | MsG0780038987.01 | 0.807767 | 4.302678e-50 | 2.417105e-47 |
| MsG0580025645.01 | MsG0780038987.01 | 0.813375 | 2.642882e-51 | 1.723011e-48 |
| MsG0380016703.01 | MsG0780038987.01 | 0.812244 | 4.674918e-51 | 2.956971e-48 |
| MsG0780038987.01 | MsG0780041735.01 | 0.838569 | 2.660324e-57 | 3.577484e-54 |
| MsG0780038987.01 | MsG0880045915.01 | 0.810834 | 9.466462e-51 | 5.767020e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038987.01.T01 | MTR_7g066210 | 96.875 | 352 | 11 | 0 | 1 | 352 | 1 | 352 | 0.0 | 704 |
| MsG0780038987.01.T01 | MTR_4g019080 | 47.967 | 369 | 150 | 11 | 2 | 352 | 6 | 350 | 1.78e-102 | 306 |
| MsG0780038987.01.T01 | MTR_3g069910 | 31.212 | 330 | 202 | 7 | 36 | 352 | 27 | 344 | 3.56e-40 | 145 |
| MsG0780038987.01.T01 | MTR_5g068770 | 29.435 | 248 | 147 | 9 | 27 | 251 | 33 | 275 | 2.64e-19 | 89.7 |
| MsG0780038987.01.T01 | MTR_7g011345 | 54.545 | 77 | 28 | 3 | 260 | 330 | 1 | 76 | 6.68e-19 | 80.5 |
| MsG0780038987.01.T01 | MTR_5g077100 | 27.749 | 191 | 127 | 5 | 65 | 251 | 65 | 248 | 5.26e-13 | 70.5 |
| MsG0780038987.01.T01 | MTR_4g093080 | 26.154 | 325 | 197 | 15 | 9 | 313 | 10 | 311 | 1.43e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038987.01.T01 | AT5G01090 | 36.517 | 356 | 208 | 8 | 2 | 348 | 6 | 352 | 4.29e-57 | 189 |
| MsG0780038987.01.T01 | AT3G09190 | 32.153 | 367 | 212 | 12 | 1 | 352 | 1 | 345 | 5.15e-49 | 168 |
| MsG0780038987.01.T01 | AT3G09035 | 34.393 | 346 | 199 | 11 | 1 | 330 | 1 | 334 | 5.78e-39 | 141 |
| MsG0780038987.01.T01 | AT3G54080 | 28.344 | 314 | 199 | 8 | 33 | 339 | 39 | 333 | 7.39e-20 | 89.7 |
| MsG0780038987.01.T01 | AT5G03140 | 32.804 | 189 | 104 | 7 | 65 | 240 | 71 | 249 | 8.03e-14 | 73.2 |
| MsG0780038987.01.T01 | AT5G60270 | 29.389 | 262 | 143 | 14 | 13 | 251 | 13 | 255 | 1.33e-13 | 72.4 |
| MsG0780038987.01.T01 | AT4G02420 | 25.651 | 269 | 173 | 9 | 4 | 253 | 2 | 262 | 2.99e-12 | 68.2 |
| MsG0780038987.01.T01 | AT3G45430 | 28.400 | 250 | 138 | 11 | 25 | 251 | 26 | 257 | 9.84e-12 | 66.6 |
| MsG0780038987.01.T01 | AT3G45430 | 28.400 | 250 | 138 | 11 | 25 | 251 | 26 | 257 | 9.84e-12 | 66.6 |
| MsG0780038987.01.T01 | AT3G45430 | 28.400 | 250 | 138 | 11 | 25 | 251 | 26 | 257 | 9.84e-12 | 66.6 |
| MsG0780038987.01.T01 | AT4G29050 | 27.232 | 224 | 138 | 9 | 50 | 253 | 56 | 274 | 4.93e-11 | 64.3 |
| MsG0780038987.01.T01 | AT4G29050 | 27.232 | 224 | 138 | 9 | 50 | 253 | 42 | 260 | 5.02e-11 | 64.3 |
| MsG0780038987.01.T01 | AT3G53380 | 34.272 | 213 | 120 | 9 | 40 | 240 | 32 | 236 | 5.26e-11 | 64.3 |
