AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016609.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016609.01.T01 MTR_3g092640 97.406 424 11 0 1 424 1 424 0.0 860
MsG0380016609.01.T01 MTR_1g078030 53.735 415 157 5 10 424 15 394 1.41e-160 458
MsG0380016609.01.T01 MTR_5g007030 43.415 410 218 6 17 417 30 434 7.81e-113 338
MsG0380016609.01.T01 MTR_5g007030 50.470 319 154 2 101 417 8 324 7.11e-108 321
MsG0380016609.01.T01 MTR_4g005140 31.208 298 175 9 115 396 68 351 2.04e-36 137
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016609.01.T01 AT1G64720 58.473 419 122 8 8 424 16 384 4.87e-170 482
MsG0380016609.01.T01 AT5G54170 53.237 417 170 8 20 416 16 427 6.21e-145 420
MsG0380016609.01.T01 AT4G14500 46.552 406 208 3 17 417 30 431 5.04e-126 372
MsG0380016609.01.T01 AT3G23080 45.679 405 203 5 17 417 26 417 1.22e-117 350
MsG0380016609.01.T01 AT3G23080 46.115 399 198 5 23 417 1 386 4.36e-117 347
MsG0380016609.01.T01 AT3G23080 46.115 399 198 5 23 417 1 386 4.36e-117 347
MsG0380016609.01.T01 AT4G14500 43.750 240 128 3 17 249 30 269 8.50e-60 197
MsG0380016609.01.T01 AT3G13062 32.653 294 181 8 119 402 84 370 2.42e-40 149
MsG0380016609.01.T01 AT3G13062 32.653 294 181 8 119 402 84 370 2.89e-40 149
MsG0380016609.01.T01 AT3G13062 31.788 302 181 9 119 402 84 378 1.21e-37 141
MsG0380016609.01.T01 AT1G55960 32.432 296 178 8 116 396 80 368 1.42e-37 141
MsG0380016609.01.T01 AT1G55960 29.693 293 159 9 119 396 83 343 3.60e-26 109

Find 169 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTTGGATTTGCTAATT+TGG 0.096001 3:-85672935 MsG0380016609.01.T01:CDS
CCTTGTGGAACTATCAAATT+TGG 0.183642 3:+85674854 None:intergenic
CAATGGAAAACCCTGCAATT+TGG 0.229635 3:-85675154 MsG0380016609.01.T01:CDS
ATCAATCTCTTGAAGGGATT+TGG 0.233935 3:-85672885 MsG0380016609.01.T01:three_prime_UTR
AAATAGTACTGCTTCGATAT+TGG 0.237005 3:+85674182 None:intergenic
CAATAAAGAGATCAATAAAA+AGG 0.238323 3:-85674898 MsG0380016609.01.T01:CDS
TCTTATCCATTGCACTTTCA+TGG 0.240540 3:+85674042 None:intergenic
ACATTATCGGGCGAAGAATA+TGG 0.249260 3:-85673876 MsG0380016609.01.T01:CDS
TTTGGTGTTGCTAAAAGATT+TGG 0.250029 3:-85672949 MsG0380016609.01.T01:CDS
AATGGAAAACCCTGCAATTT+GGG 0.252814 3:-85675153 MsG0380016609.01.T01:CDS
AAAGTCTCGGCTTGTTGATT+TGG 0.257188 3:-85672520 MsG0380016609.01.T01:three_prime_UTR
AGATGGTGAGGGATTTGTTC+TGG 0.264325 3:-85674141 MsG0380016609.01.T01:CDS
TAAACCAAAACCACTCTAAT+TGG 0.265319 3:-85675537 MsG0380016609.01.T01:five_prime_UTR
AGTTTATTTCACCCTCTTAA+AGG 0.266705 3:-85675199 MsG0380016609.01.T01:five_prime_UTR
ATGATCAATTCCGACCTAAA+TGG 0.274607 3:-85674117 MsG0380016609.01.T01:CDS
TGAACCAATTAGAGTGGTTT+TGG 0.278685 3:+85675533 None:intergenic
AGATTTGGATTTGCTAATTT+GGG 0.278788 3:-85672934 MsG0380016609.01.T01:CDS
ACTCTCTCGTTCCGCTTTCA+TGG 0.280943 3:-85673169 MsG0380016609.01.T01:CDS
GAGTTATTGTTGGTTGGTTA+TGG 0.284197 3:-85675079 MsG0380016609.01.T01:CDS
AATAGTACTGCTTCGATATT+GGG 0.295359 3:+85674183 None:intergenic
GTGACCAAGGCTGTTATATT+TGG 0.297239 3:-85672967 MsG0380016609.01.T01:CDS
ATTTGAGGAGAAGAATAATT+AGG 0.297481 3:+85675328 None:intergenic
CCCTCTCGAAGCCATTGTTT+TGG 0.297942 3:-85672650 MsG0380016609.01.T01:three_prime_UTR
CTTTCTCATTCCCCTAGATT+TGG 0.311325 3:+85672539 None:intergenic
ACCGAAATGGATTGTTTCAT+TGG 0.320605 3:-85675054 MsG0380016609.01.T01:CDS
TTATTGATGCACAAAGAATC+AGG 0.325112 3:+85674915 None:intergenic
TATCAAGAAGCAAAAGCTTC+TGG 0.334002 3:-85673198 MsG0380016609.01.T01:CDS
AATATAGGAGAATCTGAAAT+TGG 0.334138 3:+85675008 None:intergenic
GCTCTTCCATCATGAAGAAA+TGG 0.335228 3:-85673304 MsG0380016609.01.T01:CDS
ACAAGCATATCATCCCATTT+AGG 0.342967 3:+85674103 None:intergenic
CAACCAATGTAATGCGCATT+TGG 0.348140 3:+85672835 None:intergenic
GCCAATGAAACAATCCATTT+CGG 0.348500 3:+85675053 None:intergenic
GCATTAAAACCCCAAATTGC+AGG 0.348790 3:+85675143 None:intergenic
AAGTCTCGGCTTGTTGATTT+GGG 0.349338 3:-85672519 MsG0380016609.01.T01:three_prime_UTR
CTTGGGAAATTGCAAAGCTT+GGG 0.351239 3:-85673275 MsG0380016609.01.T01:CDS
CTTGCTTGTAGTCTAGATAA+AGG 0.357837 3:-85672994 MsG0380016609.01.T01:CDS
TATGAAGAAGAAATGTGAAT+AGG 0.357876 3:+85675502 None:intergenic
TTCTTGATAAGCGCGTAAAC+CGG 0.360902 3:+85673212 None:intergenic
TTCTCTGTCTTTACAGAAGA+AGG 0.369154 3:+85673900 None:intergenic
CCTTGGGAAATTGCAAAGCT+TGG 0.380072 3:-85673276 MsG0380016609.01.T01:CDS
ATGCACAAAGAATCAGGGTT+TGG 0.389553 3:+85674921 None:intergenic
TTCGGTACGGTCATGCCCTT+TGG 0.391532 3:+85673045 None:intergenic
ATGAAGAAGAAATGTGAATA+GGG 0.392048 3:+85675503 None:intergenic
