AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036754.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036754.01.T01 MTR_7g018290 85.765 281 17 2 45 302 69 349 1.63e-173 485
MsG0780036754.01.T01 MTR_0003s0660 85.765 281 17 2 45 302 115 395 8.77e-173 485
MsG0780036754.01.T01 MTR_0003s0660 87.879 33 4 0 17 49 17 49 1.28e-11 65.1
MsG0780036754.01.T01 MTR_7g018310 86.842 266 21 3 45 302 115 374 3.10e-161 455
MsG0780036754.01.T01 MTR_7g018310 90.909 33 3 0 17 49 17 49 3.48e-12 67.0
MsG0780036754.01.T01 MTR_7g018320 78.927 261 24 5 45 303 115 346 4.98e-136 390
MsG0780036754.01.T01 MTR_7g018320 87.879 33 4 0 17 49 17 49 9.37e-12 65.5
MsG0780036754.01.T01 MTR_0076s0020 60.900 289 87 5 45 309 67 353 3.95e-117 342
MsG0780036754.01.T01 MTR_8g069905 52.443 307 118 5 21 303 48 350 6.76e-103 306
MsG0780036754.01.T01 MTR_2g020990 38.328 287 141 7 35 285 56 342 1.16e-51 174
MsG0780036754.01.T01 MTR_4g118320 35.172 290 145 6 35 284 53 339 1.45e-47 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036754.01.T01 AT3G02470 54.839 310 102 10 37 310 59 366 7.71e-101 301
MsG0780036754.01.T01 AT3G02470 54.839 310 102 10 37 310 59 366 7.71e-101 301
MsG0780036754.01.T01 AT3G02470 54.839 310 102 10 37 310 59 366 7.71e-101 301
MsG0780036754.01.T01 AT3G25570 56.890 283 95 5 45 300 67 349 4.22e-100 298
MsG0780036754.01.T01 AT3G25570 56.890 283 95 5 45 300 67 349 4.22e-100 298
MsG0780036754.01.T01 AT5G15950 52.303 304 117 6 37 312 59 362 2.88e-96 289
MsG0780036754.01.T01 AT5G15950 52.303 304 117 6 37 312 59 362 2.88e-96 289
MsG0780036754.01.T01 AT5G18930 37.857 280 134 7 45 285 65 343 4.70e-53 177
MsG0780036754.01.T01 AT3G17717 59.091 66 26 1 180 244 62 127 2.73e-19 82.8

Find 84 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATGGAAGAGAAAGAATT+AGG 0.249214 7:+13228733 None:intergenic
CGATTTCTTCTCAATGAATC+AGG 0.253525 7:+13228549 None:intergenic
AAGAATTAGGTTTCGGAGAT+TGG 0.256330 7:+13228746 None:intergenic
CGCGGAAGCTTCATCTTTCC+TGG 0.256495 7:-13226780 MsG0780036754.01.T01:CDS
AAATTTCCTTTGGAGGTTAA+AGG 0.271383 7:-13226222 MsG0780036754.01.T01:CDS
TTCGGAGATTGGAATTGATT+TGG 0.276556 7:+13228757 None:intergenic
GCTGTTCTTGACAGCTATTT+TGG 0.280170 7:-13226717 MsG0780036754.01.T01:CDS
GAAGTCACATATGTCAGATT+TGG 0.308369 7:+13226470 None:intergenic
TCGGAGATTGGAATTGATTT+GGG 0.315049 7:+13228758 None:intergenic
GCATAACTGAATCCATCTTC+AGG 0.337519 7:+13226378 None:intergenic
TGAGAACGAGGAGGAAGTTA+AGG 0.347960 7:-13226073 MsG0780036754.01.T01:CDS
ATGCTGATAAGTCACAAATT+TGG 0.357352 7:-13226656 MsG0780036754.01.T01:CDS
AAAACTTGACAAATTTCCTT+TGG 0.369192 7:-13226232 MsG0780036754.01.T01:CDS
ATGACTAGAATTCTGGAATC+AGG 0.375618 7:-13226502 MsG0780036754.01.T01:intron
GAAGAGAAAGAATTAGGTTT+CGG 0.376916 7:+13228739 None:intergenic
GAGAGGAGCTTCGTACAAAA+AGG 0.388362 7:+13227509 None:intergenic
ACTTCGAATTTGAACCTTGC+GGG 0.390896 7:-13226452 MsG0780036754.01.T01:CDS