Find 68 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTCTGAAGTTCTACTTTC+TGG | 0.086199 | 7:+56480014 | MsG0780038987.01.T01:CDS |
| TCTACTCCTTACCGTCTTTA+AGG | 0.115688 | 7:-56480892 | None:intergenic |
| CGGTTGATTTGTCGTATAAT+TGG | 0.149646 | 7:+56480504 | MsG0780038987.01.T01:CDS |
| ATTCTTGCTGCAATGATATT+TGG | 0.171092 | 7:+56480725 | MsG0780038987.01.T01:CDS |
| CTTTCTGGGTATGGTGATTC+TGG | 0.215665 | 7:+56480029 | MsG0780038987.01.T01:CDS |
| CAATGTGTCTTCTGTTAATA+TGG | 0.230739 | 7:+56480361 | MsG0780038987.01.T01:CDS |
| TTATGTATAAGAAACCTATT+AGG | 0.239703 | 7:+56480063 | MsG0780038987.01.T01:CDS |
| ATTCGAGGCGTTTGGAAGTT+AGG | 0.257696 | 7:+56480432 | MsG0780038987.01.T01:CDS |
| CCTAAAACAGACTTAAAGTT+TGG | 0.294269 | 7:-56479960 | None:intergenic |
| GGCAATGCAAAAGTTGTTAA+TGG | 0.301120 | 7:+56479990 | MsG0780038987.01.T01:CDS |
| TCAACATCAACAACCCTAAT+AGG | 0.311221 | 7:-56480077 | None:intergenic |
| TGCCATAGCAACGGATTAAC+CGG | 0.321414 | 7:-56480479 | None:intergenic |
| GGTTGAAGAAGAAGGATTCT+AGG | 0.325447 | 7:+56480234 | MsG0780038987.01.T01:CDS |
| GCTGCAATGATATTTGGTTC+TGG | 0.331142 | 7:+56480731 | MsG0780038987.01.T01:CDS |
| AATAAGAGTTCTGATAGTTT+TGG | 0.336551 | 7:+56480296 | MsG0780038987.01.T01:CDS |
| GACACATTGATTCTCTTAAC+AGG | 0.337112 | 7:-56480347 | None:intergenic |
| GTTCTGAAGTTCTACTTTCT+GGG | 0.348396 | 7:+56480015 | MsG0780038987.01.T01:CDS |
| GTTAATATGGTTATAAGAAA+TGG | 0.356759 | 7:+56480374 | MsG0780038987.01.T01:CDS |
| GGGTATGGTGATTCTGGAAA+TGG | 0.381506 | 7:+56480035 | MsG0780038987.01.T01:CDS |
| CTACTCCTTACCGTCTTTAA+GGG | 0.383301 | 7:-56480891 | None:intergenic |
| CTTTATTTGTGGACGATGTT+TGG | 0.394486 | 7:+56480782 | MsG0780038987.01.T01:CDS |
| CGTTTACCGTGCTTTATTTG+TGG | 0.398884 | 7:+56480771 | MsG0780038987.01.T01:CDS |
| ATTCATGGAGCTTTGATGTA+AGG | 0.399755 | 7:+56480594 | MsG0780038987.01.T01:CDS |
| GAAAATGACACCAACAACTT+TGG | 0.404568 | 7:-56480107 | None:intergenic |
| ACCTCACCTTCAAAACCCTT+TGG | 0.407181 | 7:-56480191 | None:intergenic |
| CGATTCGAATTCGAGGCGTT+TGG | 0.413633 | 7:+56480424 | MsG0780038987.01.T01:CDS |
| GAAGTTCTACTTTCTGGGTA+TGG | 0.415082 | 7:+56480020 | MsG0780038987.01.T01:CDS |
| ATGATATTTGGTTCTGGATG+TGG | 0.437343 | 7:+56480737 | MsG0780038987.01.T01:CDS |
| ATCTTTACCAAAATCATTGA+AGG | 0.448209 | 7:-56479937 | None:intergenic |
| CACAAAATGGTAATTGCAAA+GGG | 0.449089 | 7:-56479876 | None:intergenic |
