AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000115.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000115.01.T01 MTR_1g023120 97.387 421 8 1 296 716 328 745 0.0 847
MsG0180000115.01.T01 MTR_1g023120 84.667 300 10 1 1 300 1 264 6.29e-180 531
MsG0180000115.01.T01 MTR_1g023120 97.387 421 8 1 296 716 270 687 0.0 846
MsG0180000115.01.T01 MTR_1g023120 82.645 242 6 1 59 300 1 206 2.39e-137 420
MsG0180000115.01.T01 MTR_2g094020 46.381 746 322 14 9 701 7 727 0.0 647
MsG0180000115.01.T01 MTR_3g112370 75.430 407 95 3 296 701 327 729 0.0 641
MsG0180000115.01.T01 MTR_3g112370 73.179 302 40 3 1 300 1 263 5.55e-151 456
MsG0180000115.01.T01 MTR_2g094060 46.269 737 332 14 9 701 7 723 0.0 634
MsG0180000115.01.T01 MTR_4g059680 45.946 740 335 17 9 701 8 729 0.0 615
MsG0180000115.01.T01 MTR_3g096900 42.627 746 356 15 13 705 14 740 0.0 579
MsG0180000115.01.T01 MTR_5g021190 64.865 407 138 3 296 701 325 727 0.0 560
MsG0180000115.01.T01 MTR_5g021190 68.333 300 56 2 1 300 1 261 3.07e-138 427
MsG0180000115.01.T01 MTR_3g088520 42.959 703 327 11 27 694 24 687 0.0 542
MsG0180000115.01.T01 MTR_3g096900 41.702 705 340 14 13 664 14 700 6.60e-179 527
MsG0180000115.01.T01 MTR_2g042610 39.756 737 389 14 6 694 2 731 1.76e-171 513
MsG0180000115.01.T01 MTR_4g073290 38.082 730 379 12 10 695 3 703 3.98e-167 501
MsG0180000115.01.T01 MTR_3g117840 38.952 706 361 15 28 695 34 707 6.40e-167 501
MsG0180000115.01.T01 MTR_3g088520 41.878 671 316 11 59 694 1 632 8.45e-167 494
MsG0180000115.01.T01 MTR_3g096910 37.871 742 315 14 29 694 27 698 3.52e-159 477
MsG0180000115.01.T01 MTR_8g016230 56.776 428 171 8 296 715 324 745 5.84e-157 475
MsG0180000115.01.T01 MTR_8g016230 65.541 296 60 3 8 300 4 260 6.68e-126 395
MsG0180000115.01.T01 MTR_2g039120 56.296 405 170 5 296 698 327 726 1.19e-156 471
MsG0180000115.01.T01 MTR_2g039120 54.098 366 118 4 1 366 3 318 7.88e-126 391
MsG0180000115.01.T01 MTR_1g018200 54.680 406 176 6 296 698 330 730 2.08e-151 457
MsG0180000115.01.T01 MTR_1g018200 55.263 342 106 4 25 366 27 321 1.58e-123 385
MsG0180000115.01.T01 MTR_3g096900 41.046 631 305 12 13 594 14 626 2.93e-151 454
MsG0180000115.01.T01 MTR_2g100110 54.673 428 180 8 296 715 327 748 3.98e-147 450
MsG0180000115.01.T01 MTR_2g100110 68.132 273 51 1 28 300 27 263 9.64e-125 392
MsG0180000115.01.T01 MTR_2g039120 55.256 371 159 5 296 664 327 692 4.10e-138 422
MsG0180000115.01.T01 MTR_2g039120 54.098 366 118 4 1 366 3 318 2.35e-126 392
MsG0180000115.01.T01 MTR_2g100110 67.391 276 54 1 25 300 24 263 4.02e-128 393
MsG0180000115.01.T01 MTR_2g100110 53.184 267 117 5 296 559 327 588 4.92e-84 277
MsG0180000115.01.T01 MTR_2g039120 54.098 366 118 4 1 366 3 318 3.43e-127 391
MsG0180000115.01.T01 MTR_2g039120 52.830 265 120 3 296 559 327 587 4.44e-86 283
MsG0180000115.01.T01 MTR_2g039120 54.098 366 118 4 1 366 3 318 8.20e-127 392
MsG0180000115.01.T01 MTR_2g039120 52.145 303 139 4 296 597 327 624 3.80e-98 317
MsG0180000115.01.T01 MTR_2g094060 58.562 292 80 2 9 300 7 257 4.28e-115 362
MsG0180000115.01.T01 MTR_2g094060 43.536 379 187 9 296 662 321 684 2.10e-90 297
MsG0180000115.01.T01 MTR_2g094060 58.562 292 80 2 9 300 7 257 8.14e-114 362
MsG0180000115.01.T01 MTR_2g094060 44.019 418 207 9 296 701 321 723 1.11e-104 338
MsG0180000115.01.T01 MTR_8g085210 47.788 339 130 5 28 366 49 340 7.87e-96 317
MsG0180000115.01.T01 MTR_8g085210 40.367 436 213 11 296 694 349 774 1.61e-90 302
MsG0180000115.01.T01 MTR_5g024080 52.015 273 95 1 29 301 10 246 4.07e-91 302
MsG0180000115.01.T01 MTR_5g024080 37.321 418 241 9 296 701 309 717 9.95e-77 263
MsG0180000115.01.T01 MTR_5g025830 44.083 338 142 4 29 366 28 318 1.89e-89 298
MsG0180000115.01.T01 MTR_5g025830 37.740 416 239 11 296 701 327 732 4.22e-79 270
MsG0180000115.01.T01 MTR_3g096910 31.553 618 277 14 153 694 1 548 2.56e-89 291
MsG0180000115.01.T01 MTR_3g005570 41.484 364 164 4 3 366 2 316 3.19e-89 297
MsG0180000115.01.T01 MTR_3g005570 37.692 390 220 11 296 672 325 704 7.70e-69 241
MsG0180000115.01.T01 MTR_4g126330 56.707 164 69 2 502 664 282 444 1.34e-55 197
MsG0180000115.01.T01 MTR_4g126330 81.522 92 17 0 84 175 25 116 1.53e-44 166
MsG0180000115.01.T01 MTR_5g022590 31.511 311 148 6 48 327 11 287 1.43e-37 145
MsG0180000115.01.T01 MTR_3g005610 30.065 306 173 9 388 686 9 280 6.07e-33 129
MsG0180000115.01.T01 MTR_2g059440 31.715 309 170 12 385 686 5 279 6.23e-33 129
MsG0180000115.01.T01 MTR_2g100000 41.139 158 80 2 39 190 64 214 2.23e-25 112
MsG0180000115.01.T01 MTR_2g059430 29.304 273 128 8 414 686 4 211 2.87e-23 99.8
MsG0180000115.01.T01 MTR_8g076800 59.259 54 22 0 147 200 6 59 3.80e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000115.01.T01 AT3G13750 55.691 738 269 13 5 701 16 736 0.0 791
MsG0180000115.01.T01 AT5G56870 52.925 735 298 9 1 698 1 724 0.0 752
MsG0180000115.01.T01 AT2G32810 42.629 753 349 16 9 694 19 755 0.0 584
MsG0180000115.01.T01 AT2G32810 42.629 753 349 16 9 694 19 755 0.0 583
MsG0180000115.01.T01 AT1G45130 66.256 406 133 2 296 700 330 732 0.0 571
MsG0180000115.01.T01 AT1G45130 69.257 296 53 3 6 300 8 266 2.31e-141 432
MsG0180000115.01.T01 AT1G45130 66.256 406 133 2 296 700 251 653 0.0 571
MsG0180000115.01.T01 AT1G45130 67.143 210 33 1 91 300 14 187 3.99e-92 301
MsG0180000115.01.T01 AT4G36360 63.951 405 142 2 296 699 332 733 0.0 557
MsG0180000115.01.T01 AT4G36360 65.993 297 65 1 4 300 8 268 4.33e-137 424
MsG0180000115.01.T01 AT4G36360 63.951 405 142 2 296 699 332 733 0.0 557
MsG0180000115.01.T01 AT4G36360 65.993 297 65 1 4 300 8 268 4.17e-137 424
MsG0180000115.01.T01 AT1G77410 41.851 724 344 16 9 694 8 692 1.88e-176 525
MsG0180000115.01.T01 AT1G77410 41.564 729 344 17 9 694 8 697 4.23e-174 519
MsG0180000115.01.T01 AT2G16730 39.342 699 349 13 28 684 43 708 9.53e-163 491
MsG0180000115.01.T01 AT1G31740 38.451 710 334 14 29 689 22 677 2.65e-156 472
MsG0180000115.01.T01 AT4G35010 38.417 695 361 13 28 684 40 705 3.12e-156 474
MsG0180000115.01.T01 AT3G52840 53.960 404 180 4 296 698 327 725 7.00e-153 461
MsG0180000115.01.T01 AT3G52840 64.184 282 62 2 22 300 19 264 2.77e-120 377
MsG0180000115.01.T01 AT3G52840 53.960 404 180 4 296 698 381 779 1.60e-152 462
MsG0180000115.01.T01 AT3G52840 64.184 282 62 2 22 300 73 318 5.38e-120 378
MsG0180000115.01.T01 AT4G26140 53.941 406 178 6 296 698 327 726 2.07e-152 460
MsG0180000115.01.T01 AT4G26140 57.020 349 103 4 9 353 12 317 3.79e-125 389
MsG0180000115.01.T01 AT4G26140 51.168 428 181 6 296 698 327 751 3.62e-149 452
MsG0180000115.01.T01 AT4G26140 57.020 349 103 4 9 353 12 317 6.92e-125 390
MsG0180000115.01.T01 AT4G38590 37.220 669 350 15 59 687 1 639 3.17e-136 421
MsG0180000115.01.T01 AT4G26140 48.731 394 174 6 296 664 327 717 1.98e-128 398
MsG0180000115.01.T01 AT4G26140 57.020 349 103 4 9 353 12 317 2.35e-125 390
