Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006108.01.T01 | XP_004497247.1 | 83.636 | 220 | 35 | 1 | 1 | 220 | 1 | 219 | 2.29E-134 | 386 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006108.01.T01 | Q9FMW4 | 59 | 200 | 81 | 1 | 16 | 215 | 18 | 216 | 6.28E-79 | 238 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006108.01.T01 | A0A1S2Y1F9 | 83.636 | 220 | 35 | 1 | 1 | 220 | 1 | 219 | 1.09e-134 | 386 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180000567.01 | MsG0180006108.01 | 0.811211 | 7.843603e-51 | 4.826264e-48 |
MsG0180006108.01 | MsG0580024249.01 | 0.814227 | 1.715648e-51 | 1.144594e-48 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0580024247.01 | MsG0180006108.01 | PPI |
MsG0180006108.01 | MsG0580024247.01 | PPI |
MsG0180006110.01 | MsG0180006108.01 | PPI |
MsG0580024249.01 | MsG0180006108.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006108.01.T01 | MTR_1g114640 | 83.105 | 219 | 29 | 2 | 1 | 212 | 1 | 218 | 2.32e-131 | 369 |
MsG0180006108.01.T01 | MTR_1g033750 | 63.636 | 220 | 71 | 3 | 5 | 215 | 4 | 223 | 7.66e-95 | 276 |
MsG0180006108.01.T01 | MTR_1g114640 | 80.723 | 166 | 24 | 2 | 1 | 159 | 1 | 165 | 1.82e-90 | 263 |
MsG0180006108.01.T01 | MTR_1g114690 | 53.070 | 228 | 84 | 3 | 1 | 215 | 1 | 218 | 3.37e-77 | 231 |
MsG0180006108.01.T01 | MTR_1g114690 | 51.982 | 227 | 86 | 3 | 1 | 214 | 1 | 217 | 5.11e-75 | 226 |
MsG0180006108.01.T01 | MTR_1g114750 | 48.214 | 224 | 104 | 2 | 1 | 215 | 1 | 221 | 1.46e-70 | 215 |
MsG0180006108.01.T01 | MTR_1g114690 | 46.565 | 262 | 83 | 4 | 1 | 215 | 1 | 252 | 5.31e-70 | 214 |
MsG0180006108.01.T01 | MTR_1g114680 | 93.103 | 116 | 8 | 0 | 105 | 220 | 53 | 168 | 2.33e-68 | 208 |
MsG0180006108.01.T01 | MTR_8g100065 | 58.896 | 163 | 66 | 1 | 54 | 215 | 23 | 185 | 4.48e-63 | 194 |
MsG0180006108.01.T01 | MTR_6g077990 | 55.625 | 160 | 71 | 0 | 58 | 217 | 42 | 201 | 1.08e-62 | 194 |
MsG0180006108.01.T01 | MTR_6g077990 | 52.000 | 175 | 84 | 0 | 43 | 217 | 26 | 200 | 1.09e-62 | 194 |
MsG0180006108.01.T01 | MTR_1g115130 | 60.000 | 150 | 60 | 0 | 67 | 216 | 46 | 195 | 1.29e-62 | 194 |
MsG0180006108.01.T01 | MTR_8g100065 | 58.896 | 163 | 66 | 1 | 54 | 215 | 45 | 207 | 1.71e-62 | 194 |
MsG0180006108.01.T01 | MTR_6g077990 | 55.629 | 151 | 67 | 0 | 67 | 217 | 8 | 158 | 1.61e-58 | 182 |
MsG0180006108.01.T01 | MTR_1g114690 | 50.867 | 173 | 62 | 3 | 1 | 160 | 1 | 163 | 2.45e-48 | 157 |
MsG0180006108.01.T01 | MTR_7g083570 | 35.052 | 194 | 126 | 0 | 20 | 213 | 82 | 275 | 4.52e-43 | 147 |
MsG0180006108.01.T01 | MTR_3g100750 | 32.212 | 208 | 130 | 2 | 15 | 212 | 49 | 255 | 8.36e-42 | 142 |
MsG0180006108.01.T01 | MTR_8g069110 | 35.359 | 181 | 106 | 2 | 42 | 212 | 88 | 267 | 4.81e-41 | 141 |
MsG0180006108.01.T01 | MTR_6g077990 | 51.240 | 121 | 59 | 0 | 43 | 163 | 26 | 146 | 3.61e-39 | 132 |