| TATGTATAAGAAACCTATTA+GGG | 0.450617 | 7:+56480064 | MsG0780038987.01.T01:CDS |
| ATGGTGGAAAGTTGCATGCT+TGG | 0.462713 | 7:+56480393 | MsG0780038987.01.T01:CDS |
| TTTGGTATGGCTATTGATGT+TGG | 0.472678 | 7:+56480314 | MsG0780038987.01.T01:CDS |
| CAGGGTTTAGTTCAATGAAA+GGG | 0.476609 | 7:+56480546 | MsG0780038987.01.T01:CDS |
| TAATCCGTTGCTATGGCAAT+CGG | 0.479302 | 7:+56480484 | MsG0780038987.01.T01:CDS |
| TTCTTGTACTCGCAATCTAC+CGG | 0.482596 | 7:-56480845 | None:intergenic |
| TCACTCCTCGGTTTGTCTGC+CGG | 0.484257 | 7:-56480689 | None:intergenic |
| TTCTGGATGTGGAGCATTGG+CGG | 0.497741 | 7:+56480748 | MsG0780038987.01.T01:CDS |
| TTCATATGGGTTGAAGAAGA+AGG | 0.502183 | 7:+56480226 | MsG0780038987.01.T01:CDS |
| GTTGAAGAAGAAGGATTCTA+GGG | 0.507788 | 7:+56480235 | MsG0780038987.01.T01:CDS |
| GCAGGGTTTAGTTCAATGAA+AGG | 0.523068 | 7:+56480545 | MsG0780038987.01.T01:CDS |
| GCACAAAATGGTAATTGCAA+AGG | 0.523801 | 7:-56479877 | None:intergenic |
| GAAGTTAGGTTGAGTCGATA+CGG | 0.527036 | 7:+56480446 | MsG0780038987.01.T01:CDS |
| CTTAAAACACAATCACTCCT+CGG | 0.529819 | 7:-56480701 | None:intergenic |
| GGTATGGTGATTCTGGAAAT+GGG | 0.542258 | 7:+56480036 | MsG0780038987.01.T01:CDS |
| AGCCGGTTAATCCGTTGCTA+TGG | 0.550344 | 7:+56480477 | MsG0780038987.01.T01:CDS |
| TGAGGATGAACCAAAGTTGT+TGG | 0.554967 | 7:+56480097 | MsG0780038987.01.T01:CDS |
| TTGATTACGATTCGAATTCG+AGG | 0.555132 | 7:+56480417 | MsG0780038987.01.T01:CDS |
| ATGAAACAGGATCAAAAGCA+TGG | 0.563257 | 7:-56479908 | None:intergenic |
| TAAACCCCTTAAAGACGGTA+AGG | 0.565135 | 7:+56480886 | MsG0780038987.01.T01:CDS |
| AATATGGTTATAAGAAATGG+TGG | 0.569198 | 7:+56480377 | MsG0780038987.01.T01:CDS |
| ACACACTCCTCAGGCACCAC+AGG | 0.573937 | 7:-56480815 | None:intergenic |
| TATTAGGGTTGTTGATGTTG+AGG | 0.574500 | 7:+56480079 | MsG0780038987.01.T01:CDS |
| TACTCCTTACCGTCTTTAAG+GGG | 0.578634 | 7:-56480890 | None:intergenic |
| TGGTTCTGGATGTGGAGCAT+TGG | 0.589112 | 7:+56480745 | MsG0780038987.01.T01:CDS |
| GGCTGCATAACACACTCCTC+AGG | 0.595254 | 7:-56480824 | None:intergenic |
| TGAGGAGTGTGTTATGCAGC+CGG | 0.597347 | 7:+56480826 | MsG0780038987.01.T01:CDS |
| GTTGATAAACCCCTTAAAGA+CGG | 0.601702 | 7:+56480881 | MsG0780038987.01.T01:CDS |
| CTCCTCGGTTTGTCTGCCGG+TGG | 0.610373 | 7:-56480686 | None:intergenic |
| TCGATACGGTCATTCAAAGC+CGG | 0.614057 | 7:+56480460 | MsG0780038987.01.T01:CDS |
| TAGACGTCCTGTGGTGCCTG+AGG | 0.614399 | 7:+56480808 | MsG0780038987.01.T01:CDS |