MsG0180000115.01.T01 AT4G26140 57.958 333 96 3 25 353 25 317 1.87e-127 390
MsG0180000115.01.T01 AT4G26140 51.271 236 108 4 296 529 327 557 2.14e-71 243
MsG0180000115.01.T01 AT4G26140 66.304 276 57 1 25 300 25 264 5.19e-127 390
MsG0180000115.01.T01 AT4G26140 46.899 258 111 4 296 529 327 582 3.64e-68 235
MsG0180000115.01.T01 AT4G26140 66.304 276 57 1 25 300 25 264 5.19e-127 390
MsG0180000115.01.T01 AT4G26140 46.899 258 111 4 296 529 327 582 3.64e-68 235
MsG0180000115.01.T01 AT4G26140 57.020 349 103 4 9 353 12 317 1.62e-126 390
MsG0180000115.01.T01 AT4G26140 49.836 305 145 5 296 598 327 625 1.59e-97 315
MsG0180000115.01.T01 AT4G26140 57.020 349 103 4 9 353 12 317 1.72e-126 390
MsG0180000115.01.T01 AT4G26140 49.669 302 146 4 296 597 327 622 5.92e-98 316
MsG0180000115.01.T01 AT4G26140 57.020 349 103 4 9 353 12 317 1.72e-126 390
MsG0180000115.01.T01 AT4G26140 49.669 302 146 4 296 597 327 622 5.92e-98 316
MsG0180000115.01.T01 AT1G77410 39.404 604 292 15 129 694 19 586 1.92e-123 384
MsG0180000115.01.T01 AT1G77410 39.404 604 292 15 129 694 19 586 1.92e-123 384
MsG0180000115.01.T01 AT2G28470 60.584 274 72 1 27 300 30 267 4.78e-112 355
MsG0180000115.01.T01 AT2G28470 45.000 380 186 9 296 662 331 700 7.28e-94 306
MsG0180000115.01.T01 AT2G28470 60.806 273 71 1 28 300 25 261 7.52e-111 355
MsG0180000115.01.T01 AT2G28470 46.024 415 201 9 296 697 325 729 1.50e-110 355
MsG0180000115.01.T01 AT2G28470 60.806 273 71 1 28 300 25 261 7.52e-111 355
MsG0180000115.01.T01 AT2G28470 46.024 415 201 9 296 697 325 729 1.50e-110 355
MsG0180000115.01.T01 AT2G28470 60.806 273 71 1 28 300 31 267 8.98e-111 355
MsG0180000115.01.T01 AT2G28470 46.024 415 201 9 296 697 331 735 1.63e-110 355
MsG0180000115.01.T01 AT2G28470 60.806 273 71 1 28 300 31 267 8.98e-111 355
MsG0180000115.01.T01 AT2G28470 46.024 415 201 9 296 697 331 735 1.63e-110 355
MsG0180000115.01.T01 AT5G63810 42.615 413 221 7 297 699 332 738 1.04e-107 344
MsG0180000115.01.T01 AT5G63810 45.110 317 137 2 1 317 4 283 5.65e-91 300
MsG0180000115.01.T01 AT4G38590 32.295 706 338 18 55 687 65 703 8.76e-104 341
MsG0180000115.01.T01 AT5G63800 46.629 356 141 5 6 352 7 322 1.27e-95 311
MsG0180000115.01.T01 AT5G63800 37.561 410 206 13 296 694 332 702 2.30e-74 255
MsG0180000115.01.T01 AT5G20710 52.000 300 107 2 1 300 1 263 1.69e-95 314
MsG0180000115.01.T01 AT5G20710 38.038 418 238 9 296 701 327 735 6.20e-83 280
MsG0180000115.01.T01 AT5G20710 38.038 418 238 9 296 701 122 530 2.56e-84 279
MsG0180000115.01.T01 AT2G04060 27.465 426 197 12 207 631 1 315 6.20e-39 150
MsG0180000115.01.T01 AT2G04062 41.279 172 80 2 29 200 7 157 1.35e-34 129
MsG0180000115.01.T01 AT1G72990 42.775 173 91 3 39 210 18 183 3.05e-32 133
MsG0180000115.01.T01 AT1G72990 42.775 173 91 3 39 210 73 238 3.38e-32 133
MsG0180000115.01.T01 AT1G72990 42.775 173 91 3 39 210 73 238 3.38e-32 133
MsG0180000115.01.T01 AT1G72990 40.741 162 88 3 50 210 22 176 8.45e-27 116

Find 186 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTCTCTATCTTCTTTCT+TGG 0.154990 1:-1647480 MsG0180000115.01.T01:CDS
CTTACTTGAGAAAGAATTAT+TGG 0.166765 1:+1646593 None:intergenic
AACTTTATTCTTCATAATTA+TGG 0.177081 1:+1643203 None:intergenic
TTTAGGCTTGTATGGTTTAT+TGG 0.180144 1:+1646009 None:intergenic
GGCAATTATATTGATGAAAA+TGG 0.217372 1:+1642878 None:intergenic
CTGACTTCCATGATTCAAAA+TGG 0.224983 1:+1644141 None:intergenic
GAGACACTAGTGACTATTTA+TGG 0.238905 1:-1644881 MsG0180000115.01.T01:CDS
AATTACAAATCAACCTTAAA+AGG 0.254271 1:+1646770 None:intergenic
ATGAAAATGGTCCCTTCTTC+TGG 0.266456 1:+1642891 None:intergenic
CACAAACAGGTTGGCCTAAA+GGG 0.278304 1:-1643933 MsG0180000115.01.T01:intron
ATTTATCTGTAGGAAATAAT+TGG 0.285885 1:+1646066 None:intergenic
TCCTTCAAATGACCATATTT+AGG 0.289683 1:+1645464 None:intergenic
TCAAGACCATGAAGCAAAAT+TGG 0.291254 1:+1644107 None:intergenic
GGAAGAGCACTTGGAGCTTC+TGG 0.302471 1:-1646400 MsG0180000115.01.T01:CDS
CTGGTCATGCATACTCAAAC+TGG 0.311005 1:-1646381 MsG0180000115.01.T01:CDS
TTATTGATACTTATGTGTTT+TGG 0.314153 1:-1647209 MsG0180000115.01.T01:CDS
TTAGGCTTGTATGGTTTATT+GGG 0.316421 1:+1646010 None:intergenic
GTTGTATTAGTCATTAAATT+TGG 0.316432 1:+1643274 None:intergenic
GGCTAACTCACCACTGGATC+TGG 0.328635 1:+1646292 None:intergenic
GACAGAAGTTTCACATTTAA+CGG 0.332873 1:-1644316 MsG0180000115.01.T01:CDS
GATCCTACTGTTACATCATT+AGG 0.334094 1:-1645395 MsG0180000115.01.T01:CDS
TATACTTCAGGGGTGCTTCT+TGG 0.336445 1:+1647363 None:intergenic
TAGAATTGCTAGGCAACATT+TGG 0.341066 1:+1645003 None:intergenic
TTGTAGATTGAGAATGAGTA+TGG 0.341574 1:-1646430 MsG0180000115.01.T01:intron
GTTTGGTTGAAGTATGTTCC+TGG 0.342045 1:-1646818 MsG0180000115.01.T01:CDS
ATTTAGATTAGCAGTGAGTT+TGG 0.343191 1:+1646135 None:intergenic
CAGGCACATGTATTCTCTTC+AGG 0.348044 1:-1645287 MsG0180000115.01.T01:CDS
TACTCATGCAATTATTTAGT+TGG 0.353458 1:-1642975 MsG0180000115.01.T01:three_prime_UTR
GGCATTGGACATGAGCAGTA+TGG 0.356871 1:-1643659 MsG0180000115.01.T01:CDS
AAATTTGGTTTACTAGATCT+TGG 0.359025 1:+1643289 None:intergenic
GTCCATAGTTTAGGCTTGTA+TGG 0.363314 1:+1646001 None:intergenic
CTTTATGTACATCTTAGAAT+TGG 0.367311 1:-1646979 MsG0180000115.01.T01:CDS
AATACATCTGTTCTACAATC+AGG 0.368347 1:+1645158 None:intergenic
GACAAAGCATAGGAAGATAT+TGG 0.368369 1:-1643612 MsG0180000115.01.T01:CDS
CAAGCAATGTGAACATGCTT+TGG 0.368637 1:-1645426 MsG0180000115.01.T01:CDS
TTTGTAGAGGATTTCCTGTT+TGG 0.373160 1:-1646835 MsG0180000115.01.T01:intron
TTATTAAGGGAACCTAAATA+TGG 0.374123 1:-1645476 MsG0180000115.01.T01:intron
TGCTAATCTAAATATGACTA+TGG 0.380302 1:-1646125 MsG0180000115.01.T01:CDS
AACCATACAAGCCTAAACTA+TGG 0.383390 1:-1646003 MsG0180000115.01.T01:CDS
AGGAATTAGGAGGGAATCCT+TGG 0.385796 1:-1643345 MsG0180000115.01.T01:CDS
AGCAAACTATCATTCGAATT+CGG 0.392194 1:-1645243 MsG0180000115.01.T01:CDS
ACAATCAGGGAGGATACTTA+TGG 0.396888 1:+1645172 None:intergenic
GATTAGGTACAGGTGTCCCT+TGG 0.398070 1:-1646339 MsG0180000115.01.T01:CDS
ATCAGTTTCAGAACAGATAA+TGG 0.399070 1:-1646794 MsG0180000115.01.T01:CDS
GCAATTCTAAGTTGTTATCA+TGG 0.405026 1:-1644989 MsG0180000115.01.T01:CDS
CATGCAATTATTTAGTTGGT+TGG 0.405645 1:-1642971 MsG0180000115.01.T01:three_prime_UTR
CTCCAAGTGCTCTTCCTTGT+GGG 0.408569 1:+1646407 None:intergenic
GTATGGGAAAGGGTCAAGTA+TGG 0.409540 1:-1643642 MsG0180000115.01.T01:CDS
CAAGAGTGACATTCAACAAT+AGG 0.413587 1:-1645217 MsG0180000115.01.T01:CDS
ACTACCATCAAGTTGTTTGT+TGG 0.414792 1:+1643373 None:intergenic
AAAACCAGCCACAGTTGAAA+TGG 0.423005 1:-1643839 MsG0180000115.01.T01:CDS
CAGAGATGAGGATTCTCCTT+TGG 0.426691 1:+1647400 None:intergenic
ACTCTATTATCTTAACTAGA+AGG 0.427867 1:+1646098 None:intergenic
TATTGGATGGTTTATGCAAA+GGG 0.430224 1:-1643595 MsG0180000115.01.T01:CDS
GTTTGTGCTGAGTGGAACTT+TGG 0.434468 1:-1646949 MsG0180000115.01.T01:CDS
CAAGACTCGGTCCATAGTTT+AGG 0.435962 1:+1645992 None:intergenic
