AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006079.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006079.01.T02 MTR_1g113850 99.057 106 1 0 48 153 403 508 3.46e-64 211
MsG0180006079.01.T02 MTR_1g113850 78.000 50 11 0 1 50 122 171 3.46e-17 78.2
MsG0180006079.01.T02 MTR_3g104990 57.746 71 29 1 50 119 302 372 1.60e-21 90.5
MsG0180006079.01.T02 MTR_3g104940 57.812 64 27 0 56 119 310 373 8.02e-21 88.6
MsG0180006079.01.T02 MTR_3g104920 55.738 61 27 0 59 119 290 350 3.88e-18 80.9
MsG0180006079.01.T02 MTR_3g104920 55.738 61 27 0 59 119 278 338 4.10e-18 80.9
MsG0180006079.01.T02 MTR_8g071250 50.000 66 33 0 52 117 234 299 1.74e-17 79.0
MsG0180006079.01.T02 MTR_2g041220 49.206 63 32 0 58 120 294 356 3.00e-17 78.2
MsG0180006079.01.T03 MTR_1g113850 98.039 153 1 1 1 153 520 670 3.39e-100 308
MsG0180006079.01.T03 MTR_2g041220 45.000 120 62 2 33 149 388 506 4.52e-25 100
MsG0180006079.01.T03 MTR_8g071250 41.803 122 67 2 29 149 331 449 8.09e-19 82.4
MsG0180006079.01.T03 MTR_3g104920 36.885 122 70 4 33 149 368 487 1.65e-13 67.4
MsG0180006079.01.T03 MTR_3g104920 36.885 122 70 4 33 149 380 499 1.17e-12 64.7
MsG0180006079.01.T03 MTR_3g104940 32.168 143 88 5 11 149 385 522 9.10e-12 62.4
MsG0180006079.01.T03 MTR_3g104990 33.607 122 74 4 33 149 402 521 2.52e-11 60.8
MsG0180006079.01.T01 MTR_1g113850 95.588 136 6 0 6 141 741 876 4.12e-91 283
MsG0180006079.01.T01 MTR_2g041220 56.618 136 59 0 6 141 579 714 2.80e-51 174
MsG0180006079.01.T01 MTR_3g104990 50.000 140 70 0 2 141 590 729 1.39e-46 161
MsG0180006079.01.T01 MTR_3g104920 48.936 141 72 0 2 142 568 708 3.03e-46 160
MsG0180006079.01.T01 MTR_3g104920 48.936 141 72 0 2 142 556 696 3.17e-46 160
MsG0180006079.01.T01 MTR_3g104940 48.571 140 72 0 2 141 591 730 1.94e-45 157
MsG0180006079.01.T01 MTR_8g071250 52.143 140 67 0 2 141 518 657 2.39e-45 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006079.01.T02 AT2G17010 71.698 106 30 0 48 153 401 506 4.07e-44 154
MsG0180006079.01.T02 AT2G17010 71.698 106 30 0 48 153 401 506 1.24e-43 154
MsG0180006079.01.T02 AT2G17000 60.377 106 42 0 48 153 334 439 1.62e-39 142
MsG0180006079.01.T02 AT2G17000 60.377 106 42 0 48 153 334 439 1.63e-39 142
MsG0180006079.01.T02 AT3G14810 62.857 105 38 1 48 151 370 474 1.29e-38 139
MsG0180006079.01.T02 AT1G78610 62.385 109 40 1 50 157 345 453 3.29e-34 127
MsG0180006079.01.T02 AT1G53470 63.830 94 31 1 48 141 360 450 3.90e-33 124
MsG0180006079.01.T02 AT5G12080 46.154 78 36 1 56 133 278 349 1.79e-17 79.0
MsG0180006079.01.T02 AT5G12080 46.154 78 36 1 56 133 278 349 1.79e-17 79.0
MsG0180006079.01.T02 AT5G12080 46.154 78 36 1 56 133 278 349 1.79e-17 79.0
MsG0180006079.01.T02 AT5G19520 54.098 61 28 0 59 119 293 353 6.58e-17 77.4
MsG0180006079.01.T02 AT5G19520 54.098 61 28 0 59 119 293 353 6.58e-17 77.4
MsG0180006079.01.T02 AT3G14810 61.017 59 22 1 94 151 383 441 6.70e-17 77.4
MsG0180006079.01.T03 AT1G78610 60.927 151 56 2 3 153 445 592 5.76e-51 174
MsG0180006079.01.T03 AT2G17010 58.000 150 54 2 4 153 510 650 7.02e-50 171
MsG0180006079.01.T03 AT2G17010 58.333 144 53 1 4 147 510 646 9.56e-50 169
MsG0180006079.01.T03 AT2G17000 58.170 153 50 3 6 153 440 583 1.29e-46 162
MsG0180006079.01.T03 AT2G17000 58.170 153 50 3 6 153 440 583 1.30e-46 162
MsG0180006079.01.T03 AT1G53470 58.065 155 54 4 2 153 474 620 2.37e-46 161
MsG0180006079.01.T03 AT3G14810 59.350 123 50 0 27 149 495 617 9.54e-44 154
MsG0180006079.01.T03 AT3G14810 59.504 121 49 0 27 147 462 582 6.00e-43 151
MsG0180006079.01.T03 AT5G12080 40.496 121 67 2 33 149 372 491 2.03e-20 87.0
MsG0180006079.01.T03 AT5G12080 40.496 121 67 2 33 149 372 491 2.03e-20 87.0
MsG0180006079.01.T03 AT5G12080 40.496 121 67 2 33 149 372 491 2.03e-20 87.0
MsG0180006079.01.T03 AT5G19520 34.400 125 76 4 33 155 383 503 1.60e-13 67.4
MsG0180006079.01.T03 AT5G19520 34.400 125 76 4 33 155 383 503 1.60e-13 67.4
MsG0180006079.01.T01 AT3G14810 72.059 136 38 0 6 141 655 790 3.69e-71 229
MsG0180006079.01.T01 AT3G14810 72.059 136 38 0 6 141 690 825 6.87e-71 228
MsG0180006079.01.T01 AT1G78610 69.853 136 41 0 6 141 663 798 3.73e-68 221
MsG0180006079.01.T01 AT1G53470 66.912 136 45 0 6 141 691 826 1.39e-65 214
MsG0180006079.01.T01 AT2G17010 63.830 141 51 0 1 141 716 856 1.95e-62 206
MsG0180006079.01.T01 AT2G17000 56.028 141 62 0 1 141 649 789 1.49e-53 181
MsG0180006079.01.T01 AT2G17000 56.028 141 62 0 1 141 649 789 1.52e-53 181
MsG0180006079.01.T01 AT5G12080 45.714 140 76 0 2 141 560 699 4.77e-44 154
MsG0180006079.01.T01 AT5G12080 45.714 140 76 0 2 141 560 699 4.77e-44 154
MsG0180006079.01.T01 AT5G12080 45.714 140 76 0 2 141 560 699 4.77e-44 154
MsG0180006079.01.T01 AT5G19520 45.926 135 73 0 2 136 568 702 1.87e-40 144
MsG0180006079.01.T01 AT5G19520 45.926 135 73 0 2 136 568 702 1.87e-40 144

Find 112 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCTTCAAATAGATTTA+TGG 0.106249 1:+99821610 None:intergenic
GCCATTTCATACTGGTTATT+TGG 0.160086 1:-99820986 MsG0180006079.01.T01:five_prime_UTR
GGTTATTTGGCTCTTGATAT+TGG 0.220545 1:-99820973 MsG0180006079.01.T01:five_prime_UTR
TTTGAAGGAGCGTCTGATTC+TGG 0.222745 1:-99821599 MsG0180006079.01.T01:five_prime_UTR
GTCTTGGTTGCATTTATATT+CGG 0.298230 1:-99820907 MsG0180006079.01.T01:five_prime_UTR
TTGTCCAGGTTAATGCCTTC+AGG 0.299126 1:-99821090 MsG0180006079.01.T01:intron
TCAATATGTGACCAAGGTTT+TGG 0.301334 1:-99822854 MsG0180006079.01.T01:five_prime_UTR
AACACTCTCGGGGCCGCCTT+TGG 0.329276 1:-99822701 MsG0180006079.01.T01:five_prime_UTR
