AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036756.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036756.01.T02 MTR_0003s0660 97.222 360 10 0 1 360 47 406 0.0 719
MsG0780036756.01.T02 MTR_7g018290 96.667 360 12 0 1 360 1 360 0.0 714
MsG0780036756.01.T02 MTR_7g018310 89.112 349 17 1 1 349 47 374 0.0 626
MsG0780036756.01.T02 MTR_7g018320 83.611 360 9 2 1 360 47 356 0.0 592
MsG0780036756.01.T02 MTR_0076s0020 69.014 355 107 3 3 356 1 353 3.69e-177 496
MsG0780036756.01.T02 MTR_8g069905 64.103 351 124 2 1 350 1 350 3.46e-162 459
MsG0780036756.01.T02 MTR_2g020990 43.529 340 174 8 9 332 5 342 3.96e-81 251
MsG0780036756.01.T02 MTR_4g118320 41.056 341 177 7 9 331 5 339 4.44e-78 243
MsG0780036756.01.T01 MTR_0003s0660 97.222 360 10 0 1 360 47 406 0.0 719
MsG0780036756.01.T01 MTR_7g018290 96.667 360 12 0 1 360 1 360 0.0 714
MsG0780036756.01.T01 MTR_7g018310 89.112 349 17 1 1 349 47 374 0.0 626
MsG0780036756.01.T01 MTR_7g018320 83.611 360 9 2 1 360 47 356 0.0 592
MsG0780036756.01.T01 MTR_0076s0020 69.014 355 107 3 3 356 1 353 3.69e-177 496
MsG0780036756.01.T01 MTR_8g069905 64.103 351 124 2 1 350 1 350 3.46e-162 459
MsG0780036756.01.T01 MTR_2g020990 43.529 340 174 8 9 332 5 342 3.96e-81 251
MsG0780036756.01.T01 MTR_4g118320 41.056 341 177 7 9 331 5 339 4.44e-78 243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036756.01.T02 AT3G02470 64.033 367 119 6 3 357 1 366 1.24e-163 462
MsG0780036756.01.T02 AT3G02470 64.033 367 119 6 3 357 1 366 1.24e-163 462
MsG0780036756.01.T02 AT3G02470 64.033 367 119 6 3 357 1 366 1.24e-163 462
MsG0780036756.01.T02 AT5G15950 64.088 362 125 4 3 359 1 362 4.34e-161 456
MsG0780036756.01.T02 AT5G15950 64.088 362 125 4 3 359 1 362 4.34e-161 456
MsG0780036756.01.T02 AT3G25570 65.330 349 117 3 3 347 1 349 2.53e-157 446
MsG0780036756.01.T02 AT3G25570 65.330 349 117 3 3 347 1 349 2.53e-157 446
MsG0780036756.01.T02 AT5G18930 43.068 339 176 7 9 331 5 342 5.00e-85 261
MsG0780036756.01.T02 AT3G17717 50.450 111 53 2 182 291 18 127 2.96e-30 112
MsG0780036756.01.T01 AT3G02470 64.033 367 119 6 3 357 1 366 1.24e-163 462
MsG0780036756.01.T01 AT3G02470 64.033 367 119 6 3 357 1 366 1.24e-163 462
MsG0780036756.01.T01 AT3G02470 64.033 367 119 6 3 357 1 366 1.24e-163 462
MsG0780036756.01.T01 AT5G15950 64.088 362 125 4 3 359 1 362 4.34e-161 456
MsG0780036756.01.T01 AT5G15950 64.088 362 125 4 3 359 1 362 4.34e-161 456
MsG0780036756.01.T01 AT3G25570 65.330 349 117 3 3 347 1 349 2.53e-157 446
MsG0780036756.01.T01 AT3G25570 65.330 349 117 3 3 347 1 349 2.53e-157 446
MsG0780036756.01.T01 AT5G18930 43.068 339 176 7 9 331 5 342 5.00e-85 261
MsG0780036756.01.T01 AT3G17717 50.450 111 53 2 182 291 18 127 2.96e-30 112