AGGTTTGATGACTAGAATTC+TGG 0.394261 7:-13226509 MsG0780036754.01.T01:intron
GCTTCACCGGAAGCTGTCTA+TGG 0.396357 7:-13226603 MsG0780036754.01.T01:CDS
TCAAGGCCATAGACAGCTTC+CGG 0.398954 7:+13226597 None:intergenic
TCGGCAAGCTTAAGAATTGC+AGG 0.407592 7:+13226840 None:intergenic
GGTCTACTCTGAAATGTTGC+TGG 0.418240 7:-13226104 MsG0780036754.01.T01:CDS
CGTACCTTTGTTCGAAATGA+TGG 0.419044 7:-13226141 MsG0780036754.01.T01:CDS
AAATCTCTGAATGAACTTGT+TGG 0.430429 7:-13226321 MsG0780036754.01.T01:CDS
AACCAGTCATGCACATTTCA+AGG 0.440811 7:+13226580 None:intergenic
ACTTGACAAATTTCCTTTGG+AGG 0.442578 7:-13226229 MsG0780036754.01.T01:CDS
TTCAGGGGTGACGTGGATAG+TGG 0.450732 7:+13226395 None:intergenic
TGAGGGAAGGATTGAGCTCC+AGG 0.451159 7:+13226762 None:intergenic
GGCCTTGAAATGTGCATGAC+TGG 0.467615 7:-13226582 MsG0780036754.01.T01:intron
GTGAAGTGTGAATGAACTAA+TGG 0.476790 7:-13227574 MsG0780036754.01.T01:exon
TACTCAATGAACGGAATTGA+AGG 0.488720 7:-13226429 MsG0780036754.01.T01:CDS
CTCTGAATGAACTTGTTGGA+AGG 0.494644 7:-13226317 MsG0780036754.01.T01:CDS
TCTGAATGAACTTGTTGGAA+GGG 0.497768 7:-13226316 MsG0780036754.01.T01:CDS
ATCCACGTCACCCCTGAAGA+TGG 0.499429 7:-13226390 MsG0780036754.01.T01:CDS
CATAACTGAATCCATCTTCA+GGG 0.502683 7:+13226379 None:intergenic
TACAGAAATGAAGGAAATTG+AGG 0.510997 7:+13228682 None:intergenic
AAGCAATTTCGTAGTCCCGC+AGG 0.513037 7:+13226872 None:intergenic
GAAAGGATCAATGAAGTGCT+TGG 0.514175 7:-13226186 MsG0780036754.01.T01:CDS
TGTTAACATTGCTGTGAAAT+CGG 0.515435 7:-13226814 MsG0780036754.01.T01:CDS
AAATGCACTTACAGAAATGA+AGG 0.523434 7:+13228673 None:intergenic
AAGGATACAACTGTGGAGAA+AGG 0.528377 7:-13226203 MsG0780036754.01.T01:CDS
CATCACCCATCATGTAAGCT+TGG 0.530202 7:+13226676 None:intergenic
CACAGCAATGTTAACACCAT+CGG 0.531149 7:+13226821 None:intergenic
TTGTATCCTTTAACCTCCAA+AGG 0.534196 7:+13226216 None:intergenic
GTCAAGAACAGCAACTTCCT+CGG 0.536338 7:+13226728 None:intergenic
GAGGACTGAAAAGAGAGAAA+CGG 0.543639 7:+13228701 None:intergenic
AACTTATCATCAAAACCTGC+GGG 0.549743 7:-13226887 MsG0780036754.01.T01:CDS
TGCTAAGCTAGACGCTTCAC+CGG 0.556532 7:-13226616 MsG0780036754.01.T01:CDS
ATTGAAGACGTTCGACCCAA+CGG 0.561423 7:-13227477 MsG0780036754.01.T01:CDS
TTATGCAAGCTTTGAAGCAG+TGG 0.572426 7:-13226361 MsG0780036754.01.T01:CDS
CGGTAGCCAAGCTTACATGA+TGG 0.573036 7:-13226682 MsG0780036754.01.T01:CDS
TATGCAAGCTTTGAAGCAGT+GGG 0.574688 7:-13226360 MsG0780036754.01.T01:CDS
ATCCATCTTCAGGGGTGACG+TGG 0.577108 7:+13226388 None:intergenic
CAACATTTCAGAGTAGACCT+TGG 0.577948 7:+13226108 None:intergenic
CATCATGTAAGCTTGGCTAC+CGG 0.578005 7:+13226683 None:intergenic
AATGAAGTGCTTGGAGAAGA+CGG 0.582790 7:-13226177 MsG0780036754.01.T01:CDS
GAAACGGAGAGAAAGAGCGA+TGG 0.585934 7:+13228717 None:intergenic
GCAATTCTTAAGCTTGCCGA+TGG 0.593187 7:-13226837 MsG0780036754.01.T01:CDS
ATGATGGCTGCTCATCTCCA+AGG 0.593841 7:-13226125 MsG0780036754.01.T01:CDS
