AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036755.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036755.01.T01 MTR_0003s0660 96.944 360 11 0 1 360 47 406 0.0 720
MsG0780036755.01.T01 MTR_7g018290 95.129 349 17 0 1 349 1 349 0.0 687
MsG0780036755.01.T01 MTR_7g018310 88.539 349 19 1 1 349 47 374 0.0 626
MsG0780036755.01.T01 MTR_7g018320 82.286 350 12 2 1 350 47 346 0.0 565
MsG0780036755.01.T01 MTR_0076s0020 68.451 355 109 3 3 356 1 353 1.51e-177 497
MsG0780036755.01.T01 MTR_8g069905 64.387 351 123 2 1 350 1 350 1.01e-164 465
MsG0780036755.01.T01 MTR_2g020990 42.899 338 179 7 9 332 5 342 3.43e-80 249
MsG0780036755.01.T01 MTR_4g118320 40.469 341 179 7 9 331 5 339 7.03e-77 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036755.01.T01 AT3G02470 62.943 367 123 6 3 357 1 366 5.86e-161 455
MsG0780036755.01.T01 AT3G02470 62.943 367 123 6 3 357 1 366 5.86e-161 455
MsG0780036755.01.T01 AT3G02470 62.943 367 123 6 3 357 1 366 5.86e-161 455
MsG0780036755.01.T01 AT5G15950 63.536 362 127 4 3 359 1 362 1.29e-160 454
MsG0780036755.01.T01 AT5G15950 63.536 362 127 4 3 359 1 362 1.29e-160 454
MsG0780036755.01.T01 AT3G25570 64.756 349 119 3 3 347 1 349 8.63e-158 447
MsG0780036755.01.T01 AT3G25570 64.756 349 119 3 3 347 1 349 8.63e-158 447
MsG0780036755.01.T01 AT5G18930 42.478 339 178 7 9 331 5 342 3.40e-83 257
MsG0780036755.01.T01 AT3G17717 49.550 111 54 2 182 291 18 127 6.33e-30 112

Find 113 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATAATTGGAATTGTTTA+AGG 0.119777 7:-13232613 None:intergenic
AAATCACATATGTCAGATTT+TGG 0.121377 7:-13234608 None:intergenic
CAAAGGCTCAAATTTATTTA+AGG 0.142594 7:-13235087 None:intergenic
TCAAAATTCTGATTCATTAA+AGG 0.178904 7:+13232806 MsG0780036755.01.T01:five_prime_UTR
CAAATTTATTTAAGGTTAAC+AGG 0.251411 7:-13235079 None:intergenic
AACGAAGAGAAAATAATAAT+TGG 0.267853 7:-13232625 None:intergenic
AAATTTCCTTTGGAGGTTAA+AGG 0.271383 7:+13234857 MsG0780036755.01.T01:CDS
GCTGTTCTTGACAGCTATTT+TGG 0.280170 7:+13234359 MsG0780036755.01.T01:CDS
CAAAATTCTGATTCATTAAA+GGG 0.283961 7:+13232807 MsG0780036755.01.T01:five_prime_UTR
GCATAACTGAATCCATCTTC+TGG 0.285767 7:-13234701 None:intergenic
TTGTTTAAGGTTTAAGATAT+TGG 0.287064 7:-13232600 None:intergenic
TGGGTTGTGATATAGTTCTT+AGG 0.327149 7:+13233800 MsG0780036755.01.T01:five_prime_UTR
GTTTCAGAATCTCGTCAATT+TGG 0.331728 7:-13234076 None:intergenic
GGTTTGATGACTAAGAATTC+TGG 0.333324 7:+13234569 MsG0780036755.01.T01:CDS
GAGGAGGGAGGACAAGAAAA+AGG 0.353170 7:-13233861 None:intergenic
GAAATTACGTTTGAGTAATC+AGG 0.353560 7:-13233654 None:intergenic
ATGCTGATAAGTCACAAATT+TGG 0.357352 7:+13234420 MsG0780036755.01.T01:CDS
AAAACTTGACAAATTTCCTT+TGG 0.369192 7:+13234847 MsG0780036755.01.T01:CDS
CAAAAGCTCAAATTTATTCA+AGG 0.394117 7:-13235178 None:intergenic
TGAGGGAATGATTGAGCTCC+AGG 0.394925 7:-13234314 None:intergenic
TCAAGGCCATAGACAGCTTC+CGG 0.398954 7:-13234479 None:intergenic
AAAATCTCAGGATGGTTTGC+GGG 0.408047 7:-13233776 None:intergenic
GCTTCACCGGAAGCTGTCTA+TGG 0.409050 7:+13234473 MsG0780036755.01.T01:CDS
TCTTCGTTCTTTCTTTCCGT+TGG 0.410843 7:+13232640 MsG0780036755.01.T01:five_prime_UTR
GAGGGGAGCTTCGTACAAAA+AGG 0.415436 7:-13233577 None:intergenic
AAATCTCTGAACGAACTTGT+TGG 0.417597 7:+13234758 MsG0780036755.01.T01:CDS
GGTCTACTCTGAAATGTTGC+TGG 0.418240 7:+13234975 MsG0780036755.01.T01:CDS