GTTTATTTCACCCTCTTAAA+GGG 0.396971 3:-85675198 MsG0380016609.01.T01:five_prime_UTR
GTCAGAAGTAATCGCACTTC+CGG 0.403328 3:+85673074 None:intergenic
TTTGTGTTGGAGAATTTGTT+AGG 0.407127 3:+85675574 None:intergenic
GTTGGTTATGGAAACCGAAA+TGG 0.409722 3:-85675067 MsG0380016609.01.T01:CDS
GTTGAATCAAAGAGAGATAA+TGG 0.410181 3:-85673351 MsG0380016609.01.T01:CDS
AAGGAGCTGTGGAATATTTG+AGG 0.414935 3:+85675313 None:intergenic
AATTTCAATGGCGAAAATAT+AGG 0.421810 3:+85674993 None:intergenic
AAGTTTCAAAACCCTTTAAG+AGG 0.424066 3:+85675187 None:intergenic
CGCATTACATTGGTTGATGT+TGG 0.425042 3:-85672828 MsG0380016609.01.T01:three_prime_UTR
CTCTTCCATCATGAAGAAAT+GGG 0.425947 3:-85673303 MsG0380016609.01.T01:CDS
TCTCGTTCCGCTTTCATGGC+CGG 0.427496 3:-85673165 MsG0380016609.01.T01:CDS
ATGAAGAAATGGGAATTCCT+TGG 0.434331 3:-85673293 MsG0380016609.01.T01:CDS
AGAAAGAAGATAAGAAGAAG+AGG 0.435078 3:+85675449 None:intergenic
AACAAATCCCTCACCATCTC+AGG 0.435785 3:+85674145 None:intergenic
CATTATCGGGCGAAGAATAT+GGG 0.439592 3:-85673875 MsG0380016609.01.T01:CDS
AAAGACAGAGAATACATTAT+CGG 0.440471 3:-85673889 MsG0380016609.01.T01:CDS
TGATCAATTCCGACCTAAAT+GGG 0.441777 3:-85674116 MsG0380016609.01.T01:CDS
TCTTAGGAGTTATTGTTGGT+TGG 0.448664 3:-85675085 MsG0380016609.01.T01:CDS
TCCGGTGAAGATACTTCTAA+TGG 0.456041 3:-85674437 MsG0380016609.01.T01:CDS
AGAAAGATGGAGGTCTTCCT+TGG 0.462865 3:-85674370 MsG0380016609.01.T01:CDS
AAACATTCACATGGTAAAGT+TGG 0.463882 3:-85672345 MsG0380016609.01.T01:three_prime_UTR
GATGGTGAGGGATTTGTTCT+GGG 0.463908 3:-85674140 MsG0380016609.01.T01:CDS
TGAAGAAATGGGAATTCCTT+GGG 0.464197 3:-85673292 MsG0380016609.01.T01:CDS
GTTAGGTGTTGTGTTTGTGT+TGG 0.472614 3:+85675561 None:intergenic
TTGGTTCTCTACGCCATGCC+TGG 0.479368 3:+85674309 None:intergenic
CCACCAATGACTAGCATCTT+CGG 0.484556 3:+85673027 None:intergenic
GCAAAGCTTGGGGTGCGAAA+AGG 0.484622 3:-85673264 MsG0380016609.01.T01:CDS
GTTGATGTTGGATCAAGATC+GGG 0.486228 3:-85672816 MsG0380016609.01.T01:three_prime_UTR
CTATGCAGTTCTCAGAAATC+CGG 0.487042 3:-85674455 MsG0380016609.01.T01:intron
GAATTCCCATTTCTTCATGA+TGG 0.489686 3:+85673298 None:intergenic
AGATTCCCCAAATAACTCAT+TGG 0.490673 3:-85675630 None:intergenic
GGTTGATGTTGGATCAAGAT+CGG 0.498351 3:-85672817 MsG0380016609.01.T01:three_prime_UTR
GGCGAAGAATATGGGAATGC+GGG 0.499090 3:-85673867 MsG0380016609.01.T01:CDS
CATCCAAATGCGCATTACAT+TGG 0.501466 3:-85672838 MsG0380016609.01.T01:three_prime_UTR
GATGATGAATCATTACAAAC+CGG 0.502385 3:-85673093 MsG0380016609.01.T01:CDS
AAAGAAGAATAGAATTTCAA+TGG 0.502415 3:+85674981 None:intergenic
AGGTGGAATCAATCTCTTGA+AGG 0.504620 3:-85672892 MsG0380016609.01.T01:three_prime_UTR
AAGGGGTATGTGGTTGAAGA+AGG 0.505565 3:+85675294 None:intergenic
GAGTTTGAAATTTAGACCAT+TGG 0.506045 3:-85672744 MsG0380016609.01.T01:three_prime_UTR
AAGACAGAGAATACATTATC+GGG 0.507509 3:-85673888 MsG0380016609.01.T01:CDS
TCTAGTTGGTGCATTCGAGC+AGG 0.509639 3:-85673642 MsG0380016609.01.T01:intron
AAGAGGGTGAAATAAACTAA+AGG 0.510097 3:+85675204 None:intergenic
AGAGGGTGAAATAAACTAAA+GGG 0.510899 3:+85675205 None:intergenic
AATGCGTTCTGAGGAAACTA+AGG 0.512423 3:+85675259 None:intergenic
GAAGAAATGTGAATAGGGAT+AGG 0.514206 3:+85675508 None:intergenic
TCTCTGTCTTTACAGAAGAA+GGG 0.516792 3:+85673901 None:intergenic
GCGAAAAGGCATGTGGGGAA+TGG 0.521022 3:-85673250 MsG0380016609.01.T01:CDS
TCTTCCTTGGATACAGATGA+TGG 0.524577 3:-85674357 MsG0380016609.01.T01:CDS
CCAAGCTTTGCAATTTCCCA+AGG 0.529721 3:+85673276 None:intergenic
TCTTGATAAGCGCGTAAACC+GGG 0.530261 3:+85673213 None:intergenic
CTCTGTCTTTACAGAAGAAG+GGG 0.532991 3:+85673902 None:intergenic
GTAAAAGATAGTAGAACTAA+AGG 0.533449 3:-85672912 MsG0380016609.01.T01:exon
CATTAAAACCCCAAATTGCA+GGG 0.535660 3:+85675144 None:intergenic
TTGGGGTGCGAAAAGGCATG+TGG 0.540671 3:-85673257 MsG0380016609.01.T01:CDS
GAAAGAAGATAAGAAGAAGA+GGG 0.540918 3:+85675450 None:intergenic
TACCTTTGTGACGCAATAGT+AGG 0.544173 3:+85673840 None:intergenic
ACCATTAGAAGTATCTTCAC+CGG 0.545080 3:+85674436 None:intergenic
TGGGGTGCGAAAAGGCATGT+GGG 0.547657 3:-85673256 MsG0380016609.01.T01:CDS
AAGCTTGTTGAAGAGAAAGA+TGG 0.548875 3:-85674383 MsG0380016609.01.T01:CDS
GGTGGAATCAATCTCTTGAA+GGG 0.550268 3:-85672891 MsG0380016609.01.T01:three_prime_UTR
AAAGATAGTAGAACTAAAGG+TGG 0.551418 3:-85672909 MsG0380016609.01.T01:exon
TCCAAAACAATGGCTTCGAG+AGG 0.551638 3:+85672649 None:intergenic
ATGGTACAAAAGATTGAGCC+CGG 0.553382 3:-85673231 MsG0380016609.01.T01:CDS
AACACCAAATATAACAGCCT+TGG 0.555762 3:+85672963 None:intergenic
GAAAGTGCAATGGATAAGAA+AGG 0.560742 3:-85674038 MsG0380016609.01.T01:intron
GTACCGAAGATGCTAGTCAT+TGG 0.562943 3:-85673030 MsG0380016609.01.T01:CDS