GGTAGCCAAGCTTACATGAT+GGG 0.595267 7:-13226681 MsG0780036754.01.T01:CDS
AGAAATCGAGAAGCATAGAT+CGG 0.600822 7:-13228534 MsG0780036754.01.T01:five_prime_UTR
AATGCAACAGAAAACTCAGC+TGG 0.608895 7:+13226276 None:intergenic
AATGAACTAATGGAGTCTAA+AGG 0.613513 7:-13227564 MsG0780036754.01.T01:exon
TCCTCGGAAAAGCTTCGATG+AGG 0.618294 7:+13226744 None:intergenic
CCGTTCATTGAGTACCCGCA+AGG 0.620321 7:+13226438 None:intergenic
CCTCGGAAAAGCTTCGATGA+GGG 0.624053 7:+13226745 None:intergenic
GGAAAAGCTTCGATGAGGGA+AGG 0.627007 7:+13226749 None:intergenic
TCACATATGTCAGATTTGGA+AGG 0.628596 7:+13226474 None:intergenic
CCTTGCGGGTACTCAATGAA+CGG 0.636080 7:-13226438 MsG0780036754.01.T01:CDS
GAACTAATGGAGTCTAAAGG+TGG 0.640546 7:-13227561 MsG0780036754.01.T01:exon
GACTTCGAATTTGAACCTTG+CGG 0.643472 7:-13226453 MsG0780036754.01.T01:CDS
CGGCAAGCTTAAGAATTGCA+GGG 0.643796 7:+13226841 None:intergenic
AAACTTATCATCAAAACCTG+CGG 0.648431 7:-13226888 MsG0780036754.01.T01:CDS
CTGGAGTGAGGATGAGAACG+AGG 0.648538 7:-13226085 MsG0780036754.01.T01:CDS
TCTGAAATGTTGCTGGAGTG+AGG 0.649297 7:-13226097 MsG0780036754.01.T01:CDS
GCAGCCATCATTTCGAACAA+AGG 0.652571 7:+13226137 None:intergenic
CATCATTTCGAACAAAGGTA+CGG 0.654774 7:+13226142 None:intergenic
GCATTGCACATTGATGCGAA+TGG 0.665215 7:-13226258 MsG0780036754.01.T01:CDS
GAGGTTAAAGGATACAACTG+TGG 0.681618 7:-13226210 MsG0780036754.01.T01:CDS
ATAACTGAATCCATCTTCAG+GGG 0.689618 7:+13226380 None:intergenic
GAGTGAGGATGAGAACGAGG+AGG 0.703166 7:-13226082 MsG0780036754.01.T01:CDS
GAAGACGTTCGACCCAACGG+TGG 0.734466 7:-13227474 MsG0780036754.01.T01:CDS
AAATCGGTGAGATACACTCG+CGG 0.764779 7:-13226798 MsG0780036754.01.T01:CDS
TCTTCAATGATGTAACCGAG+AGG 0.771142 7:+13227492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTTAAAATTAATCAA+AGG + Chr7:13227438-13227457 None:intergenic 10.0%
!! GCATAATAAAGAAAAAAAAA+GGG + Chr7:13227505-13227524 None:intergenic 15.0%
!! TATAGTATATAGTATAAGAT+TGG - Chr7:13227455-13227474 MsG0780036754.01.T01:CDS 15.0%
!! TGCATAATAAAGAAAAAAAA+AGG + Chr7:13227506-13227525 None:intergenic 15.0%
!!! CATGATTATTTTTCAATTTT+TGG - Chr7:13226471-13226490 MsG0780036754.01.T01:CDS 15.0%
!! AAAGGAATTGAAATTGAAAT+GGG + Chr7:13227420-13227439 None:intergenic 20.0%
!! ACAAAAAACAACAATAAGAA+AGG + Chr7:13226697-13226716 None:intergenic 20.0%
!! CAAAAAACAACAATAAGAAA+GGG + Chr7:13226696-13226715 None:intergenic 20.0%
!!! GTTTTGATTTTGTTTGATTT+AGG - Chr7:13226242-13226261 MsG0780036754.01.T01:CDS 20.0%
!!! TTTCATTTTTTGTTCTGTTT+AGG - Chr7:13226355-13226374 MsG0780036754.01.T01:CDS 20.0%
! AAAACTTGACAAATTTCCTT+TGG - Chr7:13228595-13228614 MsG0780036754.01.T01:intron 25.0%
! ATCAAACAAAATCAAAACAG+AGG + Chr7:13226240-13226259 None:intergenic 25.0%
! ATTTACACTTTCAATTGCAA+TGG - Chr7:13226860-13226879 MsG0780036754.01.T01:CDS 25.0%
! CAAAGGAATTGAAATTGAAA+TGG + Chr7:13227421-13227440 None:intergenic 25.0%