ATGGAGTCTCATCTGTTGAT+TGG 0.444222 1:-1643884 MsG0180000115.01.T01:CDS
ATATATATCTGCATAATTGT+TGG 0.444889 1:-1642933 MsG0180000115.01.T01:three_prime_UTR
GGCACTATGACCTGCCTCCT+TGG 0.447303 1:-1645196 MsG0180000115.01.T01:CDS
TGTGCCATTTCAACTGTGGC+TGG 0.453005 1:+1643835 None:intergenic
CTGTCAAATCCTTCTGTCCA+TGG 0.453029 1:+1644084 None:intergenic
ATTGCTTGATAGCTTTATGA+AGG 0.461553 1:+1645441 None:intergenic
CGAAGATACATCTTCATCAT+AGG 0.461768 1:+1644962 None:intergenic
GCACTTCTTAGTGTAGCTGT+TGG 0.465181 1:-1644259 MsG0180000115.01.T01:CDS
GGAACATACTTCAACCAAAC+AGG 0.465558 1:+1646821 None:intergenic
AGCATTAGTGTGCATTCCTC+TGG 0.470893 1:-1644617 MsG0180000115.01.T01:CDS
AAAACCAACAAACAACTTGA+TGG 0.473330 1:-1643377 MsG0180000115.01.T01:CDS
ATTAGGTACAGGTGTCCCTT+GGG 0.473811 1:-1646338 MsG0180000115.01.T01:CDS
CCTCCATTGTAGAAAAGCTA+TGG 0.474259 1:-1647538 MsG0180000115.01.T01:exon
GCCAATGGTTCAACTCCGTC+AGG 0.475363 1:+1643679 None:intergenic
AGAAAAGCTATTATCATCAA+TGG 0.476920 1:-1647423 MsG0180000115.01.T01:CDS
AATAGTAATCAACCAGAAGA+AGG 0.477075 1:-1642903 MsG0180000115.01.T01:three_prime_UTR
GAATAGTAACAGAAGAAGCT+TGG 0.477596 1:+1647500 None:intergenic
AATGTTCATGAACCTTCTCC+TGG 0.479007 1:-1647186 MsG0180000115.01.T01:CDS
ATCATTAGGAGCATATGAAC+AGG 0.480489 1:-1645381 MsG0180000115.01.T01:intron
GAATCCTTGGAGAATATCTC+TGG 0.481864 1:-1643332 MsG0180000115.01.T01:CDS
GAATTCTATATAGTTTCCAT+TGG 0.484396 1:-1643161 MsG0180000115.01.T01:three_prime_UTR
GCTCCAAGTGCTCTTCCTTG+TGG 0.484823 1:+1646406 None:intergenic
TTCCAGAATAGTACATTGCC+AGG 0.487352 1:+1647168 None:intergenic
TGAGTGTCAATGTATTTACT+TGG 0.487738 1:-1643077 MsG0180000115.01.T01:three_prime_UTR
AAGAAGCTTGGAAACTGAGT+TGG 0.489457 1:+1647512 None:intergenic
GAATAAATTAATAATGAACT+TGG 0.491095 1:+1643108 None:intergenic
CAAAGGAGAATCCTCATCTC+TGG 0.492293 1:-1647399 MsG0180000115.01.T01:CDS
GCTAACTCACCACTGGATCT+GGG 0.494475 1:+1646293 None:intergenic
GCGAAATGCCAAGTTGGTTG+TGG 0.495089 1:-1643532 MsG0180000115.01.T01:CDS
CTAAACTATGGACCGAGTCT+TGG 0.496222 1:-1645991 MsG0180000115.01.T01:CDS
TGGAGTCTCATCTGTTGATT+GGG 0.497847 1:-1643883 MsG0180000115.01.T01:CDS
CGGAGTTGAACCATTGGCAT+TGG 0.499908 1:-1643674 MsG0180000115.01.T01:CDS
CATGGACAGAAGGATTTGAC+AGG 0.501539 1:-1644083 MsG0180000115.01.T01:CDS
TTCCACTCAGCACAAACATA+AGG 0.505669 1:+1646955 None:intergenic
TGCAATTCTTGCAACTATGC+CGG 0.505723 1:-1643568 MsG0180000115.01.T01:CDS
ACACAAACAGGTTGGCCTAA+AGG 0.509211 1:-1643934 MsG0180000115.01.T01:intron
GTTCCAGCACGTAGGTCGAT+AGG 0.511189 1:+1644292 None:intergenic
CTGATTCAGAAAGCAAAAGA+TGG 0.512055 1:-1647243 MsG0180000115.01.T01:CDS
GCTGTCCATGTGTTTATCAA+TGG 0.515626 1:-1644590 MsG0180000115.01.T01:CDS
ACAAACAGGTTGGCCTAAAG+GGG 0.515899 1:-1643932 MsG0180000115.01.T01:intron
GTTCTGTTATCTCTGTGAGT+GGG 0.516616 1:+1647656 None:intergenic
TTTGTGCTGAGTGGAACTTT+GGG 0.518987 1:-1646948 MsG0180000115.01.T01:intron
TACTTATGGACCAAGGAGGC+AGG 0.519030 1:+1645186 None:intergenic
GGCCCTATCGACCTACGTGC+TGG 0.519091 1:-1644295 MsG0180000115.01.T01:CDS
TTTGGTTGAAGTATGTTCCT+GGG 0.520726 1:-1646817 MsG0180000115.01.T01:CDS
GGTACCATGTTCCAAGGTCC+TGG 0.521759 1:-1643402 MsG0180000115.01.T01:CDS
CATTGCAAGCATTTATCTGT+AGG 0.522414 1:+1646056 None:intergenic
ACCTAAATATGGTCATTTGA+AGG 0.525989 1:-1645465 MsG0180000115.01.T01:CDS
CAGAATCATTTCTTCGTGGA+AGG 0.526155 1:-1644649 MsG0180000115.01.T01:CDS
AAGGGTCAAGTATGGATCAA+TGG 0.526204 1:-1643634 MsG0180000115.01.T01:CDS
GGCCCACAAGGAAGAGCACT+TGG 0.526726 1:-1646409 MsG0180000115.01.T01:CDS
ATGAATTTGGTGTCTCCCAA+TGG 0.527375 1:-1643903 MsG0180000115.01.T01:CDS
TGTCCCTTGGGTGATGTGTA+AGG 0.528527 1:-1646326 MsG0180000115.01.T01:CDS
GGTGCTTCTTGGATAATGAA+TGG 0.528944 1:+1647374 None:intergenic
CTGTCCATGTGTTTATCAAT+GGG 0.530690 1:-1644589 MsG0180000115.01.T01:CDS
CTATGCCGGAACTTATCGTC+AGG 0.531405 1:-1643554 MsG0180000115.01.T01:CDS
CAATTCTAAGTTGTTATCAT+GGG 0.532316 1:-1644988 MsG0180000115.01.T01:CDS
TTTCGCCTGACGATAAGTTC+CGG 0.532860 1:+1643549 None:intergenic
ATGGCTGTTGGATTAGGTAC+AGG 0.534625 1:-1646349 MsG0180000115.01.T01:CDS
CTACAGATAAATGCTTGCAA+TGG 0.542639 1:-1646055 MsG0180000115.01.T01:CDS
TGTTCTGTTATCTCTGTGAG+TGG 0.542965 1:+1647655 None:intergenic
AATTAGTACCATCTTTGAGT+AGG 0.543526 1:+1643505 None:intergenic
GGACATGAGCAGTATGGGAA+AGG 0.544160 1:-1643653 MsG0180000115.01.T01:CDS
GCATTGGACATGAGCAGTAT+GGG 0.544484 1:-1643658 MsG0180000115.01.T01:CDS
TCATGGAAGTCAGGAATCAC+AGG 0.550670 1:-1644131 MsG0180000115.01.T01:CDS
ATCAACAGATGAGACTCCAT+TGG 0.551457 1:+1643887 None:intergenic
GGAGAATATCTCTGGTAAAG+AGG 0.551993 1:-1643324 MsG0180000115.01.T01:CDS
GAGGAATGCACACTAATGCT+TGG 0.552794 1:+1644620 None:intergenic
AATAGTACATTGCCAGGAGA+AGG 0.552818 1:+1647174 None:intergenic
GGACCGAGTCTTGGAGTGGT+TGG 0.556567 1:-1645982 MsG0180000115.01.T01:intron
CGTCAGGCGAAATGCCAAGT+TGG 0.557079 1:-1643538 MsG0180000115.01.T01:CDS
TCAACAGATGAGACTCCATT+GGG 0.557160 1:+1643888 None:intergenic
TGGTCTTGACCATGGACAGA+AGG 0.557257 1:-1644093 MsG0180000115.01.T01:CDS
ATATTGGATGGTTTATGCAA+AGG 0.557748 1:-1643596 MsG0180000115.01.T01:CDS
GTTTGCTAGAAAAGCTGCAC+AGG 0.559158 1:+1645259 None:intergenic
TAGGTTGTCCACAACCAACT+TGG 0.560379 1:+1643524 None:intergenic
TTCCAGCACGTAGGTCGATA+GGG 0.563878 1:+1644293 None:intergenic
TATCAATCATGCTATGCCAA+TGG 0.564435 1:+1643145 None:intergenic
ATAGTAATCAACCAGAAGAA+GGG 0.567472 1:-1642902 MsG0180000115.01.T01:three_prime_UTR
TCATCAGAATCATTTCTTCG+TGG 0.567472 1:-1644653 MsG0180000115.01.T01:CDS
GACATGAGCAGTATGGGAAA+GGG 0.570823 1:-1643652 MsG0180000115.01.T01:CDS
TTGCTTCATGGTCTTGACCA+TGG 0.573358 1:-1644101 MsG0180000115.01.T01:CDS
TTTGCAGGTACCATGTTCCA+AGG 0.574539 1:-1643408 MsG0180000115.01.T01:intron
GAAAGCAAAAGATGGAGGGT+TGG 0.574643 1:-1647235 MsG0180000115.01.T01:CDS
TTAGAAGGCTAACTCACCAC+TGG 0.575857 1:+1646286 None:intergenic
GATAACAACTTAGAATTGCT+AGG 0.576031 1:+1644993 None:intergenic
ATTATTAACAACATTGTCGT+AGG 0.577085 1:-1647710 MsG0180000115.01.T01:five_prime_UTR
TTTACCAGAGATATTCTCCA+AGG 0.578589 1:+1643328 None:intergenic
ATACATCTGTTCTACAATCA+GGG 0.581066 1:+1645159 None:intergenic
ACCTGACGGAGTTGAACCAT+TGG 0.585293 1:-1643680 MsG0180000115.01.T01:CDS
CAGTGAGTTTGGCTGAATCA+CGG 0.587337 1:+1646146 None:intergenic
ACCTTGTGCCATTTCAACTG+TGG 0.587399 1:+1643831 None:intergenic
CTGCTCATGTCCAATGCCAA+TGG 0.594494 1:+1643664 None:intergenic
TCTGTTCTGAAACTGATCCC+AGG 0.600350 1:+1646800 None:intergenic
TGGATCAATGGACAAAGCAT+AGG 0.604928 1:-1643622 MsG0180000115.01.T01:CDS
TTAACCAGGACCTTGGAACA+TGG 0.606779 1:+1643398 None:intergenic
GCTCCTAATGATGTAACAGT+AGG 0.606807 1:+1645392 None:intergenic
TTACCAACCACTCCAAGACT+CGG 0.608327 1:+1645979 None:intergenic
AAGCATAGGAAGATATTGGA+TGG 0.609264 1:-1643608 MsG0180000115.01.T01:CDS