CGTACCTTTGTTCGAAATGA+TGG 0.419044 7:+13234938 MsG0780036755.01.T01:CDS
CAATGCTCGGAGGCCTTGTC+CGG 0.426270 7:-13234045 None:intergenic
CTCACTATCTAATGATTATG+TGG 0.427463 7:+13234121 MsG0780036755.01.T01:CDS
GACCAGTCATGCACATTTCA+AGG 0.428099 7:-13234496 None:intergenic
GTTTGTAGAGAAAGGAAAGC+AGG 0.432170 7:-13233901 None:intergenic
CATAACTGAATCCATCTTCT+GGG 0.436732 7:-13234700 None:intergenic
AATCTCGTCAATTTGGTCTC+TGG 0.441714 7:-13234069 None:intergenic
ACTTGACAAATTTCCTTTGG+AGG 0.442578 7:+13234850 MsG0780036755.01.T01:CDS
TGACTAAGAATTCTGGAATC+AGG 0.442912 7:+13234576 MsG0780036755.01.T01:CDS
TTCTGGGGTGACATGGATAG+TGG 0.444514 7:-13234684 None:intergenic
TTCTCTGATCCTGCCGGACA+AGG 0.468245 7:+13234032 MsG0780036755.01.T01:CDS
ATCCATGTCACCCCAGAAGA+TGG 0.468783 7:+13234689 MsG0780036755.01.T01:CDS
GCTCGGAGGCCTTGTCCGGC+AGG 0.471724 7:-13234041 None:intergenic
AAGACAGATGCATCTTCAGC+AGG 0.478706 7:+13234548 MsG0780036755.01.T01:CDS
GGCCTTGAAATGTGCATGAC+TGG 0.484118 7:+13234494 MsG0780036755.01.T01:CDS
CCAGGTACAACACTCACATA+TGG 0.485537 7:-13235262 None:intergenic
TACTCAATGAACGGAATTGA+AGG 0.488720 7:+13234650 MsG0780036755.01.T01:CDS
TTTCCAGGAAAGTGTGAATG+AGG 0.492009 7:+13233506 MsG0780036755.01.T01:intron
TCAGCAAGCTTAAGAATGGC+AGG 0.496187 7:-13234236 None:intergenic
TGAGAACGAGGAGGAAGTGA+AGG 0.496603 7:+13235006 MsG0780036755.01.T01:CDS
TCAACAATGGTGCATTCTGC+TGG 0.497159 7:-13234098 None:intergenic
TTTGGTCTCTGGACAATGCT+CGG 0.511847 7:-13234058 None:intergenic
GCCATTCTTAAGCTTGCTGA+TGG 0.512795 7:+13234239 MsG0780036755.01.T01:CDS
CTCTGAACGAACTTGTTGGA+AGG 0.516546 7:+13234762 MsG0780036755.01.T01:CDS
TCATGGCCATCTTGAATCAA+AGG 0.517158 7:-13233941 None:intergenic
GGAAAGTGTGAATGAGGTAA+TGG 0.520386 7:+13233512 MsG0780036755.01.T01:intron
CCATATGTGAGTGTTGTACC+TGG 0.527907 7:+13235262 MsG0780036755.01.T01:three_prime_UTR
ACCATCAGCAAGCTTAAGAA+TGG 0.528500 7:-13234240 None:intergenic
GACTGGTCTAGATAAAGAAA+AGG 0.529734 7:+13234511 MsG0780036755.01.T01:CDS
CATCACCCATCATGTAAGCT+TGG 0.530202 7:-13234400 None:intergenic
TTGTATCCTTTAACCTCCAA+AGG 0.534196 7:-13234863 None:intergenic
AACTTATAATCAAAACCTGT+GGG 0.535838 7:+13234189 MsG0780036755.01.T01:CDS
GTCAAGAACAGCAACTTCCT+CGG 0.536338 7:-13234348 None:intergenic
TACTTACAGTTTGTACACAT+TGG 0.536734 7:-13232855 None:intergenic
ATCCATCTTCTGGGGTGACA+TGG 0.537196 7:-13234691 None:intergenic
TTTGTAGAGAAAGGAAAGCA+GGG 0.541235 7:-13233900 None:intergenic
TCCGTTCATTGAGTACCCGC+AGG 0.541672 7:-13234642 None:intergenic
GAGAGGATCAATGAAGTACT+TGG 0.543051 7:+13234893 MsG0780036755.01.T01:CDS
AATGAAGTACTTGGTGAAGA+TGG 0.547238 7:+13234902 MsG0780036755.01.T01:CDS
TCTGAACGAACTTGTTGGAA+GGG 0.547830 7:+13234763 MsG0780036755.01.T01:CDS
TGCTAAGCTAGAAGCTTCAC+CGG 0.553986 7:+13234460 MsG0780036755.01.T01:CDS
AGGGATTGACAGAAGCAACT+TGG 0.557736 7:-13234216 None:intergenic
TTTATTTAGAGATATAATCC+AGG 0.567979 7:-13235280 None:intergenic
CGGTAGCCAAGCTTACATGA+TGG 0.573036 7:+13234394 MsG0780036755.01.T01:CDS
CAACATTTCAGAGTAGACCT+TGG 0.577948 7:-13234971 None:intergenic
CATCATGTAAGCTTGGCTAC+CGG 0.578005 7:-13234393 None:intergenic
AAACTTATAATCAAAACCTG+TGG 0.578450 7:+13234188 MsG0780036755.01.T01:CDS
AAGGAGATATATTAGTACTT+CGG 0.580147 7:+13235025 MsG0780036755.01.T01:exon
GTCTTCAATGATGTATCCGA+GGG 0.580839 7:-13233595 None:intergenic