Find 3 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAATTCTGATTCATAAA+AGG 0.183771 7:+13245501 MsG0780036756.01.T02:five_prime_UTR
CAGAATTCTGATTCATAAAA+GGG 0.351803 7:+13245502 MsG0780036756.01.T02:five_prime_UTR
AGAATTCTGATTCATAAAAG+GGG 0.597719 7:+13245503 MsG0780036756.01.T02:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTGATTATAAATTTTTGA+TGG + Chr7:13246019-13246038 MsG0780036756.01.T02:intron 10.0%
!! AAATCATTAAGAAAAACTAT+TGG - Chr7:13246301-13246320 None:intergenic 15.0%
!! ATAGTTTAAATTGTTAAAAC+TGG + Chr7:13246137-13246156 MsG0780036756.01.T02:intron 15.0%
!!! ATTTTAAAACAAAAGGAAAA+TGG - Chr7:13245977-13245996 None:intergenic 15.0%
!!! TTTTTTTCTGTTTTTGATTT+AGG + Chr7:13245468-13245487 MsG0780036756.01.T02:intron 15.0%
!! AAAAGAAATGAGAGAAAAAT+TGG - Chr7:13245319-13245338 None:intergenic 20.0%
!! AAAGGAATAGAAATTGAAAT+GGG - Chr7:13246701-13246720 None:intergenic 20.0%
!! ACAAAAGCTCAAATTTATTT+AGG - Chr7:13248091-13248110 None:intergenic 20.0%
!! ACAATGTTAACATTAATCAA+AGG - Chr7:13246719-13246738 None:intergenic 20.0%
!! CAAATTTATTTAGGTAACAA+TGG - Chr7:13248082-13248101 None:intergenic 20.0%
!! TGTAGTATATAGTATAAGAT+TGG + Chr7:13246736-13246755 MsG0780036756.01.T02:intron 20.0%
!! TTGATTTCACATAATTGATA+TGG + Chr7:13245688-13245707 MsG0780036756.01.T02:intron 20.0%
!!! CATATTTCTGGATTATTTTT+TGG - Chr7:13246450-13246469 None:intergenic 20.0%
!!! CATGTTTCTCAAAATTTTTA+TGG + Chr7:13246075-13246094 MsG0780036756.01.T02:intron 20.0%
!!! CTTTCAGATTTTAAAACAAA+AGG - Chr7:13245984-13246003 None:intergenic 20.0%
!!! TTTTGTAGTTTGTAGAATTA+AGG - Chr7:13246915-13246934 None:intergenic 20.0%
! AAAACTTGACAAATTTCCTT+TGG + Chr7:13247849-13247868 MsG0780036756.01.T02:CDS 25.0%
! AACAACACATACATCAATAT+TGG - Chr7:13246225-13246244 None:intergenic 25.0%
! AATGAGAGAAAAATTGGAAT+TGG - Chr7:13245313-13245332 None:intergenic 25.0%
! AGAATTCTGATTCATAAAAG+GGG + Chr7:13245503-13245522 MsG0780036756.01.T02:five_prime_UTR 25.0%
! AGCAAAACATGAAATCAAAA+AGG - Chr7:13245408-13245427 None:intergenic 25.0%
! ATGATGATAAGTCACAAATT+TGG + Chr7:13247422-13247441 MsG0780036756.01.T02:CDS 25.0%
! CAAAGGAATAGAAATTGAAA+TGG - Chr7:13246702-13246721 None:intergenic 25.0%
! CACTGCATAATAAAGAAAAA+AGG - Chr7:13246786-13246805 None:intergenic 25.0%
! CAGAATTCTGATTCATAAAA+GGG + Chr7:13245502-13245521 MsG0780036756.01.T02:five_prime_UTR 25.0%
! TACAAAAATAAGCCAGTAAT+TGG - Chr7:13245876-13245895 None:intergenic 25.0%
! TCACTTTCATTTGTAACTAT+TGG + Chr7:13246390-13246409 MsG0780036756.01.T02:intron 25.0%
! TCAGAATTCTGATTCATAAA+AGG + Chr7:13245501-13245520 MsG0780036756.01.T02:five_prime_UTR 25.0%
! TTTGATTATTGAAACGAATC+TGG + Chr7:13245930-13245949 MsG0780036756.01.T02:intron 25.0%