TTGGGAAATTGCAAAGCTTG+GGG 0.564589 3:-85673274 MsG0380016609.01.T01:CDS
TTGCACTTTCATGGTTCCAG+TGG 0.567434 3:+85674051 None:intergenic
TATTGATGCACAAAGAATCA+GGG 0.567482 3:+85674916 None:intergenic
ACTTTCATGGTTCCAGTGGT+AGG 0.569928 3:+85674055 None:intergenic
TTAGAAGAGTGTCCTACCAC+TGG 0.570104 3:-85674067 MsG0380016609.01.T01:CDS
AGTTTCAAAACCCTTTAAGA+GGG 0.570957 3:+85675188 None:intergenic
CACAGAGTTTATAAATTCTG+TGG 0.571669 3:+85672432 None:intergenic
TTTATTACTTCAAAATGTGG+AGG 0.572509 3:-85672597 MsG0380016609.01.T01:three_prime_UTR
TAGATGTGTATTACTCTAGT+TGG 0.573803 3:-85673656 MsG0380016609.01.T01:CDS
GCTTGTTGATTTGGGAGAGA+GGG 0.574652 3:-85672511 MsG0380016609.01.T01:three_prime_UTR
ATGCAACTCCTGAGATGGTG+AGG 0.574823 3:-85674153 MsG0380016609.01.T01:CDS
CCGATGGATTGCAAGTACTC+AGG 0.575720 3:+85673123 None:intergenic
TTATCCATCATCTGTATCCA+AGG 0.580476 3:+85674353 None:intergenic
TAATACACATCTACACGTCT+AGG 0.582676 3:+85673666 None:intergenic
GGCTTGTTGATTTGGGAGAG+AGG 0.583955 3:-85672512 MsG0380016609.01.T01:three_prime_UTR
CTAGGGGAATGAGAAAGTCT+CGG 0.584830 3:-85672533 MsG0380016609.01.T01:three_prime_UTR
CCGAAGATGCTAGTCATTGG+TGG 0.584906 3:-85673027 MsG0380016609.01.T01:CDS
CCTGAGTACTTGCAATCCAT+CGG 0.588767 3:-85673123 MsG0380016609.01.T01:CDS
TACTTCTGACGACAAACCAA+AGG 0.589022 3:-85673061 MsG0380016609.01.T01:CDS
ATGAAAGCGGAACGAGAGAG+TGG 0.589867 3:+85673171 None:intergenic
TTTGGTGGGTGAAGAAGAAG+AGG 0.592927 3:+85674872 None:intergenic
CGACTATGAGTTACCAGGCA+TGG 0.594580 3:-85674322 MsG0380016609.01.T01:CDS
TTGTAATGATTCATCATCAG+AGG 0.595726 3:+85673098 None:intergenic
TTGTTATAGAATGCGTTCTG+AGG 0.596541 3:+85675250 None:intergenic
TGAATTCTTAGACCATGAGT+AGG 0.598691 3:-85672461 MsG0380016609.01.T01:three_prime_UTR
TGAAGATGCAACTCCTGAGA+TGG 0.599312 3:-85674158 MsG0380016609.01.T01:CDS
ATGGAAAACCCTGCAATTTG+GGG 0.599898 3:-85675152 MsG0380016609.01.T01:CDS
ACTTCTGACGACAAACCAAA+GGG 0.601183 3:-85673060 MsG0380016609.01.T01:CDS
TTCATCATCAGAGGATCCGA+TGG 0.604092 3:+85673107 None:intergenic
TACTGCTTCGATATTGGGGA+GGG 0.606720 3:+85674188 None:intergenic
ACTGTTCGATCAAGATCCAA+TGG 0.611534 3:+85672728 None:intergenic
TGTGGAACTATCAAATTTGG+TGG 0.612711 3:+85674857 None:intergenic
TTGTAGTCTAGATAAAGGAT+TGG 0.612824 3:-85672989 MsG0380016609.01.T01:CDS
AATGACTAGCATCTTCGGTA+CGG 0.620562 3:+85673032 None:intergenic
CTGGAACCATGAAAGTGCAA+TGG 0.622256 3:-85674048 MsG0380016609.01.T01:CDS
TAGGAATGAACCAATTAGAG+TGG 0.623041 3:+85675527 None:intergenic
GGGCGAAGAATATGGGAATG+CGG 0.625266 3:-85673868 MsG0380016609.01.T01:CDS
ATAGTACTGCTTCGATATTG+GGG 0.625450 3:+85674184 None:intergenic
TGTGGTTGAAGAAGGAGCTG+TGG 0.626852 3:+85675302 None:intergenic
GAAGAATATGGGAATGCGGG+AGG 0.627874 3:-85673864 MsG0380016609.01.T01:CDS
GGCATGGCGTAGAGAACCAA+AGG 0.628323 3:-85674306 MsG0380016609.01.T01:intron
GGGGTGCGAAAAGGCATGTG+GGG 0.628732 3:-85673255 MsG0380016609.01.T01:CDS
GCATATCATCCCATTTAGGT+CGG 0.629636 3:+85674107 None:intergenic
TGCAACTCCTGAGATGGTGA+GGG 0.632971 3:-85674152 MsG0380016609.01.T01:CDS
ATTGACACCGGCCATGAAAG+CGG 0.633342 3:+85673158 None:intergenic
CCAAAACAATGGCTTCGAGA+GGG 0.633529 3:+85672650 None:intergenic
ACGTGGATCATCCAAAACAA+TGG 0.639277 3:+85672639 None:intergenic
CATGCCTGGTAACTCATAGT+CGG 0.646187 3:+85674323 None:intergenic
CCAAATTTGATAGTTCCACA+AGG 0.652382 3:-85674854 MsG0380016609.01.T01:intron
GTCCTACTATTGCGTCACAA+AGG 0.655181 3:-85673842 MsG0380016609.01.T01:intron
GTACTGCTTCGATATTGGGG+AGG 0.655617 3:+85674187 None:intergenic
GGAAACTATAATGGATAACG+TGG 0.662024 3:+85672622 None:intergenic
TACTCCGACTATGAGTTACC+AGG 0.668614 3:-85674327 MsG0380016609.01.T01:CDS
CTTGTTGAAGAGAAAGATGG+AGG 0.668763 3:-85674380 MsG0380016609.01.T01:CDS
GATGTTGGATCAAGATCGGG+CGG 0.673003 3:-85672813 MsG0380016609.01.T01:three_prime_UTR
AGATAAAGGATTGGTGACCA+AGG 0.675087 3:-85672980 MsG0380016609.01.T01:CDS
CAGAATTTATAAACTCTGTG+TGG 0.677998 3:-85672429 MsG0380016609.01.T01:three_prime_UTR
ATGTATTGTAAACATTCACA+TGG 0.678770 3:-85672354 MsG0380016609.01.T01:three_prime_UTR
GTGGAACTATCAAATTTGGT+GGG 0.683465 3:+85674858 None:intergenic
GTAATAGAAGAATTAACACA+AGG 0.716696 3:+85674954 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAGAGATCAATAAAAA+GGG - Chr3:85673007-85673026 MsG0380016609.01.T01:CDS 15.0%
!! AATTAAAAAGATGACAAAAT+TGG + Chr3:85672550-85672569 None:intergenic 15.0%
!! ATTATAAAAAAACCAAATCT+AGG - Chr3:85675353-85675372 MsG0380016609.01.T01:five_prime_UTR 15.0%
!! TAATAAAAAGGAAACTATAA+TGG + Chr3:85675294-85675313 None:intergenic 15.0%