AAGCAACTTGGTAGTCCCAC+AGG 0.588426 7:-13234204 None:intergenic
CCCTGCGGGTACTCAATGAA+CGG 0.591166 7:+13234641 MsG0780036755.01.T01:CDS
GCATTGCACATTGATACAAA+TGG 0.591805 7:+13234821 MsG0780036755.01.T01:CDS
GGTAGCCAAGCTTACATGAT+GGG 0.595267 7:+13234395 MsG0780036755.01.T01:CDS
GCCATGACAAACTCAGCTAT+CGG 0.597878 7:+13233957 MsG0780036755.01.T01:CDS
TATGCAAGCTTTGAAGCAGT+AGG 0.598849 7:+13234719 MsG0780036755.01.T01:CDS
GAAATCTAGAATCTTCAGAT+CGG 0.603740 7:+13232829 MsG0780036755.01.T01:five_prime_UTR
ATTGAAGACATTCGACCTAA+CGG 0.604333 7:+13233609 MsG0780036755.01.T01:five_prime_UTR
ACCGATAGCTGAGTTTGTCA+TGG 0.606711 7:-13233958 None:intergenic
AATGCAACAGAAAACTCAGC+TGG 0.608895 7:-13234803 None:intergenic
ATGATGGCTGCACATCTCCA+AGG 0.613417 7:+13234954 MsG0780036755.01.T01:CDS
CCGTTCATTGAGTACCCGCA+GGG 0.623956 7:-13234641 None:intergenic
TCTAGATAAAGAAAAGGCAT+CGG 0.625471 7:+13234517 MsG0780036755.01.T01:CDS
TGTCTTCAATGATGTATCCG+AGG 0.625837 7:-13233596 None:intergenic
TCCTCGGAAAAGCTACGATG+AGG 0.629882 7:-13234332 None:intergenic
GAGGTAATGGAGTCAAAAGG+TGG 0.634794 7:+13233525 MsG0780036755.01.T01:five_prime_UTR
AAGGATACAACTGTGGAGAG+AGG 0.638648 7:+13234876 MsG0780036755.01.T01:CDS
ATTAGATAGTGAGTCAACAA+TGG 0.640442 7:-13234111 None:intergenic
CCTCGGAAAAGCTACGATGA+GGG 0.644940 7:-13234331 None:intergenic
AATGAGGTAATGGAGTCAAA+AGG 0.645880 7:+13233522 MsG0780036755.01.T01:five_prime_UTR
CTGGAGTGAGGATGAGAACG+AGG 0.648538 7:+13234994 MsG0780036755.01.T01:CDS
GAGGAGCGAAAGAAAACCAA+CGG 0.648663 7:-13232656 None:intergenic
TCTGAAATGTTGCTGGAGTG+AGG 0.649297 7:+13234982 MsG0780036755.01.T01:CDS
ATAAATGAATAAGCTTGACT+CGG 0.650625 7:-13234159 None:intergenic
GCAGCCATCATTTCGAACAA+AGG 0.652571 7:-13234942 None:intergenic
GAGGGAATGATTGAGCTCCA+GGG 0.653629 7:-13234313 None:intergenic
CATCATTTCGAACAAAGGTA+CGG 0.654774 7:-13234937 None:intergenic
CAGCAAGCTTAAGAATGGCA+GGG 0.657952 7:-13234235 None:intergenic
TTATTGATTCGCTTTCACAA+AGG 0.658590 7:-13235104 None:intergenic
TCTTAACATTGCTGTGAAGT+CGG 0.668539 7:+13234262 MsG0780036755.01.T01:CDS
GAGGTTAAAGGATACAACTG+TGG 0.681618 7:+13234869 MsG0780036755.01.T01:CDS
GGTCTCTGGACAATGCTCGG+AGG 0.685264 7:-13234055 None:intergenic
ATAACTGAATCCATCTTCTG+GGG 0.687446 7:-13234699 None:intergenic
GAGTGAGGATGAGAACGAGG+AGG 0.703166 7:+13234997 MsG0780036755.01.T01:CDS
GAAGACATTCGACCTAACGG+TGG 0.726543 7:+13233612 MsG0780036755.01.T01:five_prime_UTR
AAGTCGGTGAGATACACTCG+CGG 0.764779 7:+13234278 MsG0780036755.01.T01:CDS
TCTTCAATGATGTATCCGAG+GGG 0.782887 7:-13233594 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTGTTTTGATT+AGG + Chr7:13232776-13232795 MsG0780036755.01.T01:intron 10.0%
!! AAATAATAAGTAAATCATGA+AGG - Chr7:13233400-13233419 None:intergenic 15.0%
!! ATAATAATTGGAATTGTTTA+AGG - Chr7:13232616-13232635 None:intergenic 15.0%
!!! GATAATATTTTAGTTTATTG+AGG + Chr7:13235236-13235255 MsG0780036755.01.T01:three_prime_UTR 15.0%
!!! TAACATAACACTTTTTTTTA+AGG - Chr7:13235148-13235167 None:intergenic 15.0%
!! AACGAAGAGAAAATAATAAT+TGG - Chr7:13232628-13232647 None:intergenic 20.0%
!! AATTGAGAAAAAAACACATA+AGG - Chr7:13232718-13232737 None:intergenic 20.0%
!! ACTGCATAATAAATGTAAAA+AGG - Chr7:13233753-13233772 None:intergenic 20.0%
!! CAAAATTCTGATTCATTAAA+GGG + Chr7:13232807-13232826 MsG0780036755.01.T01:five_prime_UTR 20.0%
!! CTGCATAATAAATGTAAAAA+GGG - Chr7:13233752-13233771 None:intergenic 20.0%