!! TAGTATAAGATTGGTTGATT+TGG + Chr7:13246745-13246764 MsG0780036756.01.T02:intron 25.0%
!! TGTTAAAACTGGTGTATTTT+GGG + Chr7:13246148-13246167 MsG0780036756.01.T02:intron 25.0%
!! TGTTCTTAGATTGTTGATTA+TGG + Chr7:13245592-13245611 MsG0780036756.01.T02:intron 25.0%
!! TTGTTAAAACTGGTGTATTT+TGG + Chr7:13246147-13246166 MsG0780036756.01.T02:intron 25.0%
!!! GAGATAACTTTTTTCGAAAA+CGG + Chr7:13247007-13247026 MsG0780036756.01.T02:CDS 25.0%
!!! TAGATTGTTGATTATGGTTT+TGG + Chr7:13245598-13245617 MsG0780036756.01.T02:intron 25.0%
!!! TTGGAATTGGAATTAGTTTT+AGG - Chr7:13245300-13245319 None:intergenic 25.0%
AAACTTATCATCAAAACCTG+CGG + Chr7:13247190-13247209 MsG0780036756.01.T02:CDS 30.0%
AAATCTCTGAATGAACTTGT+TGG + Chr7:13247760-13247779 MsG0780036756.01.T02:CDS 30.0%
AACAATATGTGAAAACACGA+TGG - Chr7:13245800-13245819 None:intergenic 30.0%
AATGAACTAATGGAGTCAAA+AGG + Chr7:13246541-13246560 MsG0780036756.01.T02:five_prime_UTR 30.0%
ACAGAGAATGAAGAAAATTG+AGG - Chr7:13245361-13245380 None:intergenic 30.0%
ATAGATGAATAAGCTTGACT+CGG - Chr7:13247164-13247183 None:intergenic 30.0%
ATTAGATAGTGAGTCAACAA+TGG - Chr7:13247116-13247135 None:intergenic 30.0%
CAGTAATTGGAAAGAAATCA+AGG - Chr7:13245863-13245882 None:intergenic 30.0%
CTCACTATCTAATGATTATG+TGG + Chr7:13247123-13247142 MsG0780036756.01.T02:CDS 30.0%
CTTGATTTCTTTCCAATTAC+TGG + Chr7:13245861-13245880 MsG0780036756.01.T02:intron 30.0%
GAATGAAGAAAATTGAGGAA+CGG - Chr7:13245356-13245375 None:intergenic 30.0%
TACAAATTCAACTTGTAGCA+TGG - Chr7:13246265-13246284 None:intergenic 30.0%
TCTTAACATTGCTGTGAAAT+CGG + Chr7:13247264-13247283 MsG0780036756.01.T02:CDS 30.0%
TGAAAACACGATGGAAAAAT+TGG - Chr7:13245791-13245810 None:intergenic 30.0%
TGAAATCATCGCAAAAATTG+AGG - Chr7:13245437-13245456 None:intergenic 30.0%
TGTGATTAAAAGAAACACTG+AGG - Chr7:13246057-13246076 None:intergenic 30.0%
TTGCAATGAAGTCATATTTC+TGG - Chr7:13246462-13246481 None:intergenic 30.0%
! AAATTTCCTTTGGAGGTTAA+AGG + Chr7:13247859-13247878 MsG0780036756.01.T02:CDS 30.0%
!! GACTGGTTTAGATAAAGAAA+AGG + Chr7:13247513-13247532 MsG0780036756.01.T02:CDS 30.0%
!!! AAACCATCCTGAGATTTTTT+GGG + Chr7:13246813-13246832 MsG0780036756.01.T02:five_prime_UTR 30.0%
!!! TGGTTTTGGATGATGAAATA+TGG + Chr7:13245612-13245631 MsG0780036756.01.T02:intron 30.0%
AAAAATCTCAGGATGGTTTG+CGG - Chr7:13246812-13246831 None:intergenic 35.0%
AACGCTATGCAATCAAATCT+GGG - Chr7:13246366-13246385 None:intergenic 35.0%
AACTTATCATCAAAACCTGC+GGG + Chr7:13247191-13247210 MsG0780036756.01.T02:CDS 35.0%
AAGGTGTGTGAATGAACTAA+TGG + Chr7:13246531-13246550 MsG0780036756.01.T02:five_prime_UTR 35.0%
ACTTGACAAATTTCCTTTGG+AGG + Chr7:13247852-13247871 MsG0780036756.01.T02:CDS 35.0%
ATAACTGAATCCATCTTCAG+GGG - Chr7:13247704-13247723 None:intergenic 35.0%