GTGGACAACCTACTCAAAGA+TGG 0.609971 1:-1643513 MsG0180000115.01.T01:intron
GAGAATGAGTATGGCCCACA+AGG 0.610168 1:-1646421 MsG0180000115.01.T01:CDS
GACCTTATGTTTGTGCTGAG+TGG 0.610645 1:-1646957 MsG0180000115.01.T01:CDS
ATTTCCCATTGATAAACACA+TGG 0.611686 1:+1644585 None:intergenic
TTCAGAAAGCAAAAGATGGA+GGG 0.615815 1:-1647239 MsG0180000115.01.T01:CDS
ATTCAGAAAGCAAAAGATGG+AGG 0.619685 1:-1647240 MsG0180000115.01.T01:CDS
TGGTCATGCATACTCAAACT+GGG 0.624854 1:-1646380 MsG0180000115.01.T01:CDS
ACTATTTATGGTATATAACA+AGG 0.628472 1:-1644869 MsG0180000115.01.T01:intron
TCTTCCTTACACATCACCCA+AGG 0.629739 1:+1646322 None:intergenic
AGATGATGCCCCAGATCCAG+TGG 0.631725 1:-1646302 MsG0180000115.01.T01:CDS
CTAACTCACCACTGGATCTG+GGG 0.639843 1:+1646294 None:intergenic
GCACATTTCAATGCACCTGA+CGG 0.642724 1:-1643694 MsG0180000115.01.T01:CDS
CTATGGACCGAGTCTTGGAG+TGG 0.648237 1:-1645986 MsG0180000115.01.T01:CDS
AATGAATGGAACCAGAGATG+AGG 0.654785 1:+1647388 None:intergenic
CTATTATCATCAATGGCCAA+AGG 0.665404 1:-1647416 MsG0180000115.01.T01:CDS
GAAAAGCTGTTTCAGTCACA+AGG 0.669396 1:-1646620 MsG0180000115.01.T01:CDS
CTTCCTTACACATCACCCAA+GGG 0.670888 1:+1646323 None:intergenic
CAAACAGGTTGGCCTAAAGG+GGG 0.672533 1:-1643931 MsG0180000115.01.T01:intron
TTAATGACTAATACAACACA+AGG 0.674686 1:-1643268 MsG0180000115.01.T01:CDS
TAGTATAGTATATACTTCAG+GGG 0.680900 1:+1647353 None:intergenic
GGGAGGATACTTATGGACCA+AGG 0.681332 1:+1645179 None:intergenic
TGAAGATGTATCTTCGCTAG+CGG 0.687691 1:-1644955 MsG0180000115.01.T01:CDS
CACATGGACAGCATCACCAG+AGG 0.689285 1:+1644601 None:intergenic
GCCACAGTTGAAATGGCACA+AGG 0.694536 1:-1643832 MsG0180000115.01.T01:intron
CATAGCATGATTGATACGAG+AGG 0.704572 1:-1643138 MsG0180000115.01.T01:three_prime_UTR
AAGCTGTTTCAGTCACAAGG+TGG 0.718827 1:-1646617 MsG0180000115.01.T01:CDS
GATTGACATGACATCAAACA+AGG 0.720895 1:-1643228 MsG0180000115.01.T01:three_prime_UTR
ATGGACAGAAGGATTTGACA+GGG 0.731802 1:-1644082 MsG0180000115.01.T01:CDS
GAAATGTGTGTAGATGTGGG+AGG 0.739680 1:-1647268 MsG0180000115.01.T01:intron
CATCTGTTCTACAATCAGGG+AGG 0.741717 1:+1645162 None:intergenic
AGGATACTTATGGACCAAGG+AGG 0.747272 1:+1645182 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAAATATTTTTTTT+AGG - Chr1:1643923-1643942 MsG0180000115.01.T01:CDS 0.0%
!! AAAAAACCTTTAAATTGATT+TGG + Chr1:1645804-1645823 None:intergenic 15.0%
!! AACTTCAAACATTTATTATT+TGG - Chr1:1643699-1643718 MsG0180000115.01.T01:intron 15.0%
!! AACTTTATTCTTCATAATTA+TGG + Chr1:1647413-1647432 None:intergenic 15.0%
!! GAATAAATTAATAATGAACT+TGG + Chr1:1647508-1647527 None:intergenic 15.0%
!! TTACTATAATAACATATTAC+TGG - Chr1:1646826-1646845 MsG0180000115.01.T01:CDS 15.0%
!!! TTCTTTTTTTTTTCATAGAA+TGG - Chr1:1646443-1646462 MsG0180000115.01.T01:intron 15.0%
!! AATAGTATAGTATATACTTC+AGG + Chr1:1643265-1643284 None:intergenic 20.0%
!! AATTACAAATCAACCTTAAA+AGG + Chr1:1643846-1643865 None:intergenic 20.0%
!! AATTATGTATATACACAAAC+AGG - Chr1:1646667-1646686 MsG0180000115.01.T01:CDS 20.0%
!! ACTATTTATGGTATATAACA+AGG - Chr1:1645744-1645763 MsG0180000115.01.T01:intron 20.0%
!! ATAATTCGGTTAAAATTAGT+TGG - Chr1:1646082-1646101 MsG0180000115.01.T01:CDS 20.0%
!! ATAGTATAGTATATACTTCA+GGG + Chr1:1643264-1643283 None:intergenic 20.0%
!! ATATATATCTGCATAATTGT+TGG - Chr1:1647680-1647699 MsG0180000115.01.T01:five_prime_UTR 20.0%
!! ATTTATCTGTAGGAAATAAT+TGG + Chr1:1644550-1644569 None:intergenic 20.0%
!! GCTTCGTTAATTTATTAAAT+AGG - Chr1:1644916-1644935 MsG0180000115.01.T01:CDS 20.0%
!! GTTGTATTAGTCATTAAATT+TGG + Chr1:1647342-1647361 None:intergenic 20.0%
!! TATTCCATTATTTATGAAGT+TGG - Chr1:1644663-1644682 MsG0180000115.01.T01:CDS 20.0%
!! TTCGTTCTTTAATTATTACA+TGG - Chr1:1644852-1644871 MsG0180000115.01.T01:intron 20.0%
!! TTCTTTAATTATTACATGGT+TGG - Chr1:1644856-1644875 MsG0180000115.01.T01:intron 20.0%
!!! GTTTTTTTATTTGTTTGTAG+AGG - Chr1:1643765-1643784 MsG0180000115.01.T01:intron 20.0%
!!! TTATTGATACTTATGTGTTT+TGG - Chr1:1643404-1643423 MsG0180000115.01.T01:CDS 20.0%
!!! TTTTTTTTTTCATAGAATGG+TGG - Chr1:1646446-1646465 MsG0180000115.01.T01:intron 20.0%
!!! TTTTTTTTTTGAAGTGCTAT+TGG - Chr1:1645822-1645841 MsG0180000115.01.T01:intron 20.0%
! AAAAGGAGAAAAGAACAAAA+GGG + Chr1:1644726-1644745 None:intergenic 25.0%
! ACAACCAACTTCATAAATAA+TGG + Chr1:1644670-1644689 None:intergenic 25.0%
! ACTCTATTATCTTAACTAGA+AGG + Chr1:1644518-1644537 None:intergenic 25.0%
! AGAAAAGCTATTATCATCAA+TGG - Chr1:1643190-1643209 MsG0180000115.01.T01:three_prime_UTR 25.0%
! AGGTTTCAAATTAGATTAGA+AGG + Chr1:1646895-1646914 None:intergenic 25.0%
! ATCTAACCATATTCATCAAT+TGG + Chr1:1645045-1645064 None:intergenic 25.0%
! ATTATTAACAACATTGTCGT+AGG - Chr1:1642903-1642922 MsG0180000115.01.T01:three_prime_UTR 25.0%
! CAATTCTAAGTTGTTATCAT+GGG - Chr1:1645625-1645644 MsG0180000115.01.T01:intron 25.0%
! CATAAAATGTATCTTAGACT+CGG - Chr1:1646187-1646206 MsG0180000115.01.T01:intron 25.0%
! CTTACTTGAGAAAGAATTAT+TGG + Chr1:1644023-1644042 None:intergenic 25.0%
! CTTTATGTACATCTTAGAAT+TGG - Chr1:1643634-1643653 MsG0180000115.01.T01:CDS 25.0%
! GAATTCTATATAGTTTCCAT+TGG - Chr1:1647452-1647471 MsG0180000115.01.T01:CDS 25.0%
! TAAACCAAGATGAGATAATT+CGG - Chr1:1646068-1646087 MsG0180000115.01.T01:CDS 25.0%
! TACTCATGCAATTATTTAGT+TGG - Chr1:1647638-1647657 MsG0180000115.01.T01:five_prime_UTR 25.0%
! TAGCAACCAAATCAATTTAA+AGG - Chr1:1645795-1645814 MsG0180000115.01.T01:intron 25.0%
! TAGTATAGTATATACTTCAG+GGG + Chr1:1643263-1643282 None:intergenic 25.0%
! TCTTTATTCCTCTAACATAA+CGG - Chr1:1645261-1645280 MsG0180000115.01.T01:CDS 25.0%
! TGCTAATCTAAATATGACTA+TGG - Chr1:1644488-1644507 MsG0180000115.01.T01:intron 25.0%
! TGCTATATTACTATTGCATA+AGG - Chr1:1646630-1646649 MsG0180000115.01.T01:CDS 25.0%
! TTAACTGAGAAAAAAGAACT+AGG + Chr1:1644885-1644904 None:intergenic 25.0%
! TTAATGACTAATACAACACA+AGG - Chr1:1647345-1647364 MsG0180000115.01.T01:intron 25.0%
! TTATTAAGGGAACCTAAATA+TGG - Chr1:1645137-1645156 MsG0180000115.01.T01:intron 25.0%
!! AAATTTGGTTTACTAGATCT+TGG + Chr1:1647327-1647346 None:intergenic 25.0%
!! ACTTATTACTTCAATTTTGC+AGG - Chr1:1647190-1647209 MsG0180000115.01.T01:CDS 25.0%
!! AGTTGAAATCTTACTGTTTT+TGG - Chr1:1645909-1645928 MsG0180000115.01.T01:intron 25.0%
!! TAATCTAATTTGAAACCTTC+AGG - Chr1:1646897-1646916 MsG0180000115.01.T01:intron 25.0%
!! TTTATCAATGGGAAATTTTC+AGG - Chr1:1646035-1646054 MsG0180000115.01.T01:CDS 25.0%
!!! AACTGATTTCAGGTTTATTA+AGG - Chr1:1645123-1645142 MsG0180000115.01.T01:intron 25.0%
!!! ACTGATTTCAGGTTTATTAA+GGG - Chr1:1645124-1645143 MsG0180000115.01.T01:intron 25.0%
!!! GTTGAAATCTTACTGTTTTT+GGG - Chr1:1645910-1645929 MsG0180000115.01.T01:intron 25.0%
!!! GTTTTTTATATATGCAGATG+TGG - Chr1:1647430-1647449 MsG0180000115.01.T01:CDS 25.0%
!!! TTGCTATTTGTAAATCTAGA+GGG + Chr1:1645781-1645800 None:intergenic 25.0%