!! TCAAAATTCTGATTCATTAA+AGG + Chr7:13232806-13232825 MsG0780036755.01.T01:five_prime_UTR 20.0%
!! TTTATTTAGAGATATAATCC+AGG - Chr7:13235283-13235302 None:intergenic 20.0%
!!! AATGCAATTATTGCTATTTT+TGG + Chr7:13233459-13233478 MsG0780036755.01.T01:intron 20.0%
!!! ATGCAATTATTGCTATTTTT+GGG + Chr7:13233460-13233479 MsG0780036755.01.T01:intron 20.0%
!!! CAAATTTATTTAAGGTTAAC+AGG - Chr7:13235082-13235101 None:intergenic 20.0%
!!! GAGATAACTTTTTTTGAAAA+TGG + Chr7:13234005-13234024 MsG0780036755.01.T01:CDS 20.0%
!!! TAGGTTATTGTTTATGTTTT+AGG + Chr7:13232959-13232978 MsG0780036755.01.T01:intron 20.0%
!!! TTATGTGTTTTTTTCTCAAT+TGG + Chr7:13232717-13232736 MsG0780036755.01.T01:intron 20.0%
!!! TTCAGATTTTAAAAACAGTT+GGG - Chr7:13233076-13233095 None:intergenic 20.0%
!!! TTGTAAATTCTCGTAATTTT+AGG + Chr7:13232884-13232903 MsG0780036755.01.T01:intron 20.0%
!!! TTGTCAATTTGTGTATTTTT+AGG + Chr7:13232940-13232959 MsG0780036755.01.T01:intron 20.0%
!!! TTTCAGATTTTAAAAACAGT+TGG - Chr7:13233077-13233096 None:intergenic 20.0%
! AAAACTTGACAAATTTCCTT+TGG + Chr7:13234847-13234866 MsG0780036755.01.T01:CDS 25.0%
! AAACTTATAATCAAAACCTG+TGG + Chr7:13234188-13234207 MsG0780036755.01.T01:CDS 25.0%
! AACTTATAATCAAAACCTGT+GGG + Chr7:13234189-13234208 MsG0780036755.01.T01:CDS 25.0%
! AAGGAGATATATTAGTACTT+CGG + Chr7:13235025-13235044 MsG0780036755.01.T01:exon 25.0%
! AAGTAAATCATGAAGGATAT+TGG - Chr7:13233393-13233412 None:intergenic 25.0%
! ACAATGTTGACATTAATCAA+AGG - Chr7:13233697-13233716 None:intergenic 25.0%
! ATAAATGAATAAGCTTGACT+CGG - Chr7:13234162-13234181 None:intergenic 25.0%
! CAAAAGCTCAAATTTATTCA+AGG - Chr7:13235181-13235200 None:intergenic 25.0%
! CAAAGGCTCAAATTTATTTA+AGG - Chr7:13235090-13235109 None:intergenic 25.0%
! CATTGTAAGATTGATTGATT+TGG + Chr7:13233711-13233730 MsG0780036755.01.T01:intron 25.0%
! CTATGAATAAAAATATCACC+CGG + Chr7:13233258-13233277 MsG0780036755.01.T01:intron 25.0%
! TAATGAAATGATACCATTTG+AGG + Chr7:13233015-13233034 MsG0780036755.01.T01:intron 25.0%
!! AAATCACATATGTCAGATTT+TGG - Chr7:13234611-13234630 None:intergenic 25.0%
!!! ATTTTGTTGTTTGTAGAGAA+AGG - Chr7:13233912-13233931 None:intergenic 25.0%
!!! TATTTTTGGGTTTGACATTT+TGG + Chr7:13233473-13233492 MsG0780036755.01.T01:intron 25.0%
!!! TTTGGTTTATTCATTTTTCC+AGG + Chr7:13233491-13233510 MsG0780036755.01.T01:intron 25.0%
AATAAAAATATCACCCGGAT+TGG + Chr7:13233263-13233282 MsG0780036755.01.T01:intron 30.0%
AATCATGAAGGATATTGGAA+TGG - Chr7:13233388-13233407 None:intergenic 30.0%
ACTGTTTATTTCCAACATTG+AGG + Chr7:13233153-13233172 MsG0780036755.01.T01:intron 30.0%
ATGCTGATAAGTCACAAATT+TGG + Chr7:13234420-13234439 MsG0780036755.01.T01:CDS 30.0%
ATTAGATAGTGAGTCAACAA+TGG - Chr7:13234114-13234133 None:intergenic 30.0%
CAGAGAATCAAGAAAAATTG+AGG - Chr7:13232678-13232697 None:intergenic 30.0%
CTCACTATCTAATGATTATG+TGG + Chr7:13234121-13234140 MsG0780036755.01.T01:CDS 30.0%
GAAATTACGTTTGAGTAATC+AGG - Chr7:13233657-13233676 None:intergenic 30.0%
GTTAACAAAAACACTATTCG+CGG + Chr7:13233184-13233203 MsG0780036755.01.T01:intron 30.0%
TACTTACAGTTTGTACACAT+TGG - Chr7:13232858-13232877 None:intergenic 30.0%
TGCATTGAAATCATGATTTC+TGG - Chr7:13233445-13233464 None:intergenic 30.0%
TTAACAAAAACACTATTCGC+GGG + Chr7:13233185-13233204 MsG0780036755.01.T01:intron 30.0%
