AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048703.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048703.01.T01 MTR_4g085630 90.126 557 30 1 1 532 1 557 0.0 1014
MsG0080048703.01.T01 MTR_1g019200 44.737 304 146 7 241 532 415 708 4.35e-66 227
MsG0080048703.01.T01 MTR_1g009680 45.455 165 77 3 372 526 308 469 1.26e-38 147
MsG0080048703.01.T01 MTR_3g108808 44.643 168 79 4 373 529 368 532 7.40e-35 138
MsG0080048703.01.T01 MTR_7g100950 46.104 154 76 4 381 530 397 547 7.59e-35 138
MsG0080048703.01.T01 MTR_7g100950 44.872 156 77 4 381 530 397 549 1.21e-33 134
MsG0080048703.01.T01 MTR_1g066430 51.327 113 51 2 419 530 588 697 2.05e-32 132
MsG0080048703.01.T01 MTR_2g078450 46.154 130 62 2 410 531 388 517 2.08e-32 130
MsG0080048703.01.T01 MTR_1g066400 49.573 117 55 2 416 531 417 530 5.55e-31 126
MsG0080048703.01.T01 MTR_2g078440 50.943 106 49 1 426 531 197 299 1.71e-30 121
MsG0080048703.01.T01 MTR_2g076290 42.982 114 57 1 426 531 217 330 4.16e-26 109
MsG0080048703.01.T01 MTR_6g082620 48.598 107 54 1 426 531 252 358 2.09e-25 107
MsG0080048703.01.T01 MTR_5g016960 39.597 149 88 2 383 530 449 596 4.99e-25 109
MsG0080048703.01.T01 MTR_8g106240 45.299 117 63 1 416 531 236 352 1.00e-24 105
MsG0080048703.01.T01 MTR_3g025940 36.806 144 81 1 387 530 312 445 2.11e-23 103
MsG0080048703.01.T01 MTR_5g016920 49.333 75 38 0 456 530 71 145 6.96e-19 84.0
MsG0080048703.01.T01 MTR_5g079050 48.684 76 39 0 455 530 283 358 1.27e-18 88.2
MsG0080048703.01.T01 MTR_5g016980 34.884 129 75 4 405 530 211 333 1.46e-17 84.3
MsG0080048703.01.T01 MTR_5g078900 46.053 76 41 0 455 530 283 358 2.45e-17 84.3
MsG0080048703.01.T01 MTR_2g076240 37.398 123 48 2 418 532 81 182 4.17e-17 80.1
MsG0080048703.01.T01 MTR_4g065670 40.404 99 59 0 433 531 144 242 6.07e-17 80.9
MsG0080048703.01.T01 MTR_4g065670 40.404 99 59 0 433 531 151 249 8.42e-17 80.9
MsG0080048703.01.T01 MTR_3g088100 42.222 90 50 1 436 525 111 198 3.69e-16 77.8
MsG0080048703.01.T01 MTR_8g037150 35.354 99 64 0 433 531 144 242 4.31e-16 78.6
MsG0080048703.01.T01 MTR_1g114240 41.000 100 57 1 433 532 232 329 1.23e-14 75.5
MsG0080048703.01.T01 MTR_1g114240 41.000 100 57 1 433 532 238 335 1.24e-14 75.5
MsG0080048703.01.T01 MTR_8g036640 35.955 89 57 0 433 521 142 230 3.91e-13 70.5
MsG0080048703.01.T01 MTR_4g017500 34.314 102 45 1 431 532 1 80 5.55e-13 65.1
MsG0080048703.01.T01 MTR_5g016940 46.552 58 30 1 470 526 283 340 1.21e-12 69.7
MsG0080048703.01.T01 MTR_1g047180 35.238 105 61 2 424 528 629 726 2.00e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048703.01.T01 AT4G34040 41.535 508 228 13 72 532 181 666 2.80e-96 306
MsG0080048703.01.T01 AT2G15530 40.661 514 258 16 52 532 182 681 1.19e-92 297
MsG0080048703.01.T01 AT2G15530 39.665 537 253 17 52 532 182 703 2.52e-91 294
MsG0080048703.01.T01 AT2G15530 39.665 537 253 17 52 532 182 703 2.52e-91 294
MsG0080048703.01.T01 AT2G15530 39.665 537 253 17 52 532 182 703 2.52e-91 294
MsG0080048703.01.T01 AT2G15530 39.665 537 253 17 52 532 182 703 2.52e-91 294
MsG0080048703.01.T01 AT2G15530 39.665 537 253 17 52 532 182 703 2.52e-91 294
MsG0080048703.01.T01 AT2G15530 38.752 529 257 15 52 526 182 697 6.75e-87 285
MsG0080048703.01.T01 AT5G42940 34.111 557 288 23 31 530 148 682 1.33e-60 212
MsG0080048703.01.T01 AT5G42940 34.111 557 288 23 31 530 148 682 1.33e-60 212
MsG0080048703.01.T01 AT1G45180 40.510 353 191 9 189 530 245 589 3.41e-58 204
MsG0080048703.01.T01 AT1G45180 40.510 353 191 9 189 530 293 637 5.63e-58 204
MsG0080048703.01.T01 AT1G45180 40.510 353 191 9 189 530 293 637 5.63e-58 204
MsG0080048703.01.T01 AT1G45180 40.510 353 191 9 189 530 293 637 5.63e-58 204
MsG0080048703.01.T01 AT5G24870 45.732 164 78 4 376 529 350 512 9.89e-38 146
MsG0080048703.01.T01 AT5G24870 45.732 164 78 4 376 529 350 512 9.89e-38 146
MsG0080048703.01.T01 AT5G24870 45.732 164 78 4 376 529 350 512 9.89e-38 146
MsG0080048703.01.T01 AT5G10650 47.297 148 67 4 392 529 373 519 9.80e-36 140
MsG0080048703.01.T01 AT5G10650 47.297 148 67 4 392 529 373 519 9.80e-36 140
MsG0080048703.01.T01 AT4G31450 47.059 153 72 2 389 532 343 495 1.06e-34 137
MsG0080048703.01.T01 AT4G31450 47.059 153 72 2 389 532 343 495 1.06e-34 137
MsG0080048703.01.T01 AT1G53190 50.000 114 49 2 426 531 375 488 1.19e-30 125
MsG0080048703.01.T01 AT1G53190 50.000 114 49 2 426 531 375 488 1.19e-30 125
MsG0080048703.01.T01 AT1G73760 43.902 123 67 1 407 529 243 363 1.72e-28 117
MsG0080048703.01.T01 AT3G15070 48.182 110 53 2 426 531 365 474 1.81e-28 119
MsG0080048703.01.T01 AT3G15070 48.182 110 53 2 426 531 365 474 1.81e-28 119
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 363 538 8.22e-27 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 379 554 1.34e-26 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 379 554 1.34e-26 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 379 554 1.34e-26 114
MsG0080048703.01.T01 AT2G37150 42.458 179 96 5 356 530 416 591 3.29e-26 113
MsG0080048703.01.T01 AT1G17970 42.400 125 65 2 407 529 245 364 4.20e-24 104