ATCACAACCCAAAAAATCTC+AGG - Chr7:13246823-13246842 None:intergenic 35.0%
CACGATGGAAAAATTGGAAT+TGG - Chr7:13245785-13245804 None:intergenic 35.0%
CATAACTGAATCCATCTTCA+GGG - Chr7:13247705-13247724 None:intergenic 35.0%
GCATTGCACATTGATACAAA+TGG + Chr7:13247823-13247842 MsG0780036756.01.T02:CDS 35.0%
GGAAAGAAATCAAGGTTTCT+GGG - Chr7:13245855-13245874 None:intergenic 35.0%
GTTTCAGAATCTCGTCAATT+TGG - Chr7:13247081-13247100 None:intergenic 35.0%
GTTTGTAGAATTAAGGAGAG+AGG - Chr7:13246908-13246927 None:intergenic 35.0%
TACTCAATGAACGGAATTGA+AGG + Chr7:13247652-13247671 MsG0780036756.01.T02:CDS 35.0%
TCATCGCAAAAATTGAGGAA+CGG - Chr7:13245432-13245451 None:intergenic 35.0%
TGGAAAGAAATCAAGGTTTC+TGG - Chr7:13245856-13245875 None:intergenic 35.0%
TGGGTTGTGATATAGTTCTT+AGG + Chr7:13246832-13246851 MsG0780036756.01.T02:five_prime_UTR 35.0%
TTGTATCCTTTAACCTCCAA+AGG - Chr7:13247868-13247887 None:intergenic 35.0%
! AAGTCGCATATGTCAGATTT+TGG - Chr7:13247613-13247632 None:intergenic 35.0%
! AATTTTTCTACTCCACCGTT+GGG - Chr7:13246646-13246665 None:intergenic 35.0%
! GGTTTGATGACTAAGAATTC+TGG + Chr7:13247571-13247590 MsG0780036756.01.T02:CDS 35.0%
!! TCTGAATGAACTTGTTGGAA+GGG + Chr7:13247765-13247784 MsG0780036756.01.T02:CDS 35.0%
!! TGACTAAGAATTCTGGAATC+AGG + Chr7:13247578-13247597 MsG0780036756.01.T02:CDS 35.0%
!!! CAAACCATCCTGAGATTTTT+TGG + Chr7:13246812-13246831 MsG0780036756.01.T02:five_prime_UTR 35.0%
!!! GTTTTGAAGGCTATGAAAAG+AGG + Chr7:13246981-13247000 MsG0780036756.01.T02:CDS 35.0%
!!! TATTTTGGCAAACTAGGTTC+TGG + Chr7:13247376-13247395 MsG0780036756.01.T02:CDS 35.0%
AACCACAAAACTAGCACTCA+GGG - Chr7:13246202-13246221 None:intergenic 40.0%
AACCAGTCATGCACATTTCA+AGG - Chr7:13247501-13247520 None:intergenic 40.0%
AAGGAGAGAGGACAAGAAAA+AGG - Chr7:13246896-13246915 None:intergenic 40.0%
AATCTCGTCAATTTGGTCTC+TGG - Chr7:13247074-13247093 None:intergenic 40.0%
AATGCAACAGAAAACTCAGC+TGG - Chr7:13247808-13247827 None:intergenic 40.0%
ACCATGACAAACTCAGCTAT+CGG + Chr7:13246959-13246978 MsG0780036756.01.T02:CDS 40.0%
ACTTCGAATTTGAACCTTGC+GGG + Chr7:13247629-13247648 MsG0780036756.01.T02:CDS 40.0%
CAACCCAAAAAATCTCAGGA+TGG - Chr7:13246819-13246838 None:intergenic 40.0%
CAACGCTATGCAATCAAATC+TGG - Chr7:13246367-13246386 None:intergenic 40.0%
CACAGCAATGTTAAGACCAT+CGG - Chr7:13247260-13247279 None:intergenic 40.0%
CATCGTTTCGAACAAAGGTA+CGG - Chr7:13247942-13247961 None:intergenic 40.0%
CGACTTACGTTTGAGTAATC+AGG - Chr7:13246676-13246695 None:intergenic 40.0%
GAACTAATGGAGTCAAAAGG+TGG + Chr7:13246544-13246563 MsG0780036756.01.T02:five_prime_UTR 40.0%
GACTTCGAATTTGAACCTTG+CGG + Chr7:13247628-13247647 MsG0780036756.01.T02:CDS 40.0%