| AATGCAAAAGTTGTTAATGG+TGG | 0.654640 | 7:+56479993 | MsG0780038987.01.T01:CDS |
| GTCGTATAATTGGACAACTG+AGG | 0.657756 | 7:+56480514 | MsG0780038987.01.T01:CDS |
| TAAGAACACATATAGTCCAC+CGG | 0.658317 | 7:+56480670 | MsG0780038987.01.T01:CDS |
| CATCGTCCACAAATAAAGCA+CGG | 0.676877 | 7:-56480777 | None:intergenic |
| TCAACCGATTGCCATAGCAA+CGG | 0.677633 | 7:-56480488 | None:intergenic |
| GTCCACCGGCAGACAAACCG+AGG | 0.687622 | 7:+56480684 | MsG0780038987.01.T01:CDS |
| GTTTGGTAATAGACGTCCTG+TGG | 0.727268 | 7:+56480799 | MsG0780038987.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAATATGGTTATAAGAAA+TGG | + | Chr7:56480374-56480393 | MsG0780038987.01.T01:CDS | 20.0% |
| !! | TATGTATAAGAAACCTATTA+GGG | + | Chr7:56480064-56480083 | MsG0780038987.01.T01:CDS | 20.0% |
| !! | TTATGTATAAGAAACCTATT+AGG | + | Chr7:56480063-56480082 | MsG0780038987.01.T01:CDS | 20.0% |
| ! | AATATGGTTATAAGAAATGG+TGG | + | Chr7:56480377-56480396 | MsG0780038987.01.T01:CDS | 25.0% |
| ! | ATCTTTACCAAAATCATTGA+AGG | - | Chr7:56479940-56479959 | None:intergenic | 25.0% |
| !! | TAATAAGCTTTTGTATCCAT+CGG | - | Chr7:56480647-56480666 | None:intergenic | 25.0% |
| !! | TCTTTTTCCTTCAATGATTT+TGG | + | Chr7:56479930-56479949 | MsG0780038987.01.T01:CDS | 25.0% |
| !!! | AAGTCTGTTTTAGGATTTTA+TGG | + | Chr7:56479969-56479988 | MsG0780038987.01.T01:CDS | 25.0% |
| !!! | AATAAGAGTTCTGATAGTTT+TGG | + | Chr7:56480296-56480315 | MsG0780038987.01.T01:CDS | 25.0% |
| !!! | ATGGATTTTTAAGCACAAAA+TGG | - | Chr7:56479892-56479911 | None:intergenic | 25.0% |
| !!! | TTTGAGTTTTCATTGTCTTT+TGG | + | Chr7:56480137-56480156 | MsG0780038987.01.T01:CDS | 25.0% |
| !!! | TTTTTGGTAATGGTTCATAT+GGG | + | Chr7:56480213-56480232 | MsG0780038987.01.T01:CDS | 25.0% |
| AATGCAAAAGTTGTTAATGG+TGG | + | Chr7:56479993-56480012 | MsG0780038987.01.T01:CDS | 30.0% | |
| ATTCTTGCTGCAATGATATT+TGG | + | Chr7:56480725-56480744 | MsG0780038987.01.T01:CDS | 30.0% | |
| CAATGTGTCTTCTGTTAATA+TGG | + | Chr7:56480361-56480380 | MsG0780038987.01.T01:CDS | 30.0% | |
| CACAAAATGGTAATTGCAAA+GGG | - | Chr7:56479879-56479898 | None:intergenic | 30.0% | |
| CCTAAAACAGACTTAAAGTT+TGG | - | Chr7:56479963-56479982 | None:intergenic | 30.0% | |
| TTGAAGGAAAAAGATGAAAC+AGG | - | Chr7:56479924-56479943 | None:intergenic | 30.0% | |
| ! | AAGCATGTTTTCTCTATTCA+TGG | + | Chr7:56480579-56480598 | MsG0780038987.01.T01:CDS | 30.0% |
| ! | CCAAACTTTAAGTCTGTTTT+AGG | + | Chr7:56479960-56479979 | MsG0780038987.01.T01:CDS | 30.0% |