TATGTCATTGGACATGGATT+TGG 0.336553 1:-99823729 MsG0180006079.01.T01:five_prime_UTR
GCAAATCCGCGTTGAAGAAC+TGG 0.338974 1:-99821568 MsG0180006079.01.T01:five_prime_UTR
GTTGAAAACTCTAGTGGTTA+AGG 0.339854 1:-99822800 MsG0180006079.01.T01:five_prime_UTR
ATGTGAGTACATACTTTGAT+AGG 0.348611 1:-99822759 MsG0180006079.01.T01:five_prime_UTR
TTAGTAGCAAGGACACTGTT+AGG 0.356809 1:+99820623 None:intergenic
ACAATCACAAATTGAGTAGA+AGG 0.360639 1:-99820118 MsG0180006079.01.T01:three_prime_UTR
TTTATGTAAAGAGTTTCTTA+TGG 0.381078 1:-99820015 MsG0180006079.01.T01:three_prime_UTR
AAGTTTGTTCACTGCGGTTT+TGG 0.385413 1:+99821033 None:intergenic
CTGTTTCTTGGTGGGTACTT+TGG 0.387096 1:-99822830 MsG0180006079.01.T01:five_prime_UTR
TTCACCGTTTATAGTCTTGA+AGG 0.388017 1:-99820357 MsG0180006079.01.T01:CDS
AACCTTCCACTCTTGATGTT+AGG 0.390437 1:+99822572 None:intergenic
GCCAAATAACCAGTATGAAA+TGG 0.402308 1:+99820985 None:intergenic
TCTTAGTTGCCATTTCATAC+TGG 0.411415 1:-99820994 MsG0180006079.01.T01:five_prime_UTR
ATAAATCAAAGAGTTTCTAT+TGG 0.418489 1:-99819944 MsG0180006079.01.T01:three_prime_UTR
CATCTATCTCCCACATCAAA+TGG 0.420933 1:+99820833 None:intergenic
TTGAAGGAGCGTCTGATTCT+GGG 0.423129 1:-99821598 MsG0180006079.01.T01:five_prime_UTR
TTAGGAAGGCACTAGCTCTT+AGG 0.429966 1:+99822590 None:intergenic
ACTCTCGGGGCCGCCTTTGG+TGG 0.444265 1:-99822698 MsG0180006079.01.T01:five_prime_UTR
TGTGAGCTCACAACTTGTCT+TGG 0.453149 1:-99820923 MsG0180006079.01.T01:five_prime_UTR
TGATCCTTCAAGACTATAAA+CGG 0.453207 1:+99820353 None:intergenic
TAACAGTGTCCTTGCTACTA+AGG 0.454493 1:-99820621 MsG0180006079.01.T01:CDS
GATTAGCTTGATATCTACTA+AGG 0.455955 1:-99819981 MsG0180006079.01.T01:three_prime_UTR
TGTCCAGGTTAATGCCTTCA+GGG 0.458204 1:-99821089 MsG0180006079.01.T01:intron
ACATGGTTAAAGTGGCAATC+TGG 0.459492 1:-99820319 MsG0180006079.01.T01:CDS
AAAACCATAAATCTATTTGA+AGG 0.473072 1:-99821614 MsG0180006079.01.T01:five_prime_UTR
CGAGTTGAAAGTTAGTTTCG+AGG 0.482005 1:-99823624 MsG0180006079.01.T01:five_prime_UTR
TTTCAGGTGGGGTAGCTACA+TGG 0.484332 1:+99820543 None:intergenic
ATTATCGTATCTCAGAAATA+CGG 0.486565 1:+99820661 None:intergenic
TCAATAGAATCTCCCATGTC+AGG 0.487717 1:+99820575 None:intergenic
CGGAAAGTTAACGCCGGTGG+AGG 0.491627 1:-99823669 MsG0180006079.01.T01:five_prime_UTR
TCAGTAAGGTGTTGGATAAG+AGG 0.493049 1:+99819871 None:intergenic
CTGATCGTCTTCCAGCTAGT+TGG 0.498824 1:-99820144 MsG0180006079.01.T01:three_prime_UTR
TCGAAAGGCGGAAGAGGAAG+AGG 0.498977 1:-99822671 MsG0180006079.01.T01:five_prime_UTR
AGAGGAAAGGCTTGCTGATG+AGG 0.500044 1:-99822653 MsG0180006079.01.T01:five_prime_UTR
TGGAAGTTCATTCTATGAGT+TGG 0.503678 1:+99820296 None:intergenic
ATCCCATTCGAATTTGAAGC+TGG 0.503839 1:+99823600 None:intergenic
GGAGATTCGAAAGGCGGAAG+AGG 0.504692 1:-99822677 MsG0180006079.01.T01:five_prime_UTR
GCACTAGCTCTTAGGTCAGC+AGG 0.507575 1:+99822598 None:intergenic
GACCAGCTTCAAATTCGAAT+GGG 0.508508 1:-99823602 MsG0180006079.01.T01:five_prime_UTR
TCAATTGAACATGGTTAAAG+TGG 0.509960 1:-99820327 MsG0180006079.01.T01:CDS
AGGTTAATGCCTTCAGGGAG+AGG 0.510601 1:-99821084 MsG0180006079.01.T01:five_prime_UTR
GTTTGTGATCGAAACACTCT+CGG 0.513851 1:-99822713 MsG0180006079.01.T01:five_prime_UTR
GTGATTGTTGTCCAACTAGC+TGG 0.516994 1:+99820133 None:intergenic
TAGTAGCAAGGACACTGTTA+GGG 0.522100 1:+99820624 None:intergenic
ATAAAACGCATTAAGTCCTC+AGG 0.526910 1:+99821656 None:intergenic
GTTCAGAAGTTGCAGAATGC+CGG 0.537436 1:-99822631 MsG0180006079.01.T01:five_prime_UTR
ATGGAGGAGCTTCAGAATGA+AGG 0.543397 1:-99823704 MsG0180006079.01.T01:five_prime_UTR
GGACATGGATTTGGAGATGG+AGG 0.548013 1:-99823720 MsG0180006079.01.T01:five_prime_UTR
ACTACGGTAGAAATTATGTA+TGG 0.549810 1:+99820598 None:intergenic
ACATCAAGAGTGGAAGGTTG+AGG 0.551793 1:-99822568 MsG0180006079.01.T01:five_prime_UTR
AACTCGCGTTGAATCACCGT+GGG 0.553700 1:+99823641 None:intergenic
TTTGTGATCGAAACACTCTC+GGG 0.554279 1:-99822712 MsG0180006079.01.T01:five_prime_UTR
GCCTTTCGAATCTCCACCAA+AGG 0.555304 1:+99822685 None:intergenic
AATGAAGGTAACGTCGCTGA+CGG 0.565304 1:-99823689 MsG0180006079.01.T01:five_prime_UTR
GGACCAGCTTCAAATTCGAA+TGG 0.566244 1:-99823603 MsG0180006079.01.T01:five_prime_UTR
CAGTTTCATTGATAACAAGA+AGG 0.567068 1:-99820393 MsG0180006079.01.T01:CDS
ACCGTGGGAGATTCCTCCAC+CGG 0.568309 1:+99823656 None:intergenic
CAAATCCGCGTTGAAGAACT+GGG 0.568926 1:-99821567 MsG0180006079.01.T01:five_prime_UTR
TTCCACTCTTGATGTTAGGA+AGG 0.572685 1:+99822576 None:intergenic
TTGATAACAAGAAGGAGCAC+TGG 0.574489 1:-99820385 MsG0180006079.01.T01:CDS
ATTGGACATGGATTTGGAGA+TGG 0.578623 1:-99823723 MsG0180006079.01.T01:five_prime_UTR
TATGTATGGCCTTAGTAGCA+AGG 0.582004 1:+99820612 None:intergenic
GCCTTTGGTGGAGATTCGAA+AGG 0.585486 1:-99822686 MsG0180006079.01.T01:five_prime_UTR
TTCAAGACTATAAACGGTGA+AGG 0.586497 1:+99820359 None:intergenic
TTCCTAACATCAAGAGTGGA+AGG 0.587048 1:-99822574 MsG0180006079.01.T01:five_prime_UTR
ATGTGAAATTGATGCGACCC+AGG 0.595144 1:-99820813 MsG0180006079.01.T01:intron
CAAGAAACAGACCAAAACCT+TGG 0.596695 1:+99822843 None:intergenic
TCTTGGTGGGTACTTTGGTG+TGG 0.598050 1:-99822825 MsG0180006079.01.T01:five_prime_UTR
AAACCTTGGTCACATATTGA+AGG 0.599670 1:+99822857 None:intergenic
TGTAATGCATCCATTTGATG+TGG 0.600406 1:-99820843 MsG0180006079.01.T01:CDS
TTTCTACCGTAGTCCTGACA+TGG 0.601376 1:-99820588 MsG0180006079.01.T01:CDS
TTTCGAATCTCCACCAAAGG+CGG 0.604367 1:+99822688 None:intergenic
ACATGAGGCTACTAAGTACA+TGG 0.605980 1:+99820085 None:intergenic