MsG0080048703.01.T01 AT5G67120 41.111 90 50 1 436 525 181 267 3.16e-17 82.4
MsG0080048703.01.T01 AT5G10650 42.593 108 51 4 392 489 373 479 4.06e-16 81.6
MsG0080048703.01.T01 AT3G19910 41.489 94 53 1 432 525 237 328 6.74e-16 79.7
MsG0080048703.01.T01 AT3G63530 35.354 99 64 0 433 531 145 243 1.21e-15 77.4
MsG0080048703.01.T01 AT3G63530 35.354 99 64 0 433 531 145 243 1.21e-15 77.4
MsG0080048703.01.T01 AT5G52140 36.634 101 56 1 434 526 175 275 2.18e-15 77.0
MsG0080048703.01.T01 AT1G36950 33.654 104 66 2 426 529 24 124 1.01e-13 71.2
MsG0080048703.01.T01 AT3G47180 37.363 91 54 2 436 525 115 203 6.89e-13 68.6
MsG0080048703.01.T01 AT4G00070 34.043 94 59 2 426 519 88 178 3.98e-12 65.5

Find 156 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTTCTTCTTTAGCTAAT+TGG 0.143461 contig405end:+25439 MsG0080048703.01.T01:CDS
CTGAGCTGATTGAGGGAAAA+AGG 0.221504 contig405end:-26295 None:intergenic
AAGTTCTTCTTTAGCTAATT+GGG 0.226927 contig405end:+25440 MsG0080048703.01.T01:CDS
GTTAATAACAACGATCCTTT+TGG 0.270646 contig405end:+25315 MsG0080048703.01.T01:CDS
TCCCTTGTACAATCTGAAAA+TGG 0.272688 contig405end:+25531 MsG0080048703.01.T01:CDS
AGGTGATTTGTCACCTTTAG+AGG 0.276118 contig405end:+25599 MsG0080048703.01.T01:CDS
TACAATCTGAAAATGGTTAC+TGG 0.301098 contig405end:+25538 MsG0080048703.01.T01:CDS
TTACATTTATACTGTGATAA+TGG 0.309211 contig405end:+28078 MsG0080048703.01.T01:three_prime_UTR
CCTCTCAATTTAACATCAAC+AGG 0.330426 contig405end:+25786 MsG0080048703.01.T01:CDS
TTTCTTGTATTCTGCTGAAA+TGG 0.334803 contig405end:-25642 None:intergenic
TGGACAGAATCTCGGTTTGC+TGG 0.349741 contig405end:+27783 MsG0080048703.01.T01:CDS
TCTGTTGATCTTAATGTTCC+TGG 0.349757 contig405end:+25570 MsG0080048703.01.T01:CDS
AACTTCCTCTCATCTTAGAT+TGG 0.351737 contig405end:+27989 MsG0080048703.01.T01:three_prime_UTR
AAATTGAGAGGTACAGATTC+CGG 0.354926 contig405end:-25774 None:intergenic
GTTTCTTCATTCAACCAAAT+AGG 0.360867 contig405end:+25367 MsG0080048703.01.T01:CDS
TTGCTGATGAAGCACCTATT+TGG 0.361321 contig405end:-25381 None:intergenic
GGCCATTCCTCCTCTACTTC+CGG 0.363757 contig405end:+26335 MsG0080048703.01.T01:CDS
TTCCAATGCATTTCCTTCAA+TGG 0.376501 contig405end:+25683 MsG0080048703.01.T01:CDS
CAGATTCCGGATGATGTAGA+TGG 0.380959 contig405end:-25761 None:intergenic
ATCTCGGTTTGCTGGATTGT+GGG 0.387032 contig405end:+27791 MsG0080048703.01.T01:CDS
AGGTTAGCAGCTGGAGCAGC+TGG 0.389981 contig405end:+25882 MsG0080048703.01.T01:intron
TCCGCAATACTTACCATTGA+AGG 0.391370 contig405end:-25696 None:intergenic
CGCGGGAAAGGTAAAGAAAC+TGG 0.399821 contig405end:+25285 MsG0080048703.01.T01:CDS
CCCTCAATCAGCTCAGCATC+TGG 0.403565 contig405end:+26302 MsG0080048703.01.T01:CDS
TCCGCATTGCTAGCAGGACT+TGG 0.414252 contig405end:-26860 None:intergenic
TTTCAGCCATGCCATGATAT+AGG 0.415855 contig405end:-27374 None:intergenic
ATGAACATGCCTGCATCTTC+AGG 0.416304 contig405end:+26092 MsG0080048703.01.T01:CDS
CTTAATGTTCCTGGAAGCTT+AGG 0.416639 contig405end:+25579 MsG0080048703.01.T01:CDS
AATTTGCAAAACAACGGCCT+TGG 0.421383 contig405end:+27870 MsG0080048703.01.T01:CDS
TCAGCATCTGGTACTCATAA+TGG 0.422284 contig405end:+26314 MsG0080048703.01.T01:CDS
ACTTGGATTACAGGAATTGT+TGG 0.422489 contig405end:+27515 MsG0080048703.01.T01:intron
GACAAATCACCTAAGCTTCC+AGG 0.422851 contig405end:-25588 None:intergenic
GCTATAAGAACTTGAAGATC+TGG 0.424200 contig405end:-26000 None:intergenic
TTAAATGTCCAGCTGGGATT+AGG 0.425206 contig405end:-26218 None:intergenic
GGATGCTCGGTACCATCTCT+TGG 0.437725 contig405end:-26068 None:intergenic
TCTTCAAGTTCTTATAGCTC+AGG 0.441108 contig405end:+26005 MsG0080048703.01.T01:CDS
GATAGAGAGAAGACATCAAT+TGG 0.443897 contig405end:+25342 MsG0080048703.01.T01:CDS
GGTGCTTCATCAGCAAGCTC+TGG 0.446881 contig405end:+25388 MsG0080048703.01.T01:CDS
ACAGGAATTGTTGGCATTGG+AGG 0.449223 contig405end:+27524 MsG0080048703.01.T01:intron
AAGCTCTGGGTACATGGCTT+GGG 0.452085 contig405end:+25402 MsG0080048703.01.T01:CDS
CAAGCTCTGGGTACATGGCT+TGG 0.453447 contig405end:+25401 MsG0080048703.01.T01:CDS
ATCAGCAAGCTCTGGGTACA+TGG 0.454476 contig405end:+25396 MsG0080048703.01.T01:CDS
TCCGTCATAAATGATGGTCT+TGG 0.456568 contig405end:-26401 None:intergenic
TGAAGATGCAGGCATGTTCA+TGG 0.458693 contig405end:-26090 None:intergenic
ACGGAAAAGGATGCATGTGC+AGG 0.463084 contig405end:-25950 None:intergenic
GAGGCATACCTCCTCCATCC+TGG 0.464929 contig405end:+26165 MsG0080048703.01.T01:CDS
TTGGCATTGGAGGAGCGTAT+AGG 0.467631 contig405end:+27534 MsG0080048703.01.T01:CDS
GTTGCATAGAACTATCTTCA+AGG 0.469481 contig405end:-25485 None:intergenic
ATTACAGGAATTGTTGGCAT+TGG 0.469952 contig405end:+27521 MsG0080048703.01.T01:intron
AGTTCTATGCAACTGTGTGC+TGG 0.471257 contig405end:+25495 MsG0080048703.01.T01:CDS
TACCATTGAAGGAAATGCAT+TGG 0.475872 contig405end:-25685 None:intergenic
CACCCCTCCGCATTGCTAGC+AGG 0.478449 contig405end:-26866 None:intergenic
ACTTCCTCTCATCTTAGATT+GGG 0.478741 contig405end:+27990 MsG0080048703.01.T01:three_prime_UTR
TTCATGGTTAAATGTCCAGC+TGG 0.479375 contig405end:-26225 None:intergenic
GCAGCTCTATTCCACGGAAA+AGG 0.483068 contig405end:-25963 None:intergenic