! TACCAATTTCACATAACAAT+TGG + Chr7:13227084-13227103 None:intergenic 25.0%
! TGTTCAAGATGTATTATTTC+AGG - Chr7:13226911-13226930 MsG0780036754.01.T01:CDS 25.0%
! TTCCAATTGTTATGTGAAAT+TGG - Chr7:13227079-13227098 MsG0780036754.01.T01:intron 25.0%
!! AAAGCATTTGATGATTGAAA+CGG - Chr7:13226594-13226613 MsG0780036754.01.T01:CDS 25.0%
!! ACTCACAGTTTTTAAACAAT+TGG + Chr7:13226322-13226341 None:intergenic 25.0%
!! TATTTCTGCGCAATTATTAT+TGG - Chr7:13227036-13227055 MsG0780036754.01.T01:intron 25.0%
!! TCTTTTCTGTTTGTTTCATT+TGG - Chr7:13226825-13226844 MsG0780036754.01.T01:CDS 25.0%
!! TTATAACATTTTGTAATCCC+TGG - Chr7:13227187-13227206 MsG0780036754.01.T01:intron 25.0%
!!! ATTTTGTTGTTTGTAGAGAA+AGG + Chr7:13227665-13227684 None:intergenic 25.0%
!!! GAGATAACTTTTTTCGAAAA+TGG - Chr7:13227757-13227776 MsG0780036754.01.T01:intron 25.0%
!!! TTTTGTTGTTTGTAGAGAAA+GGG + Chr7:13227664-13227683 None:intergenic 25.0%
AAACTTATCATCAAAACCTG+CGG - Chr7:13227939-13227958 MsG0780036754.01.T01:intron 30.0%
AAATCTCTGAATGAACTTGT+TGG - Chr7:13228506-13228525 MsG0780036754.01.T01:intron 30.0%
AAATGCACTTACAGAAATGA+AGG + Chr7:13226157-13226176 None:intergenic 30.0%
AATGAACTAATGGAGTCTAA+AGG - Chr7:13227263-13227282 MsG0780036754.01.T01:intron 30.0%
ACAATGAGAAGAATACATAG+AGG + Chr7:13226185-13226204 None:intergenic 30.0%
ATAGATGAATAAGCTTGACT+CGG + Chr7:13227913-13227932 None:intergenic 30.0%
ATGCTGATAAGTCACAAATT+TGG - Chr7:13228171-13228190 MsG0780036754.01.T01:intron 30.0%
ATTAGATAGTGAGTCAACAA+TGG + Chr7:13227866-13227885 None:intergenic 30.0%
GAAGAGAAAGAATTAGGTTT+CGG + Chr7:13226091-13226110 None:intergenic 30.0%
GTACGATCATTTACCAATAT+TGG - Chr7:13226882-13226901 MsG0780036754.01.T01:CDS 30.0%
TACAGAAATGAAGGAAATTG+AGG + Chr7:13226148-13226167 None:intergenic 30.0%
TGTTAACATTGCTGTGAAAT+CGG - Chr7:13228013-13228032 MsG0780036754.01.T01:intron 30.0%
TGTTGAAGAAAAAAGCAAAG+AGG + Chr7:13227635-13227654 None:intergenic 30.0%
TTACATATACCACACAGATT+TGG - Chr7:13226763-13226782 MsG0780036754.01.T01:CDS 30.0%
TTAGTCACAAAAATAGACCA+GGG + Chr7:13227207-13227226 None:intergenic 30.0%
TTGAACACATACACCAATAT+TGG + Chr7:13226898-13226917 None:intergenic 30.0%
TTTGTTTCATTTGGTTGCAT+AGG - Chr7:13226834-13226853 MsG0780036754.01.T01:CDS 30.0%
! AAATTTCCTTTGGAGGTTAA+AGG - Chr7:13228605-13228624 MsG0780036754.01.T01:intron 30.0%
! TAGTATAAGATTGGTTGATC+TGG - Chr7:13227464-13227483 MsG0780036754.01.T01:CDS 30.0%
!! TGACTGGTTTAGATAAAGAA+AGG - Chr7:13228261-13228280 MsG0780036754.01.T01:intron 30.0%
!! TGGGTTCTGATATAGTTTTT+AGG - Chr7:13227554-13227573 MsG0780036754.01.T01:CDS 30.0%
!!! AAACCATCCTGAGATTTTTT+GGG - Chr7:13227535-13227554 MsG0780036754.01.T01:CDS 30.0%
!!! TTTTGAAACGCATTGATGAT+TGG - Chr7:13226544-13226563 MsG0780036754.01.T01:intron 30.0%
AAAAATCTCAGGATGGTTTG+CGG + Chr7:13227534-13227553 None:intergenic 35.0%
AACAATGCACGTGTCAATAT+TGG + Chr7:13227117-13227136 None:intergenic 35.0%