TAGAATGAACTTCCAAGACA+TGG 0.607383 1:-99820288 MsG0180006079.01.T01:CDS
AATCTCCCATGTCAGGACTA+CGG 0.611921 1:+99820582 None:intergenic
AAGCGCTCTCCTCTCCCTGA+AGG 0.613289 1:+99821075 None:intergenic
AGCTGGAAGACGATCAGAAG+TGG 0.616809 1:+99820150 None:intergenic
AGGCGGAAGAGGAAGAGGAA+AGG 0.622102 1:-99822666 MsG0180006079.01.T01:five_prime_UTR
TGCCTTCCTAACATCAAGAG+TGG 0.624077 1:-99822578 MsG0180006079.01.T01:five_prime_UTR
GGAAGACGATCAGAAGTGGT+AGG 0.626699 1:+99820154 None:intergenic
GTAATGCATCCATTTGATGT+GGG 0.631740 1:-99820842 MsG0180006079.01.T01:CDS
GTGGTTGTTGAAAACTCTAG+TGG 0.639430 1:-99822806 MsG0180006079.01.T01:five_prime_UTR
CAATCACAAATTGAGTAGAA+GGG 0.641112 1:-99820117 MsG0180006079.01.T01:three_prime_UTR
GCTCTAACATTAATGTCGAG+AGG 0.642384 1:+99820181 None:intergenic
GTCAGCAGGTATGCTAACAC+CGG 0.644403 1:+99822612 None:intergenic
CTTAGTAGCCTCATGTTGCG+TGG 0.644679 1:-99820078 MsG0180006079.01.T01:three_prime_UTR
ACATAATGCCACGCAACATG+AGG 0.644692 1:+99820070 None:intergenic
TTTGGTGGAGATTCGAAAGG+CGG 0.649479 1:-99822683 MsG0180006079.01.T01:five_prime_UTR
CCTGCTAAAATGTAACACTT+CGG 0.652616 1:+99820044 None:intergenic
TGTCCTTCAATATGTGACCA+AGG 0.652704 1:-99822860 MsG0180006079.01.T01:five_prime_UTR
GCCGGTGGAGGAATCTCCCA+CGG 0.653244 1:-99823657 MsG0180006079.01.T01:five_prime_UTR
TGACGGAAAGTTAACGCCGG+TGG 0.654507 1:-99823672 MsG0180006079.01.T01:five_prime_UTR
TTCTACCGTAGTCCTGACAT+GGG 0.663692 1:-99820587 MsG0180006079.01.T01:CDS
GGATCACGATCAATTGAACA+TGG 0.664955 1:-99820336 MsG0180006079.01.T01:CDS
CTGCAGGTTTATATATCCTG+AGG 0.668623 1:-99821672 MsG0180006079.01.T01:intron
TAATGTCGAGAGGCATGAGA+CGG 0.670724 1:+99820191 None:intergenic
ATCGTATCTCAGAAATACGG+TGG 0.688391 1:+99820664 None:intergenic
TCGATGAAGTTTGTTCACTG+CGG 0.690334 1:+99821027 None:intergenic
CGCTGACGGAAAGTTAACGC+CGG 0.693881 1:-99823675 MsG0180006079.01.T01:five_prime_UTR
TTGTGATCGAAACACTCTCG+GGG 0.699008 1:-99822711 MsG0180006079.01.T01:five_prime_UTR
CAACTCGCGTTGAATCACCG+TGG 0.722386 1:+99823640 None:intergenic
TGAGGCTACTAAGTACATGG+TGG 0.727802 1:+99820088 None:intergenic
ATCCGCGTTGAAGAACTGGG+TGG 0.755991 1:-99821564 MsG0180006079.01.T01:intron
TACCACCCAGTTCTTCAACG+CGG 0.758211 1:+99821562 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACCATAAATCTATTTGA+AGG - Chr1:99822120-99822139 MsG0180006079.01.T01:intron 20.0%
!! AAAACTCAAAAGACATAATT+AGG - Chr1:99821694-99821713 MsG0180006079.01.T01:intron 20.0%
!! ATAAATCAAAGAGTTTCTAT+TGG - Chr1:99823790-99823809 MsG0180006079.01.T01:five_prime_UTR 20.0%
!! ATGAAAATAAACCAAATAGA+AGG + Chr1:99821729-99821748 None:intergenic 20.0%
!! CAAATATGCAAAGATAATAA+AGG + Chr1:99823276-99823295 None:intergenic 20.0%
!! GGTTTATCTAATATATACTA+CGG + Chr1:99822375-99822394 None:intergenic 20.0%
!! TATGTCATATAAATCATGAT+TGG + Chr1:99821541-99821560 None:intergenic 20.0%
!! TATTATCTTTGCATATTTGT+TGG - Chr1:99823277-99823296 MsG0180006079.01.T01:five_prime_UTR 20.0%
!! TGAAAATAAACCAAATAGAA+GGG + Chr1:99821728-99821747 None:intergenic 20.0%
!! TTTATGTAAAGAGTTTCTTA+TGG - Chr1:99823719-99823738 MsG0180006079.01.T01:five_prime_UTR 20.0%
!!! GTTGAGTTTGATTTAATTAT+TGG - Chr1:99820565-99820584 MsG0180006079.01.T01:CDS 20.0%
! AAACAAAATCAAAAGTAACC+AGG + Chr1:99822553-99822572 None:intergenic 25.0%
! AAACAACACTAAAGAAGAAA+AGG + Chr1:99822243-99822262 None:intergenic 25.0%
! AAATAAAATGACAGAGAGAA+AGG + Chr1:99822025-99822044 None:intergenic 25.0%
! AGGAAACATATGAAATTACA+CGG + Chr1:99822223-99822242 None:intergenic 25.0%
! ATGATTCTTGTTCTAATATG+TGG - Chr1:99820664-99820683 MsG0180006079.01.T01:CDS 25.0%
! ATTATCGTATCTCAGAAATA+CGG + Chr1:99823076-99823095 None:intergenic 25.0%
! GAAAATAAACCAAATAGAAG+GGG + Chr1:99821727-99821746 None:intergenic 25.0%
! TAAAACTAAGTCCAGATTAA+TGG - Chr1:99820371-99820390 MsG0180006079.01.T01:CDS 25.0%
! TAAGAAAACATTTCAGTCTT+TGG - Chr1:99820529-99820548 MsG0180006079.01.T01:CDS 25.0%
! TAATACCAAGAGAAAGAAAT+AGG + Chr1:99821660-99821679 None:intergenic 25.0%
! TACAAATGCATAAAGTATAC+AGG + Chr1:99821591-99821610 None:intergenic 25.0%
! TACATGTAATAAATGACAAG+TGG - Chr1:99821983-99822002 MsG0180006079.01.T01:intron 25.0%
! TATGAAGAGGTTAATGAATA+TGG - Chr1:99821344-99821363 MsG0180006079.01.T01:intron 25.0%
! TTATCTAATATATACTACGG+CGG + Chr1:99822372-99822391 None:intergenic 25.0%
!! AATGTTTTCTTATACTCATC+TGG + Chr1:99820521-99820540 None:intergenic 25.0%
!! TATCAAATTTTGCCTCTAAA+AGG + Chr1:99822279-99822298 None:intergenic 25.0%
!! TTGTAGTCAATAACGATTTT+AGG + Chr1:99823319-99823338 None:intergenic 25.0%
AAATCTTTCAGAATGTTGCT+AGG - Chr1:99821478-99821497 MsG0180006079.01.T01:intron 30.0%
ACAAATCAGAAGTGAAAATG+AGG - Chr1:99821437-99821456 MsG0180006079.01.T01:intron 30.0%
ACAATCACAAATTGAGTAGA+AGG - Chr1:99823616-99823635 MsG0180006079.01.T01:five_prime_UTR 30.0%
ACTACGGTAGAAATTATGTA+TGG + Chr1:99823139-99823158 None:intergenic 30.0%
AGAGGTTAATGAATATGGTT+CGG - Chr1:99821349-99821368 MsG0180006079.01.T01:intron 30.0%
AGCTCACAAAAAGAAGAATT+TGG + Chr1:99822799-99822818 None:intergenic 30.0%
ATGTGAGTACATACTTTGAT+AGG - Chr1:99820975-99820994 MsG0180006079.01.T01:five_prime_UTR 30.0%
CAATCACAAATTGAGTAGAA+GGG - Chr1:99823617-99823636 MsG0180006079.01.T01:five_prime_UTR 30.0%
CATGGAGAAAAAGATATATC+AGG - Chr1:99823464-99823483 MsG0180006079.01.T01:five_prime_UTR 30.0%
CCAAGAAATCTGATGATAAT+GGG - Chr1:99821247-99821266 MsG0180006079.01.T01:intron 30.0%
CTCAATTGATTATGTCACAT+AGG + Chr1:99821913-99821932 None:intergenic 30.0%