TTCTCTCTATCTAATCCAAA+AGG 0.484392 contig405end:-25330 None:intergenic
CTTGAAGATCTGGCCACTCT+AGG 0.488392 contig405end:-25990 None:intergenic
GTACATGGCTTGGGAGATAG+TGG 0.491239 contig405end:+25411 MsG0080048703.01.T01:CDS
TCTAGCAATGTGAACAATGC+TGG 0.492365 contig405end:+26143 MsG0080048703.01.T01:CDS
TTTGACCCGTTCCTATATCA+TGG 0.495379 contig405end:+27363 MsG0080048703.01.T01:CDS
GCATGTGCAGGGATGGTGAC+TGG 0.496504 contig405end:-25938 None:intergenic
CCAGATGCTGAGCTGATTGA+GGG 0.499253 contig405end:-26302 None:intergenic
AATCTCGGTTTGCTGGATTG+TGG 0.503034 contig405end:+27790 MsG0080048703.01.T01:CDS
ACCAGATGCTGAGCTGATTG+AGG 0.503694 contig405end:-26303 None:intergenic
AATGACCCATCTACATCATC+CGG 0.504390 contig405end:+25755 MsG0080048703.01.T01:CDS
CCATGCCATGATATAGGAAC+GGG 0.504505 contig405end:-27368 None:intergenic
GCGTCTCCCCTCATTGTCAA+AGG 0.505562 contig405end:-26474 None:intergenic
AGTTCTTCTTTAGCTAATTG+GGG 0.509140 contig405end:+25441 MsG0080048703.01.T01:CDS
CGAACCTTGCTGTATCTGTC+AGG 0.510627 contig405end:+27650 MsG0080048703.01.T01:CDS
ATCATTTATGACGGAGAGAA+GGG 0.513405 contig405end:+26409 MsG0080048703.01.T01:CDS
TCGTAGGAGGAATATGTTGA+TGG 0.514134 contig405end:+27763 MsG0080048703.01.T01:intron
GGCCTCTACGAAACTTTGAT+AGG 0.519192 contig405end:+25730 MsG0080048703.01.T01:CDS
TCCTTCAATGGTAAGTATTG+CGG 0.521830 contig405end:+25695 MsG0080048703.01.T01:CDS
CTTGTATTCTGCTGAAATGG+AGG 0.528159 contig405end:-25639 None:intergenic
TGAAGGAGGGCCGGAAGTAG+AGG 0.529847 contig405end:-26345 None:intergenic
GATGCTCGGTACCATCTCTT+GGG 0.530647 contig405end:-26067 None:intergenic
GAGTTTCAGAGTTCAGTCCC+TGG 0.531646 contig405end:+26270 MsG0080048703.01.T01:CDS
TTCTCCTCGTCACGAGGCCA+AGG 0.532429 contig405end:-27887 None:intergenic
TATGTTGATGGACAGAATCT+CGG 0.533020 contig405end:+27775 MsG0080048703.01.T01:CDS
CATCATTTATGACGGAGAGA+AGG 0.535519 contig405end:+26408 MsG0080048703.01.T01:CDS
AACTCATCTGATCGCGGGAA+AGG 0.537842 contig405end:+25273 MsG0080048703.01.T01:CDS
ATGGATATGATATGTGAGGA+GGG 0.538703 contig405end:-27915 None:intergenic
TTGTATTCTGCTGAAATGGA+GGG 0.540043 contig405end:-25638 None:intergenic
GTGCTTCATCAGCAAGCTCT+GGG 0.541448 contig405end:+25389 MsG0080048703.01.T01:CDS
CTTCTCTCCGTCATAAATGA+TGG 0.542772 contig405end:-26407 None:intergenic
GGTAAGTATTGCGGAAAATG+TGG 0.545122 contig405end:+25704 MsG0080048703.01.T01:CDS
ACTCGTTGCCTAATCCCAGC+TGG 0.546716 contig405end:+26210 MsG0080048703.01.T01:CDS
AGAATACCTCAGATATAAGC+CGG 0.546777 contig405end:-26496 None:intergenic
GGCCGGAAGTAGAGGAGGAA+TGG 0.548685 contig405end:-26337 None:intergenic
GTAACACGGAAATCCTCTAA+AGG 0.548952 contig405end:-25612 None:intergenic
AACATTACCCTTTGACAATG+AGG 0.550770 contig405end:+26466 MsG0080048703.01.T01:CDS
CCTGTTGATGTTAAATTGAG+AGG 0.551479 contig405end:-25786 None:intergenic
TTAAGAATCTTCCCAAGAGA+TGG 0.552146 contig405end:+26056 MsG0080048703.01.T01:CDS
CGTCTCCCCTCATTGTCAAA+GGG 0.557688 contig405end:-26473 None:intergenic
GAAGATGCATACCAACCTGC+AGG 0.560217 contig405end:-26122 None:intergenic
ATAAATGATGGTCTTGGATG+TGG 0.560899 contig405end:-26395 None:intergenic
CCCGTTCCTATATCATGGCA+TGG 0.564089 contig405end:+27368 MsG0080048703.01.T01:CDS
CTGAGAAAATGAAGGAGGGC+CGG 0.564669 contig405end:-26354 None:intergenic
CGTATAGGAGATGTAAGCAC+TGG 0.564746 contig405end:+27549 MsG0080048703.01.T01:CDS
ACATTACCCTTTGACAATGA+GGG 0.569813 contig405end:+26467 MsG0080048703.01.T01:CDS
GGTAATGTTCGCAATGAATG+AGG 0.571479 contig405end:-26452 None:intergenic
TTGGTGGTTAAGCTATATAG+TGG 0.573596 contig405end:+28053 MsG0080048703.01.T01:three_prime_UTR
CTAGAACCCTGAGAAAATGA+AGG 0.574039 contig405end:-26362 None:intergenic
TTGACAATGAGGGGAGACGC+CGG 0.574448 contig405end:+26477 MsG0080048703.01.T01:CDS
GGTTCATGTCCTGAAGATGC+AGG 0.579750 contig405end:-26101 None:intergenic
AGGCATGTTCATGGGATGCT+CGG 0.582337 contig405end:-26081 None:intergenic
TTGCTAACTCATCTGATCGC+GGG 0.582591 contig405end:+25268 MsG0080048703.01.T01:CDS
CGTTCCCAATCTAAGATGAG+AGG 0.582663 contig405end:-27994 None:intergenic
GATCCGATCCAGGATGGAGG+AGG 0.587181 contig405end:-26173 None:intergenic
TCTTCAGGACATGAACCTGC+AGG 0.587539 contig405end:+26107 MsG0080048703.01.T01:CDS
GGATTAGCAGCTCTATTCCA+CGG 0.587662 contig405end:-25969 None:intergenic
AAGACATGTTATCAACATCA+AGG 0.587950 contig405end:-27422 None:intergenic
CGGAAAAGGATGCATGTGCA+GGG 0.589482 contig405end:-25949 None:intergenic
AAGTCCTGCTAGCAATGCGG+AGG 0.591095 contig405end:+26862 MsG0080048703.01.T01:CDS
ACGGCCTTGGCCTCGTGACG+AGG 0.592438 contig405end:+27883 MsG0080048703.01.T01:exon
ATACCTCCTCCATCCTGGAT+CGG 0.597148 contig405end:+26170 MsG0080048703.01.T01:CDS
AGTCCTGCTAGCAATGCGGA+GGG 0.600021 contig405end:+26863 MsG0080048703.01.T01:CDS
AGGAGGGCCGGAAGTAGAGG+AGG 0.600626 contig405end:-26342 None:intergenic
GCCATGCCATGATATAGGAA+CGG 0.601493 contig405end:-27369 None:intergenic
GTTTGAACTAGATCCGATCC+AGG 0.602400 contig405end:-26183 None:intergenic
TTGCATAGAACTATCTTCAA+GGG 0.607661 contig405end:-25484 None:intergenic