GAGGTTAAAGGATACAACTG+TGG + Chr7:13247871-13247890 MsG0780036756.01.T02:CDS 40.0%
GCATAACTGAATCCATCTTC+AGG - Chr7:13247706-13247725 None:intergenic 40.0%
GCTTCTTTCTCTTGACAGAA+AGG + Chr7:13246512-13246531 MsG0780036756.01.T02:intron 40.0%
TCTTCAATGATGTAACCGAG+AGG - Chr7:13246616-13246635 None:intergenic 40.0%
! AAAATCTCAGGATGGTTTGC+GGG - Chr7:13246811-13246830 None:intergenic 40.0%
! AATGAAGTGCTTGGAGAAGA+CGG + Chr7:13247904-13247923 MsG0780036756.01.T02:CDS 40.0%
! CGCATATGTCAGATTTTGGA+AGG - Chr7:13247609-13247628 None:intergenic 40.0%
! GAATTTTTCTACTCCACCGT+TGG - Chr7:13246647-13246666 None:intergenic 40.0%
! GCTGTTCTTGACAGCTATTT+TGG + Chr7:13247361-13247380 MsG0780036756.01.T02:CDS 40.0%
!! CTCTGAATGAACTTGTTGGA+AGG + Chr7:13247764-13247783 MsG0780036756.01.T02:CDS 40.0%
!! TATGCAAGCTTTGAAGCAGT+GGG + Chr7:13247721-13247740 MsG0780036756.01.T02:CDS 40.0%
!! TTATGCAAGCTTTGAAGCAG+TGG + Chr7:13247720-13247739 MsG0780036756.01.T02:CDS 40.0%
!! TTTTTGTACGAAGCACCTCT+CGG + Chr7:13246598-13246617 MsG0780036756.01.T02:five_prime_UTR 40.0%
!!! AACTCAGCTATCGGTTTTGA+AGG + Chr7:13246968-13246987 MsG0780036756.01.T02:CDS 40.0%
!!! GACAGCTATTTTGGCAAACT+AGG + Chr7:13247370-13247389 MsG0780036756.01.T02:CDS 40.0%
AAATCGGTGAGATACACTCG+CGG + Chr7:13247280-13247299 MsG0780036756.01.T02:CDS 45.0%
AAGACAGATGCATCTTCAGC+AGG + Chr7:13247550-13247569 MsG0780036756.01.T02:CDS 45.0%
AAGGATACAACTGTGGAGAG+AGG + Chr7:13247878-13247897 MsG0780036756.01.T02:CDS 45.0%
ACCGATAGCTGAGTTTGTCA+TGG - Chr7:13246963-13246982 None:intergenic 45.0%
AGGACAAGAAAAAGGAGAGG+AGG - Chr7:13246888-13246907 None:intergenic 45.0%
AGGTGCTTCGTACAAAAAGG+AGG - Chr7:13246596-13246615 None:intergenic 45.0%
ATTGAAGACGTTCGACCCAA+CGG + Chr7:13246628-13246647 MsG0780036756.01.T02:five_prime_UTR 45.0%
CAACTTCCTCGGAAAAGCTA+CGG - Chr7:13247342-13247361 None:intergenic 45.0%
CAGCATTTCAGAGTAGACCT+TGG - Chr7:13247976-13247995 None:intergenic 45.0%
CATCACCCATCATGTAAGCT+TGG - Chr7:13247405-13247424 None:intergenic 45.0%
CGTACCTTTGTTCGAAACGA+TGG + Chr7:13247940-13247959 MsG0780036756.01.T02:CDS 45.0%
GAACCACAAAACTAGCACTC+AGG - Chr7:13246203-13246222 None:intergenic 45.0%
GAGAGGACAAGAAAAAGGAG+AGG - Chr7:13246891-13246910 None:intergenic 45.0%
GGTAGCCAAGCTTACATGAT+GGG + Chr7:13247397-13247416 MsG0780036756.01.T02:CDS 45.0%
GTCAAGAACAGCAACTTCCT+CGG - Chr7:13247353-13247372 None:intergenic 45.0%
GTCATGGTCATCTTGACTCA+GGG - Chr7:13246947-13246966 None:intergenic 45.0%
TCAACAATGGTGCATTCTGC+TGG - Chr7:13247103-13247122 None:intergenic 45.0%
TCATGGTCATCTTGACTCAG+GGG - Chr7:13246946-13246965 None:intergenic 45.0%
TGAGAACGAGGAGGAAGTTA+AGG + Chr7:13248008-13248027 MsG0780036756.01.T02:CDS 45.0%
TGCTAAGCTAGAAGCTTCAC+CGG + Chr7:13247462-13247481 MsG0780036756.01.T02:CDS 45.0%