MsG0180006108.01.T01 | MTR_8g100065 | 59.813 | 107 | 42 | 1 | 54 | 159 | 23 | 129 | 1.26e-38 | 130 |
MsG0180006108.01.T01 | MTR_8g100065 | 59.813 | 107 | 42 | 1 | 54 | 159 | 45 | 151 | 4.26e-38 | 130 |
MsG0180006108.01.T01 | MTR_2g076350 | 33.491 | 212 | 134 | 3 | 6 | 214 | 20 | 227 | 1.60e-33 | 120 |
MsG0180006108.01.T01 | MTR_5g015750 | 76.712 | 73 | 9 | 2 | 1 | 66 | 1 | 72 | 7.92e-31 | 110 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180006108.01.T01 | AT5G23370 | 59.000 | 200 | 81 | 1 | 16 | 215 | 18 | 216 | 6.40e-80 | 238 |
MsG0180006108.01.T01 | AT5G08350 | 57.000 | 200 | 74 | 3 | 21 | 215 | 23 | 215 | 3.94e-76 | 229 |
MsG0180006108.01.T01 | AT5G23350 | 55.072 | 207 | 82 | 3 | 16 | 217 | 18 | 218 | 4.17e-75 | 226 |
MsG0180006108.01.T01 | AT5G23360 | 59.756 | 164 | 66 | 0 | 54 | 217 | 47 | 210 | 1.06e-72 | 220 |
MsG0180006108.01.T01 | AT4G01600 | 40.909 | 176 | 103 | 1 | 42 | 216 | 14 | 189 | 5.18e-48 | 156 |
MsG0180006108.01.T01 | AT4G01600 | 40.909 | 176 | 103 | 1 | 42 | 216 | 53 | 228 | 1.65e-47 | 156 |
MsG0180006108.01.T01 | AT5G13200 | 36.170 | 188 | 120 | 0 | 29 | 216 | 77 | 264 | 3.06e-44 | 149 |
MsG0180006108.01.T01 | AT4G01600 | 43.709 | 151 | 84 | 1 | 67 | 216 | 73 | 223 | 5.27e-43 | 145 |
MsG0180006108.01.T01 | AT1G28200 | 35.678 | 199 | 116 | 4 | 22 | 212 | 60 | 254 | 6.37e-42 | 143 |
MsG0180006108.01.T01 | AT1G28200 | 35.678 | 199 | 116 | 4 | 22 | 212 | 60 | 254 | 6.37e-42 | 143 |
MsG0180006108.01.T01 | AT2G22475 | 35.079 | 191 | 121 | 2 | 23 | 212 | 103 | 291 | 8.02e-42 | 144 |
MsG0180006108.01.T01 | AT5G13200 | 33.333 | 132 | 88 | 0 | 29 | 160 | 77 | 208 | 2.16e-25 | 99.0 |
MsG0180006108.01.T01 | AT4G40100 | 27.368 | 190 | 103 | 2 | 23 | 212 | 62 | 216 | 4.64e-22 | 90.5 |
MsG0180006108.01.T01 | AT2G22475 | 31.757 | 148 | 98 | 2 | 23 | 169 | 103 | 248 | 6.80e-22 | 90.5 |
Find 42 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTTTCGACTTCTGGTTTA+TGG | 0.139805 | 1:-100242083 | MsG0180006108.01.T01:CDS |
TTTCTTCATGAGTTACTTAA+TGG | 0.146739 | 1:-100242876 | MsG0180006108.01.T01:CDS |
CTATGGATGGTTTCGACTTC+TGG | 0.198951 | 1:-100242090 | MsG0180006108.01.T01:CDS |
AAGATAACAGATACAGTAAA+AGG | 0.228633 | 1:-100242436 | MsG0180006108.01.T01:CDS |
TTTACTGTATCTGTTATCTT+TGG | 0.247894 | 1:+100242439 | None:intergenic |
GGTTTCGACTTCTGGTTTAT+GGG | 0.291409 | 1:-100242082 | MsG0180006108.01.T01:CDS |
GTTGGGAGCCAGAATTCTTC+AGG | 0.336328 | 1:-100242404 | MsG0180006108.01.T01:CDS |
CCCGCCAACCTGAAGAATTC+TGG | 0.351542 | 1:+100242396 | None:intergenic |
GATGAACATGTTTGGAAGAA+AGG | 0.373892 | 1:-100242657 | MsG0180006108.01.T01:CDS |
ATTCATTAGAGTTCACTATA+AGG | 0.401080 | 1:-100242197 | MsG0180006108.01.T01:CDS |
TATCTGCCAGCTGATTCTTC+TGG | 0.418036 | 1:-100242828 | MsG0180006108.01.T01:CDS |