GAAGATGCAGGCATGTTCAT+GGG 0.612414 contig405end:-26089 None:intergenic
AGCTGGGATTAGGCAACGAG+TGG 0.614305 contig405end:-26208 None:intergenic
TCATGGTTAAATGTCCAGCT+GGG 0.617200 contig405end:-26224 None:intergenic
AGATTCCGGATGATGTAGAT+GGG 0.618088 contig405end:-25760 None:intergenic
CATTACCCTTTGACAATGAG+GGG 0.621079 contig405end:+26468 MsG0080048703.01.T01:CDS
TCCAAGACCATCATTTATGA+CGG 0.623304 contig405end:+26400 MsG0080048703.01.T01:CDS
GAACTAGATCCGATCCAGGA+TGG 0.623562 contig405end:-26179 None:intergenic
AAAGGATGCATGTGCAGGGA+TGG 0.625312 contig405end:-25945 None:intergenic
GAAATGGAGGGCTAGTAACA+CGG 0.626528 contig405end:-25626 None:intergenic
AATGGATATGATATGTGAGG+AGG 0.626986 contig405end:-27916 None:intergenic
AACCCTGAGAAAATGAAGGA+GGG 0.627593 contig405end:-26358 None:intergenic
GAACCCTGAGAAAATGAAGG+AGG 0.629118 contig405end:-26359 None:intergenic
GAGACGCCGGCTTATATCTG+AGG 0.637714 contig405end:+26490 MsG0080048703.01.T01:CDS
CAGGACATGAACCTGCAGGT+TGG 0.639313 contig405end:+26111 MsG0080048703.01.T01:CDS
TAGAGCTGCTAATCCTAGAG+TGG 0.639565 contig405end:+25977 MsG0080048703.01.T01:CDS
CTAGATCCGATCCAGGATGG+AGG 0.640498 contig405end:-26176 None:intergenic
CTCCTATCAAAGTTTCGTAG+AGG 0.644531 contig405end:-25732 None:intergenic
GTGCCCAATTTGCAAAACAA+CGG 0.647258 contig405end:+27864 MsG0080048703.01.T01:CDS
ATTGCTAACTCATCTGATCG+CGG 0.649060 contig405end:+25267 MsG0080048703.01.T01:CDS
GGGTGAGAACTTACGAGCTG+AGG 0.649232 contig405end:+26884 MsG0080048703.01.T01:CDS
GAGAGATTCTCCTCGTCACG+AGG 0.654973 contig405end:-27893 None:intergenic
GTCCTGCTAGCAATGCGGAG+GGG 0.658388 contig405end:+26864 MsG0080048703.01.T01:CDS
TCATTTATGACGGAGAGAAG+GGG 0.659104 contig405end:+26410 MsG0080048703.01.T01:CDS
TCTATGCAACTGTGTGCTGG+AGG 0.661076 contig405end:+25498 MsG0080048703.01.T01:CDS
GTATTGCGGAAAATGTGGAA+AGG 0.668186 contig405end:+25709 MsG0080048703.01.T01:CDS
CATACCTGACAGATACAGCA+AGG 0.680407 contig405end:-27654 None:intergenic
TTTATGACGGAGAGAAGGGG+TGG 0.681408 contig405end:+26413 MsG0080048703.01.T01:CDS
CTCTCAATTTAACATCAACA+GGG 0.682031 contig405end:+25787 MsG0080048703.01.T01:CDS
AGCAATGTGAACAATGCTGG+AGG 0.684313 contig405end:+26146 MsG0080048703.01.T01:CDS
AAAGGTAAAGAAACTGGTAA+CGG 0.684761 contig405end:+25291 MsG0080048703.01.T01:CDS
TGTTGATAACATGTCTTACG+AGG 0.689280 contig405end:+27428 MsG0080048703.01.T01:CDS
GATAATGGATATGATATGTG+AGG 0.698911 contig405end:-27919 None:intergenic
GCCAAGTCCTGCTAGCAATG+CGG 0.702352 contig405end:+26859 MsG0080048703.01.T01:CDS
ACTGTGTGATGCAGTTACTG+TGG 0.719811 contig405end:-27822 None:intergenic
ACAGTAACTGCATCACACAG+TGG 0.758156 contig405end:+27824 MsG0080048703.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGTAATCAATAATTC+TGG + contig405end:27160-27179 MsG0080048703.01.T01:intron 15.0%
!! TAGACATAAAAAAGAAATAT+TGG + contig405end:28034-28053 MsG0080048703.01.T01:three_prime_UTR 15.0%
!! TGAACTAAATAACTAATATA+CGG - contig405end:27227-27246 None:intergenic 15.0%
!! ACATAAAAAAGAAATATTGG+TGG + contig405end:28037-28056 MsG0080048703.01.T01:three_prime_UTR 20.0%
!! CAAAAGATAAAAACTGATAA+TGG - contig405end:27937-27956 None:intergenic 20.0%
!! TTACATTTATACTGTGATAA+TGG + contig405end:28078-28097 MsG0080048703.01.T01:three_prime_UTR 20.0%
! AAAATGCTTATAGTAGAATC+AGG + contig405end:27076-27095 MsG0080048703.01.T01:intron 25.0%
! AACATATCTTTGTATCATAC+TGG - contig405end:27697-27716 None:intergenic 25.0%
! AAGTTCTTCTTTAGCTAATT+GGG + contig405end:25440-25459 MsG0080048703.01.T01:CDS 25.0%
! CATCAAGTGTAATAAAATGA+TGG - contig405end:26991-27010 None:intergenic 25.0%
! GTATGATACAAAGATATGTT+TGG + contig405end:27697-27716 MsG0080048703.01.T01:intron 25.0%
!! AGTGCTTTTAGATATCATAA+AGG - contig405end:28116-28135 None:intergenic 25.0%
!!! TGCTTATTTTTAGCTAAATG+TGG + contig405end:26792-26811 MsG0080048703.01.T01:intron 25.0%
AAAGGTAAAGAAACTGGTAA+CGG + contig405end:25291-25310 MsG0080048703.01.T01:CDS 30.0%
AAGACATGTTATCAACATCA+AGG - contig405end:27425-27444 None:intergenic 30.0%
AGTTCTTCTTTAGCTAATTG+GGG + contig405end:25441-25460 MsG0080048703.01.T01:CDS 30.0%
CAAGTTCTTCTTTAGCTAAT+TGG + contig405end:25439-25458 MsG0080048703.01.T01:CDS 30.0%
CCTCAGATAAAAGAGAAATA+GGG - contig405end:27026-27045 None:intergenic 30.0%
CGAGGTAAAAAGATGATATA+TGG + contig405end:27446-27465 MsG0080048703.01.T01:intron 30.0%
CTAAATATATCAGTATAGCC+TGG + contig405end:26599-26618 MsG0080048703.01.T01:intron 30.0%
CTCTCAATTTAACATCAACA+GGG + contig405end:25787-25806 MsG0080048703.01.T01:CDS 30.0%
GTTTCTTCATTCAACCAAAT+AGG + contig405end:25367-25386 MsG0080048703.01.T01:CDS 30.0%
TACAATCTGAAAATGGTTAC+TGG + contig405end:25538-25557 MsG0080048703.01.T01:CDS 30.0%
TCAACTCGCATTCAATTTAT+GGG - contig405end:27137-27156 None:intergenic 30.0%
TGGAACATAGAATAACTACA+TGG - contig405end:26834-26853 None:intergenic 30.0%
TTCAACTCGCATTCAATTTA+TGG - contig405end:27138-27157 None:intergenic 30.0%
TTCTCTCTATCTAATCCAAA+AGG - contig405end:25333-25352 None:intergenic 30.0%
TTGCATAGAACTATCTTCAA+GGG - contig405end:25487-25506 None:intergenic 30.0%