AAAACCAACAAACAACTTGA+TGG - Chr1:1647236-1647255 MsG0180000115.01.T01:CDS 30.0%
AACATCACTTCCTTATCTTT+AGG - Chr1:1647152-1647171 MsG0180000115.01.T01:intron 30.0%
AATACATCTGTTCTACAATC+AGG + Chr1:1645458-1645477 None:intergenic 30.0%
AATAGTAATCAACCAGAAGA+AGG - Chr1:1647710-1647729 MsG0180000115.01.T01:five_prime_UTR 30.0%
AATGACAAATGATAGTACCA+TGG - Chr1:1644955-1644974 MsG0180000115.01.T01:CDS 30.0%
AATTAGTACCATCTTTGAGT+AGG + Chr1:1647111-1647130 None:intergenic 30.0%
ACCTAAATATGGTCATTTGA+AGG - Chr1:1645148-1645167 MsG0180000115.01.T01:CDS 30.0%
ACTGCAAGAGTAAGAATAAA+AGG - Chr1:1645482-1645501 MsG0180000115.01.T01:intron 30.0%
AGAGATGATAAAGTTCAAGT+TGG + Chr1:1646408-1646427 None:intergenic 30.0%
AGCAAACTATCATTCGAATT+CGG - Chr1:1645370-1645389 MsG0180000115.01.T01:intron 30.0%
ATACATCTGTTCTACAATCA+GGG + Chr1:1645457-1645476 None:intergenic 30.0%
ATAGTAATCAACCAGAAGAA+GGG - Chr1:1647711-1647730 MsG0180000115.01.T01:five_prime_UTR 30.0%
ATATTGGATGGTTTATGCAA+AGG - Chr1:1647017-1647036 MsG0180000115.01.T01:CDS 30.0%
ATCAGTTTCAGAACAGATAA+TGG - Chr1:1643819-1643838 MsG0180000115.01.T01:intron 30.0%
ATGTATATACACAAACAGGT+TGG - Chr1:1646671-1646690 MsG0180000115.01.T01:CDS 30.0%
ATTAAGACAGTGCAGAAAAA+AGG - Chr1:1643610-1643629 MsG0180000115.01.T01:CDS 30.0%
ATTTAGATTAGCAGTGAGTT+TGG + Chr1:1644481-1644500 None:intergenic 30.0%
ATTTCCCATTGATAAACACA+TGG + Chr1:1646031-1646050 None:intergenic 30.0%
CACAAGGTAAGAAAAATTAC+TGG - Chr1:1646797-1646816 MsG0180000115.01.T01:CDS 30.0%
CATGCAATTATTTAGTTGGT+TGG - Chr1:1647642-1647661 MsG0180000115.01.T01:five_prime_UTR 30.0%
CTGCAAGAGTAAGAATAAAA+GGG - Chr1:1645483-1645502 MsG0180000115.01.T01:intron 30.0%
GAAAAGGAGAAAAGAACAAA+AGG + Chr1:1644727-1644746 None:intergenic 30.0%
GACAGAAGTTTCACATTTAA+CGG - Chr1:1646297-1646316 MsG0180000115.01.T01:intron 30.0%
GATAACAACTTAGAATTGCT+AGG + Chr1:1645623-1645642 None:intergenic 30.0%
GCAATTCTAAGTTGTTATCA+TGG - Chr1:1645624-1645643 MsG0180000115.01.T01:intron 30.0%
GTAATAAGCAAGATACTAAC+AGG + Chr1:1646384-1646403 None:intergenic 30.0%
TACCAAATATGCACTAAATC+AGG + Chr1:1644361-1644380 None:intergenic 30.0%
TATTGGATGGTTTATGCAAA+GGG - Chr1:1647018-1647037 MsG0180000115.01.T01:CDS 30.0%
TCCTTCAAATGACCATATTT+AGG + Chr1:1645152-1645171 None:intergenic 30.0%
TCGTTAAATAGTTGCTATAG+CGG - Chr1:1646607-1646626 MsG0180000115.01.T01:CDS 30.0%
TGAGTGTCAATGTATTTACT+TGG - Chr1:1647536-1647555 MsG0180000115.01.T01:exon 30.0%
TTAACCGAATTATCTCATCT+TGG + Chr1:1646075-1646094 None:intergenic 30.0%
TTAGGCTTGTATGGTTTATT+GGG + Chr1:1644606-1644625 None:intergenic 30.0%
TTAGTGCATATTTGGTATGA+CGG - Chr1:1644364-1644383 MsG0180000115.01.T01:intron 30.0%
TTCTTCTCTATCTTCTTTCT+TGG - Chr1:1643133-1643152 MsG0180000115.01.T01:three_prime_UTR 30.0%
TTGTAGATTGAGAATGAGTA+TGG - Chr1:1644183-1644202 MsG0180000115.01.T01:intron 30.0%
TTTAGGCTTGTATGGTTTAT+TGG + Chr1:1644607-1644626 None:intergenic 30.0%
TTTAGGTAGTAGATAGAAGT+TGG - Chr1:1646112-1646131 MsG0180000115.01.T01:CDS 30.0%
! AACTTTTGCTAAAATCACAG+TGG - Chr1:1644440-1644459 MsG0180000115.01.T01:intron 30.0%
! ACTTGCTAATGAGACAATTT+AGG + Chr1:1645088-1645107 None:intergenic 30.0%
! GTAGCATTTTCCTAAAGATA+AGG + Chr1:1647165-1647184 None:intergenic 30.0%
! GTTATGTTTTCATGAAGATG+AGG - Chr1:1645570-1645589 MsG0180000115.01.T01:intron 30.0%
! TCATAGCTTGTAGTTATGAA+TGG + Chr1:1645012-1645031 None:intergenic 30.0%
! TTTCCATAGCTTTTCTACAA+TGG + Chr1:1643081-1643100 None:intergenic 30.0%
! TTTGAAATGTGTGTAGATGT+GGG - Chr1:1643342-1643361 MsG0180000115.01.T01:CDS 30.0%
!! AACAGATAATGGTCCTTTTA+AGG - Chr1:1643830-1643849 MsG0180000115.01.T01:intron 30.0%
!! ATGGTAGTTTTTGAGGAATT+AGG - Chr1:1647255-1647274 MsG0180000115.01.T01:CDS 30.0%
!! ATTGCTTGATAGCTTTATGA+AGG + Chr1:1645175-1645194 None:intergenic 30.0%
!! GTTGCTATTTGTAAATCTAG+AGG + Chr1:1645782-1645801 None:intergenic 30.0%
!! TAGTTTTTGAGGAATTAGGA+GGG - Chr1:1647259-1647278 MsG0180000115.01.T01:intron 30.0%
AAAGCAAGGAAAAAGCTAGA+TGG + Chr1:1645876-1645895 None:intergenic 35.0%
AACCATACAAGCCTAAACTA+TGG - Chr1:1644610-1644629 MsG0180000115.01.T01:CDS 35.0%
AAGCATAGGAAGATATTGGA+TGG - Chr1:1647005-1647024 MsG0180000115.01.T01:CDS 35.0%
ATTCAGAAAGCAAAAGATGG+AGG - Chr1:1643373-1643392 MsG0180000115.01.T01:CDS 35.0%
CAAGAGTGACATTCAACAAT+AGG - Chr1:1645396-1645415 MsG0180000115.01.T01:CDS 35.0%
CACAAGGATGAGAACAAAAA+TGG - Chr1:1647361-1647380 MsG0180000115.01.T01:intron 35.0%
CATTGCAAGCATTTATCTGT+AGG + Chr1:1644560-1644579 None:intergenic 35.0%
CGAAGATACATCTTCATCAT+AGG + Chr1:1645654-1645673 None:intergenic 35.0%
CTACAGATAAATGCTTGCAA+TGG - Chr1:1644558-1644577 MsG0180000115.01.T01:intron 35.0%
CTATTATCATCAATGGCCAA+AGG - Chr1:1643197-1643216 MsG0180000115.01.T01:three_prime_UTR 35.0%
CTGACTTCCATGATTCAAAA+TGG + Chr1:1646475-1646494 None:intergenic 35.0%
CTGATTCAGAAAGCAAAAGA+TGG - Chr1:1643370-1643389 MsG0180000115.01.T01:CDS 35.0%
CTGTCCATGTGTTTATCAAT+GGG - Chr1:1646024-1646043 MsG0180000115.01.T01:CDS 35.0%
GAATAGTAACAGAAGAAGCT+TGG + Chr1:1643116-1643135 None:intergenic 35.0%
GACAAAGCATAGGAAGATAT+TGG - Chr1:1647001-1647020 MsG0180000115.01.T01:CDS 35.0%
GAGACACTAGTGACTATTTA+TGG - Chr1:1645732-1645751 MsG0180000115.01.T01:intron 35.0%
GATCCTACTGTTACATCATT+AGG - Chr1:1645218-1645237 MsG0180000115.01.T01:CDS 35.0%
GATGCTCCAATTGATGAATA+TGG - Chr1:1645036-1645055 MsG0180000115.01.T01:intron 35.0%
GATTGACATGACATCAAACA+AGG - Chr1:1647385-1647404 MsG0180000115.01.T01:CDS 35.0%
TAACAATGATCTATGTCTCC+AGG - Chr1:1645307-1645326 MsG0180000115.01.T01:intron 35.0%
TACCATGGAGGAACTAATTT+CGG - Chr1:1644970-1644989 MsG0180000115.01.T01:CDS 35.0%
TAGAATTGCTAGGCAACATT+TGG + Chr1:1645613-1645632 None:intergenic 35.0%
TATCAATCATGCTATGCCAA+TGG + Chr1:1647471-1647490 None:intergenic 35.0%
TCAAGACCATGAAGCAAAAT+TGG + Chr1:1646509-1646528 None:intergenic 35.0%
TCATCAGAATCATTTCTTCG+TGG - Chr1:1645960-1645979 MsG0180000115.01.T01:intron 35.0%
TGAAAACCTGATGACCAAAT+GGG + Chr1:1644755-1644774 None:intergenic 35.0%
TGCCTGATTTAGTGCATATT+TGG - Chr1:1644356-1644375 MsG0180000115.01.T01:intron 35.0%
TGTGAAAGATCAAGAAAGAG+TGG - Chr1:1644115-1644134 MsG0180000115.01.T01:CDS 35.0%
TTCAGAAAGCAAAAGATGGA+GGG - Chr1:1643374-1643393 MsG0180000115.01.T01:CDS 35.0%
TTTACCAGAGATATTCTCCA+AGG + Chr1:1647288-1647307 None:intergenic 35.0%
TTTGGTTGAAGTATGTTCCT+GGG - Chr1:1643796-1643815 MsG0180000115.01.T01:intron 35.0%
TTTGTAGAGGATTTCCTGTT+TGG - Chr1:1643778-1643797 MsG0180000115.01.T01:intron 35.0%
! AACCACCCTTTTGTATGAAA+CGG + Chr1:1644834-1644853 None:intergenic 35.0%
! ACTACCATCAAGTTGTTTGT+TGG + Chr1:1647243-1647262 None:intergenic 35.0%
! AGATTCCTATTTCCTTTTGC+AGG - Chr1:1646252-1646271 MsG0180000115.01.T01:intron 35.0%
! ATCAGGTTTTCAGAATTTGG+TGG - Chr1:1644763-1644782 MsG0180000115.01.T01:intron 35.0%