CTTTCTCTTGGTATTATGTA+TGG - Chr1:99821664-99821683 MsG0180006079.01.T01:five_prime_UTR 30.0%
GAATTTCCTATTGAGAAAGA+GGG - Chr1:99820737-99820756 MsG0180006079.01.T01:intron 30.0%
GGTGAGTAAAACTAGATTAA+TGG + Chr1:99821520-99821539 None:intergenic 30.0%
GTCTTGGTTGCATTTATATT+CGG - Chr1:99822827-99822846 MsG0180006079.01.T01:five_prime_UTR 30.0%
TACAACAAGTGAATAATGTC+AGG + Chr1:99822340-99822359 None:intergenic 30.0%
TAGAGATATAGACATTACCT+GGG + Chr1:99822941-99822960 None:intergenic 30.0%
TAGTGTGACCAATAAAGAAA+AGG - Chr1:99821937-99821956 MsG0180006079.01.T01:intron 30.0%
TAGTTGCATCTGATTAAACT+TGG - Chr1:99822432-99822451 MsG0180006079.01.T01:five_prime_UTR 30.0%
TATCTAATATATACTACGGC+GGG + Chr1:99822371-99822390 None:intergenic 30.0%
TCAATTGAACATGGTTAAAG+TGG - Chr1:99823407-99823426 MsG0180006079.01.T01:five_prime_UTR 30.0%
TCCAAGAAATCTGATGATAA+TGG - Chr1:99821246-99821265 MsG0180006079.01.T01:intron 30.0%
TGATCCTTCAAGACTATAAA+CGG + Chr1:99823384-99823403 None:intergenic 30.0%
TGCAAAATTGTGTTTGGTTA+GGG - Chr1:99820793-99820812 MsG0180006079.01.T01:intron 30.0%
TGTTCTAATATGTGGTAGAT+TGG - Chr1:99820672-99820691 MsG0180006079.01.T01:CDS 30.0%
! ATATCTTTTTCTCCATGTCT+TGG + Chr1:99823461-99823480 None:intergenic 30.0%
! CAGTTTCATTGATAACAAGA+AGG - Chr1:99823341-99823360 MsG0180006079.01.T01:five_prime_UTR 30.0%
! GACAGAAACCTTTTCTTTAT+TGG + Chr1:99821948-99821967 None:intergenic 30.0%
! TAACTCCTATTTCTTTCTCT+TGG - Chr1:99821652-99821671 MsG0180006079.01.T01:five_prime_UTR 30.0%
! TATTGCTCATTTTATTGTCC+AGG - Chr1:99822630-99822649 MsG0180006079.01.T01:five_prime_UTR 30.0%
! TGATGAAGATGATCCTTTTA+TGG - Chr1:99820484-99820503 MsG0180006079.01.T01:intron 30.0%
! TGTGCATCACATTTTCATTA+TGG - Chr1:99822311-99822330 MsG0180006079.01.T01:five_prime_UTR 30.0%
! TTCATGAGTGAAATCTTTTC+AGG + Chr1:99823210-99823229 None:intergenic 30.0%
! TTGCTGTGTTTTGTATTGAA+AGG - Chr1:99820715-99820734 MsG0180006079.01.T01:intron 30.0%
! TTGGTTTCTGATTGGTTATT+AGG - Chr1:99820691-99820710 MsG0180006079.01.T01:CDS 30.0%
!! AAATCTGATGATAATGGGAT+TGG - Chr1:99821252-99821271 MsG0180006079.01.T01:intron 30.0%
!! AATCTGATGATAATGGGATT+GGG - Chr1:99821253-99821272 MsG0180006079.01.T01:intron 30.0%
!! ATTTTCACTTCTGATTTGTG+TGG + Chr1:99821436-99821455 None:intergenic 30.0%
!! GATTAGCTTGATATCTACTA+AGG - Chr1:99823753-99823772 MsG0180006079.01.T01:five_prime_UTR 30.0%
!!! AAGAGTTGATGAAGATTTTC+AGG - Chr1:99823503-99823522 MsG0180006079.01.T01:five_prime_UTR 30.0%
!!! AGAGTTGATGAAGATTTTCA+GGG - Chr1:99823504-99823523 MsG0180006079.01.T01:five_prime_UTR 30.0%
!!! AGGGTTCTTTATTTTGTGTA+TGG - Chr1:99820756-99820775 MsG0180006079.01.T01:intron 30.0%
!!! TTTATTTTGTGTATGGTGTC+AGG - Chr1:99820763-99820782 MsG0180006079.01.T01:intron 30.0%
AAAACTTGCCTAAGGTGATT+TGG + Chr1:99821794-99821813 None:intergenic 35.0%
AAACAGAGCTTAGGTAACTA+TGG + Chr1:99822397-99822416 None:intergenic 35.0%
AAACATGACCAAATCACCTT+AGG - Chr1:99821783-99821802 MsG0180006079.01.T01:intron 35.0%
AAACCTTGGTCACATATTGA+AGG + Chr1:99820880-99820899 None:intergenic 35.0%
AAAGAACCCTCTTTCTCAAT+AGG + Chr1:99820746-99820765 None:intergenic 35.0%
AACAGAGCTTAGGTAACTAT+GGG + Chr1:99822396-99822415 None:intergenic 35.0%
AACTTGAGTGTTCTTTGTTG+AGG - Chr1:99820600-99820619 MsG0180006079.01.T01:CDS 35.0%
AAGCTGTGCAAAATTGTGTT+TGG - Chr1:99820787-99820806 MsG0180006079.01.T01:intron 35.0%
ACACCATTAAAACTTGCCTA+AGG + Chr1:99821802-99821821 None:intergenic 35.0%
ACTTGAGTGTTCTTTGTTGA+GGG - Chr1:99820601-99820620 MsG0180006079.01.T01:CDS 35.0%
AGTAGTAGTAGTAGTAGTCT+TGG - Chr1:99821838-99821857 MsG0180006079.01.T01:intron 35.0%
AGTCTTTGGATTCTTCTGAA+TGG - Chr1:99820543-99820562 MsG0180006079.01.T01:CDS 35.0%
ATAAAACGCATTAAGTCCTC+AGG + Chr1:99822081-99822100 None:intergenic 35.0%
CAGGTAATGTCTATATCTCT+AGG - Chr1:99822940-99822959 MsG0180006079.01.T01:five_prime_UTR 35.0%
CCCATTATCATCAGATTTCT+TGG + Chr1:99821250-99821269 None:intergenic 35.0%
CCTGCTAAAATGTAACACTT+CGG + Chr1:99823693-99823712 None:intergenic 35.0%
CGCTCCTTCAAATAGATTTA+TGG + Chr1:99822127-99822146 None:intergenic 35.0%
CTAGAGATATAGACATTACC+TGG + Chr1:99822942-99822961 None:intergenic 35.0%
GAGAAAGGACTGATAAACAA+TGG + Chr1:99822010-99822029 None:intergenic 35.0%
GCCAAATAACCAGTATGAAA+TGG + Chr1:99822752-99822771 None:intergenic 35.0%
GGAAAATCCTCTTCCATAAA+AGG + Chr1:99820500-99820519 None:intergenic 35.0%
GGAATTTCCTATTGAGAAAG+AGG - Chr1:99820736-99820755 MsG0180006079.01.T01:intron 35.0%
GGAGAAAAAGATATATCAGG+AGG - Chr1:99823467-99823486 MsG0180006079.01.T01:five_prime_UTR 35.0%
GTAATGCATCCATTTGATGT+GGG - Chr1:99822892-99822911 MsG0180006079.01.T01:five_prime_UTR 35.0%
GTGCAAAATTGTGTTTGGTT+AGG - Chr1:99820792-99820811 MsG0180006079.01.T01:intron 35.0%
GTTGAAAACTCTAGTGGTTA+AGG - Chr1:99820934-99820953 MsG0180006079.01.T01:five_prime_UTR 35.0%
TAGAATGAACTTCCAAGACA+TGG - Chr1:99823446-99823465 MsG0180006079.01.T01:five_prime_UTR 35.0%
TATGTCATTGGACATGGATT+TGG - Chr1:99820005-99820024 MsG0180006079.01.T01:three_prime_UTR 35.0%
TCATCAGATTTCTTGGAAAG+TGG + Chr1:99821243-99821262 None:intergenic 35.0%
TGAAAATGTGATGCACATCA+AGG + Chr1:99822308-99822327 None:intergenic 35.0%
TGAAACCACAAGCAAAATGA+GGG + Chr1:99823021-99823040 None:intergenic 35.0%
TGGAAGTTCATTCTATGAGT+TGG + Chr1:99823441-99823460 None:intergenic 35.0%
TGTAATGCATCCATTTGATG+TGG - Chr1:99822891-99822910 MsG0180006079.01.T01:five_prime_UTR 35.0%
TTCAAGACTATAAACGGTGA+AGG + Chr1:99823378-99823397 None:intergenic 35.0%