TTGTTATAATTGCTGCATAC+TGG - contig405end:27108-27127 None:intergenic 30.0%
TTTAACGATCCTTGGATTTA+AGG + contig405end:25862-25881 MsG0080048703.01.T01:intron 30.0%
TTTCTTGTATTCTGCTGAAA+TGG - contig405end:25645-25664 None:intergenic 30.0%
! AACCATTTTCAGATTGTACA+AGG - contig405end:25536-25555 None:intergenic 30.0%
! ACCATTTTCAGATTGTACAA+GGG - contig405end:25535-25554 None:intergenic 30.0%
! ATAAATTGAATGCGAGTTGA+AGG + contig405end:27137-27156 MsG0080048703.01.T01:intron 30.0%
! GTTAATAACAACGATCCTTT+TGG + contig405end:25315-25334 MsG0080048703.01.T01:CDS 30.0%
! GTTCACAATTCTTTTCATGT+TGG + contig405end:27242-27261 MsG0080048703.01.T01:intron 30.0%
!! CCTATTTCTCTTTTATCTGA+GGG + contig405end:27024-27043 MsG0080048703.01.T01:intron 30.0%
!! GATAATGGATATGATATGTG+AGG - contig405end:27922-27941 None:intergenic 30.0%
AACATTACCCTTTGACAATG+AGG + contig405end:26466-26485 MsG0080048703.01.T01:CDS 35.0%
AACTTCCTCTCATCTTAGAT+TGG + contig405end:27989-28008 MsG0080048703.01.T01:three_prime_UTR 35.0%
AATCCTGACAATGCAAATGT+AGG - contig405end:27335-27354 None:intergenic 35.0%
AATGGATATGATATGTGAGG+AGG - contig405end:27919-27938 None:intergenic 35.0%
ACAATGCAAATGTAGGTCAA+AGG - contig405end:27328-27347 None:intergenic 35.0%
ACATTACCCTTTGACAATGA+GGG + contig405end:26467-26486 MsG0080048703.01.T01:CDS 35.0%
ACTTCCTCTCATCTTAGATT+GGG + contig405end:27990-28009 MsG0080048703.01.T01:three_prime_UTR 35.0%
ACTTGGATTACAGGAATTGT+TGG + contig405end:27515-27534 MsG0080048703.01.T01:intron 35.0%
AGAATACCTCAGATATAAGC+CGG - contig405end:26499-26518 None:intergenic 35.0%
ATACGATAAACAGTATAGCC+TGG + contig405end:26684-26703 MsG0080048703.01.T01:intron 35.0%
ATGGATATGATATGTGAGGA+GGG - contig405end:27918-27937 None:intergenic 35.0%
ATTACAGGAATTGTTGGCAT+TGG + contig405end:27521-27540 MsG0080048703.01.T01:intron 35.0%
CAACTCGCATTCAATTTATG+GGG - contig405end:27136-27155 None:intergenic 35.0%
CCCTCAGATAAAAGAGAAAT+AGG - contig405end:27027-27046 None:intergenic 35.0%
CCTCTCAATTTAACATCAAC+AGG + contig405end:25786-25805 MsG0080048703.01.T01:CDS 35.0%
CCTGTTGATGTTAAATTGAG+AGG - contig405end:25789-25808 None:intergenic 35.0%
GAAATATCATCATACCAGCA+CGG - contig405end:26575-26594 None:intergenic 35.0%
GATAGAGAGAAGACATCAAT+TGG + contig405end:25342-25361 MsG0080048703.01.T01:CDS 35.0%
GCTATAAGAACTTGAAGATC+TGG - contig405end:26003-26022 None:intergenic 35.0%
GTATAGCCTGGTAATACTTA+TGG + contig405end:26696-26715 MsG0080048703.01.T01:intron 35.0%
GTTGCATAGAACTATCTTCA+AGG - contig405end:25488-25507 None:intergenic 35.0%
GTTGTCTGAATTCTAAATCC+AGG - contig405end:26620-26639 None:intergenic 35.0%
TACCATTGAAGGAAATGCAT+TGG - contig405end:25688-25707 None:intergenic 35.0%
TAGCATTCTCAATAGTCTAC+AGG - contig405end:27290-27309 None:intergenic 35.0%
TATCTGTCAGGTATGAGAAA+TGG + contig405end:27662-27681 MsG0080048703.01.T01:intron 35.0%
TCAAGACCATAAGTATTACC+AGG - contig405end:26705-26724 None:intergenic 35.0%
TCCAAGACCATCATTTATGA+CGG + contig405end:26400-26419 MsG0080048703.01.T01:CDS 35.0%
TCCCTTGTACAATCTGAAAA+TGG + contig405end:25531-25550 MsG0080048703.01.T01:CDS 35.0%
TCTGTTGATCTTAATGTTCC+TGG + contig405end:25570-25589 MsG0080048703.01.T01:CDS 35.0%
TGATTTCACGACACAACATA+TGG - contig405end:26950-26969 None:intergenic 35.0%
TTAAGAATCTTCCCAAGAGA+TGG + contig405end:26056-26075 MsG0080048703.01.T01:CDS 35.0%
TTCCAATGCATTTCCTTCAA+TGG + contig405end:25683-25702 MsG0080048703.01.T01:CDS 35.0%
TTGTATTCTGCTGAAATGGA+GGG - contig405end:25641-25660 None:intergenic 35.0%
! AAATTGAGAGGTACAGATTC+CGG - contig405end:25777-25796 None:intergenic 35.0%
! ACTACATGGTTAGTTCATGT+AGG - contig405end:26820-26839 None:intergenic 35.0%
! ACTCTCTGTAGATTTTCTGA+TGG - contig405end:26254-26273 None:intergenic 35.0%
! ATAAATGATGGTCTTGGATG+TGG - contig405end:26398-26417 None:intergenic 35.0%
! ATCATTTATGACGGAGAGAA+GGG + contig405end:26409-26428 MsG0080048703.01.T01:CDS 35.0%
! CTCTCTGTAGATTTTCTGAT+GGG - contig405end:26253-26272 None:intergenic 35.0%
! GGATTTAGAATTCAGACAAC+AGG + contig405end:26620-26639 MsG0080048703.01.T01:intron 35.0%
! TATGTTGATGGACAGAATCT+CGG + contig405end:27775-27794 MsG0080048703.01.T01:CDS 35.0%
! TCCTTCAATGGTAAGTATTG+CGG + contig405end:25695-25714 MsG0080048703.01.T01:CDS 35.0%
! TCTTCAAGTTCTTATAGCTC+AGG + contig405end:26005-26024 MsG0080048703.01.T01:CDS 35.0%
! TTGGTGGTTAAGCTATATAG+TGG + contig405end:28053-28072 MsG0080048703.01.T01:three_prime_UTR 35.0%
!! CCCTATTTCTCTTTTATCTG+AGG + contig405end:27023-27042 MsG0080048703.01.T01:intron 35.0%
!! TGTTGATAACATGTCTTACG+AGG + contig405end:27428-27447 MsG0080048703.01.T01:CDS 35.0%
AACCCTGAGAAAATGAAGGA+GGG - contig405end:26361-26380 None:intergenic 40.0%
AATGACCCATCTACATCATC+CGG + contig405end:25755-25774 MsG0080048703.01.T01:CDS 40.0%
AATTTGCAAAACAACGGCCT+TGG + contig405end:27870-27889 MsG0080048703.01.T01:CDS 40.0%
ACATATTCCTCCTACGATCA+TGG - contig405end:27760-27779 None:intergenic 40.0%
ACTTGTTCTTCCATGATCGT+AGG + contig405end:27747-27766 MsG0080048703.01.T01:intron 40.0%