! ATCATTAGGAGCATATGAAC+AGG - Chr1:1645232-1645251 MsG0180000115.01.T01:CDS 35.0%
! CATAGCTTTTCTACAATGGA+GGG + Chr1:1643077-1643096 None:intergenic 35.0%
! CATTTTGAATCATGGAAGTC+AGG - Chr1:1646473-1646492 MsG0180000115.01.T01:intron 35.0%
! GAAGTTGGTTGTGAAAACAA+TGG - Chr1:1644678-1644697 MsG0180000115.01.T01:intron 35.0%
! GTCATCAGGTTTTCAGAATT+TGG - Chr1:1644760-1644779 MsG0180000115.01.T01:intron 35.0%
! GTGGAATCCATTTTGAATCA+TGG - Chr1:1646465-1646484 MsG0180000115.01.T01:intron 35.0%
! GTGTTGCAGTACAATTTTGA+AGG - Chr1:1643565-1643584 MsG0180000115.01.T01:CDS 35.0%
! GTTTGAAATGTGTGTAGATG+TGG - Chr1:1643341-1643360 MsG0180000115.01.T01:CDS 35.0%
! TGATTTTGCCGTTATGTTAG+AGG + Chr1:1645272-1645291 None:intergenic 35.0%
! TTGAGTGCTTAACTGATTTC+AGG - Chr1:1645113-1645132 MsG0180000115.01.T01:intron 35.0%
! TTTTATTAGTTCCAGCACGT+AGG + Chr1:1646332-1646351 None:intergenic 35.0%
!! CAACTTGATGGTAGTTTTTG+AGG - Chr1:1647248-1647267 MsG0180000115.01.T01:CDS 35.0%
!! CAATGTACTATTCTGGAATC+TGG - Chr1:1643450-1643469 MsG0180000115.01.T01:intron 35.0%
!! GTAGTTTTTGAGGAATTAGG+AGG - Chr1:1647258-1647277 MsG0180000115.01.T01:CDS 35.0%
!! TGCAGTACAATTTTGAAGGA+AGG - Chr1:1643569-1643588 MsG0180000115.01.T01:CDS 35.0%
!! TGGAGGGAAAGTTTTTGAAA+TGG + Chr1:1643061-1643080 None:intergenic 35.0%
!!! AATTAGTTGGCGTTGGTTTT+AGG - Chr1:1646095-1646114 MsG0180000115.01.T01:CDS 35.0%
!!! GTTGTTTGTTGGTTTTAACC+AGG + Chr1:1647232-1647251 None:intergenic 35.0%
!!! TTTTTTTAGGCTGCAATGCA+AGG - Chr1:1643936-1643955 MsG0180000115.01.T01:intron 35.0%
AAAACCAGCCACAGTTGAAA+TGG - Chr1:1646774-1646793 MsG0180000115.01.T01:intron 40.0%
AAGAAGCTTGGAAACTGAGT+TGG + Chr1:1643104-1643123 None:intergenic 40.0%
AAGGGTCAAGTATGGATCAA+TGG - Chr1:1646979-1646998 MsG0180000115.01.T01:CDS 40.0%
AATAGTACATTGCCAGGAGA+AGG + Chr1:1643442-1643461 None:intergenic 40.0%
AATGAATGGAACCAGAGATG+AGG + Chr1:1643228-1643247 None:intergenic 40.0%
AATGTTCATGAACCTTCTCC+TGG - Chr1:1643427-1643446 MsG0180000115.01.T01:intron 40.0%
ACAATCAGGGAGGATACTTA+TGG + Chr1:1645444-1645463 None:intergenic 40.0%
AGGAACTAATTTCGGACGAT+CGG - Chr1:1644978-1644997 MsG0180000115.01.T01:CDS 40.0%
AGGATTTGACAGGGCAAAAA+TGG - Chr1:1646540-1646559 MsG0180000115.01.T01:intron 40.0%
AGTTGCCCGTTTCATACAAA+AGG - Chr1:1644825-1644844 MsG0180000115.01.T01:intron 40.0%
ATCAACAGATGAGACTCCAT+TGG + Chr1:1646729-1646748 None:intergenic 40.0%
ATGGACAGAAGGATTTGACA+GGG - Chr1:1646531-1646550 MsG0180000115.01.T01:intron 40.0%
ATGGAGTCTCATCTGTTGAT+TGG - Chr1:1646729-1646748 MsG0180000115.01.T01:intron 40.0%
CAAGCAATGTGAACATGCTT+TGG - Chr1:1645187-1645206 MsG0180000115.01.T01:CDS 40.0%
CAGAATCATTTCTTCGTGGA+AGG - Chr1:1645964-1645983 MsG0180000115.01.T01:intron 40.0%
CATAGCATGATTGATACGAG+AGG - Chr1:1647475-1647494 MsG0180000115.01.T01:CDS 40.0%
CCTCCATTGTAGAAAAGCTA+TGG - Chr1:1643075-1643094 MsG0180000115.01.T01:three_prime_UTR 40.0%
CGGTTAAAATTAGTTGGCGT+TGG - Chr1:1646088-1646107 MsG0180000115.01.T01:CDS 40.0%
CTGAAAACCTGATGACCAAA+TGG + Chr1:1644756-1644775 None:intergenic 40.0%
CTTGATCTTTCACAACATGC+AGG + Chr1:1644109-1644128 None:intergenic 40.0%
GAATCCTTGGAGAATATCTC+TGG - Chr1:1647281-1647300 MsG0180000115.01.T01:intron 40.0%
GACAAATGATAGTACCATGG+AGG - Chr1:1644958-1644977 MsG0180000115.01.T01:CDS 40.0%
GACCAAATGGGAATAGGAAA+AGG + Chr1:1644743-1644762 None:intergenic 40.0%
GCAAAAATGGCTGTTGGATT+AGG - Chr1:1644258-1644277 MsG0180000115.01.T01:CDS 40.0%
GCTCCTAATGATGTAACAGT+AGG + Chr1:1645224-1645243 None:intergenic 40.0%
GCTGTCCATGTGTTTATCAA+TGG - Chr1:1646023-1646042 MsG0180000115.01.T01:CDS 40.0%
GGAACATACTTCAACCAAAC+AGG + Chr1:1643795-1643814 None:intergenic 40.0%
GGAGAATATCTCTGGTAAAG+AGG - Chr1:1647289-1647308 MsG0180000115.01.T01:intron 40.0%
GGTGCTTCTTGGATAATGAA+TGG + Chr1:1643242-1643261 None:intergenic 40.0%
GTCCATAGTTTAGGCTTGTA+TGG + Chr1:1644615-1644634 None:intergenic 40.0%
GTTCTGTTATCTCTGTGAGT+GGG + Chr1:1642960-1642979 None:intergenic 40.0%
GTTGCCCGTTTCATACAAAA+GGG - Chr1:1644826-1644845 MsG0180000115.01.T01:intron 40.0%
GTTTGGTTGAAGTATGTTCC+TGG - Chr1:1643795-1643814 MsG0180000115.01.T01:intron 40.0%
TCAACAGATGAGACTCCATT+GGG + Chr1:1646728-1646747 None:intergenic 40.0%
TGAAGATGTATCTTCGCTAG+CGG - Chr1:1645658-1645677 MsG0180000115.01.T01:intron 40.0%
TGCAATTCTTGCAACTATGC+CGG - Chr1:1647045-1647064 MsG0180000115.01.T01:intron 40.0%
TGCATAGAACTGAGAAAGCA+AGG + Chr1:1645890-1645909 None:intergenic 40.0%
TGGATCAATGGACAAAGCAT+AGG - Chr1:1646991-1647010 MsG0180000115.01.T01:CDS 40.0%
TGGTCATGCATACTCAAACT+GGG - Chr1:1644233-1644252 MsG0180000115.01.T01:intron 40.0%
TGTTCTGTTATCTCTGTGAG+TGG + Chr1:1642961-1642980 None:intergenic 40.0%
TTCCACTCAGCACAAACATA+AGG + Chr1:1643661-1643680 None:intergenic 40.0%
TTCCAGAATAGTACATTGCC+AGG + Chr1:1643448-1643467 None:intergenic 40.0%
TTTGTGCTGAGTGGAACTTT+GGG - Chr1:1643665-1643684 MsG0180000115.01.T01:CDS 40.0%
! ACAGGTCCAATTTTGCTTCA+TGG - Chr1:1646500-1646519 MsG0180000115.01.T01:intron 40.0%
! ACCACCCTTTTGTATGAAAC+GGG + Chr1:1644833-1644852 None:intergenic 40.0%
! CCATAGCTTTTCTACAATGG+AGG + Chr1:1643078-1643097 None:intergenic 40.0%
! CTCCTTTTCCTATTCCCATT+TGG - Chr1:1644738-1644757 MsG0180000115.01.T01:intron 40.0%
! GAAAAGCTGTTTCAGTCACA+AGG - Chr1:1643993-1644012 MsG0180000115.01.T01:intron 40.0%
! TGGAGTCTCATCTGTTGATT+GGG - Chr1:1646730-1646749 MsG0180000115.01.T01:intron 40.0%
!! AATCAGGCAAGAGCATTAGA+AGG + Chr1:1644345-1644364 None:intergenic 40.0%
!! ATGAATTTGGTGTCTCCCAA+TGG - Chr1:1646710-1646729 MsG0180000115.01.T01:intron 40.0%
AAAGGGGGAGGCTATGAATT+TGG - Chr1:1646697-1646716 MsG0180000115.01.T01:intron 45.0%
AATTCATAGCCTCCCCCTTT+AGG + Chr1:1646697-1646716 None:intergenic 45.0%
ACGACGCTGATACAGAAGTT+AGG + Chr1:1646591-1646610 None:intergenic 45.0%
AGCATTAGTGTGCATTCCTC+TGG - Chr1:1645996-1646015 MsG0180000115.01.T01:CDS 45.0%
AGGAATTAGGAGGGAATCCT+TGG - Chr1:1647268-1647287 MsG0180000115.01.T01:intron 45.0%
AGGATACTTATGGACCAAGG+AGG + Chr1:1645434-1645453 None:intergenic 45.0%
AGGGCAAAAATGGTCATACC+AGG - Chr1:1646550-1646569 MsG0180000115.01.T01:intron 45.0%
ATTAGGTACAGGTGTCCCTT+GGG - Chr1:1644275-1644294 MsG0180000115.01.T01:CDS 45.0%
CAAAGGAGAATCCTCATCTC+TGG - Chr1:1643214-1643233 MsG0180000115.01.T01:three_prime_UTR 45.0%
CAGAGATGAGGATTCTCCTT+TGG + Chr1:1643216-1643235 None:intergenic 45.0%
CAGGCACATGTATTCTCTTC+AGG - Chr1:1645326-1645345 MsG0180000115.01.T01:intron 45.0%
CAGTGAGTTTGGCTGAATCA+CGG + Chr1:1644470-1644489 None:intergenic 45.0%
CATCTGTTCTACAATCAGGG+AGG + Chr1:1645454-1645473 None:intergenic 45.0%
CATGGACAGAAGGATTTGAC+AGG - Chr1:1646530-1646549 MsG0180000115.01.T01:intron 45.0%
CCTATTCCCATTTGGTCATC+AGG - Chr1:1644746-1644765 MsG0180000115.01.T01:intron 45.0%
CCTGATGACCAAATGGGAAT+AGG + Chr1:1644749-1644768 None:intergenic 45.0%