TGGTAGCCAAGCTTACATGA+TGG + Chr7:13247396-13247415 MsG0780036756.01.T02:CDS 45.0%
TGTCATGGTCATCTTGACTC+AGG - Chr7:13246948-13246967 None:intergenic 45.0%
TTCTCTGATCCTGCTGGATT+AGG + Chr7:13247034-13247053 MsG0780036756.01.T02:CDS 45.0%
TTTGGTCTCTGGACAATGCT+CGG - Chr7:13247063-13247082 None:intergenic 45.0%
! GAGAGGATCAATGAAGTGCT+TGG + Chr7:13247895-13247914 MsG0780036756.01.T02:CDS 45.0%
!! CGCGGAAGTTTCATTTTTCC+TGG + Chr7:13247298-13247317 MsG0780036756.01.T02:CDS 45.0%
!! GAGAGGTGCTTCGTACAAAA+AGG - Chr7:13246599-13246618 None:intergenic 45.0%
!! TGAAGCTTCTAGCTTAGCAC+TGG - Chr7:13247461-13247480 None:intergenic 45.0%
AACTAGCACTCAGGGTGGTA+TGG - Chr7:13246194-13246213 None:intergenic 50.0%
AAGCAATTTCGTAGTCCCGC+AGG - Chr7:13247209-13247228 None:intergenic 50.0%
ATCCATCTTCAGGGGTGACA+TGG - Chr7:13247696-13247715 None:intergenic 50.0%
ATCCATGTCACCCCTGAAGA+TGG + Chr7:13247691-13247710 MsG0780036756.01.T02:CDS 50.0%
CACAAAACTAGCACTCAGGG+TGG - Chr7:13246199-13246218 None:intergenic 50.0%
CCTTGCGGGTACTCAATGAA+CGG + Chr7:13247643-13247662 MsG0780036756.01.T02:CDS 50.0%
CGGCAAGCTTGAGAATTGCA+GGG - Chr7:13247240-13247259 None:intergenic 50.0%
GCAATTCTCAAGCTTGCCGA+TGG + Chr7:13247241-13247260 MsG0780036756.01.T02:CDS 50.0%
GCAGCCATCGTTTCGAACAA+AGG - Chr7:13247947-13247966 None:intergenic 50.0%
GGCCTTGAAATGTGCATGAC+TGG + Chr7:13247496-13247515 MsG0780036756.01.T02:CDS 50.0%
TCAAGGCCATAGACAGCTTC+CGG - Chr7:13247484-13247503 None:intergenic 50.0%
TCGGCAAGCTTGAGAATTGC+AGG - Chr7:13247241-13247260 None:intergenic 50.0%
TTCAGGGGTGACATGGATAG+TGG - Chr7:13247689-13247708 None:intergenic 50.0%
! GGTGTTTTCTCTGATCCTGC+TGG + Chr7:13247028-13247047 MsG0780036756.01.T02:CDS 50.0%
! TCTGAAATGCTGCTGGAGTG+AGG + Chr7:13247984-13248003 MsG0780036756.01.T02:CDS 50.0%
!! GGTCTACTCTGAAATGCTGC+TGG + Chr7:13247977-13247996 MsG0780036756.01.T02:CDS 50.0%
!!! CACCCTGAGTGCTAGTTTTG+TGG + Chr7:13246197-13246216 MsG0780036756.01.T02:intron 50.0%
ACGATGGCTGCTCATCTCCA+AGG + Chr7:13247956-13247975 MsG0780036756.01.T02:CDS 55.0%
CCGTTCATTGAGTACCCGCA+AGG - Chr7:13247646-13247665 None:intergenic 55.0%
CCTCGGAAAAGCTACGGTGA+GGG - Chr7:13247336-13247355 None:intergenic 55.0%
CTGGAGTGAGGATGAGAACG+AGG + Chr7:13247996-13248015 MsG0780036756.01.T02:CDS 55.0%
GAGTGAGGATGAGAACGAGG+AGG + Chr7:13247999-13248018 MsG0780036756.01.T02:CDS 55.0%
GCTTCACCGGAAGCTGTCTA+TGG + Chr7:13247475-13247494 MsG0780036756.01.T02:CDS 55.0%
TCCTCGGAAAAGCTACGGTG+AGG - Chr7:13247337-13247356 None:intergenic 55.0%
TGAGGGAACGATTGAGCTCC+AGG - Chr7:13247319-13247338 None:intergenic 55.0%
GAAGACGTTCGACCCAACGG+TGG + Chr7:13246631-13246650 MsG0780036756.01.T02:five_prime_UTR 60.0%