TTCCACAAAAATTCCTCAAA+TGG - Chr7:13233031-13233050 None:intergenic 30.0%
! AAATTTCCTTTGGAGGTTAA+AGG + Chr7:13234857-13234876 MsG0780036755.01.T01:CDS 30.0%
! GAAATCTAGAATCTTCAGAT+CGG + Chr7:13232829-13232848 MsG0780036755.01.T01:five_prime_UTR 30.0%
! TACCATTTGAGGAATTTTTG+TGG + Chr7:13233026-13233045 MsG0780036755.01.T01:intron 30.0%
! TCTAGATAAAGAAAAGGCAT+CGG + Chr7:13234517-13234536 MsG0780036755.01.T01:CDS 30.0%
! TTTTCTCCTTTGATTCAAGA+TGG + Chr7:13233935-13233954 MsG0780036755.01.T01:exon 30.0%
!! TTATTGATTCGCTTTCACAA+AGG - Chr7:13235107-13235126 None:intergenic 30.0%
!!! AAACCATCCTGAGATTTTTT+GGG + Chr7:13233781-13233800 MsG0780036755.01.T01:five_prime_UTR 30.0%
!!! ATGATTTCTGGCTACTTTTT+GGG - Chr7:13233433-13233452 None:intergenic 30.0%
!!! TGTTTTAGGACGAAGAAATA+TGG + Chr7:13232973-13232992 MsG0780036755.01.T01:intron 30.0%
AAAAATCTCAGGATGGTTTG+CGG - Chr7:13233780-13233799 None:intergenic 35.0%
AAATCTCTGAACGAACTTGT+TGG + Chr7:13234758-13234777 MsG0780036755.01.T01:CDS 35.0%
AACAACACATACCTCAATGT+TGG - Chr7:13233167-13233186 None:intergenic 35.0%
ACTTGACAAATTTCCTTTGG+AGG + Chr7:13234850-13234869 MsG0780036755.01.T01:CDS 35.0%
ATAACTGAATCCATCTTCTG+GGG - Chr7:13234702-13234721 None:intergenic 35.0%
ATCACAACCCAAAAAATCTC+AGG - Chr7:13233791-13233810 None:intergenic 35.0%
ATTGAAGACATTCGACCTAA+CGG + Chr7:13233609-13233628 MsG0780036755.01.T01:five_prime_UTR 35.0%
CATAACTGAATCCATCTTCT+GGG - Chr7:13234703-13234722 None:intergenic 35.0%
CATCATTTCGAACAAAGGTA+CGG - Chr7:13234940-13234959 None:intergenic 35.0%
GAAGGATATTGGAATGGAAT+TGG - Chr7:13233382-13233401 None:intergenic 35.0%
GCATTGCACATTGATACAAA+TGG + Chr7:13234821-13234840 MsG0780036755.01.T01:CDS 35.0%
GTGGAAAAGCGGTTAATTAA+TGG + Chr7:13233045-13233064 MsG0780036755.01.T01:intron 35.0%
GTTTCAGAATCTCGTCAATT+TGG - Chr7:13234079-13234098 None:intergenic 35.0%
TACTCAATGAACGGAATTGA+AGG + Chr7:13234650-13234669 MsG0780036755.01.T01:CDS 35.0%
TCTTAACATTGCTGTGAAGT+CGG + Chr7:13234262-13234281 MsG0780036755.01.T01:CDS 35.0%
TGAAGAAAAAGCAAAGAGGA+GGG - Chr7:13233879-13233898 None:intergenic 35.0%
TGGGTTGTGATATAGTTCTT+AGG + Chr7:13233800-13233819 MsG0780036755.01.T01:five_prime_UTR 35.0%
TTGAAGAAAAAGCAAAGAGG+AGG - Chr7:13233880-13233899 None:intergenic 35.0%
TTGTATCCTTTAACCTCCAA+AGG - Chr7:13234866-13234885 None:intergenic 35.0%
TTTGTAGAGAAAGGAAAGCA+GGG - Chr7:13233903-13233922 None:intergenic 35.0%
! AATGAAGTACTTGGTGAAGA+TGG + Chr7:13234902-13234921 MsG0780036755.01.T01:CDS 35.0%
! AATTTTTCTACTCCACCGTT+AGG - Chr7:13233627-13233646 None:intergenic 35.0%
! ATTTTGAATTTGAACCCTGC+GGG + Chr7:13234627-13234646 MsG0780036755.01.T01:CDS 35.0%
! GAGGAATTTTTGTGGAAAAG+CGG + Chr7:13233034-13233053 MsG0780036755.01.T01:intron 35.0%
! GATTTTGAATTTGAACCCTG+CGG + Chr7:13234626-13234645 MsG0780036755.01.T01:CDS 35.0%
! GGTTTGATGACTAAGAATTC+TGG + Chr7:13234569-13234588 MsG0780036755.01.T01:CDS 35.0%
!! AATGAGGTAATGGAGTCAAA+AGG + Chr7:13233522-13233541 MsG0780036755.01.T01:five_prime_UTR 35.0%
!! GACTGGTCTAGATAAAGAAA+AGG + Chr7:13234511-13234530 MsG0780036755.01.T01:CDS 35.0%
!! TGACTAAGAATTCTGGAATC+AGG + Chr7:13234576-13234595 MsG0780036755.01.T01:CDS 35.0%
!!! CAAACCATCCTGAGATTTTT+TGG + Chr7:13233780-13233799 MsG0780036755.01.T01:five_prime_UTR 35.0%
!!! CATGATTTCTGGCTACTTTT+TGG - Chr7:13233434-13233453 None:intergenic 35.0%