CTAAACTATGGACCGAGTCT+TGG - Chr1:1644622-1644641 MsG0180000115.01.T01:CDS 45.0%
CTCAAACTGGGCTGCAAAAA+TGG - Chr1:1644245-1644264 MsG0180000115.01.T01:intron 45.0%
CTCCTGGCAATGTACTATTC+TGG - Chr1:1643443-1643462 MsG0180000115.01.T01:intron 45.0%
CTGAAGAGAATACATGTGCC+TGG + Chr1:1645328-1645347 None:intergenic 45.0%
CTGGTCATGCATACTCAAAC+TGG - Chr1:1644232-1644251 MsG0180000115.01.T01:intron 45.0%
CTGTCAAATCCTTCTGTCCA+TGG + Chr1:1646532-1646551 None:intergenic 45.0%
CTTCCTTACACATCACCCAA+GGG + Chr1:1644293-1644312 None:intergenic 45.0%
GAAAGCAAAAGATGGAGGGT+TGG - Chr1:1643378-1643397 MsG0180000115.01.T01:CDS 45.0%
GAAATGTGTGTAGATGTGGG+AGG - Chr1:1643345-1643364 MsG0180000115.01.T01:CDS 45.0%
GACATGAGCAGTATGGGAAA+GGG - Chr1:1646961-1646980 MsG0180000115.01.T01:CDS 45.0%
GACCTTATGTTTGTGCTGAG+TGG - Chr1:1643656-1643675 MsG0180000115.01.T01:CDS 45.0%
GAGGAATGCACACTAATGCT+TGG + Chr1:1645996-1646015 None:intergenic 45.0%
GCACATTTCAATGCACCTGA+CGG - Chr1:1646919-1646938 MsG0180000115.01.T01:intron 45.0%
GCACTTCTTAGTGTAGCTGT+TGG - Chr1:1646354-1646373 MsG0180000115.01.T01:CDS 45.0%
GCATTGGACATGAGCAGTAT+GGG - Chr1:1646955-1646974 MsG0180000115.01.T01:CDS 45.0%
GTATGGGAAAGGGTCAAGTA+TGG - Chr1:1646971-1646990 MsG0180000115.01.T01:CDS 45.0%
GTCCGAAATTAGTTCCTCCA+TGG + Chr1:1644975-1644994 None:intergenic 45.0%
GTGCATTGAAATGTGCCTGA+AGG + Chr1:1646915-1646934 None:intergenic 45.0%
GTGGACAACCTACTCAAAGA+TGG - Chr1:1647100-1647119 MsG0180000115.01.T01:intron 45.0%
GTTTGTGCTGAGTGGAACTT+TGG - Chr1:1643664-1643683 MsG0180000115.01.T01:CDS 45.0%
TAGGTTGTCCACAACCAACT+TGG + Chr1:1647092-1647111 None:intergenic 45.0%
TCATGGAAGTCAGGAATCAC+AGG - Chr1:1646482-1646501 MsG0180000115.01.T01:intron 45.0%
TCTTCCTTACACATCACCCA+AGG + Chr1:1644294-1644313 None:intergenic 45.0%
TTAACCAGGACCTTGGAACA+TGG + Chr1:1647218-1647237 None:intergenic 45.0%
TTACCAACCACTCCAAGACT+CGG + Chr1:1644637-1644656 None:intergenic 45.0%
TTAGAAGGCTAACTCACCAC+TGG + Chr1:1644330-1644349 None:intergenic 45.0%
TTTCGCCTGACGATAAGTTC+CGG + Chr1:1647067-1647086 None:intergenic 45.0%
TTTGCAGGTACCATGTTCCA+AGG - Chr1:1647205-1647224 MsG0180000115.01.T01:CDS 45.0%
! AAGCTGTTTCAGTCACAAGG+TGG - Chr1:1643996-1644015 MsG0180000115.01.T01:intron 45.0%
! ATGGCTGTTGGATTAGGTAC+AGG - Chr1:1644264-1644283 MsG0180000115.01.T01:CDS 45.0%
! CAAGACTCGGTCCATAGTTT+AGG + Chr1:1644624-1644643 None:intergenic 45.0%
! CCTATTTCCTTTTGCAGGCT+CGG - Chr1:1646257-1646276 MsG0180000115.01.T01:intron 45.0%
! GTTTGCTAGAAAAGCTGCAC+AGG + Chr1:1645357-1645376 None:intergenic 45.0%
! TTGCTTCATGGTCTTGACCA+TGG - Chr1:1646512-1646531 MsG0180000115.01.T01:intron 45.0%
!! ACAAACAGGTTGGCCTAAAG+GGG - Chr1:1646681-1646700 MsG0180000115.01.T01:intron 45.0%
!! ACACAAACAGGTTGGCCTAA+AGG - Chr1:1646679-1646698 MsG0180000115.01.T01:intron 45.0%
!! ACCTTGTGCCATTTCAACTG+TGG + Chr1:1646785-1646804 None:intergenic 45.0%
!! CACAAACAGGTTGGCCTAAA+GGG - Chr1:1646680-1646699 MsG0180000115.01.T01:intron 45.0%
!! TATACTTCAGGGGTGCTTCT+TGG + Chr1:1643253-1643272 None:intergenic 45.0%
!! TCTGTTCTGAAACTGATCCC+AGG + Chr1:1643816-1643835 None:intergenic 45.0%
!!! GTTGGTTTTAACCAGGACCT+TGG + Chr1:1647225-1647244 None:intergenic 45.0%
ACCTGACGGAGTTGAACCAT+TGG - Chr1:1646933-1646952 MsG0180000115.01.T01:intron 50.0%
ACTAATTTCGGACGATCGGC+TGG - Chr1:1644982-1645001 MsG0180000115.01.T01:CDS 50.0%
AGGTTTGCGTGCATCATACC+TGG + Chr1:1646571-1646590 None:intergenic 50.0%
CCGAGCCTGCAAAAGGAAAT+AGG + Chr1:1646260-1646279 None:intergenic 50.0%
CGGAGTTGAACCATTGGCAT+TGG - Chr1:1646939-1646958 MsG0180000115.01.T01:intron 50.0%
CTAACTCACCACTGGATCTG+GGG + Chr1:1644322-1644341 None:intergenic 50.0%
CTATGCCGGAACTTATCGTC+AGG - Chr1:1647059-1647078 MsG0180000115.01.T01:intron 50.0%
CTCCAAGTGCTCTTCCTTGT+GGG + Chr1:1644209-1644228 None:intergenic 50.0%
CTGCTCATGTCCAATGCCAA+TGG + Chr1:1646952-1646971 None:intergenic 50.0%
GAGAATGAGTATGGCCCACA+AGG - Chr1:1644192-1644211 MsG0180000115.01.T01:intron 50.0%
GATTAGGTACAGGTGTCCCT+TGG - Chr1:1644274-1644293 MsG0180000115.01.T01:CDS 50.0%
GCCACAGTTGAAATGGCACA+AGG - Chr1:1646781-1646800 MsG0180000115.01.T01:intron 50.0%
GCCCGTTTCATACAAAAGGG+TGG - Chr1:1644829-1644848 MsG0180000115.01.T01:intron 50.0%
GCTAACTCACCACTGGATCT+GGG + Chr1:1644323-1644342 None:intergenic 50.0%
GGACATGAGCAGTATGGGAA+AGG - Chr1:1646960-1646979 MsG0180000115.01.T01:CDS 50.0%
GGGAGGATACTTATGGACCA+AGG + Chr1:1645437-1645456 None:intergenic 50.0%
TACTTATGGACCAAGGAGGC+AGG + Chr1:1645430-1645449 None:intergenic 50.0%
TGGGCTGCAAAAATGGCTGT+TGG - Chr1:1644252-1644271 MsG0180000115.01.T01:CDS 50.0%
TGTCCCTTGGGTGATGTGTA+AGG - Chr1:1644287-1644306 MsG0180000115.01.T01:CDS 50.0%
TTCCAGCACGTAGGTCGATA+GGG + Chr1:1646323-1646342 None:intergenic 50.0%
! CTTTTGCAGGCTCGGCTTTT+GGG - Chr1:1646265-1646284 MsG0180000115.01.T01:intron 50.0%
! GGCATTGGACATGAGCAGTA+TGG - Chr1:1646954-1646973 MsG0180000115.01.T01:CDS 50.0%
! TGGTCTTGACCATGGACAGA+AGG - Chr1:1646520-1646539 MsG0180000115.01.T01:intron 50.0%
!! CAAACAGGTTGGCCTAAAGG+GGG - Chr1:1646682-1646701 MsG0180000115.01.T01:intron 50.0%
!! GCGAAATGCCAAGTTGGTTG+TGG - Chr1:1647081-1647100 MsG0180000115.01.T01:intron 50.0%
!! TGTGCCATTTCAACTGTGGC+TGG + Chr1:1646781-1646800 None:intergenic 50.0%
AATTTCGGACGATCGGCTGG+AGG - Chr1:1644985-1645004 MsG0180000115.01.T01:CDS 55.0%
AGATCCTGAACTGGTCGCTG+GGG + Chr1:1644796-1644815 None:intergenic 55.0%
AGATGATGCCCCAGATCCAG+TGG - Chr1:1644311-1644330 MsG0180000115.01.T01:CDS 55.0%
CACATGGACAGCATCACCAG+AGG + Chr1:1646015-1646034 None:intergenic 55.0%
CCAAAAGCCGAGCCTGCAAA+AGG + Chr1:1646267-1646286 None:intergenic 55.0%
CGTCAGGCGAAATGCCAAGT+TGG - Chr1:1647075-1647094 MsG0180000115.01.T01:intron 55.0%
CTATGGACCGAGTCTTGGAG+TGG - Chr1:1644627-1644646 MsG0180000115.01.T01:CDS 55.0%
GAGATCCTGAACTGGTCGCT+GGG + Chr1:1644797-1644816 None:intergenic 55.0%
GCCAATGGTTCAACTCCGTC+AGG + Chr1:1646937-1646956 None:intergenic 55.0%
GCTCCAAGTGCTCTTCCTTG+TGG + Chr1:1644210-1644229 None:intergenic 55.0%
GGCTAACTCACCACTGGATC+TGG + Chr1:1644324-1644343 None:intergenic 55.0%
GGTACCATGTTCCAAGGTCC+TGG - Chr1:1647211-1647230 MsG0180000115.01.T01:CDS 55.0%
GTTCCAGCACGTAGGTCGAT+AGG + Chr1:1646324-1646343 None:intergenic 55.0%
! CCTTTTGCAGGCTCGGCTTT+TGG - Chr1:1646264-1646283 MsG0180000115.01.T01:intron 55.0%
!! GGAAGAGCACTTGGAGCTTC+TGG - Chr1:1644213-1644232 MsG0180000115.01.T01:intron 55.0%
!!! AGGCTCGGCTTTTGGGACAA+GGG - Chr1:1646272-1646291 MsG0180000115.01.T01:intron 55.0%
CGAGATCCTGAACTGGTCGC+TGG + Chr1:1644798-1644817 None:intergenic 60.0%
GAATCCCCAGCGACCAGTTC+AGG - Chr1:1644789-1644808 MsG0180000115.01.T01:intron 60.0%
GCGAACGCGAGATCCTGAAC+TGG + Chr1:1644805-1644824 None:intergenic 60.0%
GGACCGAGTCTTGGAGTGGT+TGG - Chr1:1644631-1644650 MsG0180000115.01.T01:CDS 60.0%