!! TTATAAAAAAACCAAATCTA+GGG - Chr3:85675354-85675373 MsG0380016609.01.T01:five_prime_UTR 15.0%
!!! ACAAAAAAAATCAAATTTTG+AGG - Chr3:85672673-85672692 MsG0380016609.01.T01:three_prime_UTR 15.0%
!!! CAAAAAAAATCAAATTTTGA+GGG - Chr3:85672674-85672693 MsG0380016609.01.T01:three_prime_UTR 15.0%
!! AAAGAAGAATAGAATTTCAA+TGG + Chr3:85672926-85672945 None:intergenic 20.0%
!! ACTAAGGAGAAAAAATTAAA+AGG + Chr3:85672632-85672651 None:intergenic 20.0%
!! ATAAAGCTAATTTGGATATT+TGG - Chr3:85673298-85673317 MsG0380016609.01.T01:CDS 20.0%
!! CAATAAAGAGATCAATAAAA+AGG - Chr3:85673006-85673025 MsG0380016609.01.T01:CDS 20.0%
!! CAATTGAATTAATCCATAAT+TGG - Chr3:85673205-85673224 MsG0380016609.01.T01:CDS 20.0%
!! CTAAGGAGAAAAAATTAAAA+GGG + Chr3:85672631-85672650 None:intergenic 20.0%
!! TAAGGAGAAAAAATTAAAAG+GGG + Chr3:85672630-85672649 None:intergenic 20.0%
!! TAATTTGAAAACTCAATAGA+AGG + Chr3:85673664-85673683 None:intergenic 20.0%
!! TATAAAAAAACCAAATCTAG+GGG - Chr3:85675355-85675374 MsG0380016609.01.T01:five_prime_UTR 20.0%
!! TTGGATAAGTTTGAAAATTT+GGG - Chr3:85673331-85673350 MsG0380016609.01.T01:CDS 20.0%
!! TTTGGATAAGTTTGAAAATT+TGG - Chr3:85673330-85673349 MsG0380016609.01.T01:CDS 20.0%
!!! ATAGAATACTTTTATTGCTA+CGG + Chr3:85675513-85675532 None:intergenic 20.0%
!!! CACATTTTGAAGTAATAAAA+AGG + Chr3:85675306-85675325 None:intergenic 20.0%
!!! CTTTTTATTACTTCAAAATG+TGG - Chr3:85675304-85675323 MsG0380016609.01.T01:five_prime_UTR 20.0%
!!! TTTTCAAACTTATCCAAAAT+TGG + Chr3:85673328-85673347 None:intergenic 20.0%
!!! TTTTGTATTGTTGATTCAAT+AGG - Chr3:85673689-85673708 MsG0380016609.01.T01:CDS 20.0%
! AAAGACAGAGAATACATTAT+CGG - Chr3:85674015-85674034 MsG0380016609.01.T01:intron 25.0%
! AAGAAAAACACTAACAACAT+AGG + Chr3:85672803-85672822 None:intergenic 25.0%
! AAGAGAAAGACAAAAAGATA+TGG + Chr3:85672507-85672526 None:intergenic 25.0%
! AATTGGGAATTAAAGATAGT+AGG - Chr3:85673275-85673294 MsG0380016609.01.T01:CDS 25.0%
! AATTTCAATGGCGAAAATAT+AGG + Chr3:85672914-85672933 None:intergenic 25.0%
! AGAGAAAGACAAAAAGATAT+GGG + Chr3:85672506-85672525 None:intergenic 25.0%
! ATAGTAGGATAAAGCTAATT+TGG - Chr3:85673290-85673309 MsG0380016609.01.T01:CDS 25.0%
! ATGAAGAAGAAATGTGAATA+GGG + Chr3:85672404-85672423 None:intergenic 25.0%
! ATGTATTGTAAACATTCACA+TGG - Chr3:85675550-85675569 MsG0380016609.01.T01:five_prime_UTR 25.0%
! ATTAATGGAAAATTACCTTG+TGG + Chr3:85673068-85673087 None:intergenic 25.0%
! ATTTGAGGAGAAGAATAATT+AGG + Chr3:85672579-85672598 None:intergenic 25.0%
! CAAAATTGGTGAAAAAAAAG+AGG + Chr3:85672536-85672555 None:intergenic 25.0%
! GCATTGTTTGAATGTTTAAT+TGG - Chr3:85673388-85673407 MsG0380016609.01.T01:intron 25.0%
! GTAAAAGATAGTAGAACTAA+AGG - Chr3:85674992-85675011 MsG0380016609.01.T01:CDS 25.0%
! GTAATAGAAGAATTAACACA+AGG + Chr3:85672953-85672972 None:intergenic 25.0%
! TATGAAGAAGAAATGTGAAT+AGG + Chr3:85672405-85672424 None:intergenic 25.0%
! TTTATTACTTCAAAATGTGG+AGG - Chr3:85675307-85675326 MsG0380016609.01.T01:five_prime_UTR 25.0%
! TTTGAATGTTTAATTGGCTA+TGG - Chr3:85673394-85673413 MsG0380016609.01.T01:intron 25.0%
!! AAAAAATTAAAAGGGGTATG+TGG + Chr3:85672623-85672642 None:intergenic 25.0%
!! AATATAGGAGAATCTGAAAT+TGG + Chr3:85672899-85672918 None:intergenic 25.0%
!! ATGTTGTTAGTGTTTTTCTT+AGG - Chr3:85672803-85672822 MsG0380016609.01.T01:three_prime_UTR 25.0%
!! GATATTTGGTTAACCAATTT+TGG - Chr3:85673312-85673331 MsG0380016609.01.T01:CDS 25.0%
!! TTCATGTTTTTCTGTTATTG+AGG - Chr3:85673120-85673139 MsG0380016609.01.T01:CDS 25.0%
!! TTTTCTGTTATTGAGGAATT+AGG - Chr3:85673127-85673146 MsG0380016609.01.T01:CDS 25.0%
!! TTTTTCTTAGGAGTTATTGT+TGG - Chr3:85672815-85672834 MsG0380016609.01.T01:three_prime_UTR 25.0%
!!! AAGATTTGGATTTGCTAATT+TGG - Chr3:85674969-85674988 MsG0380016609.01.T01:CDS 25.0%
!!! ACTTATTTTTGTATTGACAC+CGG + Chr3:85674761-85674780 None:intergenic 25.0%
!!! AGATTTGGATTTGCTAATTT+GGG - Chr3:85674970-85674989 MsG0380016609.01.T01:CDS 25.0%
!!! GAAACTTTTTCTTGTTACAA+TGG - Chr3:85672733-85672752 MsG0380016609.01.T01:three_prime_UTR 25.0%
AAACATTCACATGGTAAAGT+TGG - Chr3:85675559-85675578 MsG0380016609.01.T01:five_prime_UTR 30.0%
AAAGATAGTAGAACTAAAGG+TGG - Chr3:85674995-85675014 MsG0380016609.01.T01:CDS 30.0%
AAATAGTACTGCTTCGATAT+TGG + Chr3:85673725-85673744 None:intergenic 30.0%
AAGACAGAGAATACATTATC+GGG - Chr3:85674016-85674035 MsG0380016609.01.T01:intron 30.0%
AAGAGGGTGAAATAAACTAA+AGG + Chr3:85672703-85672722 None:intergenic 30.0%
AAGTTTCAAAACCCTTTAAG+AGG + Chr3:85672720-85672739 None:intergenic 30.0%
AATAGTACTGCTTCGATATT+GGG + Chr3:85673724-85673743 None:intergenic 30.0%