!!! GTTTTGAAGGCTATGAAAAG+AGG + Chr7:13233979-13233998 MsG0780036755.01.T01:CDS 35.0%
AATCTCGTCAATTTGGTCTC+TGG - Chr7:13234072-13234091 None:intergenic 40.0%
AATGCAACAGAAAACTCAGC+TGG - Chr7:13234806-13234825 None:intergenic 40.0%
ACCATCAGCAAGCTTAAGAA+TGG - Chr7:13234243-13234262 None:intergenic 40.0%
CAACATTTCAGAGTAGACCT+TGG - Chr7:13234974-13234993 None:intergenic 40.0%
CAACCCAAAAAATCTCAGGA+TGG - Chr7:13233787-13233806 None:intergenic 40.0%
CGTACCTTTGTTCGAAATGA+TGG + Chr7:13234938-13234957 MsG0780036755.01.T01:CDS 40.0%
GAGGTTAAAGGATACAACTG+TGG + Chr7:13234869-13234888 MsG0780036755.01.T01:CDS 40.0%
GCATAACTGAATCCATCTTC+TGG - Chr7:13234704-13234723 None:intergenic 40.0%
GGGTTGAAGAAAAAGCAAAG+AGG - Chr7:13233883-13233902 None:intergenic 40.0%
GTCTTCAATGATGTATCCGA+GGG - Chr7:13233598-13233617 None:intergenic 40.0%
GTTTGTAGAGAAAGGAAAGC+AGG - Chr7:13233904-13233923 None:intergenic 40.0%
TCATGGCCATCTTGAATCAA+AGG - Chr7:13233944-13233963 None:intergenic 40.0%
TCTTCAATGATGTATCCGAG+GGG - Chr7:13233597-13233616 None:intergenic 40.0%
TCTTCGTTCTTTCTTTCCGT+TGG + Chr7:13232640-13232659 MsG0780036755.01.T01:five_prime_UTR 40.0%
TGTCTTCAATGATGTATCCG+AGG - Chr7:13233599-13233618 None:intergenic 40.0%
TTACCTCATTCACACTTTCC+TGG - Chr7:13233512-13233531 None:intergenic 40.0%
! AAAATCTCAGGATGGTTTGC+GGG - Chr7:13233779-13233798 None:intergenic 40.0%
! GAGAGGATCAATGAAGTACT+TGG + Chr7:13234893-13234912 MsG0780036755.01.T01:CDS 40.0%
! GCTGTTCTTGACAGCTATTT+TGG + Chr7:13234359-13234378 MsG0780036755.01.T01:CDS 40.0%
! GGAAAGTGTGAATGAGGTAA+TGG + Chr7:13233512-13233531 MsG0780036755.01.T01:intron 40.0%
! TTTCCAGGAAAGTGTGAATG+AGG + Chr7:13233506-13233525 MsG0780036755.01.T01:intron 40.0%
!! TATGCAAGCTTTGAAGCAGT+AGG + Chr7:13234719-13234738 MsG0780036755.01.T01:CDS 40.0%
!! TCTGAACGAACTTGTTGGAA+GGG + Chr7:13234763-13234782 MsG0780036755.01.T01:CDS 40.0%
!!! AACTCAGCTATCGGTTTTGA+AGG + Chr7:13233966-13233985 MsG0780036755.01.T01:CDS 40.0%
!!! GACAGCTATTTTGGCAAACT+GGG + Chr7:13234368-13234387 MsG0780036755.01.T01:CDS 40.0%
!!! TATTTTGGCAAACTGGGTTC+CGG + Chr7:13234374-13234393 MsG0780036755.01.T01:CDS 40.0%
!!! TGACAGCTATTTTGGCAAAC+TGG + Chr7:13234367-13234386 MsG0780036755.01.T01:CDS 40.0%
AAGACAGATGCATCTTCAGC+AGG + Chr7:13234548-13234567 MsG0780036755.01.T01:CDS 45.0%
AAGGATACAACTGTGGAGAG+AGG + Chr7:13234876-13234895 MsG0780036755.01.T01:CDS 45.0%
ACCGATAGCTGAGTTTGTCA+TGG - Chr7:13233961-13233980 None:intergenic 45.0%
AGAAAAAGCAAAGAGGAGGG+AGG - Chr7:13233876-13233895 None:intergenic 45.0%
AGGGATTGACAGAAGCAACT+TGG - Chr7:13234219-13234238 None:intergenic 45.0%
ATAGCAGCTATGCACCAATC+CGG - Chr7:13233280-13233299 None:intergenic 45.0%
CAGCAAGCTTAAGAATGGCA+GGG - Chr7:13234238-13234257 None:intergenic 45.0%
CATCACCCATCATGTAAGCT+TGG - Chr7:13234403-13234422 None:intergenic 45.0%
CATCATGTAAGCTTGGCTAC+CGG - Chr7:13234396-13234415 None:intergenic 45.0%
CCAGGTACAACACTCACATA+TGG - Chr7:13235265-13235284 None:intergenic 45.0%
GACCAGTCATGCACATTTCA+AGG - Chr7:13234499-13234518 None:intergenic 45.0%
GAGGAGCGAAAGAAAACCAA+CGG - Chr7:13232659-13232678 None:intergenic 45.0%
GCAGCCATCATTTCGAACAA+AGG - Chr7:13234945-13234964 None:intergenic 45.0%
GCCATGACAAACTCAGCTAT+CGG + Chr7:13233957-13233976 MsG0780036755.01.T01:CDS 45.0%
GGTAGCCAAGCTTACATGAT+GGG + Chr7:13234395-13234414 MsG0780036755.01.T01:CDS 45.0%