AGATTCCGGATGATGTAGAT+GGG - contig405end:25763-25782 None:intergenic 40.0%
AGCTGCTAACCTTAAATCCA+AGG - contig405end:25874-25893 None:intergenic 40.0%
ATTGCTAACTCATCTGATCG+CGG + contig405end:25267-25286 MsG0080048703.01.T01:CDS 40.0%
CATTACCCTTTGACAATGAG+GGG + contig405end:26468-26487 MsG0080048703.01.T01:CDS 40.0%
CTAGAACCCTGAGAAAATGA+AGG - contig405end:26365-26384 None:intergenic 40.0%
CTCCTATCAAAGTTTCGTAG+AGG - contig405end:25735-25754 None:intergenic 40.0%
CTCTCTCATTTAACGATCCT+TGG + contig405end:25854-25873 MsG0080048703.01.T01:intron 40.0%
CTGACTTCAACTTGGATTAC+AGG + contig405end:27506-27525 MsG0080048703.01.T01:intron 40.0%
CTTAATGTTCCTGGAAGCTT+AGG + contig405end:25579-25598 MsG0080048703.01.T01:CDS 40.0%
CTTCTCTCCGTCATAAATGA+TGG - contig405end:26410-26429 None:intergenic 40.0%
CTTGTATTCTGCTGAAATGG+AGG - contig405end:25642-25661 None:intergenic 40.0%
GATCGTTAAATGAGAGAGCT+GGG - contig405end:25852-25871 None:intergenic 40.0%
GGTAATGTTCGCAATGAATG+AGG - contig405end:26455-26474 None:intergenic 40.0%
GTAACACGGAAATCCTCTAA+AGG - contig405end:25615-25634 None:intergenic 40.0%
GTATTGCGGAAAATGTGGAA+AGG + contig405end:25709-25728 MsG0080048703.01.T01:CDS 40.0%
GTGCCCAATTTGCAAAACAA+CGG + contig405end:27864-27883 MsG0080048703.01.T01:CDS 40.0%
TATGCTGTACTTCTGCTTGA+AGG + contig405end:26544-26563 MsG0080048703.01.T01:intron 40.0%
TCAGCATCTGGTACTCATAA+TGG + contig405end:26314-26333 MsG0080048703.01.T01:CDS 40.0%
TCATGGTTAAATGTCCAGCT+GGG - contig405end:26227-26246 None:intergenic 40.0%
TCCGCAATACTTACCATTGA+AGG - contig405end:25699-25718 None:intergenic 40.0%
TCCGTCATAAATGATGGTCT+TGG - contig405end:26404-26423 None:intergenic 40.0%
TCGTAGGAGGAATATGTTGA+TGG + contig405end:27763-27782 MsG0080048703.01.T01:intron 40.0%
TCTAGCAATGTGAACAATGC+TGG + contig405end:26143-26162 MsG0080048703.01.T01:CDS 40.0%
TGACCTACATTTGCATTGTC+AGG + contig405end:27329-27348 MsG0080048703.01.T01:intron 40.0%
TGAGCTGATTGAGGGAAAAA+GGG - contig405end:26297-26316 None:intergenic 40.0%
TGTCGTGAAATCAGTATTCG+AGG + contig405end:26957-26976 MsG0080048703.01.T01:intron 40.0%
TTAAATGTCCAGCTGGGATT+AGG - contig405end:26221-26240 None:intergenic 40.0%
TTCATGGTTAAATGTCCAGC+TGG - contig405end:26228-26247 None:intergenic 40.0%
TTTCAGCCATGCCATGATAT+AGG - contig405end:27377-27396 None:intergenic 40.0%
TTTGACCCGTTCCTATATCA+TGG + contig405end:27363-27382 MsG0080048703.01.T01:CDS 40.0%
! AGGTGATTTGTCACCTTTAG+AGG + contig405end:25599-25618 MsG0080048703.01.T01:CDS 40.0%
! CATCATTTATGACGGAGAGA+AGG + contig405end:26408-26427 MsG0080048703.01.T01:CDS 40.0%
! GATTTTCTGATGGGACTTCA+TGG - contig405end:26244-26263 None:intergenic 40.0%
! GGTAAGTATTGCGGAAAATG+TGG + contig405end:25704-25723 MsG0080048703.01.T01:CDS 40.0%
! TCATTTATGACGGAGAGAAG+GGG + contig405end:26410-26429 MsG0080048703.01.T01:CDS 40.0%
! TTCAAGGGTCTTTCTTTTGC+AGG - contig405end:25472-25491 None:intergenic 40.0%
! TTGCTGATGAAGCACCTATT+TGG - contig405end:25384-25403 None:intergenic 40.0%
! TTGGATTTAAGGTTAGCAGC+TGG + contig405end:25873-25892 MsG0080048703.01.T01:intron 40.0%
!! AAGGCCGTTGTTTTGCAAAT+TGG - contig405end:27871-27890 None:intergenic 40.0%
!! AGGCCGTTGTTTTGCAAATT+GGG - contig405end:27870-27889 None:intergenic 40.0%
!! CGTTAGTTCTGACTTCAACT+TGG + contig405end:27498-27517 MsG0080048703.01.T01:intron 40.0%
ACAGTAACTGCATCACACAG+TGG + contig405end:27824-27843 MsG0080048703.01.T01:CDS 45.0%
ACTGTGTGATGCAGTTACTG+TGG - contig405end:27825-27844 None:intergenic 45.0%
AGAGAGCTGGGTATTTGATG+CGG - contig405end:25840-25859 None:intergenic 45.0%
AGCAATGTGAACAATGCTGG+AGG + contig405end:26146-26165 MsG0080048703.01.T01:CDS 45.0%
AGTTCTATGCAACTGTGTGC+TGG + contig405end:25495-25514 MsG0080048703.01.T01:CDS 45.0%
ATGAACATGCCTGCATCTTC+AGG + contig405end:26092-26111 MsG0080048703.01.T01:CDS 45.0%
ATTGAGGGAAAAAGGGACCA+GGG - contig405end:26290-26309 None:intergenic 45.0%
CAGATTCCGGATGATGTAGA+TGG - contig405end:25764-25783 None:intergenic 45.0%
CATACCTGACAGATACAGCA+AGG - contig405end:27657-27676 None:intergenic 45.0%
CCATGCCATGATATAGGAAC+GGG - contig405end:27371-27390 None:intergenic 45.0%
CGTATAGGAGATGTAAGCAC+TGG + contig405end:27549-27568 MsG0080048703.01.T01:CDS 45.0%
CTGAGCTGATTGAGGGAAAA+AGG - contig405end:26298-26317 None:intergenic 45.0%
CTGAGGGAGATACTCATCTT+CGG + contig405end:27040-27059 MsG0080048703.01.T01:intron 45.0%
GAACCCTGAGAAAATGAAGG+AGG - contig405end:26362-26381 None:intergenic 45.0%
GAAGATGCAGGCATGTTCAT+GGG - contig405end:26092-26111 None:intergenic 45.0%
GACAAATCACCTAAGCTTCC+AGG - contig405end:25591-25610 None:intergenic 45.0%
GCCATGCCATGATATAGGAA+CGG - contig405end:27372-27391 None:intergenic 45.0%
GGATCGTTAAATGAGAGAGC+TGG - contig405end:25853-25872 None:intergenic 45.0%
GGCCTCTACGAAACTTTGAT+AGG + contig405end:25730-25749 MsG0080048703.01.T01:CDS 45.0%
GTTTGAACTAGATCCGATCC+AGG - contig405end:26186-26205 None:intergenic 45.0%
TAGAGCTGCTAATCCTAGAG+TGG + contig405end:25977-25996 MsG0080048703.01.T01:CDS 45.0%
TGAAGATGCAGGCATGTTCA+TGG - contig405end:26093-26112 None:intergenic 45.0%