AGAAAGAAGATAAGAAGAAG+AGG + Chr3:85672458-85672477 None:intergenic 30.0%
AGAGGGTGAAATAAACTAAA+GGG + Chr3:85672702-85672721 None:intergenic 30.0%
AGTTTATTTCACCCTCTTAA+AGG - Chr3:85672705-85672724 MsG0380016609.01.T01:three_prime_UTR 30.0%
CACAGAGTTTATAAATTCTG+TGG + Chr3:85675475-85675494 None:intergenic 30.0%
CAGAATTTATAAACTCTGTG+TGG - Chr3:85675475-85675494 MsG0380016609.01.T01:five_prime_UTR 30.0%
CCTTAACTACTAGTGAAATT+GGG - Chr3:85673259-85673278 MsG0380016609.01.T01:CDS 30.0%
GAAAGAAGATAAGAAGAAGA+GGG + Chr3:85672457-85672476 None:intergenic 30.0%
GAGAAAGACAAAAAGATATG+GGG + Chr3:85672505-85672524 None:intergenic 30.0%
GATGATGAATCATTACAAAC+CGG - Chr3:85674811-85674830 MsG0380016609.01.T01:intron 30.0%
GTTGAATCAAAGAGAGATAA+TGG - Chr3:85674553-85674572 MsG0380016609.01.T01:intron 30.0%
GTTTATTTCACCCTCTTAAA+GGG - Chr3:85672706-85672725 MsG0380016609.01.T01:three_prime_UTR 30.0%
TAAACCAAAACCACTCTAAT+TGG - Chr3:85672367-85672386 MsG0380016609.01.T01:three_prime_UTR 30.0%
TAGATGTGTATTACTCTAGT+TGG - Chr3:85674248-85674267 MsG0380016609.01.T01:intron 30.0%
TATTGATGCACAAAGAATCA+GGG + Chr3:85672991-85673010 None:intergenic 30.0%
TCAAATCAAATCAAGCGAAA+AGG + Chr3:85673899-85673918 None:intergenic 30.0%
TCCTTAACTACTAGTGAAAT+TGG - Chr3:85673258-85673277 MsG0380016609.01.T01:CDS 30.0%
TTATTGATGCACAAAGAATC+AGG + Chr3:85672992-85673011 None:intergenic 30.0%
TTGTAATGATTCATCATCAG+AGG + Chr3:85674809-85674828 None:intergenic 30.0%
TTGTAGTCTAGATAAAGGAT+TGG - Chr3:85674915-85674934 MsG0380016609.01.T01:CDS 30.0%
! AATCCATAATTGGTCTATGA+TGG - Chr3:85673215-85673234 MsG0380016609.01.T01:CDS 30.0%
! AGTTTCAAAACCCTTTAAGA+GGG + Chr3:85672719-85672738 None:intergenic 30.0%
! GAGTTTGAAATTTAGACCAT+TGG - Chr3:85675160-85675179 MsG0380016609.01.T01:exon 30.0%
! GGAATTAGGTAGATGATTTT+TGG - Chr3:85673141-85673160 MsG0380016609.01.T01:CDS 30.0%
! TATCTGTTTTCATGTGCTTA+TGG - Chr3:85673955-85673974 MsG0380016609.01.T01:intron 30.0%
! TTGAAGTCATTGATTGAAGA+TGG - Chr3:85674120-85674139 MsG0380016609.01.T01:CDS 30.0%
! TTTGTGTTGGAGAATTTGTT+AGG + Chr3:85672333-85672352 None:intergenic 30.0%
!! ATTTGCTTTTCTTCCTTTCA+GGG - Chr3:85674181-85674200 MsG0380016609.01.T01:CDS 30.0%
!! GTATTGTTGATTCAATAGGA+CGG - Chr3:85673693-85673712 MsG0380016609.01.T01:CDS 30.0%
!! TATTTGCTTTTCTTCCTTTC+AGG - Chr3:85674180-85674199 MsG0380016609.01.T01:CDS 30.0%
!! TTTGGTGTTGCTAAAAGATT+TGG - Chr3:85674955-85674974 MsG0380016609.01.T01:CDS 30.0%
!!! AGAAGAGGGTTTTGTTTTTA+TGG + Chr3:85672443-85672462 None:intergenic 30.0%
!!! GAAGAGGGTTTTGTTTTTAT+GGG + Chr3:85672442-85672461 None:intergenic 30.0%
!!! GGTTTTGTTTTTATGGGTTT+GGG + Chr3:85672436-85672455 None:intergenic 30.0%
!!! TGTTTTGATTAAGACGTGAA+GGG + Chr3:85672482-85672501 None:intergenic 30.0%
AACACCAAATATAACAGCCT+TGG + Chr3:85674944-85674963 None:intergenic 35.0%
AATGGAAAACCCTGCAATTT+GGG - Chr3:85672751-85672770 MsG0380016609.01.T01:three_prime_UTR 35.0%
ACAAGCATATCATCCCATTT+AGG + Chr3:85673804-85673823 None:intergenic 35.0%
AGCCTATATAACAAGTCAAG+CGG + Chr3:85674490-85674509 None:intergenic 35.0%
ATAGTACTGCTTCGATATTG+GGG + Chr3:85673723-85673742 None:intergenic 35.0%
ATCAATCTCTTGAAGGGATT+TGG - Chr3:85675019-85675038 MsG0380016609.01.T01:CDS 35.0%
ATGAAGAAATGGGAATTCCT+TGG - Chr3:85674611-85674630 MsG0380016609.01.T01:intron 35.0%
ATGATCAATTCCGACCTAAA+TGG - Chr3:85673787-85673806 MsG0380016609.01.T01:intron 35.0%
CATTAAAACCCCAAATTGCA+GGG + Chr3:85672763-85672782 None:intergenic 35.0%
CCCAATTTCACTAGTAGTTA+AGG + Chr3:85673262-85673281 None:intergenic 35.0%
CCTTGTGGAACTATCAAATT+TGG + Chr3:85673053-85673072 None:intergenic 35.0%
CTCTTCCATCATGAAGAAAT+GGG - Chr3:85674601-85674620 MsG0380016609.01.T01:intron 35.0%
CTTCTATCGTAACATACCTT+TGG + Chr3:85673617-85673636 None:intergenic 35.0%
CTTGCTTGTAGTCTAGATAA+AGG - Chr3:85674910-85674929 MsG0380016609.01.T01:CDS 35.0%
GAAGAAATGTGAATAGGGAT+AGG + Chr3:85672399-85672418 None:intergenic 35.0%
GAATTCCCATTTCTTCATGA+TGG + Chr3:85674609-85674628 None:intergenic 35.0%
GCCAATGAAACAATCCATTT+CGG + Chr3:85672854-85672873 None:intergenic 35.0%
GTGGAACTATCAAATTTGGT+GGG + Chr3:85673049-85673068 None:intergenic 35.0%
TAATACACATCTACACGTCT+AGG + Chr3:85674241-85674260 None:intergenic 35.0%
TAGGAATGAACCAATTAGAG+TGG + Chr3:85672380-85672399 None:intergenic 35.0%
TATCAAGAAGCAAAAGCTTC+TGG - Chr3:85674706-85674725 MsG0380016609.01.T01:intron 35.0%
TCTCTGTCTTTACAGAAGAA+GGG + Chr3:85674006-85674025 None:intergenic 35.0%
TCTTAGGAGTTATTGTTGGT+TGG - Chr3:85672819-85672838 MsG0380016609.01.T01:three_prime_UTR 35.0%