| ! | TTTTCATTGTCTTTTGGTGA+TGG | + | Chr7:56480143-56480162 | MsG0780038987.01.T01:CDS | 30.0% |
| !!! | GCTTTTGTTATTGTTCCAAA+GGG | + | Chr7:56480176-56480195 | MsG0780038987.01.T01:CDS | 30.0% |
| !!! | GTTTTTGGTAATGGTTCATA+TGG | + | Chr7:56480212-56480231 | MsG0780038987.01.T01:CDS | 30.0% |
| ATGAAACAGGATCAAAAGCA+TGG | - | Chr7:56479911-56479930 | None:intergenic | 35.0% | |
| CTTAAAACACAATCACTCCT+CGG | - | Chr7:56480704-56480723 | None:intergenic | 35.0% | |
| GAAAATGACACCAACAACTT+TGG | - | Chr7:56480110-56480129 | None:intergenic | 35.0% | |
| GCACAAAATGGTAATTGCAA+AGG | - | Chr7:56479880-56479899 | None:intergenic | 35.0% | |
| GGCAATGCAAAAGTTGTTAA+TGG | + | Chr7:56479990-56480009 | MsG0780038987.01.T01:CDS | 35.0% | |
| GTTGAAGAAGAAGGATTCTA+GGG | + | Chr7:56480235-56480254 | MsG0780038987.01.T01:CDS | 35.0% | |
| TAAGAACACATATAGTCCAC+CGG | + | Chr7:56480670-56480689 | MsG0780038987.01.T01:CDS | 35.0% | |
| TATTAGGGTTGTTGATGTTG+AGG | + | Chr7:56480079-56480098 | MsG0780038987.01.T01:CDS | 35.0% | |
| TCAACATCAACAACCCTAAT+AGG | - | Chr7:56480080-56480099 | None:intergenic | 35.0% | |
| TTGATTACGATTCGAATTCG+AGG | + | Chr7:56480417-56480436 | MsG0780038987.01.T01:CDS | 35.0% | |
| TTTGGTATGGCTATTGATGT+TGG | + | Chr7:56480314-56480333 | MsG0780038987.01.T01:CDS | 35.0% | |
| ! | ATTCATGGAGCTTTGATGTA+AGG | + | Chr7:56480594-56480613 | MsG0780038987.01.T01:CDS | 35.0% |
| ! | CAGGGTTTAGTTCAATGAAA+GGG | + | Chr7:56480546-56480565 | MsG0780038987.01.T01:CDS | 35.0% |
| ! | CTTTATTTGTGGACGATGTT+TGG | + | Chr7:56480782-56480801 | MsG0780038987.01.T01:CDS | 35.0% |
| ! | GTTGATAAACCCCTTAAAGA+CGG | + | Chr7:56480881-56480900 | MsG0780038987.01.T01:CDS | 35.0% |
| ! | TTCATATGGGTTGAAGAAGA+AGG | + | Chr7:56480226-56480245 | MsG0780038987.01.T01:CDS | 35.0% |
| !! | ATGATATTTGGTTCTGGATG+TGG | + | Chr7:56480737-56480756 | MsG0780038987.01.T01:CDS | 35.0% |
| !! | ATTGTTCCAAAGGGTTTTGA+AGG | + | Chr7:56480185-56480204 | MsG0780038987.01.T01:CDS | 35.0% |
| !! | CGGTTGATTTGTCGTATAAT+TGG | + | Chr7:56480504-56480523 | MsG0780038987.01.T01:CDS | 35.0% |
| !! | GACACATTGATTCTCTTAAC+AGG | - | Chr7:56480350-56480369 | None:intergenic | 35.0% |
| !! | GCTTTGATGTAAGGCATTTT+CGG | + | Chr7:56480603-56480622 | MsG0780038987.01.T01:CDS | 35.0% |
| !! | GTTCTGAAGTTCTACTTTCT+GGG | + | Chr7:56480015-56480034 | MsG0780038987.01.T01:CDS | 35.0% |
| !!! | GAGTTCTGATAGTTTTGGTA+TGG | + | Chr7:56480301-56480320 | MsG0780038987.01.T01:CDS | 35.0% |