! AGATGATCCTTTTATGGAAG+AGG - Chr1:99820490-99820509 MsG0180006079.01.T01:intron 35.0%
! ATTTTGCTTGTGGTTTCAGA+TGG - Chr1:99823023-99823042 MsG0180006079.01.T01:five_prime_UTR 35.0%
! GCCATTTCATACTGGTTATT+TGG - Chr1:99822748-99822767 MsG0180006079.01.T01:five_prime_UTR 35.0%
! TAATGAATATGGTTCGGCAT+GGG - Chr1:99821355-99821374 MsG0180006079.01.T01:intron 35.0%
! TCAATATGTGACCAAGGTTT+TGG - Chr1:99820880-99820899 MsG0180006079.01.T01:CDS 35.0%
! TCTGATGGAATACCTTTTAG+AGG - Chr1:99822264-99822283 MsG0180006079.01.T01:five_prime_UTR 35.0%
! TCTTAGTTGCCATTTCATAC+TGG - Chr1:99822740-99822759 MsG0180006079.01.T01:five_prime_UTR 35.0%
! TTAATGAATATGGTTCGGCA+TGG - Chr1:99821354-99821373 MsG0180006079.01.T01:intron 35.0%
! TTCACCGTTTATAGTCTTGA+AGG - Chr1:99823377-99823396 MsG0180006079.01.T01:five_prime_UTR 35.0%
! TTGATTTTCTCTGCATTGAG+AGG + Chr1:99820338-99820357 None:intergenic 35.0%
!! AATCAGATGCAACTAGTCTT+AGG + Chr1:99822427-99822446 None:intergenic 35.0%
!! AATTTTCCGATTAGTTGCGA+CGG + Chr1:99819958-99819977 None:intergenic 35.0%
!! ATGAGTGAAATCTTTTCAGG+TGG + Chr1:99823207-99823226 None:intergenic 35.0%
!! CGAAGTGTTACATTTTAGCA+GGG - Chr1:99823691-99823710 MsG0180006079.01.T01:five_prime_UTR 35.0%
!! CTTTAGTGTTGTTTGTCTGA+TGG - Chr1:99822249-99822268 MsG0180006079.01.T01:five_prime_UTR 35.0%
!! GGTTATTTGGCTCTTGATAT+TGG - Chr1:99822761-99822780 MsG0180006079.01.T01:five_prime_UTR 35.0%
!! TCACCTTAGGCAAGTTTTAA+TGG - Chr1:99821796-99821815 MsG0180006079.01.T01:intron 35.0%
!!! TGAGTGAAATCTTTTCAGGT+GGG + Chr1:99823206-99823225 None:intergenic 35.0%
AACCTTCCACTCTTGATGTT+AGG + Chr1:99821165-99821184 None:intergenic 40.0%
AAGTATACAGGTGTCAGGTA+TGG + Chr1:99821579-99821598 None:intergenic 40.0%
ACATGAGGCTACTAAGTACA+TGG + Chr1:99823652-99823671 None:intergenic 40.0%
ACATGGTTAAAGTGGCAATC+TGG - Chr1:99823415-99823434 MsG0180006079.01.T01:five_prime_UTR 40.0%
AGATCTTCTATCCGTTCATC+GGG + Chr1:99820405-99820424 None:intergenic 40.0%
ATCGTATCTCAGAAATACGG+TGG + Chr1:99823073-99823092 None:intergenic 40.0%
ATTGGACATGGATTTGGAGA+TGG - Chr1:99820011-99820030 MsG0180006079.01.T01:three_prime_UTR 40.0%
CAAGAAACAGACCAAAACCT+TGG + Chr1:99820894-99820913 None:intergenic 40.0%
CAGATCTTCTATCCGTTCAT+CGG + Chr1:99820406-99820425 None:intergenic 40.0%
CATCTATCTCCCACATCAAA+TGG + Chr1:99822904-99822923 None:intergenic 40.0%
CATGTCCAATGACATATCAC+CGG + Chr1:99820001-99820020 None:intergenic 40.0%
CTGAAACCACAAGCAAAATG+AGG + Chr1:99823022-99823041 None:intergenic 40.0%
CTGCAGGTTTATATATCCTG+AGG - Chr1:99822062-99822081 MsG0180006079.01.T01:intron 40.0%
GAAACCACAAGCAAAATGAG+GGG + Chr1:99823020-99823039 None:intergenic 40.0%
GACCAGCTTCAAATTCGAAT+GGG - Chr1:99820132-99820151 MsG0180006079.01.T01:three_prime_UTR 40.0%
GCATAAAGTATACAGGTGTC+AGG + Chr1:99821584-99821603 None:intergenic 40.0%
GCTCTAACATTAATGTCGAG+AGG + Chr1:99823556-99823575 None:intergenic 40.0%
GCTGAATCCAAATAACGTGT+CGG - Chr1:99821314-99821333 MsG0180006079.01.T01:intron 40.0%
GGATCACGATCAATTGAACA+TGG - Chr1:99823398-99823417 MsG0180006079.01.T01:five_prime_UTR 40.0%
GGCAGCTTAAGTTTGGAAAT+GGG - Chr1:99820636-99820655 MsG0180006079.01.T01:CDS 40.0%
GTGGTTGTTGAAAACTCTAG+TGG - Chr1:99820928-99820947 MsG0180006079.01.T01:five_prime_UTR 40.0%
GTTTGTGATCGAAACACTCT+CGG - Chr1:99821021-99821040 MsG0180006079.01.T01:five_prime_UTR 40.0%
TAACAGTGTCCTTGCTACTA+AGG - Chr1:99823113-99823132 MsG0180006079.01.T01:five_prime_UTR 40.0%
TAGTAGCAAGGACACTGTTA+GGG + Chr1:99823113-99823132 None:intergenic 40.0%
TCAATAGAATCTCCCATGTC+AGG + Chr1:99823162-99823181 None:intergenic 40.0%
TGGCAGCTTAAGTTTGGAAA+TGG - Chr1:99820635-99820654 MsG0180006079.01.T01:CDS 40.0%
TGTCCTTCAATATGTGACCA+AGG - Chr1:99820874-99820893 MsG0180006079.01.T01:CDS 40.0%
TTAGTAGCAAGGACACTGTT+AGG + Chr1:99823114-99823133 None:intergenic 40.0%
TTCCACTCTTGATGTTAGGA+AGG + Chr1:99821161-99821180 None:intergenic 40.0%
TTCCTAACATCAAGAGTGGA+AGG - Chr1:99821160-99821179 MsG0180006079.01.T01:intron 40.0%
TTTGTGATCGAAACACTCTC+GGG - Chr1:99821022-99821041 MsG0180006079.01.T01:five_prime_UTR 40.0%
! AAATCGAGTCAGCTTTTGTC+CGG - Chr1:99820437-99820456 MsG0180006079.01.T01:intron 40.0%
! AATGAATATGGTTCGGCATG+GGG - Chr1:99821356-99821375 MsG0180006079.01.T01:intron 40.0%
! ATCCCATTCGAATTTGAAGC+TGG + Chr1:99820137-99820156 None:intergenic 40.0%
! CGAGTTGAAAGTTAGTTTCG+AGG - Chr1:99820110-99820129 MsG0180006079.01.T01:three_prime_UTR 40.0%
! TATGTATGGCCTTAGTAGCA+AGG + Chr1:99823125-99823144 None:intergenic 40.0%
! TCGATGAAGTTTGTTCACTG+CGG + Chr1:99822710-99822729 None:intergenic 40.0%
! TTGATAACAAGAAGGAGCAC+TGG - Chr1:99823349-99823368 MsG0180006079.01.T01:five_prime_UTR 40.0%
!! AAGTTTGTTCACTGCGGTTT+TGG + Chr1:99822704-99822723 None:intergenic 40.0%
!! CAAGGTTTTGGTCTGTTTCT+TGG - Chr1:99820892-99820911 MsG0180006079.01.T01:exon 40.0%
!! CCGAAGTGTTACATTTTAGC+AGG - Chr1:99823690-99823709 MsG0180006079.01.T01:five_prime_UTR 40.0%
!! GATGATAATGGGATTGGGAA+TGG - Chr1:99821258-99821277 MsG0180006079.01.T01:intron 40.0%
!! GTGGTAGATTGGTTTCTGAT+TGG - Chr1:99820683-99820702 MsG0180006079.01.T01:CDS 40.0%
!! GTGTTACATTTTAGCAGGGT+AGG - Chr1:99823695-99823714 MsG0180006079.01.T01:five_prime_UTR 40.0%
!! GTTAGGGCTTTTTGATTGCA+TGG - Chr1:99820809-99820828 MsG0180006079.01.T01:intron 40.0%
!! GTTTTGGTCTGTTTCTTGGT+GGG - Chr1:99820896-99820915 MsG0180006079.01.T01:exon 40.0%
!!! GAGTGAAATCTTTTCAGGTG+GGG + Chr1:99823205-99823224 None:intergenic 40.0%