TCTTATCCATTGCACTTTCA+TGG + Chr3:85673865-85673884 None:intergenic 35.0%
TGAAGAAATGGGAATTCCTT+GGG - Chr3:85674612-85674631 MsG0380016609.01.T01:intron 35.0%
TGAATTCTTAGACCATGAGT+AGG - Chr3:85675443-85675462 MsG0380016609.01.T01:five_prime_UTR 35.0%
TGATCAATTCCGACCTAAAT+GGG - Chr3:85673788-85673807 MsG0380016609.01.T01:intron 35.0%
TGGTGAAAAAAAAGAGGAAG+AGG + Chr3:85672530-85672549 None:intergenic 35.0%
TGTGGAACTATCAAATTTGG+TGG + Chr3:85673050-85673069 None:intergenic 35.0%
TTATCCATCATCTGTATCCA+AGG + Chr3:85673554-85673573 None:intergenic 35.0%
TTCTCTGTCTTTACAGAAGA+AGG + Chr3:85674007-85674026 None:intergenic 35.0%
TTGTTATAGAATGCGTTCTG+AGG + Chr3:85672657-85672676 None:intergenic 35.0%
! CAAAGGTATGTTACGATAGA+AGG - Chr3:85673615-85673634 MsG0380016609.01.T01:intron 35.0%
! CCAAATTTGATAGTTCCACA+AGG - Chr3:85673050-85673069 MsG0380016609.01.T01:CDS 35.0%
! GAAAGTGCAATGGATAAGAA+AGG - Chr3:85673866-85673885 MsG0380016609.01.T01:CDS 35.0%
! GAGTTATTGTTGGTTGGTTA+TGG - Chr3:85672825-85672844 MsG0380016609.01.T01:three_prime_UTR 35.0%
! GTCTAGGTTTTTCTTGTCTT+GGG + Chr3:85674225-85674244 None:intergenic 35.0%
! TGAACCAATTAGAGTGGTTT+TGG + Chr3:85672374-85672393 None:intergenic 35.0%
! TTTTCTTGTCTTGGGATTGA+AGG + Chr3:85674217-85674236 None:intergenic 35.0%
!! AAGCTTGTTGAAGAGAAAGA+TGG - Chr3:85673521-85673540 MsG0380016609.01.T01:intron 35.0%
!! ACCATTAGAAGTATCTTCAC+CGG + Chr3:85673471-85673490 None:intergenic 35.0%
!! ACCGAAATGGATTGTTTCAT+TGG - Chr3:85672850-85672869 MsG0380016609.01.T01:three_prime_UTR 35.0%
!! GAAAATTTGGGTTGAATGTG+TGG - Chr3:85673343-85673362 MsG0380016609.01.T01:CDS 35.0%
!! GGAAACTATAATGGATAACG+TGG + Chr3:85675285-85675304 None:intergenic 35.0%
!! TTTGCTTTTCTTCCTTTCAG+GGG - Chr3:85674182-85674201 MsG0380016609.01.T01:CDS 35.0%
!!! AAATGTGGAGGCTCTTTTTT+TGG - Chr3:85675319-85675338 MsG0380016609.01.T01:five_prime_UTR 35.0%
!!! GAGTGGTTTTGGTTTATGTT+AGG + Chr3:85672363-85672382 None:intergenic 35.0%
!!! GGGTTTTGTTTTTATGGGTT+TGG + Chr3:85672437-85672456 None:intergenic 35.0%
!!! GTGTTTTGATTAAGACGTGA+AGG + Chr3:85672483-85672502 None:intergenic 35.0%
AAGGAGCTGTGGAATATTTG+AGG + Chr3:85672594-85672613 None:intergenic 40.0%
AATGACTAGCATCTTCGGTA+CGG + Chr3:85674875-85674894 None:intergenic 40.0%
ACATTATCGGGCGAAGAATA+TGG - Chr3:85674028-85674047 MsG0380016609.01.T01:intron 40.0%
ACGTGGATCATCCAAAACAA+TGG + Chr3:85675268-85675287 None:intergenic 40.0%
ACTGTTCGATCAAGATCCAA+TGG + Chr3:85675179-85675198 None:intergenic 40.0%
ACTTCTGACGACAAACCAAA+GGG - Chr3:85674844-85674863 MsG0380016609.01.T01:intron 40.0%
AGGTGGAATCAATCTCTTGA+AGG - Chr3:85675012-85675031 MsG0380016609.01.T01:CDS 40.0%
ATGCACAAAGAATCAGGGTT+TGG + Chr3:85672986-85673005 None:intergenic 40.0%
ATGGAAAACCCTGCAATTTG+GGG - Chr3:85672752-85672771 MsG0380016609.01.T01:three_prime_UTR 40.0%
ATGGTACAAAAGATTGAGCC+CGG - Chr3:85674673-85674692 MsG0380016609.01.T01:intron 40.0%
CAACCAATGTAATGCGCATT+TGG + Chr3:85675072-85675091 None:intergenic 40.0%
CAATGGAAAACCCTGCAATT+TGG - Chr3:85672750-85672769 MsG0380016609.01.T01:three_prime_UTR 40.0%
CATCCAAATGCGCATTACAT+TGG - Chr3:85675066-85675085 MsG0380016609.01.T01:CDS 40.0%
CATTATCGGGCGAAGAATAT+GGG - Chr3:85674029-85674048 MsG0380016609.01.T01:intron 40.0%
CTATGCAGTTCTCAGAAATC+CGG - Chr3:85673449-85673468 MsG0380016609.01.T01:intron 40.0%
CTCTGTCTTTACAGAAGAAG+GGG + Chr3:85674005-85674024 None:intergenic 40.0%
CTTGGGAAATTGCAAAGCTT+GGG - Chr3:85674629-85674648 MsG0380016609.01.T01:intron 40.0%
CTTGTTGAAGAGAAAGATGG+AGG - Chr3:85673524-85673543 MsG0380016609.01.T01:intron 40.0%
CTTTCTCATTCCCCTAGATT+TGG + Chr3:85675368-85675387 None:intergenic 40.0%
GCACCATCATAGACCAATTA+TGG + Chr3:85673221-85673240 None:intergenic 40.0%
GCATATCATCCCATTTAGGT+CGG + Chr3:85673800-85673819 None:intergenic 40.0%
GCATTAAAACCCCAAATTGC+AGG + Chr3:85672764-85672783 None:intergenic 40.0%
GCTCTTCCATCATGAAGAAA+TGG - Chr3:85674600-85674619 MsG0380016609.01.T01:intron 40.0%
GGTGGAATCAATCTCTTGAA+GGG - Chr3:85675013-85675032 MsG0380016609.01.T01:CDS 40.0%
GTGACCAAGGCTGTTATATT+TGG - Chr3:85674937-85674956 MsG0380016609.01.T01:CDS 40.0%
GTTGATGTTGGATCAAGATC+GGG - Chr3:85675088-85675107 MsG0380016609.01.T01:CDS 40.0%
GTTGGTTATGGAAACCGAAA+TGG - Chr3:85672837-85672856 MsG0380016609.01.T01:three_prime_UTR 40.0%
TACCTTTGTGACGCAATAGT+AGG + Chr3:85674067-85674086 None:intergenic 40.0%
TACTTCTGACGACAAACCAA+AGG - Chr3:85674843-85674862 MsG0380016609.01.T01:intron 40.0%
TCCGGTGAAGATACTTCTAA+TGG - Chr3:85673467-85673486 MsG0380016609.01.T01:intron 40.0%