TGGGTATTTGATGCGGAGAA+GGG - contig405end:25833-25852 None:intergenic 45.0%
TGTTCTTCCATGATCGTAGG+AGG + contig405end:27750-27769 MsG0080048703.01.T01:intron 45.0%
TTGCTAACTCATCTGATCGC+GGG + contig405end:25268-25287 MsG0080048703.01.T01:CDS 45.0%
! ACAGGAATTGTTGGCATTGG+AGG + contig405end:27524-27543 MsG0080048703.01.T01:intron 45.0%
! AGGGTCTTTCTTTTGCAGGA+AGG - contig405end:25468-25487 None:intergenic 45.0%
! CGTTCCCAATCTAAGATGAG+AGG - contig405end:27997-28016 None:intergenic 45.0%
! GAAATGGAGGGCTAGTAACA+CGG - contig405end:25629-25648 None:intergenic 45.0%
! GGATTAGCAGCTCTATTCCA+CGG - contig405end:25972-25991 None:intergenic 45.0%
!! AATCTCGGTTTGCTGGATTG+TGG + contig405end:27790-27809 MsG0080048703.01.T01:CDS 45.0%
!! ATCTCGGTTTGCTGGATTGT+GGG + contig405end:27791-27810 MsG0080048703.01.T01:CDS 45.0%
AAAGGATGCATGTGCAGGGA+TGG - contig405end:25948-25967 None:intergenic 50.0%
AACTCATCTGATCGCGGGAA+AGG + contig405end:25273-25292 MsG0080048703.01.T01:CDS 50.0%
ACCAGATGCTGAGCTGATTG+AGG - contig405end:26306-26325 None:intergenic 50.0%
ACGGAAAAGGATGCATGTGC+AGG - contig405end:25953-25972 None:intergenic 50.0%
ACGTAGAGCAGCATTGCTGA+TGG - contig405end:27481-27500 None:intergenic 50.0%
AGGCATGTTCATGGGATGCT+CGG - contig405end:26084-26103 None:intergenic 50.0%
ATACCTCCTCCATCCTGGAT+CGG + contig405end:26170-26189 MsG0080048703.01.T01:CDS 50.0%
CCAGATGCTGAGCTGATTGA+GGG - contig405end:26305-26324 None:intergenic 50.0%
CCCGTTCCTATATCATGGCA+TGG + contig405end:27368-27387 MsG0080048703.01.T01:CDS 50.0%
CGCGGGAAAGGTAAAGAAAC+TGG + contig405end:25285-25304 MsG0080048703.01.T01:CDS 50.0%
CGGAAAAGGATGCATGTGCA+GGG - contig405end:25952-25971 None:intergenic 50.0%
CGTCTCCCCTCATTGTCAAA+GGG - contig405end:26476-26495 None:intergenic 50.0%
CTGAGAAAATGAAGGAGGGC+CGG - contig405end:26357-26376 None:intergenic 50.0%
CTGGGTATTTGATGCGGAGA+AGG - contig405end:25834-25853 None:intergenic 50.0%
CTTGAAGATCTGGCCACTCT+AGG - contig405end:25993-26012 None:intergenic 50.0%
GAACTAGATCCGATCCAGGA+TGG - contig405end:26182-26201 None:intergenic 50.0%
GAAGATGCATACCAACCTGC+AGG - contig405end:26125-26144 None:intergenic 50.0%
GAGTTTCAGAGTTCAGTCCC+TGG + contig405end:26270-26289 MsG0080048703.01.T01:CDS 50.0%
GATGCTCGGTACCATCTCTT+GGG - contig405end:26070-26089 None:intergenic 50.0%
GATTGAGGGAAAAAGGGACC+AGG - contig405end:26291-26310 None:intergenic 50.0%
GCAGCTCTATTCCACGGAAA+AGG - contig405end:25966-25985 None:intergenic 50.0%
GGTTCATGTCCTGAAGATGC+AGG - contig405end:26104-26123 None:intergenic 50.0%
GTGCTTCATCAGCAAGCTCT+GGG + contig405end:25389-25408 MsG0080048703.01.T01:CDS 50.0%
TCTATGCAACTGTGTGCTGG+AGG + contig405end:25498-25517 MsG0080048703.01.T01:CDS 50.0%
TCTTCAGGACATGAACCTGC+AGG + contig405end:26107-26126 MsG0080048703.01.T01:CDS 50.0%
! CGAACCTTGCTGTATCTGTC+AGG + contig405end:27650-27669 MsG0080048703.01.T01:CDS 50.0%
! GGCCCTCCTTCATTTTCTCA+GGG + contig405end:26356-26375 MsG0080048703.01.T01:CDS 50.0%
! GTACATGGCTTGGGAGATAG+TGG + contig405end:25411-25430 MsG0080048703.01.T01:CDS 50.0%
! TGCACATGCATCCTTTTCCG+TGG + contig405end:25952-25971 MsG0080048703.01.T01:CDS 50.0%
! TGGACAGAATCTCGGTTTGC+TGG + contig405end:27783-27802 MsG0080048703.01.T01:CDS 50.0%
! TTGGCATTGGAGGAGCGTAT+AGG + contig405end:27534-27553 MsG0080048703.01.T01:CDS 50.0%
! TTTATGACGGAGAGAAGGGG+TGG + contig405end:26413-26432 MsG0080048703.01.T01:CDS 50.0%
!! AAGCTCTGGGTACATGGCTT+GGG + contig405end:25402-25421 MsG0080048703.01.T01:CDS 50.0%
!! ATCAGCAAGCTCTGGGTACA+TGG + contig405end:25396-25415 MsG0080048703.01.T01:CDS 50.0%
!! GCATGCTTTGAAGCAAGCAC+AGG + contig405end:27264-27283 MsG0080048703.01.T01:intron 50.0%
AAGTCCTGCTAGCAATGCGG+AGG + contig405end:26862-26881 MsG0080048703.01.T01:CDS 55.0%
ACTCGTTGCCTAATCCCAGC+TGG + contig405end:26210-26229 MsG0080048703.01.T01:CDS 55.0%
AGCTGGGATTAGGCAACGAG+TGG - contig405end:26211-26230 None:intergenic 55.0%
AGTCCTGCTAGCAATGCGGA+GGG + contig405end:26863-26882 MsG0080048703.01.T01:CDS 55.0%
CAGGACATGAACCTGCAGGT+TGG + contig405end:26111-26130 MsG0080048703.01.T01:CDS 55.0%
CCCTCAATCAGCTCAGCATC+TGG + contig405end:26302-26321 MsG0080048703.01.T01:CDS 55.0%
CTAGATCCGATCCAGGATGG+AGG - contig405end:26179-26198 None:intergenic 55.0%
CTAGCAGGACTTGGCGAATC+TGG - contig405end:26854-26873 None:intergenic 55.0%
GAGAGATTCTCCTCGTCACG+AGG - contig405end:27896-27915 None:intergenic 55.0%
GCCAAGTCCTGCTAGCAATG+CGG + contig405end:26859-26878 MsG0080048703.01.T01:CDS 55.0%
GCGTCTCCCCTCATTGTCAA+AGG - contig405end:26477-26496 None:intergenic 55.0%
GCTTGAAGGATATGCCGTGC+TGG + contig405end:26558-26577 MsG0080048703.01.T01:intron 55.0%
GGATGCTCGGTACCATCTCT+TGG - contig405end:26071-26090 None:intergenic 55.0%
GGCCATTCCTCCTCTACTTC+CGG + contig405end:26335-26354 MsG0080048703.01.T01:CDS 55.0%
GGGTGAGAACTTACGAGCTG+AGG + contig405end:26884-26903 MsG0080048703.01.T01:CDS 55.0%
GGTGCTTCATCAGCAAGCTC+TGG + contig405end:25388-25407 MsG0080048703.01.T01:CDS 55.0%
TCCGCATTGCTAGCAGGACT+TGG - contig405end:26863-26882 None:intergenic 55.0%