AACTTATCATCAAAACCTGC+GGG - Chr7:13227940-13227959 MsG0780036754.01.T01:intron 35.0%
AAGAATTAGGTTTCGGAGAT+TGG + Chr7:13226084-13226103 None:intergenic 35.0%
ACTTGACAAATTTCCTTTGG+AGG - Chr7:13228598-13228617 MsG0780036754.01.T01:intron 35.0%
ATAACTGAATCCATCTTCAG+GGG + Chr7:13228450-13228469 None:intergenic 35.0%
ATCAGAACCCAAAAAATCTC+AGG + Chr7:13227545-13227564 None:intergenic 35.0%
CATAACTGAATCCATCTTCA+GGG + Chr7:13228451-13228470 None:intergenic 35.0%
CATCATTTCGAACAAAGGTA+CGG + Chr7:13228688-13228707 None:intergenic 35.0%
CGATTTCTTCTCAATGAATC+AGG + Chr7:13226281-13226300 None:intergenic 35.0%
GAAGAAAAAAGCAAAGAGGA+GGG + Chr7:13227631-13227650 None:intergenic 35.0%
GAAGTCACATATGTCAGATT+TGG + Chr7:13228360-13228379 None:intergenic 35.0%
GTGAAGTGTGAATGAACTAA+TGG - Chr7:13227253-13227272 MsG0780036754.01.T01:intron 35.0%
GTTAGTCACAAAAATAGACC+AGG + Chr7:13227208-13227227 None:intergenic 35.0%
GTTTCAGAATCTCGTCAATT+TGG + Chr7:13227831-13227850 None:intergenic 35.0%
TACTCAATGAACGGAATTGA+AGG - Chr7:13228398-13228417 MsG0780036754.01.T01:intron 35.0%
TCACATATGTCAGATTTGGA+AGG + Chr7:13228356-13228375 None:intergenic 35.0%
TGAAGAAAAAAGCAAAGAGG+AGG + Chr7:13227632-13227651 None:intergenic 35.0%
TTCGGAGATTGGAATTGATT+TGG + Chr7:13226073-13226092 None:intergenic 35.0%
TTGTATCCTTTAACCTCCAA+AGG + Chr7:13228614-13228633 None:intergenic 35.0%
! AATCTCGTCAATTTGGTCTT+TGG + Chr7:13227824-13227843 None:intergenic 35.0%
! AGAAATCGAGAAGCATAGAT+CGG - Chr7:13226293-13226312 MsG0780036754.01.T01:CDS 35.0%
! AGGTTTGATGACTAGAATTC+TGG - Chr7:13228318-13228337 MsG0780036754.01.T01:intron 35.0%
! TCGGAGATTGGAATTGATTT+GGG + Chr7:13226072-13226091 None:intergenic 35.0%
! TTGATGATTGAAACGGATCT+GGG - Chr7:13226601-13226620 MsG0780036754.01.T01:CDS 35.0%
! TTTGATGATTGAAACGGATC+TGG - Chr7:13226600-13226619 MsG0780036754.01.T01:CDS 35.0%
!! ATGACTAGAATTCTGGAATC+AGG - Chr7:13228325-13228344 MsG0780036754.01.T01:intron 35.0%
!! TCTGAATGAACTTGTTGGAA+GGG - Chr7:13228511-13228530 MsG0780036754.01.T01:intron 35.0%
!!! CAAACCATCCTGAGATTTTT+TGG - Chr7:13227534-13227553 MsG0780036754.01.T01:CDS 35.0%
!!! GTTTTGAAGGCTATGAAAAG+AGG - Chr7:13227731-13227750 MsG0780036754.01.T01:intron 35.0%
!!! TATTTTGGCAAACTAGGTTC+CGG - Chr7:13228125-13228144 MsG0780036754.01.T01:intron 35.0%
AACCAGTCATGCACATTTCA+AGG + Chr7:13228250-13228269 None:intergenic 40.0%
AAGACAGAAGAATCTTCAGC+AGG - Chr7:13228298-13228317 MsG0780036754.01.T01:intron 40.0%
AAGGATACAACTGTGGAGAA+AGG - Chr7:13228624-13228643 MsG0780036754.01.T01:intron 40.0%
AATGCAACAGAAAACTCAGC+TGG + Chr7:13228554-13228573 None:intergenic 40.0%
ACCATGACAAACTCAGCTAT+CGG - Chr7:13227709-13227728 MsG0780036754.01.T01:intron 40.0%
ACTTCGAATTTGAACCTTGC+GGG - Chr7:13228375-13228394 MsG0780036754.01.T01:intron 40.0%
CAACATTTCAGAGTAGACCT+TGG + Chr7:13228722-13228741 None:intergenic 40.0%
CACAGCAATGTTAACACCAT+CGG + Chr7:13228009-13228028 None:intergenic 40.0%