TCTTCCTTGGATACAGATGA+TGG - Chr3:85673547-85673566 MsG0380016609.01.T01:intron 40.0%
TTCTTGATAAGCGCGTAAAC+CGG + Chr3:85674695-85674714 None:intergenic 40.0%
TTGGGAAATTGCAAAGCTTG+GGG - Chr3:85674630-85674649 MsG0380016609.01.T01:intron 40.0%
! AGATAAAGGATTGGTGACCA+AGG - Chr3:85674924-85674943 MsG0380016609.01.T01:CDS 40.0%
! CGCATTACATTGGTTGATGT+TGG - Chr3:85675076-85675095 MsG0380016609.01.T01:CDS 40.0%
! CGTCTAGGTTTTTCTTGTCT+TGG + Chr3:85674226-85674245 None:intergenic 40.0%
! GGTTGATGTTGGATCAAGAT+CGG - Chr3:85675087-85675106 MsG0380016609.01.T01:CDS 40.0%
! GTTAGGTGTTGTGTTTGTGT+TGG + Chr3:85672346-85672365 None:intergenic 40.0%
!! AAAGTCTCGGCTTGTTGATT+TGG - Chr3:85675384-85675403 MsG0380016609.01.T01:five_prime_UTR 40.0%
!! AAGTCTCGGCTTGTTGATTT+GGG - Chr3:85675385-85675404 MsG0380016609.01.T01:five_prime_UTR 40.0%
!! AATGCGTTCTGAGGAAACTA+AGG + Chr3:85672648-85672667 None:intergenic 40.0%
!! CACCGCTTGACTTGTTATAT+AGG - Chr3:85674485-85674504 MsG0380016609.01.T01:intron 40.0%
!! TTGCTTTTCTTCCTTTCAGG+GGG - Chr3:85674183-85674202 MsG0380016609.01.T01:CDS 40.0%
AACAAATCCCTCACCATCTC+AGG + Chr3:85673762-85673781 None:intergenic 45.0%
ACTTTCATGGTTCCAGTGGT+AGG + Chr3:85673852-85673871 None:intergenic 45.0%
AGAAAGATGGAGGTCTTCCT+TGG - Chr3:85673534-85673553 MsG0380016609.01.T01:intron 45.0%
CATGCCTGGTAACTCATAGT+CGG + Chr3:85673584-85673603 None:intergenic 45.0%
CCAAAACAATGGCTTCGAGA+GGG + Chr3:85675257-85675276 None:intergenic 45.0%
CCAAGCTTTGCAATTTCCCA+AGG + Chr3:85674631-85674650 None:intergenic 45.0%
CCACCAATGACTAGCATCTT+CGG + Chr3:85674880-85674899 None:intergenic 45.0%
CCTGAGTACTTGCAATCCAT+CGG - Chr3:85674781-85674800 MsG0380016609.01.T01:intron 45.0%
CCTTGGGAAATTGCAAAGCT+TGG - Chr3:85674628-85674647 MsG0380016609.01.T01:intron 45.0%
CTAGGGGAATGAGAAAGTCT+CGG - Chr3:85675371-85675390 MsG0380016609.01.T01:five_prime_UTR 45.0%
GTACCGAAGATGCTAGTCAT+TGG - Chr3:85674874-85674893 MsG0380016609.01.T01:CDS 45.0%
GTCAGAAGTAATCGCACTTC+CGG + Chr3:85674833-85674852 None:intergenic 45.0%
GTCCTACTATTGCGTCACAA+AGG - Chr3:85674062-85674081 MsG0380016609.01.T01:CDS 45.0%
TACTCCGACTATGAGTTACC+AGG - Chr3:85673577-85673596 MsG0380016609.01.T01:intron 45.0%
TACTGCTTCGATATTGGGGA+GGG + Chr3:85673719-85673738 None:intergenic 45.0%
TCCAAAACAATGGCTTCGAG+AGG + Chr3:85675258-85675277 None:intergenic 45.0%
TCTTGATAAGCGCGTAAACC+GGG + Chr3:85674694-85674713 None:intergenic 45.0%
TGAAGATGCAACTCCTGAGA+TGG - Chr3:85673746-85673765 MsG0380016609.01.T01:intron 45.0%
TTCATCATCAGAGGATCCGA+TGG + Chr3:85674800-85674819 None:intergenic 45.0%
TTGCACTTTCATGGTTCCAG+TGG + Chr3:85673856-85673875 None:intergenic 45.0%
! AAGGGGTATGTGGTTGAAGA+AGG + Chr3:85672613-85672632 None:intergenic 45.0%
! AGATGGTGAGGGATTTGTTC+TGG - Chr3:85673763-85673782 MsG0380016609.01.T01:intron 45.0%
! CTGGAACCATGAAAGTGCAA+TGG - Chr3:85673856-85673875 MsG0380016609.01.T01:CDS 45.0%
! GATGGTGAGGGATTTGTTCT+GGG - Chr3:85673764-85673783 MsG0380016609.01.T01:intron 45.0%
! TTTGGTGGGTGAAGAAGAAG+AGG + Chr3:85673035-85673054 None:intergenic 45.0%
!! GCTTGTTGATTTGGGAGAGA+GGG - Chr3:85675393-85675412 MsG0380016609.01.T01:five_prime_UTR 45.0%
!! TTAGAAGAGTGTCCTACCAC+TGG - Chr3:85673837-85673856 MsG0380016609.01.T01:intron 45.0%
!!! CTGTGGTTTTGACCTACTCA+TGG + Chr3:85675458-85675477 None:intergenic 45.0%
!! TAACTTATTTATTTAATTAA+TGG + Chr3:85673083-85673102 None:intergenic 5.0%
ACTCTCTCGTTCCGCTTTCA+TGG - Chr3:85674735-85674754 MsG0380016609.01.T01:intron 50.0%
AGGACAATCTACCCCCTGAA+AGG + Chr3:85674197-85674216 None:intergenic 50.0%
ATGAAAGCGGAACGAGAGAG+TGG + Chr3:85674736-85674755 None:intergenic 50.0%
ATGCAACTCCTGAGATGGTG+AGG - Chr3:85673751-85673770 MsG0380016609.01.T01:intron 50.0%
ATTGACACCGGCCATGAAAG+CGG + Chr3:85674749-85674768 None:intergenic 50.0%
CCGAAGATGCTAGTCATTGG+TGG - Chr3:85674877-85674896 MsG0380016609.01.T01:CDS 50.0%
CGACTATGAGTTACCAGGCA+TGG - Chr3:85673582-85673601 MsG0380016609.01.T01:intron 50.0%
GAAGAATATGGGAATGCGGG+AGG - Chr3:85674040-85674059 MsG0380016609.01.T01:CDS 50.0%
GATGTTGGATCAAGATCGGG+CGG - Chr3:85675091-85675110 MsG0380016609.01.T01:CDS 50.0%
GGCGAAGAATATGGGAATGC+GGG - Chr3:85674037-85674056 MsG0380016609.01.T01:intron 50.0%
GGGCGAAGAATATGGGAATG+CGG - Chr3:85674036-85674055 MsG0380016609.01.T01:intron 50.0%
GTACTGCTTCGATATTGGGG+AGG + Chr3:85673720-85673739 None:intergenic 50.0%
TGCAACTCCTGAGATGGTGA+GGG - Chr3:85673752-85673771 MsG0380016609.01.T01:intron 50.0%
TGTGGTTGAAGAAGGAGCTG+TGG + Chr3:85672605-85672624 None:intergenic 50.0%