| !!! | GGCTTTTGTTATTGTTCCAA+AGG | + | Chr7:56480175-56480194 | MsG0780038987.01.T01:CDS | 35.0% |
| !!! | TGTCTTTTGGTGATGGAAAT+GGG | + | Chr7:56480150-56480169 | MsG0780038987.01.T01:CDS | 35.0% |
| !!! | TTGTCTTTTGGTGATGGAAA+TGG | + | Chr7:56480149-56480168 | MsG0780038987.01.T01:CDS | 35.0% |
| CATCGTCCACAAATAAAGCA+CGG | - | Chr7:56480780-56480799 | None:intergenic | 40.0% | |
| CTACTCCTTACCGTCTTTAA+GGG | - | Chr7:56480894-56480913 | None:intergenic | 40.0% | |
| GAAGTTCTACTTTCTGGGTA+TGG | + | Chr7:56480020-56480039 | MsG0780038987.01.T01:CDS | 40.0% | |
| GGTTGAAGAAGAAGGATTCT+AGG | + | Chr7:56480234-56480253 | MsG0780038987.01.T01:CDS | 40.0% | |
| GTCGTATAATTGGACAACTG+AGG | + | Chr7:56480514-56480533 | MsG0780038987.01.T01:CDS | 40.0% | |
| TAAACCCCTTAAAGACGGTA+AGG | + | Chr7:56480886-56480905 | MsG0780038987.01.T01:CDS | 40.0% | |
| TAATCCGTTGCTATGGCAAT+CGG | + | Chr7:56480484-56480503 | MsG0780038987.01.T01:CDS | 40.0% | |
| TACTCCTTACCGTCTTTAAG+GGG | - | Chr7:56480893-56480912 | None:intergenic | 40.0% | |
| TGAGGATGAACCAAAGTTGT+TGG | + | Chr7:56480097-56480116 | MsG0780038987.01.T01:CDS | 40.0% | |
| TTCTTGTACTCGCAATCTAC+CGG | - | Chr7:56480848-56480867 | None:intergenic | 40.0% | |
| ! | ACAACTGAGGAGATTTTTGC+AGG | + | Chr7:56480527-56480546 | MsG0780038987.01.T01:CDS | 40.0% |
| ! | CAACTGAGGAGATTTTTGCA+GGG | + | Chr7:56480528-56480547 | MsG0780038987.01.T01:CDS | 40.0% |
| ! | GCAGGGTTTAGTTCAATGAA+AGG | + | Chr7:56480545-56480564 | MsG0780038987.01.T01:CDS | 40.0% |
| ! | GCTGCAATGATATTTGGTTC+TGG | + | Chr7:56480731-56480750 | MsG0780038987.01.T01:CDS | 40.0% |
| ! | GGTATGGTGATTCTGGAAAT+GGG | + | Chr7:56480036-56480055 | MsG0780038987.01.T01:CDS | 40.0% |
| ! | TTTTATGCATTCTGAGCCGA+TGG | + | Chr7:56480628-56480647 | MsG0780038987.01.T01:CDS | 40.0% |
| !! | CGTTTACCGTGCTTTATTTG+TGG | + | Chr7:56480771-56480790 | MsG0780038987.01.T01:CDS | 40.0% |
| !! | GAAGTTAGGTTGAGTCGATA+CGG | + | Chr7:56480446-56480465 | MsG0780038987.01.T01:CDS | 40.0% |
| !! | GGTTCTGAAGTTCTACTTTC+TGG | + | Chr7:56480014-56480033 | MsG0780038987.01.T01:CDS | 40.0% |
| !!! | GAAGGTGAGGTTTTTGGTAA+TGG | + | Chr7:56480203-56480222 | MsG0780038987.01.T01:CDS | 40.0% |
| !!! | GGTTTTGAAGGTGAGGTTTT+TGG | + | Chr7:56480197-56480216 | MsG0780038987.01.T01:CDS | 40.0% |
| !!! | TTTTGGTGATGGAAATGGGT+TGG | + | Chr7:56480154-56480173 | MsG0780038987.01.T01:CDS | 40.0% |
| ACCTCACCTTCAAAACCCTT+TGG | - | Chr7:56480194-56480213 | None:intergenic | 45.0% | |