CGTACCTTTGTTCGAAATGA+TGG - Chr7:13228686-13228705 MsG0780036754.01.T01:five_prime_UTR 40.0%
GAACCCAAAAAATCTCAGGA+TGG + Chr7:13227541-13227560 None:intergenic 40.0%
GAACTAATGGAGTCTAAAGG+TGG - Chr7:13227266-13227285 MsG0780036754.01.T01:intron 40.0%
GACTTCGAATTTGAACCTTG+CGG - Chr7:13228374-13228393 MsG0780036754.01.T01:intron 40.0%
GAGGACTGAAAAGAGAGAAA+CGG + Chr7:13226129-13226148 None:intergenic 40.0%
GAGGTTAAAGGATACAACTG+TGG - Chr7:13228617-13228636 MsG0780036754.01.T01:intron 40.0%
GCATAACTGAATCCATCTTC+AGG + Chr7:13228452-13228471 None:intergenic 40.0%
GCGATGGAAGAGAAAGAATT+AGG + Chr7:13226097-13226116 None:intergenic 40.0%
TCATGGTCATCTTGACTCAA+AGG + Chr7:13227696-13227715 None:intergenic 40.0%
TCTTCAATGATGTAACCGAG+AGG + Chr7:13227338-13227357 None:intergenic 40.0%
! AATGAAGTGCTTGGAGAAGA+CGG - Chr7:13228650-13228669 MsG0780036754.01.T01:intron 40.0%
! AATTTTTCTACGCCACCGTT+GGG + Chr7:13227368-13227387 None:intergenic 40.0%
! GAAAGGATCAATGAAGTGCT+TGG - Chr7:13228641-13228660 MsG0780036754.01.T01:intron 40.0%
! GCTGTTCTTGACAGCTATTT+TGG - Chr7:13228110-13228129 MsG0780036754.01.T01:intron 40.0%
! TTTTTGTACGAAGCTCCTCT+CGG - Chr7:13227320-13227339 MsG0780036754.01.T01:intron 40.0%
!! CTCTGAATGAACTTGTTGGA+AGG - Chr7:13228510-13228529 MsG0780036754.01.T01:intron 40.0%
!! TATGCAAGCTTTGAAGCAGT+GGG - Chr7:13228467-13228486 MsG0780036754.01.T01:intron 40.0%
!! TGAATAAGCTTGACTCGGAT+AGG + Chr7:13227908-13227927 None:intergenic 40.0%
!! TTATGCAAGCTTTGAAGCAG+TGG - Chr7:13228466-13228485 MsG0780036754.01.T01:intron 40.0%
!!! AACTCAGCTATCGGTTTTGA+AGG - Chr7:13227718-13227737 MsG0780036754.01.T01:intron 40.0%
!!! GACAGCTATTTTGGCAAACT+AGG - Chr7:13228119-13228138 MsG0780036754.01.T01:intron 40.0%
AAATCGGTGAGATACACTCG+CGG - Chr7:13228029-13228048 MsG0780036754.01.T01:intron 45.0%
ACCGATAGCTGAGTTTGTCA+TGG + Chr7:13227713-13227732 None:intergenic 45.0%
AGGAGCTTCGTACAAAAAGG+AGG + Chr7:13227318-13227337 None:intergenic 45.0%
AGGGAGGACAAGAAAAAGAG+AGG + Chr7:13227612-13227631 None:intergenic 45.0%
ATTGAAGACGTTCGACCCAA+CGG - Chr7:13227350-13227369 MsG0780036754.01.T01:intron 45.0%
CATCACCCATCATGTAAGCT+TGG + Chr7:13228154-13228173 None:intergenic 45.0%
CATCATGTAAGCTTGGCTAC+CGG + Chr7:13228147-13228166 None:intergenic 45.0%
CGGCAAGCTTAAGAATTGCA+GGG + Chr7:13227989-13228008 None:intergenic 45.0%
GAAAAAAGCAAAGAGGAGGG+AGG + Chr7:13227628-13227647 None:intergenic 45.0%
GAGAGGAGCTTCGTACAAAA+AGG + Chr7:13227321-13227340 None:intergenic 45.0%
GAGGACAAGAAAAAGAGAGG+AGG + Chr7:13227609-13227628 None:intergenic 45.0%
GCAATTCTTAAGCTTGCCGA+TGG - Chr7:13227990-13228009 MsG0780036754.01.T01:intron 45.0%
GCAGCCATCATTTCGAACAA+AGG + Chr7:13228693-13228712 None:intergenic 45.0%
GCATTGCACATTGATGCGAA+TGG - Chr7:13228569-13228588 MsG0780036754.01.T01:intron 45.0%
GCTATGCAACCAAATCTGTG+TGG + Chr7:13226775-13226794 None:intergenic 45.0%