GTCAAGAACAGCAACTTCCT+CGG - Chr7:13234351-13234370 None:intergenic 45.0%
TCAACAATGGTGCATTCTGC+TGG - Chr7:13234101-13234120 None:intergenic 45.0%
TCAGCAAGCTTAAGAATGGC+AGG - Chr7:13234239-13234258 None:intergenic 45.0%
TGCTAAGCTAGAAGCTTCAC+CGG + Chr7:13234460-13234479 MsG0780036755.01.T01:CDS 45.0%
TTTGGTCTCTGGACAATGCT+CGG - Chr7:13234061-13234080 None:intergenic 45.0%
! CCATATGTGAGTGTTGTACC+TGG + Chr7:13235262-13235281 MsG0780036755.01.T01:three_prime_UTR 45.0%
! TCTGAAATGTTGCTGGAGTG+AGG + Chr7:13234982-13235001 MsG0780036755.01.T01:CDS 45.0%
! TTTTTGTACGAAGCTCCCCT+CGG + Chr7:13233579-13233598 MsG0780036755.01.T01:five_prime_UTR 45.0%
!! CTCTGAACGAACTTGTTGGA+AGG + Chr7:13234762-13234781 MsG0780036755.01.T01:CDS 45.0%
!! GAGGTAATGGAGTCAAAAGG+TGG + Chr7:13233525-13233544 MsG0780036755.01.T01:five_prime_UTR 45.0%
!! GCCATTCTTAAGCTTGCTGA+TGG + Chr7:13234239-13234258 MsG0780036755.01.T01:CDS 45.0%
!! GGTCTACTCTGAAATGTTGC+TGG + Chr7:13234975-13234994 MsG0780036755.01.T01:CDS 45.0%
AAGTCGGTGAGATACACTCG+CGG + Chr7:13234278-13234297 MsG0780036755.01.T01:CDS 50.0%
ATCCATGTCACCCCAGAAGA+TGG + Chr7:13234689-13234708 MsG0780036755.01.T01:CDS 50.0%
ATGATGGCTGCACATCTCCA+AGG + Chr7:13234954-13234973 MsG0780036755.01.T01:CDS 50.0%
CCTCGGAAAAGCTACGATGA+GGG - Chr7:13234334-13234353 None:intergenic 50.0%
CGGTAGCCAAGCTTACATGA+TGG + Chr7:13234394-13234413 MsG0780036755.01.T01:CDS 50.0%
GAAGACATTCGACCTAACGG+TGG + Chr7:13233612-13233631 MsG0780036755.01.T01:five_prime_UTR 50.0%
GAGGAGGGAGGACAAGAAAA+AGG - Chr7:13233864-13233883 None:intergenic 50.0%
GAGGGAATGATTGAGCTCCA+GGG - Chr7:13234316-13234335 None:intergenic 50.0%
GAGGGGAGCTTCGTACAAAA+AGG - Chr7:13233580-13233599 None:intergenic 50.0%
GGCCTTGAAATGTGCATGAC+TGG + Chr7:13234494-13234513 MsG0780036755.01.T01:CDS 50.0%
GGGAGCTTCGTACAAAAAGG+AGG - Chr7:13233577-13233596 None:intergenic 50.0%
GGGAGGACAAGAAAAAGGAG+AGG - Chr7:13233859-13233878 None:intergenic 50.0%
TAGCAGCTATGCACCAATCC+GGG - Chr7:13233279-13233298 None:intergenic 50.0%
TCAAGGCCATAGACAGCTTC+CGG - Chr7:13234482-13234501 None:intergenic 50.0%
TCCTCGGAAAAGCTACGATG+AGG - Chr7:13234335-13234354 None:intergenic 50.0%
TGAGAACGAGGAGGAAGTGA+AGG + Chr7:13235006-13235025 MsG0780036755.01.T01:CDS 50.0%
TGAGGGAATGATTGAGCTCC+AGG - Chr7:13234317-13234336 None:intergenic 50.0%
! AAGCAACTTGGTAGTCCCAC+AGG - Chr7:13234207-13234226 None:intergenic 50.0%
! GGAGTTTTCTCTGATCCTGC+CGG + Chr7:13234026-13234045 MsG0780036755.01.T01:CDS 50.0%
!! ATCCATCTTCTGGGGTGACA+TGG - Chr7:13234694-13234713 None:intergenic 50.0%
!! TTCTGGGGTGACATGGATAG+TGG - Chr7:13234687-13234706 None:intergenic 50.0%
CCCTGCGGGTACTCAATGAA+CGG + Chr7:13234641-13234660 MsG0780036755.01.T01:CDS 55.0%
CCGTTCATTGAGTACCCGCA+GGG - Chr7:13234644-13234663 None:intergenic 55.0%
CTGGAGTGAGGATGAGAACG+AGG + Chr7:13234994-13235013 MsG0780036755.01.T01:CDS 55.0%
GAGTGAGGATGAGAACGAGG+AGG + Chr7:13234997-13235016 MsG0780036755.01.T01:CDS 55.0%
GCTTCACCGGAAGCTGTCTA+TGG + Chr7:13234473-13234492 MsG0780036755.01.T01:CDS 55.0%
TCCGTTCATTGAGTACCCGC+AGG - Chr7:13234645-13234664 None:intergenic 55.0%
TTCTCTGATCCTGCCGGACA+AGG + Chr7:13234032-13234051 MsG0780036755.01.T01:CDS 55.0%
! CCCTCATCGTAGCTTTTCCG+AGG + Chr7:13234331-13234350 MsG0780036755.01.T01:CDS 55.0%
! CGCGGAAGCTTCATTTTCCC+TGG + Chr7:13234296-13234315 MsG0780036755.01.T01:CDS 55.0%