TTGACAATGAGGGGAGACGC+CGG + contig405end:26477-26496 MsG0080048703.01.T01:CDS 55.0%
! CGGCCCTCCTTCATTTTCTC+AGG + contig405end:26355-26374 MsG0080048703.01.T01:CDS 55.0%
!! CAAGCTCTGGGTACATGGCT+TGG + contig405end:25401-25420 MsG0080048703.01.T01:CDS 55.0%
!! GAGACGCCGGCTTATATCTG+AGG + contig405end:26490-26509 MsG0080048703.01.T01:CDS 55.0%
AGGTTAGCAGCTGGAGCAGC+TGG + contig405end:25882-25901 MsG0080048703.01.T01:intron 60.0%
GAGGCATACCTCCTCCATCC+TGG + contig405end:26165-26184 MsG0080048703.01.T01:CDS 60.0%
GATCCGATCCAGGATGGAGG+AGG - contig405end:26176-26195 None:intergenic 60.0%
GCATGTGCAGGGATGGTGAC+TGG - contig405end:25941-25960 None:intergenic 60.0%
GGCCGGAAGTAGAGGAGGAA+TGG - contig405end:26340-26359 None:intergenic 60.0%
GTCCTGCTAGCAATGCGGAG+GGG + contig405end:26864-26883 MsG0080048703.01.T01:CDS 60.0%
TGAAGGAGGGCCGGAAGTAG+AGG - contig405end:26348-26367 None:intergenic 60.0%
TTCTCCTCGTCACGAGGCCA+AGG - contig405end:27890-27909 None:intergenic 60.0%
AGGAGGGCCGGAAGTAGAGG+AGG - contig405end:26345-26364 None:intergenic 65.0%
CACCCCTCCGCATTGCTAGC+AGG - contig405end:26869-26888 None:intergenic 65.0%
ACGGCCTTGGCCTCGTGACG+AGG + contig405end:27883-27902 MsG0080048703.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
contig405end gene 25258 28182 25258 ID=MsG0080048703.01;Name=MsG0080048703.01
contig405end mRNA 25258 28182 25258 ID=MsG0080048703.01.T01;Parent=MsG0080048703.01;Name=MsG0080048703.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.8|0.66|1|1|0.83|6|282|532
contig405end exon 25258 25810 25258 ID=MsG0080048703.01.T01:exon:3509;Parent=MsG0080048703.01.T01
contig405end exon 25892 26511 25892 ID=MsG0080048703.01.T01:exon:3510;Parent=MsG0080048703.01.T01
contig405end exon 26855 26905 26855 ID=MsG0080048703.01.T01:exon:3511;Parent=MsG0080048703.01.T01
contig405end exon 27351 27449 27351 ID=MsG0080048703.01.T01:exon:3512;Parent=MsG0080048703.01.T01
contig405end exon 27528 27671 27528 ID=MsG0080048703.01.T01:exon:3513;Parent=MsG0080048703.01.T01
contig405end exon 27769 28182 27769 ID=MsG0080048703.01.T01:exon:3514;Parent=MsG0080048703.01.T01
contig405end CDS 25258 25810 25258 ID=MsG0080048703.01.T01:cds;Parent=MsG0080048703.01.T01
contig405end CDS 25892 26511 25892 ID=MsG0080048703.01.T01:cds;Parent=MsG0080048703.01.T01
contig405end CDS 26855 26905 26855 ID=MsG0080048703.01.T01:cds;Parent=MsG0080048703.01.T01
contig405end CDS 27351 27449 27351 ID=MsG0080048703.01.T01:cds;Parent=MsG0080048703.01.T01
contig405end CDS 27528 27671 27528 ID=MsG0080048703.01.T01:cds;Parent=MsG0080048703.01.T01
contig405end CDS 27769 27900 27769 ID=MsG0080048703.01.T01:cds;Parent=MsG0080048703.01.T01
contig405end three_prime_UTR 27901 28182 27901 ID=MsG0080048703.01.T01:three_prime_utr;Parent=MsG0080048703.01.T01
Gene Sequence

>MsG0080048703.01.T01

ATGGAGCACATTGCTAACTCATCTGATCGCGGGAAAGGTAAAGAAACTGGTAACGGTGTTAATAACAACGATCCTTTTGGATTAGATAGAGAGAAGACATCAATTGGCAGTTTCTTCATTCAACCAAATAGGTGCTTCATCAGCAAGCTCTGGGTACATGGCTTGGGAGATAGTGGCAGTTCAAGTTCTTCTTTAGCTAATTGGGGTCCTTCCTGCAAAAGAAAGACCCTTGAAGATAGTTCTATGCAACTGTGTGCTGGAGGAAGCTCGAGTTCCCTTGTACAATCTGAAAATGGTTACTGGCTTACTGATTCTGTTGATCTTAATGTTCCTGGAAGCTTAGGTGATTTGTCACCTTTAGAGGATTTCCGTGTTACTAGCCCTCCATTTCAGCAGAATACAAGAAATGAAGCGAGACAAGAAGCTTCCAATGCATTTCCTTCAATGGTAAGTATTGCGGAAAATGTGGAAAGGCCTCTACGAAACTTTGATAGGAGAATGACCCATCTACATCATCCGGAATCTGTACCTCTCAATTTAACATCAACAGGGACTGGAGCAGCTGGAGTAACAGCTGCTAATTCTGCTGTGACACAAAACCAGTCACCATCCCTGCACATGCATCCTTTTCCGTGGAATAGAGCTGCTAATCCTAGAGTGGCCAGATCTTCAAGTTCTTATAGCTCAGGAGAAAGAGCAGTACGTGATGATTTTAATTTAAGAATCTTCCCAAGAGATGGTACCGAGCATCCCATGAACATGCCTGCATCTTCAGGACATGAACCTGCAGGTTGGTATGCATCTTCTAGCAATGTGAACAATGCTGGAGGCATACCTCCTCCATCCTGGATCGGATCTAGTTCAAACGTCCACTCGTTGCCTAATCCCAGCTGGACATTTAACCATGAAGTCCCATCAGAAAATCTACAGAGAGTTTCAGAGTTCAGTCCCTGGTCCCTTTTTCCCTCAATCAGCTCAGCATCTGGTACTCATAATGGCCATTCCTCCTCTACTTCCGGCCCTCCTTCATTTTCTCAGGGTTCTAGCAGTAATCAACCACATCCAAGACCATCATTTATGACGGAGAGAAGGGGTGGTGATGTTCTCTCTGCTCCTCATTCATTGCGAACATTACCCTTTGACAATGAGGGGAGACGCCGGCTTATATCTGAGATTCGCCAAGTCCTGCTAGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCGTTCCTATATCATGGCATGGCTGAAATGCACGACAGACACAGAGAAATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGATGTAAGCACTGGACTGAGTGAAGATATAATTAATAAGTTGATGAAACAGCGATTTTACATGTCTCTCATGACAGAGTCTTCTTCTGATCTCGAACCTTGCTGTATCTGTCAGGAGGAATATGTTGATGGACAGAATCTCGGTTTGCTGGATTGTGGGCACGAGTTCCACAGTAACTGCATCACACAGTGGCTAATGCAGAAGAATCTGTGCCCAATTTGCAAAACAACGGCCTTGGCCTCGTGA
Protein sequence

>MsG0080048703.01.T01

MEHIANSSDRGKGKETGNGVNNNDPFGLDREKTSIGSFFIQPNRCFISKLWVHGLGDSGSSSSSLANWGPSCKRKTLEDSSMQLCAGGSSSSLVQSENGYWLTDSVDLNVPGSLGDLSPLEDFRVTSPPFQQNTRNEARQEASNAFPSMVSIAENVERPLRNFDRRMTHLHHPESVPLNLTSTGTGAAGVTAANSAVTQNQSPSLHMHPFPWNRAANPRVARSSSSYSSGERAVRDDFNLRIFPRDGTEHPMNMPASSGHEPAGWYASSSNVNNAGGIPPPSWIGSSSNVHSLPNPSWTFNHEVPSENLQRVSEFSPWSLFPSISSASGTHNGHSSSTSGPPSFSQGSSSNQPHPRPSFMTERRGGDVLSAPHSLRTLPFDNEGRRRLISEIRQVLLAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDIINKLMKQRFYMSLMTESSSDLEPCCICQEEYVDGQNLGLLDCGHEFHSNCITQWLMQKNLCPICKTTALAS*