! CCCTCTCGAAGCCATTGTTT+TGG - Chr3:85675254-85675273 MsG0380016609.01.T01:five_prime_UTR 50.0%
! TCTAGTTGGTGCATTCGAGC+AGG - Chr3:85674262-85674281 MsG0380016609.01.T01:intron 50.0%
!! CCGATGGATTGCAAGTACTC+AGG + Chr3:85674784-85674803 None:intergenic 50.0%
!! GGCTTGTTGATTTGGGAGAG+AGG - Chr3:85675392-85675411 MsG0380016609.01.T01:five_prime_UTR 50.0%
GCAAAGCTTGGGGTGCGAAA+AGG - Chr3:85674640-85674659 MsG0380016609.01.T01:intron 55.0%
GGCATGGCGTAGAGAACCAA+AGG - Chr3:85673598-85673617 MsG0380016609.01.T01:intron 55.0%
TCTCGTTCCGCTTTCATGGC+CGG - Chr3:85674739-85674758 MsG0380016609.01.T01:intron 55.0%
TTCGGTACGGTCATGCCCTT+TGG + Chr3:85674862-85674881 None:intergenic 55.0%
! GCGAAAAGGCATGTGGGGAA+TGG - Chr3:85674654-85674673 MsG0380016609.01.T01:intron 55.0%
! TGGGGTGCGAAAAGGCATGT+GGG - Chr3:85674648-85674667 MsG0380016609.01.T01:intron 55.0%
! TTGGGGTGCGAAAAGGCATG+TGG - Chr3:85674647-85674666 MsG0380016609.01.T01:intron 55.0%
! TTGGTTCTCTACGCCATGCC+TGG + Chr3:85673598-85673617 None:intergenic 55.0%
! GGGGTGCGAAAAGGCATGTG+GGG - Chr3:85674649-85674668 MsG0380016609.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85672287 85675639 85672287 ID=MsG0380016609.01;Name=MsG0380016609.01
Chr3 mRNA 85672287 85675639 85672287 ID=MsG0380016609.01.T01;Parent=MsG0380016609.01;Name=MsG0380016609.01.T01;_AED=0.45;_eAED=0.45;_QI=465|1|1|1|1|1|6|637|424
Chr3 exon 85672287 85673372 85672287 ID=MsG0380016609.01.T01:exon:33736;Parent=MsG0380016609.01.T01
Chr3 exon 85673643 85673724 85673643 ID=MsG0380016609.01.T01:exon:33735;Parent=MsG0380016609.01.T01
Chr3 exon 85673843 85673926 85673843 ID=MsG0380016609.01.T01:exon:33734;Parent=MsG0380016609.01.T01
Chr3 exon 85674039 85674215 85674039 ID=MsG0380016609.01.T01:exon:33733;Parent=MsG0380016609.01.T01
Chr3 exon 85674307 85674469 85674307 ID=MsG0380016609.01.T01:exon:33732;Parent=MsG0380016609.01.T01
Chr3 exon 85674855 85675639 85674855 ID=MsG0380016609.01.T01:exon:33731;Parent=MsG0380016609.01.T01
Chr3 five_prime_UTR 85675175 85675639 85675175 ID=MsG0380016609.01.T01:five_prime_utr;Parent=MsG0380016609.01.T01
Chr3 CDS 85674855 85675174 85674855 ID=MsG0380016609.01.T01:cds;Parent=MsG0380016609.01.T01
Chr3 CDS 85674307 85674469 85674307 ID=MsG0380016609.01.T01:cds;Parent=MsG0380016609.01.T01
Chr3 CDS 85674039 85674215 85674039 ID=MsG0380016609.01.T01:cds;Parent=MsG0380016609.01.T01
Chr3 CDS 85673843 85673926 85673843 ID=MsG0380016609.01.T01:cds;Parent=MsG0380016609.01.T01
Chr3 CDS 85673643 85673724 85673643 ID=MsG0380016609.01.T01:cds;Parent=MsG0380016609.01.T01
Chr3 CDS 85672924 85673372 85672924 ID=MsG0380016609.01.T01:cds;Parent=MsG0380016609.01.T01
Chr3 three_prime_UTR 85672287 85672923 85672287 ID=MsG0380016609.01.T01:three_prime_utr;Parent=MsG0380016609.01.T01
Gene Sequence

>MsG0380016609.01.T01

ATGGAAAACCCTGCAATTTGGGGTTTTAATGCAACGATGTTTATGAGTCCTATGTTGTTAGTGTTTTTCTTAGGAGTTATTGTTGGTTGGTTATGGAAACCGAAATGGATTGTTTCATTGGCTAAGTCTTTTGATTTAGCTTCACCAATTTCAGATTCTCCTATATTTTCGCCATTGAAATTCTATTCTTCTTTGTCTCCTTGTGTTAATTCTTCTATTACAATGCAAAATCCAAACCCTGATTCTTTGTGCATCAATAAAGAGATCAATAAAAAGGGTTCCTCTTCTTCTTCACCCACCAAATTTGATAGTTCCACAAGTTCTCAGAAATCCGGTGAAGATACTTCTAATGGTGTTACAATCGATGATTTACATCATTTATACAAGCTTGTTGAAGAGAAAGATGGAGGTCTTCCTTGGATACAGATGATGGATAAATCTACTCCGACTATGAGTTACCAGGCATGGCGTAGAGAACCAAAGGACGGCCCTCCCCAATATCGAAGCAGTACTATTTTTGAAGATGCAACTCCTGAGATGGTGAGGGATTTGTTCTGGGATGATCAATTCCGACCTAAATGGGATGATATGCTTGTGAACTCAACAACATTAGAAGAGTGTCCTACCACTGGAACCATGAAAGTGCAATGGATAAGAAAGTTCCCCTTCTTCTGTAAAGACAGAGAATACATTATCGGGCGAAGAATATGGGAATGCGGGAGGTCCTACTATTGCGTCACAAAGGGGGTAGATTGTCCTTCAATCCCAAGACAAGAAAAACCTAGACGTGTAGATGTGTATTACTCTAGTTGGTGCATTCGAGCAGTTGAATCAAAGAGAGATAATGGTCAACTGACTGCATGTGAAGTTTTGCTCTTCCATCATGAAGAAATGGGAATTCCTTGGGAAATTGCAAAGCTTGGGGTGCGAAAAGGCATGTGGGGAATGGTACAAAAGATTGAGCCCGGTTTACGCGCTTATCAAGAAGCAAAAGCTTCTGGAGCTCCACTCTCTCGTTCCGCTTTCATGGCCGGTGTCAATACAAAAATAAGTCCTGAGTACTTGCAATCCATCGGATCCTCTGATGATGAATCATTACAAACCGGAAGTGCGATTACTTCTGACGACAAACCAAAGGGCATGACCGTACCGAAGATGCTAGTCATTGGTGGTGCTGTTGCTCTTGCTTGTAGTCTAGATAAAGGATTGGTGACCAAGGCTGTTATATTTGGTGTTGCTAAAAGATTTGGATTTGCTAATTTGGGTAAAAGATAG
Protein sequence

>MsG0380016609.01.T01

MENPAIWGFNATMFMSPMLLVFFLGVIVGWLWKPKWIVSLAKSFDLASPISDSPIFSPLKFYSSLSPCVNSSITMQNPNPDSLCINKEINKKGSSSSSPTKFDSSTSSQKSGEDTSNGVTIDDLHHLYKLVEEKDGGLPWIQMMDKSTPTMSYQAWRREPKDGPPQYRSSTIFEDATPEMVRDLFWDDQFRPKWDDMLVNSTTLEECPTTGTMKVQWIRKFPFFCKDREYIIGRRIWECGRSYYCVTKGVDCPSIPRQEKPRRVDVYYSSWCIRAVESKRDNGQLTACEVLLFHHEEMGIPWEIAKLGVRKGMWGMVQKIEPGLRAYQEAKASGAPLSRSAFMAGVNTKISPEYLQSIGSSDDESLQTGSAITSDDKPKGMTVPKMLVIGGAVALACSLDKGLVTKAVIFGVAKRFGFANLGKR*