| CTTTCTGGGTATGGTGATTC+TGG | + | Chr7:56480029-56480048 | MsG0780038987.01.T01:CDS | 45.0% | |
| TCAACCGATTGCCATAGCAA+CGG | - | Chr7:56480491-56480510 | None:intergenic | 45.0% | |
| TCGATACGGTCATTCAAAGC+CGG | + | Chr7:56480460-56480479 | MsG0780038987.01.T01:CDS | 45.0% | |
| ! | ATGGTGGAAAGTTGCATGCT+TGG | + | Chr7:56480393-56480412 | MsG0780038987.01.T01:CDS | 45.0% |
| ! | ATTCGAGGCGTTTGGAAGTT+AGG | + | Chr7:56480432-56480451 | MsG0780038987.01.T01:CDS | 45.0% |
| ! | GGGTATGGTGATTCTGGAAA+TGG | + | Chr7:56480035-56480054 | MsG0780038987.01.T01:CDS | 45.0% |
| ! | GTTTGGTAATAGACGTCCTG+TGG | + | Chr7:56480799-56480818 | MsG0780038987.01.T01:CDS | 45.0% |
| !! | TGCCATAGCAACGGATTAAC+CGG | - | Chr7:56480482-56480501 | None:intergenic | 45.0% |
| !!! | TCCAAAGGGTTTTGAAGGTG+AGG | + | Chr7:56480190-56480209 | MsG0780038987.01.T01:CDS | 45.0% |
| AGCCGGTTAATCCGTTGCTA+TGG | + | Chr7:56480477-56480496 | MsG0780038987.01.T01:CDS | 50.0% | |
| ! | CGATTCGAATTCGAGGCGTT+TGG | + | Chr7:56480424-56480443 | MsG0780038987.01.T01:CDS | 50.0% |
| ! | TGAGGAGTGTGTTATGCAGC+CGG | + | Chr7:56480826-56480845 | MsG0780038987.01.T01:CDS | 50.0% |
| !! | TGGTTCTGGATGTGGAGCAT+TGG | + | Chr7:56480745-56480764 | MsG0780038987.01.T01:CDS | 50.0% |
| !! | TTCTGGATGTGGAGCATTGG+CGG | + | Chr7:56480748-56480767 | MsG0780038987.01.T01:CDS | 50.0% |
| GGCTGCATAACACACTCCTC+AGG | - | Chr7:56480827-56480846 | None:intergenic | 55.0% | |
| ! | TCACTCCTCGGTTTGTCTGC+CGG | - | Chr7:56480692-56480711 | None:intergenic | 55.0% |
| ACACACTCCTCAGGCACCAC+AGG | - | Chr7:56480818-56480837 | None:intergenic | 60.0% | |
| TAGACGTCCTGTGGTGCCTG+AGG | + | Chr7:56480808-56480827 | MsG0780038987.01.T01:CDS | 60.0% | |
| GTCCACCGGCAGACAAACCG+AGG | + | Chr7:56480684-56480703 | MsG0780038987.01.T01:CDS | 65.0% | |
| ! | CTCCTCGGTTTGTCTGCCGG+TGG | - | Chr7:56480689-56480708 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 56479855 | 56480913 | 56479855 | ID=MsG0780038987.01;Name=MsG0780038987.01 |
| Chr7 | mRNA | 56479855 | 56480913 | 56479855 | ID=MsG0780038987.01.T01;Parent=MsG0780038987.01;Name=MsG0780038987.01.T01;_AED=0.14;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|352 |
| Chr7 | exon | 56479855 | 56480913 | 56479855 | ID=MsG0780038987.01.T01:exon:7960;Parent=MsG0780038987.01.T01 |
| Chr7 | CDS | 56479855 | 56480913 | 56479855 | ID=MsG0780038987.01.T01:cds;Parent=MsG0780038987.01.T01 |
| Gene Sequence |
| Protein sequence |