GGTAGCCAAGCTTACATGAT+GGG - Chr7:13228146-13228165 MsG0780036754.01.T01:intron 45.0%
GTCAAGAACAGCAACTTCCT+CGG + Chr7:13228102-13228121 None:intergenic 45.0%
TCAACAATGGTGCATTCTGC+TGG + Chr7:13227853-13227872 None:intergenic 45.0%
TCGGCAAGCTTAAGAATTGC+AGG + Chr7:13227990-13228009 None:intergenic 45.0%
TGAGAACGAGGAGGAAGTTA+AGG - Chr7:13228754-13228773 MsG0780036754.01.T01:five_prime_UTR 45.0%
! GAATTTTTCTACGCCACCGT+TGG + Chr7:13227369-13227388 None:intergenic 45.0%
! TCTGAAATGTTGCTGGAGTG+AGG - Chr7:13228730-13228749 MsG0780036754.01.T01:five_prime_UTR 45.0%
! TTTGGTCTTTGGACAACGCT+CGG + Chr7:13227813-13227832 None:intergenic 45.0%
!! GGTCTACTCTGAAATGTTGC+TGG - Chr7:13228723-13228742 MsG0780036754.01.T01:five_prime_UTR 45.0%
!! AAAAATAAAAATAAAAAACT+AGG + Chr7:13227016-13227035 None:intergenic 5.0%
AAGCAATTTCGTAGTCCCGC+AGG + Chr7:13227958-13227977 None:intergenic 50.0%
ATGATGGCTGCTCATCTCCA+AGG - Chr7:13228702-13228721 MsG0780036754.01.T01:five_prime_UTR 50.0%
CCTCGGAAAAGCTTCGATGA+GGG + Chr7:13228085-13228104 None:intergenic 50.0%
CCTTGCGGGTACTCAATGAA+CGG - Chr7:13228389-13228408 MsG0780036754.01.T01:intron 50.0%
CGGTAGCCAAGCTTACATGA+TGG - Chr7:13228145-13228164 MsG0780036754.01.T01:intron 50.0%
GAAACGGAGAGAAAGAGCGA+TGG + Chr7:13226113-13226132 None:intergenic 50.0%
GGAAAAGCTTCGATGAGGGA+AGG + Chr7:13228081-13228100 None:intergenic 50.0%
GGCCTTGAAATGTGCATGAC+TGG - Chr7:13228245-13228264 MsG0780036754.01.T01:intron 50.0%
TCAAGGCCATAGACAGCTTC+CGG + Chr7:13228233-13228252 None:intergenic 50.0%
TCCTCGGAAAAGCTTCGATG+AGG + Chr7:13228086-13228105 None:intergenic 50.0%
TGCTAAGCTAGACGCTTCAC+CGG - Chr7:13228211-13228230 MsG0780036754.01.T01:intron 50.0%
TTCTCTGACCCTGCTGGATT+AGG - Chr7:13227784-13227803 MsG0780036754.01.T01:intron 50.0%
ATCCACGTCACCCCTGAAGA+TGG - Chr7:13228437-13228456 MsG0780036754.01.T01:intron 55.0%
ATCCATCTTCAGGGGTGACG+TGG + Chr7:13228442-13228461 None:intergenic 55.0%
CCGTTCATTGAGTACCCGCA+AGG + Chr7:13228392-13228411 None:intergenic 55.0%
CGCGGAAGCTTCATCTTTCC+TGG - Chr7:13228047-13228066 MsG0780036754.01.T01:intron 55.0%
CTGGAGTGAGGATGAGAACG+AGG - Chr7:13228742-13228761 MsG0780036754.01.T01:five_prime_UTR 55.0%
GAGTGAGGATGAGAACGAGG+AGG - Chr7:13228745-13228764 MsG0780036754.01.T01:five_prime_UTR 55.0%
GCTTCACCGGAAGCTGTCTA+TGG - Chr7:13228224-13228243 MsG0780036754.01.T01:intron 55.0%
TGAGGGAAGGATTGAGCTCC+AGG + Chr7:13228068-13228087 None:intergenic 55.0%
TTCAGGGGTGACGTGGATAG+TGG + Chr7:13228435-13228454 None:intergenic 55.0%
! CCCTCATCGAAGCTTTTCCG+AGG - Chr7:13228082-13228101 MsG0780036754.01.T01:intron 55.0%
! GGTGTTTTCTCTGACCCTGC+TGG - Chr7:13227778-13227797 MsG0780036754.01.T01:intron 55.0%
CTCGGAGGCCTAATCCAGCA+GGG + Chr7:13227795-13227814 None:intergenic 60.0%
GAAGACGTTCGACCCAACGG+TGG - Chr7:13227353-13227372 MsG0780036754.01.T01:intron 60.0%
GGTCTTTGGACAACGCTCGG+AGG + Chr7:13227810-13227829 None:intergenic 60.0%