GGCACTATGACCTGCCTCCT+TGG - Chr1:1645417-1645436 MsG0180000115.01.T01:CDS 60.0%
!! ACAGGTTGGCCTAAAGGGGG+AGG - Chr1:1646685-1646704 MsG0180000115.01.T01:intron 60.0%
!! GGCCCACAAGGAAGAGCACT+TGG - Chr1:1644204-1644223 MsG0180000115.01.T01:intron 60.0%
!!! CAGGCTCGGCTTTTGGGACA+AGG - Chr1:1646271-1646290 MsG0180000115.01.T01:intron 60.0%
GGCCCTATCGACCTACGTGC+TGG - Chr1:1646318-1646337 MsG0180000115.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 1642893 1647742 1642893 ID=MsG0180000115.01;Name=MsG0180000115.01
Chr1 mRNA 1642893 1647742 1642893 ID=MsG0180000115.01.T01;Parent=MsG0180000115.01;Name=MsG0180000115.01.T01;_AED=0.46;_eAED=0.46;_QI=201|0.8|0.75|1|1|1|16|371|716
Chr1 exon 1647368 1647742 1647368 ID=MsG0180000115.01.T01:exon:7160;Parent=MsG0180000115.01.T01
Chr1 exon 1647182 1647277 1647182 ID=MsG0180000115.01.T01:exon:7161;Parent=MsG0180000115.01.T01
Chr1 exon 1646949 1647061 1646949 ID=MsG0180000115.01.T01:exon:7162;Parent=MsG0180000115.01.T01
Chr1 exon 1646784 1646850 1646784 ID=MsG0180000115.01.T01:exon:7163;Parent=MsG0180000115.01.T01
Chr1 exon 1646598 1646690 1646598 ID=MsG0180000115.01.T01:exon:7164;Parent=MsG0180000115.01.T01
Chr1 exon 1646299 1646446 1646299 ID=MsG0180000115.01.T01:exon:7165;Parent=MsG0180000115.01.T01
Chr1 exon 1645983 1646175 1645983 ID=MsG0180000115.01.T01:exon:7166;Parent=MsG0180000115.01.T01
Chr1 exon 1645382 1645490 1645382 ID=MsG0180000115.01.T01:exon:7167;Parent=MsG0180000115.01.T01
Chr1 exon 1645145 1645306 1645145 ID=MsG0180000115.01.T01:exon:7168;Parent=MsG0180000115.01.T01
Chr1 exon 1644870 1645048 1644870 ID=MsG0180000115.01.T01:exon:7169;Parent=MsG0180000115.01.T01
Chr1 exon 1644570 1644688 1644570 ID=MsG0180000115.01.T01:exon:7170;Parent=MsG0180000115.01.T01
Chr1 exon 1644252 1644361 1644252 ID=MsG0180000115.01.T01:exon:7171;Parent=MsG0180000115.01.T01
Chr1 exon 1644064 1644174 1644064 ID=MsG0180000115.01.T01:exon:7172;Parent=MsG0180000115.01.T01
Chr1 exon 1643833 1643946 1643833 ID=MsG0180000115.01.T01:exon:7173;Parent=MsG0180000115.01.T01
Chr1 exon 1643514 1643716 1643514 ID=MsG0180000115.01.T01:exon:7174;Parent=MsG0180000115.01.T01
Chr1 exon 1642893 1643423 1642893 ID=MsG0180000115.01.T01:exon:7175;Parent=MsG0180000115.01.T01
Chr1 five_prime_UTR 1647542 1647742 1647542 ID=MsG0180000115.01.T01:five_prime_utr;Parent=MsG0180000115.01.T01
Chr1 CDS 1647368 1647541 1647368 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1647182 1647277 1647182 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1646949 1647061 1646949 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1646784 1646850 1646784 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1646598 1646690 1646598 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1646299 1646446 1646299 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1645983 1646175 1645983 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1645382 1645490 1645382 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1645145 1645306 1645145 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1644870 1645048 1644870 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1644570 1644688 1644570 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1644252 1644361 1644252 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1644064 1644174 1644064 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1643833 1643946 1643833 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1643514 1643716 1643514 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 CDS 1643264 1643423 1643264 ID=MsG0180000115.01.T01:cds;Parent=MsG0180000115.01.T01
Chr1 three_prime_UTR 1642893 1643263 1642893 ID=MsG0180000115.01.T01:three_prime_utr;Parent=MsG0180000115.01.T01
Gene Sequence

>MsG0180000115.01.T01

ATGGAAACCAACTCAGTTTCCAAGCTTCTTCTGTTACTATTCTTCTCTATCTTCTTTCTTGGTTCTAAGCTTATTCATTGTAGTGTTACATATGATAGAAAAGCTATTATCATCAATGGCCAAAGGAGAATCCTCATCTCTGGTTCCATTCATTATCCAAGAAGCACCCCTGAAATGTGGGAGGATCTGATTCAGAAAGCAAAAGATGGAGGGTTGGATGTTATTGATACTTATGTGTTTTGGAATGTTCATGAACCTTCTCCTGGCAATTACAATTTTGAAGGAAGGTACGATCTAGTACATTTCATTAAGACAGTGCAGAAAAAAGGTCTTTATGTACATCTTAGAATTGGACCTTATGTTTGTGCTGAGTGGAACTTTGGAGGATTTCCTGTTTGGTTGAAGTATGTTCCTGGGATCAGTTTCAGAACAGATAATGGTCCTTTTAAGGCTGCAATGCAAGGTTTTACACAGAAGATTGTTCAAATGATGAAGAATGAAAAGCTGTTTCAGTCACAAGGTGGTCCAATAATTCTTTCTCAAATTGAGAATGAGTATGGCCCACAAGGAAGAGCACTTGGAGCTTCTGGTCATGCATACTCAAACTGGGCTGCAAAAATGGCTGTTGGATTAGGTACAGGTGTCCCTTGGGTGATGTGTAAGGAAGATGATGCCCCAGATCCAGTGGTGATGGCATACCGTGATTCAGCCAAACTCACTGCTAATCTAAATATGACTATGGATTACCTTCTAGTTAAGATAATAGAGTATGATTCATCCAATTATTTCCTACAGATAAATGCTTGCAATGGTTTTTACTGTGATGATTTCACTCCCAATAAACCATACAAGCCTAAACTATGGACCGAGTCTTGGAGTGGTTGGGAACCTAAATATGGTCATTTGAAGGACCTTCATAAAGCTATCAAGCAATGTGAACATGCTTTGGTTTCGTCAGATCCTACTGTTACATCATTAGGAGCATATGAACAGGCACATGTATTCTCTTCAGGAACAACCTGTGCAGCTTTTCTAGCAAACTATCATTCGAATTCGGCTGCAAGAGTGACATTCAACAATAGGCACTATGACCTGCCTCCTTGGTCCATAAGTATCCTCCCTGATTGTAGAACAGATGTATTTAACACTGCAAGAATGAGGTTTCAAACTTCACAAATCCAAATGTTGCCTAGCAATTCTAAGTTGTTATCATGGGAGACCTATGATGAAGATGTATCTTCGCTAGCGGAAAGTTCTAGAATCACAGCTTCTAGACTTCTAGAACAGATAGATGCTACAAGAGACACTAGTGACTATTTATGGTATATAACAAGTGTTGACATAAGTTCATCAGAATCATTTCTTCGTGGAAGGAACAAACCAAGCATTAGTGTGCATTCCTCTGGTGATGCTGTCCATGTGTTTATCAATGGGAAATTTTCAGGCATGTATAGCTCGGCTTTTGGGACAAGGGAAGACAGAAGTTTCACATTTAACGGCCCTATCGACCTACGTGCTGGAACTAATAAAATAGCACTTCTTAGTGTAGCTGTTGGATTGCCTAATGGTGGAATCCATTTTGAATCATGGAAGTCAGGAATCACAGGTCCAATTTTGCTTCATGGTCTTGACCATGGACAGAAGGATTTGACAGGGCAAAAATGGTCATACCAGGTTGGCCTAAAGGGGGAGGCTATGAATTTGGTGTCTCCCAATGGAGTCTCATCTGTTGATTGGGTGAGAGAGTCATTAGCTTCTCAAAACCAGCCACAGTTGAAATGGCACAAGGCACATTTCAATGCACCTGACGGAGTTGAACCATTGGCATTGGACATGAGCAGTATGGGAAAGGGTCAAGTATGGATCAATGGACAAAGCATAGGAAGATATTGGATGGTTTATGCAAAGGGCAACTGCAATTCTTGCAACTATGCCGGAACTTATCGTCAGGCGAAATGCCAAGTTGGTTGTGGACAACCTACTCAAAGATGGTACCATGTTCCAAGGTCCTGGTTAAAACCAACAAACAACTTGATGGTAGTTTTTGAGGAATTAGGAGGGAATCCTTGGAGAATATCTCTGGTAAAGAGGACAATACATACTCCAAGATCTAGTAAACCAAATTTAATGACTAATACAACACAAGGATGA

Protein sequence

>MsG0180000115.01.T01

METNSVSKLLLLLFFSIFFLGSKLIHCSVTYDRKAIIINGQRRILISGSIHYPRSTPEMWEDLIQKAKDGGLDVIDTYVFWNVHEPSPGNYNFEGRYDLVHFIKTVQKKGLYVHLRIGPYVCAEWNFGGFPVWLKYVPGISFRTDNGPFKAAMQGFTQKIVQMMKNEKLFQSQGGPIILSQIENEYGPQGRALGASGHAYSNWAAKMAVGLGTGVPWVMCKEDDAPDPVVMAYRDSAKLTANLNMTMDYLLVKIIEYDSSNYFLQINACNGFYCDDFTPNKPYKPKLWTESWSGWEPKYGHLKDLHKAIKQCEHALVSSDPTVTSLGAYEQAHVFSSGTTCAAFLANYHSNSAARVTFNNRHYDLPPWSISILPDCRTDVFNTARMRFQTSQIQMLPSNSKLLSWETYDEDVSSLAESSRITASRLLEQIDATRDTSDYLWYITSVDISSSESFLRGRNKPSISVHSSGDAVHVFINGKFSGMYSSAFGTREDRSFTFNGPIDLRAGTNKIALLSVAVGLPNGGIHFESWKSGITGPILLHGLDHGQKDLTGQKWSYQVGLKGEAMNLVSPNGVSSVDWVRESLASQNQPQLKWHKAHFNAPDGVEPLALDMSSMGKGQVWINGQSIGRYWMVYAKGNCNSCNYAGTYRQAKCQVGCGQPTQRWYHVPRSWLKPTNNLMVVFEELGGNPWRISLVKRTIHTPRSSKPNLMTNTTQG*