AlfalfaGEDB | MsG0780036756.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036756.01

KEGG: K01611
GO: GO:0004014 GO:0006597 GO:0008295
PFAM: PF01536

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036756.01.T01	XP_024626954.2	97.778	360	8	0	1	360	1	360	0	724
MsG0780036756.01.T02	XP_024626954.2	97.778	360	8	0	1	360	1	360	0	724

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036756.01.T01	Q96471	69.167	360	110	1	1	359	1	360	0	520
MsG0780036756.01.T02	Q96471	69.167	360	110	1	1	359	1	360	0	520

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036756.01.T01	A0A396GU52	97.778	360	8	0	1	360	1	360	0.0	724
MsG0780036756.01.T02	A0A396GU52	97.778	360	8	0	1	360	1	360	0.0	724

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180006079.01	MsG0780036756.01	0.810560	1.084775e-50	6.560091e-48
MsG0280007256.01	MsG0780036756.01	0.800468	1.421057e-48	6.621645e-46
MsG0380013116.01	MsG0780036756.01	0.827836	1.255409e-54	1.226023e-51
MsG0380016609.01	MsG0780036756.01	0.835603	1.524189e-56	1.873046e-53
MsG0380016656.01	MsG0780036756.01	0.821080	4.882119e-53	3.932854e-50
MsG0780036754.01	MsG0780036756.01	0.901969	1.563921e-78	2.165458e-74
MsG0780036755.01	MsG0780036756.01	0.941685	2.704783e-101	3.222548e-96
MsG0780036756.01	MsG0880043763.01	0.837740	4.348343e-57	5.701947e-54

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036756.01.T01	MTR_0003s0660	97.222	360	10	0	1	360	47	406	0.0	719
MsG0780036756.01.T01	MTR_7g018290	96.667	360	12	0	1	360	1	360	0.0	714
MsG0780036756.01.T01	MTR_7g018310	89.112	349	17	1	1	349	47	374	0.0	626
MsG0780036756.01.T01	MTR_7g018320	83.611	360	9	2	1	360	47	356	0.0	592
MsG0780036756.01.T01	MTR_0076s0020	69.014	355	107	3	3	356	1	353	3.69e-177	496
MsG0780036756.01.T01	MTR_8g069905	64.103	351	124	2	1	350	1	350	3.46e-162	459
MsG0780036756.01.T01	MTR_2g020990	43.529	340	174	8	9	332	5	342	3.96e-81	251
MsG0780036756.01.T01	MTR_4g118320	41.056	341	177	7	9	331	5	339	4.44e-78	243
MsG0780036756.01.T02	MTR_0003s0660	97.222	360	10	0	1	360	47	406	0.0	719
MsG0780036756.01.T02	MTR_7g018290	96.667	360	12	0	1	360	1	360	0.0	714

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036756.01.T01	AT3G02470	64.033	367	119	6	3	357	1	366	1.24e-163	462
MsG0780036756.01.T01	AT3G02470	64.033	367	119	6	3	357	1	366	1.24e-163	462
MsG0780036756.01.T01	AT3G02470	64.033	367	119	6	3	357	1	366	1.24e-163	462
MsG0780036756.01.T01	AT5G15950	64.088	362	125	4	3	359	1	362	4.34e-161	456
MsG0780036756.01.T01	AT5G15950	64.088	362	125	4	3	359	1	362	4.34e-161	456
MsG0780036756.01.T01	AT3G25570	65.330	349	117	3	3	347	1	349	2.53e-157	446
MsG0780036756.01.T01	AT3G25570	65.330	349	117	3	3	347	1	349	2.53e-157	446
MsG0780036756.01.T01	AT5G18930	43.068	339	176	7	9	331	5	342	5.00e-85	261
MsG0780036756.01.T01	AT3G17717	50.450	111	53	2	182	291	18	127	2.96e-30	112
MsG0780036756.01.T02	AT3G02470	64.033	367	119	6	3	357	1	366	1.24e-163	462