GGTCTCTGGACAATGCTCGG+AGG - Chr7:13247060-13247079 None:intergenic 60.0%
! CCCTCACCGTAGCTTTTCCG+AGG + Chr7:13247333-13247352 MsG0780036756.01.T02:CDS 60.0%
GCTCGGAGGCCTAATCCAGC+AGG - Chr7:13247046-13247065 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 13245295 13248152 13245295 ID=MsG0780036756.01;Name=MsG0780036756.01
Chr7 mRNA 13245295 13248152 13245295 ID=MsG0780036756.01.T01;Parent=MsG0780036756.01;Name=MsG0780036756.01.T01;_AED=0.47;_eAED=0.47;_QI=450|1|1|1|0|0|5|114|360
Chr7 exon 13245490 13245515 13245490 ID=MsG0780036756.01.T01:exon:2706;Parent=MsG0780036756.01.T01
Chr7 exon 13245537 13245566 13245537 ID=MsG0780036756.01.T01:exon:2707;Parent=MsG0780036756.01.T01
Chr7 five_prime_UTR 13245295 13245378 13245295 ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7 five_prime_UTR 13245490 13245515 13245490 ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7 five_prime_UTR 13245537 13245566 13245537 ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7 five_prime_UTR 13246530 13246687 13246530 ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7 five_prime_UTR 13246804 13246955 13246804 ID=MsG0780036756.01.T01:five_prime_utr;Parent=MsG0780036756.01.T01
Chr7 CDS 13246956 13248038 13246956 ID=MsG0780036756.01.T01:cds;Parent=MsG0780036756.01.T01
Chr7 three_prime_UTR 13248039 13248152 13248039 ID=MsG0780036756.01.T01:three_prime_utr;Parent=MsG0780036756.01.T01
Chr7 mRNA 13245295 13248152 13245295 ID=MsG0780036756.01.T02;Parent=MsG0780036756.01;Name=MsG0780036756.01.T02;_AED=0.47;_eAED=0.47;_QI=471|1|1|1|0|0|4|114|360
Chr7 exon 13245490 13245566 13245490 ID=MsG0780036756.01.T02:exon:2710;Parent=MsG0780036756.01.T02
Chr7 five_prime_UTR 13245295 13245378 13245295 ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7 five_prime_UTR 13245490 13245566 13245490 ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7 five_prime_UTR 13246530 13246687 13246530 ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7 five_prime_UTR 13246804 13246955 13246804 ID=MsG0780036756.01.T02:five_prime_utr;Parent=MsG0780036756.01.T02
Chr7 CDS 13246956 13248038 13246956 ID=MsG0780036756.01.T02:cds;Parent=MsG0780036756.01.T02
Chr7 three_prime_UTR 13248039 13248152 13248039 ID=MsG0780036756.01.T02:three_prime_utr;Parent=MsG0780036756.01.T02
Gene Sequence

>MsG0780036756.01.T02