AAAAGCCCTGTGGTTAAGAG+TGG - Chr1:99821204-99821223 MsG0180006079.01.T01:intron 45.0%
AAACCTGCAGTGCAGCATAA+AGG + Chr1:99822052-99822071 None:intergenic 45.0%
AACGGATAGAAGATCTGGTC+GGG - Chr1:99820409-99820428 MsG0180006079.01.T01:intron 45.0%
AACTTGCCACTCTTAACCAC+AGG + Chr1:99821213-99821232 None:intergenic 45.0%
AAGCTGTGAACGATCCTGTT+CGG - Chr1:99820159-99820178 MsG0180006079.01.T01:three_prime_UTR 45.0%
AATCTCCCATGTCAGGACTA+CGG + Chr1:99823155-99823174 None:intergenic 45.0%
AATGAAGGTAACGTCGCTGA+CGG - Chr1:99820045-99820064 MsG0180006079.01.T01:three_prime_UTR 45.0%
AATGACGACGGTCGTGATTA+GGG + Chr1:99820239-99820258 None:intergenic 45.0%
AATGCTTCAGAAAAGCCCTG+TGG - Chr1:99821194-99821213 MsG0180006079.01.T01:intron 45.0%
ACATAATGCCACGCAACATG+AGG + Chr1:99823667-99823686 None:intergenic 45.0%
ACATCAAGAGTGGAAGGTTG+AGG - Chr1:99821166-99821185 MsG0180006079.01.T01:intron 45.0%
ACTCTGTGGCAGCTTAAGTT+TGG - Chr1:99820629-99820648 MsG0180006079.01.T01:CDS 45.0%
ACTTGCCACTCTTAACCACA+GGG + Chr1:99821212-99821231 None:intergenic 45.0%
ATCTTCTATCCGTTCATCGG+GGG + Chr1:99820403-99820422 None:intergenic 45.0%
ATGGAGGAGCTTCAGAATGA+AGG - Chr1:99820030-99820049 MsG0180006079.01.T01:three_prime_UTR 45.0%
ATGTGAAATTGATGCGACCC+AGG - Chr1:99822921-99822940 MsG0180006079.01.T01:five_prime_UTR 45.0%
CAAATCCGCGTTGAAGAACT+GGG - Chr1:99822167-99822186 MsG0180006079.01.T01:intron 45.0%
CGATGAACGGATAGAAGATC+TGG - Chr1:99820404-99820423 MsG0180006079.01.T01:intron 45.0%
CGGTGATATGTCATTGGACA+TGG - Chr1:99819999-99820018 MsG0180006079.01.T01:three_prime_UTR 45.0%
GAACGGATAGAAGATCTGGT+CGG - Chr1:99820408-99820427 MsG0180006079.01.T01:intron 45.0%
GATCTTCTATCCGTTCATCG+GGG + Chr1:99820404-99820423 None:intergenic 45.0%
GGACCAGCTTCAAATTCGAA+TGG - Chr1:99820131-99820150 MsG0180006079.01.T01:three_prime_UTR 45.0%
GGATGTCTTCCCCTTCTATT+TGG - Chr1:99821715-99821734 MsG0180006079.01.T01:intron 45.0%
GTCTTCTTGCAATGCAAACC+TGG - Chr1:99822977-99822996 MsG0180006079.01.T01:five_prime_UTR 45.0%
GTGATTGTTGTCCAACTAGC+TGG + Chr1:99823604-99823623 None:intergenic 45.0%
GTTCAGAAGTTGCAGAATGC+CGG - Chr1:99821103-99821122 MsG0180006079.01.T01:intron 45.0%
GTTCCTCTCAAACGAAGCAT+TGG + Chr1:99820316-99820335 None:intergenic 45.0%
TGAGGCTACTAAGTACATGG+TGG + Chr1:99823649-99823668 None:intergenic 45.0%
TGCCTTCCTAACATCAAGAG+TGG - Chr1:99821156-99821175 MsG0180006079.01.T01:intron 45.0%
TGTCCAGGTTAATGCCTTCA+GGG - Chr1:99822645-99822664 MsG0180006079.01.T01:five_prime_UTR 45.0%
TGTGAGCTCACAACTTGTCT+TGG - Chr1:99822811-99822830 MsG0180006079.01.T01:five_prime_UTR 45.0%
TGTTGAGGGATAAGACTCTG+TGG - Chr1:99820615-99820634 MsG0180006079.01.T01:CDS 45.0%
TTCCAAGCCGACACGTTATT+TGG + Chr1:99821324-99821343 None:intergenic 45.0%
TTCTACCGTAGTCCTGACAT+GGG - Chr1:99823147-99823166 MsG0180006079.01.T01:five_prime_UTR 45.0%
TTGTCCAGGTTAATGCCTTC+AGG - Chr1:99822644-99822663 MsG0180006079.01.T01:five_prime_UTR 45.0%
TTGTGATCGAAACACTCTCG+GGG - Chr1:99821023-99821042 MsG0180006079.01.T01:five_prime_UTR 45.0%
TTTCAGAATGTTGCTAGGCG+TGG - Chr1:99821483-99821502 MsG0180006079.01.T01:intron 45.0%
TTTCGAATCTCCACCAAAGG+CGG + Chr1:99821049-99821068 None:intergenic 45.0%
TTTCTACCGTAGTCCTGACA+TGG - Chr1:99823146-99823165 MsG0180006079.01.T01:five_prime_UTR 45.0%
TTTGGTGGAGATTCGAAAGG+CGG - Chr1:99821051-99821070 MsG0180006079.01.T01:five_prime_UTR 45.0%
! AATCGAGTCAGCTTTTGTCC+GGG - Chr1:99820438-99820457 MsG0180006079.01.T01:intron 45.0%
! AGCTTTTGTCCGGGATGATT+GGG - Chr1:99820447-99820466 MsG0180006079.01.T01:intron 45.0%
! CTGTTTCTTGGTGGGTACTT+TGG - Chr1:99820904-99820923 MsG0180006079.01.T01:five_prime_UTR 45.0%
! GCGTTTTATGCGAGAAGATG+AGG - Chr1:99822092-99822111 MsG0180006079.01.T01:intron 45.0%
! TAATGTCGAGAGGCATGAGA+CGG + Chr1:99823546-99823565 None:intergenic 45.0%
!! AGATGCAACTAGTCTTAGGC+AGG + Chr1:99822423-99822442 None:intergenic 45.0%
!! ATCCAAATAACGTGTCGGCT+TGG - Chr1:99821319-99821338 MsG0180006079.01.T01:intron 45.0%
!! GATAATGGGATTGGGAATGG+TGG - Chr1:99821261-99821280 MsG0180006079.01.T01:intron 45.0%
!! GATCCTCTAGCTTAGCTTTG+TGG + Chr1:99819933-99819952 None:intergenic 45.0%
!! GATGCAACTAGTCTTAGGCA+GGG + Chr1:99822422-99822441 None:intergenic 45.0%
!! GGTTTTGGTCTGTTTCTTGG+TGG - Chr1:99820895-99820914 MsG0180006079.01.T01:exon 45.0%
!! TGTCGGCTTGGAATATGAAG+AGG - Chr1:99821331-99821350 MsG0180006079.01.T01:intron 45.0%
!! TTAGGAAGGCACTAGCTCTT+AGG + Chr1:99821147-99821166 None:intergenic 45.0%
!! TTGAAGGAGCGTCTGATTCT+GGG - Chr1:99822136-99822155 MsG0180006079.01.T01:intron 45.0%
!! TTTGAAGGAGCGTCTGATTC+TGG - Chr1:99822135-99822154 MsG0180006079.01.T01:intron 45.0%
AACTCGCGTTGAATCACCGT+GGG + Chr1:99820096-99820115 None:intergenic 50.0%
AAGAGTGGAAGGTTGAGGAG+TGG - Chr1:99821171-99821190 MsG0180006079.01.T01:intron 50.0%
AATGGGATTGGGAATGGTGG+TGG - Chr1:99821264-99821283 MsG0180006079.01.T01:intron 50.0%
ACAAGCAAAATGAGGGGAGG+GGG + Chr1:99823014-99823033 None:intergenic 50.0%
ACCACAAGCAAAATGAGGGG+AGG + Chr1:99823017-99823036 None:intergenic 50.0%
ACCTTTCCTCCCAATCATCC+CGG + Chr1:99820459-99820478 None:intergenic 50.0%
AGCAAGGATTCGCCGTCAAT+GGG - Chr1:99820189-99820208 MsG0180006079.01.T01:three_prime_UTR 50.0%
AGCTGGAAGACGATCAGAAG+TGG + Chr1:99823587-99823606 None:intergenic 50.0%
AGGTTAATGCCTTCAGGGAG+AGG - Chr1:99822650-99822669 MsG0180006079.01.T01:five_prime_UTR 50.0%
ATGACGACGGTCGTGATTAG+GGG + Chr1:99820238-99820257 None:intergenic 50.0%