GGTCTCTGGACAATGCTCGG+AGG - Chr7:13234058-13234077 None:intergenic 60.0%
! CAATGCTCGGAGGCCTTGTC+CGG - Chr7:13234048-13234067 None:intergenic 60.0%
! GCTCGGAGGCCTTGTCCGGC+AGG - Chr7:13234044-13234063 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 13232603 13235315 13232603 ID=MsG0780036755.01;Name=MsG0780036755.01
Chr7 mRNA 13232603 13235315 13232603 ID=MsG0780036755.01.T01;Parent=MsG0780036755.01;Name=MsG0780036755.01.T01;_AED=0.46;_eAED=0.46;_QI=505|1|1|1|0|0|5|247|361
Chr7 exon 13232603 13232696 13232603 ID=MsG0780036755.01.T01:exon:2700;Parent=MsG0780036755.01.T01
Chr7 exon 13232798 13232870 13232798 ID=MsG0780036755.01.T01:exon:2701;Parent=MsG0780036755.01.T01
Chr7 exon 13233513 13233668 13233513 ID=MsG0780036755.01.T01:exon:2702;Parent=MsG0780036755.01.T01
Chr7 exon 13233772 13235142 13233772 ID=MsG0780036755.01.T01:exon:2703;Parent=MsG0780036755.01.T01
Chr7 exon 13235172 13235315 13235172 ID=MsG0780036755.01.T01:exon:2704;Parent=MsG0780036755.01.T01
Chr7 five_prime_UTR 13232603 13232696 13232603 ID=MsG0780036755.01.T01:five_prime_utr;Parent=MsG0780036755.01.T01
Chr7 five_prime_UTR 13232798 13232870 13232798 ID=MsG0780036755.01.T01:five_prime_utr;Parent=MsG0780036755.01.T01
Chr7 five_prime_UTR 13233513 13233668 13233513 ID=MsG0780036755.01.T01:five_prime_utr;Parent=MsG0780036755.01.T01
Chr7 five_prime_UTR 13233772 13233953 13233772 ID=MsG0780036755.01.T01:five_prime_utr;Parent=MsG0780036755.01.T01
Chr7 CDS 13233954 13235039 13233954 ID=MsG0780036755.01.T01:cds;Parent=MsG0780036755.01.T01
Chr7 three_prime_UTR 13235040 13235142 13235040 ID=MsG0780036755.01.T01:three_prime_utr;Parent=MsG0780036755.01.T01
Chr7 three_prime_UTR 13235172 13235315 13235172 ID=MsG0780036755.01.T01:three_prime_utr;Parent=MsG0780036755.01.T01
Gene Sequence

>MsG0780036755.01.T01

ATGGCCATGACAAACTCAGCTATCGGTTTTGAAGGCTATGAAAAGAGGATTGAGATAACTTTTTTTGAAAATGGAGTTTTCTCTGATCCTGCCGGACAAGGCCTCCGAGCATTGTCCAGAGACCAAATTGACGAGATTCTGAAACCAGCAGAATGCACCATTGTTGACTCACTATCTAATGATTATGTGGATTCATATGTTCTTTCCGAGTCAAGCTTATTCATTTATGCTTACAAACTTATAATCAAAACCTGTGGGACTACCAAGTTGCTTCTGTCAATCCCTGCCATTCTTAAGCTTGCTGATGGTCTTAACATTGCTGTGAAGTCGGTGAGATACACTCGCGGAAGCTTCATTTTCCCTGGAGCTCAATCATTCCCTCATCGTAGCTTTTCCGAGGAAGTTGCTGTTCTTGACAGCTATTTTGGCAAACTGGGTTCCGGTAGCCAAGCTTACATGATGGGTGATGCTGATAAGTCACAAATTTGGCACATTTACTCTGCTAGTGCTAAGCTAGAAGCTTCACCGGAAGCTGTCTATGGCCTTGAAATGTGCATGACTGGTCTAGATAAAGAAAAGGCATCGGTCTTTTTCAAGACAGATGCATCTTCAGCAGGTTTGATGACTAAGAATTCTGGAATCAGGAAGATCATTCCAAAATCTGACATATGTGATTTTGAATTTGAACCCTGCGGGTACTCAATGAACGGAATTGAAGGAAGTGCAATATCCACTATCCATGTCACCCCAGAAGATGGATTCAGTTATGCAAGCTTTGAAGCAGTAGGTTATAACTTTGAAGAGAAATCTCTGAACGAACTTGTTGGAAGGGTTTTAGCATGTTTCTATCCAGCTGAGTTTTCTGTTGCATTGCACATTGATACAAATGGTGAAAAACTTGACAAATTTCCTTTGGAGGTTAAAGGATACAACTGTGGAGAGAGGATCAATGAAGTACTTGGTGAAGATGGTGCAGTCGTGTACCGTACCTTTGTTCGAAATGATGGCTGCACATCTCCAAGGTCTACTCTGAAATGTTGCTGGAGTGAGGATGAGAACGAGGAGGAAGTGAAGGAGATATATTAG
Protein sequence

>MsG0780036755.01.T01

MAMTNSAIGFEGYEKRIEITFFENGVFSDPAGQGLRALSRDQIDEILKPAECTIVDSLSNDYVDSYVLSESSLFIYAYKLIIKTCGTTKLLLSIPAILKLADGLNIAVKSVRYTRGSFIFPGAQSFPHRSFSEEVAVLDSYFGKLGSGSQAYMMGDADKSQIWHIYSASAKLEASPEAVYGLEMCMTGLDKEKASVFFKTDASSAGLMTKNSGIRKIIPKSDICDFEFEPCGYSMNGIEGSAISTIHVTPEDGFSYASFEAVGYNFEEKSLNELVGRVLACFYPAEFSVALHIDTNGEKLDKFPLEVKGYNCGERINEVLGEDGAVVYRTFVRNDGCTSPRSTLKCCWSEDENEEEVKEIY*