ATGACCATGACAAACTCAGCTATCGGTTTTGAAGGCTATGAAAAGAGGCTTGAGATAACTTTTTTCGAAAACGGTGTTTTCTCTGATCCTGCTGGATTAGGCCTCCGAGCATTGTCCAGAGACCAAATTGACGAGATTCTGAAACCAGCAGAATGCACCATTGTTGACTCACTATCTAATGATTATGTGGATTCATATGTTCTTTCCGAGTCAAGCTTATTCATCTATGCGTACAAACTTATCATCAAAACCTGCGGGACTACGAAATTGCTTCTGTCTATCCCTGCAATTCTCAAGCTTGCCGATGGTCTTAACATTGCTGTGAAATCGGTGAGATACACTCGCGGAAGTTTCATTTTTCCTGGAGCTCAATCGTTCCCTCACCGTAGCTTTTCCGAGGAAGTTGCTGTTCTTGACAGCTATTTTGGCAAACTAGGTTCTGGTAGCCAAGCTTACATGATGGGTGATGATGATAAGTCACAAATTTGGCACATTTATTCTGCCAGTGCTAAGCTAGAAGCTTCACCGGAAGCTGTCTATGGCCTTGAAATGTGCATGACTGGTTTAGATAAAGAAAAGGCATTAGTGTTTTTCAAGACAGATGCATCTTCAGCAGGTTTGATGACTAAGAATTCTGGAATCAGGAAGATCCTTCCAAAATCTGACATATGCGACTTCGAATTTGAACCTTGCGGGTACTCAATGAACGGAATTGAAGGAAGTGCAATATCCACTATCCATGTCACCCCTGAAGATGGATTCAGTTATGCAAGCTTTGAAGCAGTGGGTTATGACTACGAAGAGAAATCTCTGAATGAACTTGTTGGAAGGGTTTTAGCATGTTTCTATCCAGCTGAGTTTTCTGTTGCATTGCACATTGATACAAATGGTGAAAAACTTGACAAATTTCCTTTGGAGGTTAAAGGATACAACTGTGGAGAGAGGATCAATGAAGTGCTTGGAGAAGACGGTGCAGTCGTTTACCGTACCTTTGTTCGAAACGATGGCTGCTCATCTCCAAGGTCTACTCTGAAATGCTGCTGGAGTGAGGATGAGAACGAGGAGGAAGTTAAGGAGATATAA

>MsG0780036756.01.T01

ATGACCATGACAAACTCAGCTATCGGTTTTGAAGGCTATGAAAAGAGGCTTGAGATAACTTTTTTCGAAAACGGTGTTTTCTCTGATCCTGCTGGATTAGGCCTCCGAGCATTGTCCAGAGACCAAATTGACGAGATTCTGAAACCAGCAGAATGCACCATTGTTGACTCACTATCTAATGATTATGTGGATTCATATGTTCTTTCCGAGTCAAGCTTATTCATCTATGCGTACAAACTTATCATCAAAACCTGCGGGACTACGAAATTGCTTCTGTCTATCCCTGCAATTCTCAAGCTTGCCGATGGTCTTAACATTGCTGTGAAATCGGTGAGATACACTCGCGGAAGTTTCATTTTTCCTGGAGCTCAATCGTTCCCTCACCGTAGCTTTTCCGAGGAAGTTGCTGTTCTTGACAGCTATTTTGGCAAACTAGGTTCTGGTAGCCAAGCTTACATGATGGGTGATGATGATAAGTCACAAATTTGGCACATTTATTCTGCCAGTGCTAAGCTAGAAGCTTCACCGGAAGCTGTCTATGGCCTTGAAATGTGCATGACTGGTTTAGATAAAGAAAAGGCATTAGTGTTTTTCAAGACAGATGCATCTTCAGCAGGTTTGATGACTAAGAATTCTGGAATCAGGAAGATCCTTCCAAAATCTGACATATGCGACTTCGAATTTGAACCTTGCGGGTACTCAATGAACGGAATTGAAGGAAGTGCAATATCCACTATCCATGTCACCCCTGAAGATGGATTCAGTTATGCAAGCTTTGAAGCAGTGGGTTATGACTACGAAGAGAAATCTCTGAATGAACTTGTTGGAAGGGTTTTAGCATGTTTCTATCCAGCTGAGTTTTCTGTTGCATTGCACATTGATACAAATGGTGAAAAACTTGACAAATTTCCTTTGGAGGTTAAAGGATACAACTGTGGAGAGAGGATCAATGAAGTGCTTGGAGAAGACGGTGCAGTCGTTTACCGTACCTTTGTTCGAAACGATGGCTGCTCATCTCCAAGGTCTACTCTGAAATGCTGCTGGAGTGAGGATGAGAACGAGGAGGAAGTTAAGGAGATATAA
Protein sequence

>MsG0780036756.01.T02

MTMTNSAIGFEGYEKRLEITFFENGVFSDPAGLGLRALSRDQIDEILKPAECTIVDSLSNDYVDSYVLSESSLFIYAYKLIIKTCGTTKLLLSIPAILKLADGLNIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDSYFGKLGSGSQAYMMGDDDKSQIWHIYSASAKLEASPEAVYGLEMCMTGLDKEKALVFFKTDASSAGLMTKNSGIRKILPKSDICDFEFEPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYDYEEKSLNELVGRVLACFYPAEFSVALHIDTNGEKLDKFPLEVKGYNCGERINEVLGEDGAVVYRTFVRNDGCSSPRSTLKCCWSEDENEEEVKEI*

>MsG0780036756.01.T01

MTMTNSAIGFEGYEKRLEITFFENGVFSDPAGLGLRALSRDQIDEILKPAECTIVDSLSNDYVDSYVLSESSLFIYAYKLIIKTCGTTKLLLSIPAILKLADGLNIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDSYFGKLGSGSQAYMMGDDDKSQIWHIYSASAKLEASPEAVYGLEMCMTGLDKEKALVFFKTDASSAGLMTKNSGIRKILPKSDICDFEFEPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYDYEEKSLNELVGRVLACFYPAEFSVALHIDTNGEKLDKFPLEVKGYNCGERINEVLGEDGAVVYRTFVRNDGCSSPRSTLKCCWSEDENEEEVKEI*