CACAAGCAAAATGAGGGGAG+GGG + Chr1:99823015-99823034 None:intergenic 50.0%
CCACAAGCAAAATGAGGGGA+GGG + Chr1:99823016-99823035 None:intergenic 50.0%
CCTCCAATGCTTCGTTTGAG+AGG - Chr1:99820310-99820329 MsG0180006079.01.T01:CDS 50.0%
CGAGCATACTCACCCATTGA+CGG + Chr1:99820204-99820223 None:intergenic 50.0%
CGTCAATGGGTGAGTATGCT+CGG - Chr1:99820202-99820221 MsG0180006079.01.T01:three_prime_UTR 50.0%
CTCATCACGAACATTGTCGC+CGG + Chr1:99819896-99819915 None:intergenic 50.0%
CTGATCGTCTTCCAGCTAGT+TGG - Chr1:99823590-99823609 MsG0180006079.01.T01:five_prime_UTR 50.0%
CTTAGTAGCCTCATGTTGCG+TGG - Chr1:99823656-99823675 MsG0180006079.01.T01:five_prime_UTR 50.0%
CTTCCTTTATGCTGCACTGC+AGG - Chr1:99822046-99822065 MsG0180006079.01.T01:intron 50.0%
CTTTCATAACAGCGTGCCTC+CGG - Chr1:99819979-99819998 MsG0180006079.01.T01:three_prime_UTR 50.0%
GAATGACGACGGTCGTGATT+AGG + Chr1:99820240-99820259 None:intergenic 50.0%
GAGGGGGACAAAATTAGACC+AGG + Chr1:99822998-99823017 None:intergenic 50.0%
GATCCACCGTCGCAACTAAT+CGG - Chr1:99819949-99819968 MsG0180006079.01.T01:three_prime_UTR 50.0%
GCAAATCCGCGTTGAAGAAC+TGG - Chr1:99822166-99822185 MsG0180006079.01.T01:intron 50.0%
GCCTTTCGAATCTCCACCAA+AGG + Chr1:99821052-99821071 None:intergenic 50.0%
GCCTTTGGTGGAGATTCGAA+AGG - Chr1:99821048-99821067 MsG0180006079.01.T01:five_prime_UTR 50.0%
GGAAGACGATCAGAAGTGGT+AGG + Chr1:99823583-99823602 None:intergenic 50.0%
GGACATGGATTTGGAGATGG+AGG - Chr1:99820014-99820033 MsG0180006079.01.T01:three_prime_UTR 50.0%
GTCAGCAGGTATGCTAACAC+CGG + Chr1:99821125-99821144 None:intergenic 50.0%
GTCCAATGACATATCACCGG+AGG + Chr1:99819998-99820017 None:intergenic 50.0%
TACCACCCAGTTCTTCAACG+CGG + Chr1:99822175-99822194 None:intergenic 50.0%
TCGTCATTCTCCATCACCTG+CGG - Chr1:99820251-99820270 MsG0180006079.01.T01:exon 50.0%
TCTTCTATCCGTTCATCGGG+GGG + Chr1:99820402-99820421 None:intergenic 50.0%
TGCCTCCGGTGATATGTCAT+TGG - Chr1:99819993-99820012 MsG0180006079.01.T01:three_prime_UTR 50.0%
! CAGCTTTTGTCCGGGATGAT+TGG - Chr1:99820446-99820465 MsG0180006079.01.T01:intron 50.0%
! GCATGGGGCACTTACTACAT+TGG - Chr1:99821371-99821390 MsG0180006079.01.T01:intron 50.0%
! GTGGTGATTGCGAGGTTTTG+AGG - Chr1:99820283-99820302 MsG0180006079.01.T01:CDS 50.0%
! TCTTGGTGGGTACTTTGGTG+TGG - Chr1:99820909-99820928 MsG0180006079.01.T01:five_prime_UTR 50.0%
! TTTCAGGTGGGGTAGCTACA+TGG + Chr1:99823194-99823213 None:intergenic 50.0%
! TTTCCGATTAGTTGCGACGG+TGG + Chr1:99819955-99819974 None:intergenic 50.0%
! TTTTGTCCGGGATGATTGGG+AGG - Chr1:99820450-99820469 MsG0180006079.01.T01:intron 50.0%
!! AGAGGAAAGGCTTGCTGATG+AGG - Chr1:99821081-99821100 MsG0180006079.01.T01:five_prime_UTR 50.0%
!! ATCGAGAGAGTATTCGTGCC+TGG - Chr1:99822532-99822551 MsG0180006079.01.T01:five_prime_UTR 50.0%
!! CAGGTGATGGAGAATGACGA+CGG + Chr1:99820251-99820270 None:intergenic 50.0%
!! CCTCTAGCTTAGCTTTGTGG+CGG + Chr1:99819930-99819949 None:intergenic 50.0%
!! CCTCTCAAACGAAGCATTGG+AGG + Chr1:99820313-99820332 None:intergenic 50.0%
!! TAATGGTGGTGGTGATTGCG+AGG - Chr1:99820275-99820294 MsG0180006079.01.T01:CDS 50.0%
!! TCTCCCTGAAGGCATTAACC+TGG + Chr1:99822651-99822670 None:intergenic 50.0%
AGGCGGAAGAGGAAGAGGAA+AGG - Chr1:99821068-99821087 MsG0180006079.01.T01:five_prime_UTR 55.0%
ATCCGCGTTGAAGAACTGGG+TGG - Chr1:99822170-99822189 MsG0180006079.01.T01:intron 55.0%
CAACTCGCGTTGAATCACCG+TGG + Chr1:99820097-99820116 None:intergenic 55.0%
CAGCAAGGATTCGCCGTCAA+TGG - Chr1:99820188-99820207 MsG0180006079.01.T01:three_prime_UTR 55.0%
CCGCCACAAAGCTAAGCTAG+AGG - Chr1:99819927-99819946 MsG0180006079.01.T01:three_prime_UTR 55.0%
CCTGTTCGGAGAACACAGCA+AGG - Chr1:99820173-99820192 MsG0180006079.01.T01:three_prime_UTR 55.0%
CGCTGACGGAAAGTTAACGC+CGG - Chr1:99820059-99820078 MsG0180006079.01.T01:three_prime_UTR 55.0%
CGTCATTCTCCATCACCTGC+GGG - Chr1:99820252-99820271 MsG0180006079.01.T01:exon 55.0%
GGAGATTCGAAAGGCGGAAG+AGG - Chr1:99821057-99821076 MsG0180006079.01.T01:five_prime_UTR 55.0%
GGCAGGGTCAAACAGAGCTT+AGG + Chr1:99822406-99822425 None:intergenic 55.0%
TCCGGGATGATTGGGAGGAA+AGG - Chr1:99820455-99820474 MsG0180006079.01.T01:intron 55.0%
TCGAAAGGCGGAAGAGGAAG+AGG - Chr1:99821063-99821082 MsG0180006079.01.T01:five_prime_UTR 55.0%
TCGTGATTAGGGGGTTGTGG+AGG + Chr1:99820228-99820247 None:intergenic 55.0%
TCTCCATCACCTGCGGGTAA+TGG - Chr1:99820258-99820277 MsG0180006079.01.T01:CDS 55.0%
TGACGACGGTCGTGATTAGG+GGG + Chr1:99820237-99820256 None:intergenic 55.0%
TGACGGAAAGTTAACGCCGG+TGG - Chr1:99820062-99820081 MsG0180006079.01.T01:three_prime_UTR 55.0%
! CCCTCCCCTCATTTTGCTTG+TGG - Chr1:99823013-99823032 MsG0180006079.01.T01:five_prime_UTR 55.0%
! CCTTGCTGTGTTCTCCGAAC+AGG + Chr1:99820176-99820195 None:intergenic 55.0%
! GCACTAGCTCTTAGGTCAGC+AGG + Chr1:99821139-99821158 None:intergenic 55.0%
!! GGATTGGGAATGGTGGTGGT+GGG - Chr1:99821268-99821287 MsG0180006079.01.T01:intron 55.0%
AAGCGCTCTCCTCTCCCTGA+AGG + Chr1:99822662-99822681 None:intergenic 60.0%
ACCGTGGGAGATTCCTCCAC+CGG + Chr1:99820081-99820100 None:intergenic 60.0%
ATGTTGCTAGGCGTGGCTGC+AGG - Chr1:99821490-99821509 MsG0180006079.01.T01:intron 60.0%
CCACCATTACCCGCAGGTGA+TGG + Chr1:99820264-99820283 None:intergenic 60.0%
CGGAAAGTTAACGCCGGTGG+AGG - Chr1:99820065-99820084 MsG0180006079.01.T01:three_prime_UTR 60.0%
CGGTCGTGATTAGGGGGTTG+TGG + Chr1:99820231-99820250 None:intergenic 60.0%
CTATCCGTTCATCGGGGGGT+GGG + Chr1:99820398-99820417 None:intergenic 60.0%
GGGGGGTGGGTCCATTAATC+TGG + Chr1:99820385-99820404 None:intergenic 60.0%