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Find 3 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGAATTCTGATTCATAAAAG+GGG	0.597719	7:+13245503	MsG0780036756.01.T02:five_prime_UTR
CAGAATTCTGATTCATAAAA+GGG	0.351803	7:+13245502	MsG0780036756.01.T02:five_prime_UTR
TCAGAATTCTGATTCATAAA+AGG	0.183771	7:+13245501	MsG0780036756.01.T02:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTATCATCAAAACCTG+CGG	+	Chr7:13247190-13247209	MsG0780036756.01.T02:CDS	30.0%
AAATCTCTGAATGAACTTGT+TGG	+	Chr7:13247760-13247779	MsG0780036756.01.T02:CDS	30.0%
AACAATATGTGAAAACACGA+TGG	-	Chr7:13245800-13245819	None:intergenic	30.0%
AATGAACTAATGGAGTCAAA+AGG	+	Chr7:13246541-13246560	MsG0780036756.01.T02:five_prime_UTR	30.0%
ACAGAGAATGAAGAAAATTG+AGG	-	Chr7:13245361-13245380	None:intergenic	30.0%
ATAGATGAATAAGCTTGACT+CGG	-	Chr7:13247164-13247183	None:intergenic	30.0%
ATTAGATAGTGAGTCAACAA+TGG	-	Chr7:13247116-13247135	None:intergenic	30.0%
CAGTAATTGGAAAGAAATCA+AGG	-	Chr7:13245863-13245882	None:intergenic	30.0%
CTCACTATCTAATGATTATG+TGG	+	Chr7:13247123-13247142	MsG0780036756.01.T02:CDS	30.0%
CTTGATTTCTTTCCAATTAC+TGG	+	Chr7:13245861-13245880	MsG0780036756.01.T02:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	13245295	13248152	13245295	ID=MsG0780036756.01;Name=MsG0780036756.01
Chr7	mRNA	13245295	13248152	13245295	ID=MsG0780036756.01.T01;Parent=MsG0780036756.01;Name=MsG0780036756.01.T01;_AED=0.47;_eAED=0.47;_QI=450\|1\|1\|1\|0\|0\|5\|114\|360
Chr7	exon	13245490	13245515	13245490	ID=MsG0780036756.01.T01:exon:2706;Parent=MsG0780036756.01.T01
Chr7	exon	13245537	13245566	13245537	ID=MsG0780036756.01.T01:exon:2707;Parent=MsG0780036756.01.T01
Chr7	five_prime_UTR	13245295	13245378	13245295	ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7	five_prime_UTR	13245490	13245515	13245490	ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7	five_prime_UTR	13245537	13245566	13245537	ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7	five_prime_UTR	13246530	13246687	13246530	ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7	five_prime_UTR	13246804	13246955	13246804	ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7	CDS	13246956	13248038	13246956	ID=MsG0780036756.01.T01:cds;Parent=MsG0780036756.01.T01
Chr7	three_prime_UTR	13248039	13248152	13248039	ID=MsG0780036756.01.T01:three_prime_utr;Parent=MsG0780036756.01.T01
Chr7	mRNA	13245295	13248152	13245295	ID=MsG0780036756.01.T02;Parent=MsG0780036756.01;Name=MsG0780036756.01.T02;_AED=0.47;_eAED=0.47;_QI=471\|1\|1\|1\|0\|0\|4\|114\|360
Chr7	exon	13245490	13245566	13245490	ID=MsG0780036756.01.T02:exon:2710;Parent=MsG0780036756.01.T02
Chr7	five_prime_UTR	13245295	13245378	13245295	ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7	five_prime_UTR	13245490	13245566	13245490	ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7	five_prime_UTR	13246530	13246687	13246530	ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7	five_prime_UTR	13246804	13246955	13246804	ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7	CDS	13246956	13248038	13246956	ID=MsG0780036756.01.T02:cds;Parent=MsG0780036756.01.T02
Chr7	three_prime_UTR	13248039	13248152	13248039	ID=MsG0780036756.01.T02:three_prime_utr;Parent=MsG0780036756.01.T02

Gene Sequence

>MsG0780036756.01.T02

ATGACCATGACAAACTCAGCTATCGGTTTTGAAGGCTATGAAAAGAGGCTTGAGATAACTTTTTTCGAAAACGGTGTTTTCTCTGATCCTGCTGGATTAGGCCTCCGAGCATTGTCCAGAGACCAAATTGACGAGATTCTGAAACCAGCAGAATGCACCATTGTTGACTCACTATCTAATGATTATGTGGATTCATATGTTCTTTCCGAGTCAAGCTTATTCATCTATGCGTACAAACTTATCATCAAAACCTGCGGGACTACGAAATTGCTTCTGTCTATCCCTGCAATTCTCAAGCTTGCCGATGGTCTTAACATTGCTGTGAAATCGGTGAGATACACTCGCGGAAGTTTCATTTTTCCTGGAGCTCAATCGTTCCCTCACCGTAGCTTTTCCGAGGAAGTTGCTGTTCTTGACAGCTATTTTGGCAAACTAGGTTCTGGTAGCCAAGCTTACATGATGGGTGATGATGATAAGTCACAAATTTGGCACATTTATTCTGCCAGTGCTAAGCTAGAAGCTTCACCGGAAGCTGTCTATGGCCTTGAAATGTGCATGACTGGTTTAGATAAAGAAAAGGCATTAGTGTTTTTCAAGACAGATGCATCTTCAGCAGGTTTGATGACTAAGAATTCTGGAATCAGGAAGATCCTTCCAAAATCTGACATATGCGACTTCGAATTTGAACCTTGCGGGTACTCAATGAACGGAATTGAAGGAAGTGCAATATCCACTATCCATGTCACCCCTGAAGATGGATTCAGTTATGCAAGCTTTGAAGCAGTGGGTTATGACTACGAAGAGAAATCTCTGAATGAACTTGTTGGAAGGGTTTTAGCATGTTTCTATCCAGCTGAGTTTTCTGTTGCATTGCACATTGATACAAATGGTGAAAAACTTGACAAATTTCCTTTGGAGGTTAAAGGATACAACTGTGGAGAGAGGATCAATGAAGTGCTTGGAGAAGACGGTGCAGTCGTTTACCGTACCTTTGTTCGAAACGATGGCTGCTCATCTCCAAGGTCTACTCTGAAATGCTGCTGGAGTGAGGATGAGAACGAGGAGGAAGTTAAGGAGATATAA

>MsG0780036756.01.T01

Protein sequence

>MsG0780036756.01.T02

MTMTNSAIGFEGYEKRLEITFFENGVFSDPAGLGLRALSRDQIDEILKPAECTIVDSLSNDYVDSYVLSESSLFIYAYKLIIKTCGTTKLLLSIPAILKLADGLNIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDSYFGKLGSGSQAYMMGDDDKSQIWHIYSASAKLEASPEAVYGLEMCMTGLDKEKALVFFKTDASSAGLMTKNSGIRKILPKSDICDFEFEPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYDYEEKSLNELVGRVLACFYPAEFSVALHIDTNGEKLDKFPLEVKGYNCGERINEVLGEDGAVVYRTFVRNDGCSSPRSTLKCCWSEDENEEEVKEI*

>MsG0780036756.01.T01