GCTCGGAGGCCTAATCCAGC+AGG + Chr7:13227796-13227815 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 13226065 13228784 13226065 ID=MsG0780036754.01;Name=MsG0780036754.01
Chr7 mRNA 13226065 13228784 13226065 ID=MsG0780036754.01.T01;Parent=MsG0780036754.01;Name=MsG0780036754.01.T01;_AED=0.45;_eAED=0.45;_QI=190|0.5|0.6|1|0.5|0.4|5|0|313
Chr7 exon 13226065 13226516 13226065 ID=MsG0780036754.01.T01:exon:2730;Parent=MsG0780036754.01.T01
Chr7 exon 13226583 13226934 13226583 ID=MsG0780036754.01.T01:exon:2729;Parent=MsG0780036754.01.T01
Chr7 exon 13227440 13227595 13227440 ID=MsG0780036754.01.T01:exon:2728;Parent=MsG0780036754.01.T01
Chr7 exon 13228514 13228585 13228514 ID=MsG0780036754.01.T01:exon:2727;Parent=MsG0780036754.01.T01
Chr7 exon 13228685 13228784 13228685 ID=MsG0780036754.01.T01:exon:2726;Parent=MsG0780036754.01.T01
Chr7 five_prime_UTR 13228685 13228784 13228685 ID=MsG0780036754.01.T01:five_prime_utr;Parent=MsG0780036754.01.T01
Chr7 five_prime_UTR 13228514 13228585 13228514 ID=MsG0780036754.01.T01:five_prime_utr;Parent=MsG0780036754.01.T01
Chr7 five_prime_UTR 13227578 13227595 13227578 ID=MsG0780036754.01.T01:five_prime_utr;Parent=MsG0780036754.01.T01
Chr7 CDS 13227440 13227577 13227440 ID=MsG0780036754.01.T01:cds;Parent=MsG0780036754.01.T01
Chr7 CDS 13226583 13226934 13226583 ID=MsG0780036754.01.T01:cds;Parent=MsG0780036754.01.T01
Chr7 CDS 13226065 13226516 13226065 ID=MsG0780036754.01.T01:cds;Parent=MsG0780036754.01.T01
Gene Sequence

>MsG0780036754.01.T01

ATGGAGTCTAAAGGTGGTAAAAAGAAGTCTAGCAGTAGTAATTCCTCCTTTTTGTACGAAGCTCCTCTCGGTTACATCATTGAAGACGTTCGACCCAACGGTGGCGTAGAAAAATTCAAATCTGCTGATTACTCAAACTCAAGCTTATTCATCTATGCGTACAAACTTATCATCAAAACCTGCGGGACTACGAAATTGCTTCTGTCTATCCCTGCAATTCTTAAGCTTGCCGATGGTGTTAACATTGCTGTGAAATCGGTGAGATACACTCGCGGAAGCTTCATCTTTCCTGGAGCTCAATCCTTCCCTCATCGAAGCTTTTCCGAGGAAGTTGCTGTTCTTGACAGCTATTTTGGCAAACTAGGTTCCGGTAGCCAAGCTTACATGATGGGTGATGCTGATAAGTCACAAATTTGGCACATTTACTCTGCTAGTGCTAAGCTAGACGCTTCACCGGAAGCTGTCTATGGCCTTGAAATGTGCATGACTGAATTCTGGAATCAGGAAGATCCTTCCAAATCTGACATATGTGACTTCGAATTTGAACCTTGCGGGTACTCAATGAACGGAATTGAAGGAAGTGCAATATCCACTATCCACGTCACCCCTGAAGATGGATTCAGTTATGCAAGCTTTGAAGCAGTGGGTTATAACTTTGAAGAGAAATCTCTGAATGAACTTGTTGGAAGGGTTTTAGCATGTTTCTATCCAGCTGAGTTTTCTGTTGCATTGCACATTGATGCGAATGGTGAAAAACTTGACAAATTTCCTTTGGAGGTTAAAGGATACAACTGTGGAGAAAGGATCAATGAAGTGCTTGGAGAAGACGGTGCTGTTGTGTACCGTACCTTTGTTCGAAATGATGGCTGCTCATCTCCAAGGTCTACTCTGAAATGTTGCTGGAGTGAGGATGAGAACGAGGAGGAAGTTAAGGAGATATAA
Protein sequence

>MsG0780036754.01.T01

MESKGGKKKSSSSNSSFLYEAPLGYIIEDVRPNGGVEKFKSADYSNSSLFIYAYKLIIKTCGTTKLLLSIPAILKLADGVNIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDSYFGKLGSGSQAYMMGDADKSQIWHIYSASAKLDASPEAVYGLEMCMTEFWNQEDPSKSDICDFEFEPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYNFEEKSLNELVGRVLACFYPAEFSVALHIDANGEKLDKFPLEVKGYNCGERINEVLGEDGAVVYRTFVRNDGCSSPRSTLKCCWSEDENEEEVKEI*