TCACCACCACCATTACCCGC+AGG + Chr1:99820270-99820289 None:intergenic 60.0%
TCTATCCGTTCATCGGGGGG+TGG + Chr1:99820399-99820418 None:intergenic 60.0%
! CCATCACCTGCGGGTAATGG+TGG - Chr1:99820261-99820280 MsG0180006079.01.T01:CDS 60.0%
! TCACCTGCGGGTAATGGTGG+TGG - Chr1:99820264-99820283 MsG0180006079.01.T01:CDS 60.0%
!! GGGATTGGGAATGGTGGTGG+TGG - Chr1:99821267-99821286 MsG0180006079.01.T01:intron 60.0%
AACACTCTCGGGGCCGCCTT+TGG - Chr1:99821033-99821052 MsG0180006079.01.T01:five_prime_UTR 65.0%
GCCGGTGGAGGAATCTCCCA+CGG - Chr1:99820077-99820096 MsG0180006079.01.T01:three_prime_UTR 65.0%
TGGACCCACCCCCCGATGAA+CGG - Chr1:99820391-99820410 MsG0180006079.01.T01:CDS 65.0%
ACTCTCGGGGCCGCCTTTGG+TGG - Chr1:99821036-99821055 MsG0180006079.01.T01:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 99819886 99823870 99819886 ID=MsG0180006079.01;Name=MsG0180006079.01
Chr1 mRNA 99819886 99823870 99819886 ID=MsG0180006079.01.T01;Parent=MsG0180006079.01;Name=MsG0180006079.01.T01;_AED=0.20;_eAED=0.20;_QI=1954|1|1|1|0.5|0.8|5|367|149
Chr1 exon 99819886 99820412 99819886 ID=MsG0180006079.01.T01:exon:24943;Parent=MsG0180006079.01.T01
Chr1 exon 99820512 99820714 99820512 ID=MsG0180006079.01.T01:exon:24942;Parent=MsG0180006079.01.T01
Chr1 exon 99820814 99821104 99820814 ID=MsG0180006079.01.T01:exon:24941;Parent=MsG0180006079.01.T01
Chr1 exon 99821565 99821688 99821565 ID=MsG0180006079.01.T01:exon:24940;Parent=MsG0180006079.01.T01
Chr1 five_prime_UTR 99822245 99823870 99822245 ID=MsG0180006079.01.T01:five_prime_utr;Parent=MsG0180006079.01.T01
Chr1 five_prime_UTR 99821565 99821688 99821565 ID=MsG0180006079.01.T01:five_prime_utr;Parent=MsG0180006079.01.T01
Chr1 five_prime_UTR 99820901 99821104 99820901 ID=MsG0180006079.01.T01:five_prime_utr;Parent=MsG0180006079.01.T01
Chr1 CDS 99820814 99820900 99820814 ID=MsG0180006079.01.T01:cds;Parent=MsG0180006079.01.T01
Chr1 CDS 99820512 99820714 99820512 ID=MsG0180006079.01.T01:cds;Parent=MsG0180006079.01.T01
Chr1 CDS 99820253 99820412 99820253 ID=MsG0180006079.01.T01:cds;Parent=MsG0180006079.01.T01
Chr1 three_prime_UTR 99819886 99820252 99819886 ID=MsG0180006079.01.T01:three_prime_utr;Parent=MsG0180006079.01.T01
Chr1 mRNA 99822570 99823738 99822570 ID=MsG0180006079.01.T02;Parent=MsG0180006079.01;Name=MsG0180006079.01.T02;_AED=0.45;_eAED=0.48;_QI=0|0|0|1|1|0.5|2|0|160
Chr1 exon 99823593 99823738 99823593 ID=MsG0180006079.01.T02:exon:24945;Parent=MsG0180006079.01.T02
Chr1 exon 99822570 99822906 99822570 ID=MsG0180006079.01.T02:exon:24944;Parent=MsG0180006079.01.T02
Chr1 CDS 99823593 99823738 99823593 ID=MsG0180006079.01.T02:cds;Parent=MsG0180006079.01.T02
Chr1 CDS 99822570 99822906 99822570 ID=MsG0180006079.01.T02:cds;Parent=MsG0180006079.01.T02
Chr1 mRNA 99821538 99823870 99821538 ID=MsG0180006079.01.T03;Parent=MsG0180006079.01;Name=MsG0180006079.01.T03;_AED=0.31;_eAED=0.31;_QI=1309|1|0.5|1|1|1|2|0|155
Chr1 exon 99821538 99821688 99821538 ID=MsG0180006079.01.T03:exon:24946;Parent=MsG0180006079.01.T03
Chr1 five_prime_UTR 99822562 99823870 99822562 ID=MsG0180006079.01.T03:five_prime_utr;Parent=MsG0180006079.01.T03
Chr1 CDS 99822245 99822561 99822245 ID=MsG0180006079.01.T03:cds;Parent=MsG0180006079.01.T03
Chr1 CDS 99821538 99821688 99821538 ID=MsG0180006079.01.T03:cds;Parent=MsG0180006079.01.T03
Gene Sequence

>MsG0180006079.01.T02

ATGGATTTGGAGATGGAGGAGCTTCAGAATGAAGGTAACGTCGCTGACGGAAAGTTAACGCCGGTGGAGGAATCTCCCACGGTGATTCAACGCGAGTTGAAAGTTAGTTTCGAGGACCAGCTTCAAATTCGAATGGGATTGAAGCTAGTTCAAAGAGAGACAAACAGTGATGTCCTTCAATATGTGACCAAGGTTTTGGTCTGTTTCTTGGTGGGTACTTTGGTGTGGTTGTTGAAAACTCTAGTGGTTAAGGTTTTAGCTTCTTCTTTTCATGTGAGTACATACTTTGATAGGATTCAAGAGTCACTGTTTAATCAGTTTGTGATCGAAACACTCTCGGGGCCGCCTTTGGTGGAGATTCGAAAGGCGGAAGAGGAAGAGGAAAGGCTTGCTGATGAGGTTCAGAAGTTGCAGAATGCCGGTGTTAGCATACCTGCTGACCTAAGAGCTAGTGCCTTCCTAACATCAAGAGTGGAAGGTTGA

>MsG0180006079.01.T03

ATGCTTCAGAAAAGCCCTGTGGTTAAGAGTGGCAAGTTTTCAATGCCACTTTCCAAGAAATCTGATGATAATGGGATTGGGAATGGTGGTGGTGGGATAACTATTGATCACTTGCACAAGCTGAATCCAAATAACGTGTCGGCTTGGAATATGAAGAGGTTAATGAATATGGTTCGGCATGGGGCACTTACTACATTGGATGAGCAGATACTTGATTCTTCTGCTGATGATGAGCATGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGTGGCTGCAGGTTTATATATCCTGAGGACTTAATGCGTTTTATGCGAGAAGATGAGGCTATAAAAACCATAAATCTATTTGAAGGAGCGTCTGATTCTGGGAAAATCAGCAAATCCGCGTTGAAGAACTGGGTGGTAAGATTTAACGCGTATGATGCATAA

>MsG0180006079.01.T01

ATGCAAGACTGTATTGAAGCAATCATATTTTTATTTGTAATGCATCCATTTGATGTGGGAGATAGATGTGAAATTGATGCGACCCAGATGGTTGTCGAAGAGATGAACATCTTGACCACCGTATTTCTGAGATACGATAATCAAAAGATAACGATCCCTAACAGTGTCCTTGCTACTAAGGCCATACATAATTTCTACCGTAGTCCTGACATGGGAGATTCTATTGAATTCTGTATCCATGTAGCTACCCCACCTGAAAAGATTTCACTCATGAAACACAGAATACATAATTTCATTGATAACAAGAAGGAGCACTGGTATCCTTCACCGTTTATAGTCTTGAAGGATCACGATCAATTGAACATGGTTAAAGTGGCAATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGAGAAAAAGATATATCAGGAGGTCTCTTCTTATTGA
Protein sequence

>MsG0180006079.01.T02

MDLEMEELQNEGNVADGKLTPVEESPTVIQRELKVSFEDQLQIRMGLKLVQRETNSDVLQYVTKVLVCFLVGTLVWLLKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLADEVQKLQNAGVSIPADLRASAFLTSRVEG*

>MsG0180006079.01.T03

MLQKSPVVKSGKFSMPLSKKSDDNGIGNGGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSSADDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLMRFMREDEAIKTINLFEGASDSGKISKSALKNWVVRFNAYDA*

>MsG0180006079.01.T01

MQDCIEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRYDNQKITIPNSVLATKAIHNFYRSPDMGDSIEFCIHVATPPEKISLMKHRIHNFIDNKKEHWYPSPFIVLKDHDQLNMVKVAIWPTHRMNFQDMEKKIYQEVSSY*