ATGACTAAGATGAACATGTT+TGG | 0.423883 | 1:-100242665 | MsG0180006108.01.T01:CDS |
ATGAACATGTTTGGAAGAAA+GGG | 0.430526 | 1:-100242656 | MsG0180006108.01.T01:CDS |
ATACATAGAAATAGTCACTA+TGG | 0.430727 | 1:-100242107 | MsG0180006108.01.T01:CDS |
CCAGAATTCTTCAGGTTGGC+GGG | 0.441065 | 1:-100242396 | MsG0180006108.01.T01:CDS |
GCCAGAATTCTTCAGGTTGG+CGG | 0.449134 | 1:-100242397 | MsG0180006108.01.T01:CDS |
CTCTAAATCTCAGAGGGAAA+AGG | 0.451562 | 1:-100242014 | MsG0180006108.01.T01:CDS |
ATCAAAATTTCTTCCTCGAA+TGG | 0.453468 | 1:-100242223 | MsG0180006108.01.T01:CDS |
ACCTTGCTTTGACTTTGTGA+TGG | 0.474385 | 1:+100242791 | None:intergenic |
TCTAATGAATTCTCCATTCG+AGG | 0.480167 | 1:+100242210 | None:intergenic |
ATGAAGAGAAGGCCAGCTAT+AGG | 0.493362 | 1:+100242283 | None:intergenic |
AGCTTTAAGATATCTTCAGC+AGG | 0.515990 | 1:-100242041 | MsG0180006108.01.T01:CDS |
AGTAAAAGGGAAACTGAGGT+TGG | 0.524536 | 1:-100242422 | MsG0180006108.01.T01:CDS |
TTGTAACCTGCAGTGAGACT+TGG | 0.527828 | 1:-100242463 | MsG0180006108.01.T01:intron |
ACCACGTCAGGTCCTATAGC+TGG | 0.538413 | 1:-100242295 | MsG0180006108.01.T01:CDS |
AGATAACAGATACAGTAAAA+GGG | 0.540258 | 1:-100242435 | MsG0180006108.01.T01:CDS |
GGAGCCAGAATTCTTCAGGT+TGG | 0.551383 | 1:-100242400 | MsG0180006108.01.T01:CDS |
GGCTATCTCTAAATCTCAGA+GGG | 0.564713 | 1:-100242020 | MsG0180006108.01.T01:CDS |
GCACATGGAGTCCGAGAGCA+TGG | 0.566367 | 1:-100242623 | MsG0180006108.01.T01:intron |
GTAAAAGGGAAACTGAGGTT+GGG | 0.569074 | 1:-100242421 | MsG0180006108.01.T01:CDS |
TGTTACTTATCAACCACGTC+AGG | 0.572611 | 1:-100242307 | MsG0180006108.01.T01:CDS |
ATAGAAATAGTCACTATGGA+TGG | 0.592517 | 1:-100242103 | MsG0180006108.01.T01:CDS |
TCCATCACAAAGTCAAAGCA+AGG | 0.594218 | 1:-100242792 | MsG0180006108.01.T01:intron |
AAGATTACATACCATGCTCT+CGG | 0.595383 | 1:+100242612 | None:intergenic |
ACAGAAAGCAACTTTGTGAG+TGG | 0.605272 | 1:+100242258 | None:intergenic |
TGTGAGTGGAAATGAAGAGA+AGG | 0.611200 | 1:+100242272 | None:intergenic |
CAGAATTCTTCAGGTTGGCG+GGG | 0.646633 | 1:-100242395 | MsG0180006108.01.T01:CDS |
TGGCAGATATCTCTTTGATG+AGG | 0.656890 | 1:+100242842 | None:intergenic |
ATACAGTAAAAGGGAAACTG+AGG | 0.664591 | 1:-100242426 | MsG0180006108.01.T01:CDS |
TATATGCCAGAAGAATCAGC+TGG | 0.671059 | 1:+100242822 | None:intergenic |
AGGCTATCTCTAAATCTCAG+AGG | 0.678214 | 1:-100242021 | MsG0180006108.01.T01:CDS |
GCCAGCTATAGGACCTGACG+TGG | 0.697419 | 1:+100242294 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTCTATGTATTTTTCTGA+TGG | + | Chr1:100242782-100242801 | None:intergenic | 20.0% |
!!! | TGAAATAATACAGTTTTGTT+AGG | + | Chr1:100242141-100242160 | None:intergenic | 20.0% |
! | AAGATAACAGATACAGTAAA+AGG | - | Chr1:100242461-100242480 | MsG0180006108.01.T01:intron | 25.0% |
! | AGATAACAGATACAGTAAAA+GGG | - | Chr1:100242462-100242481 | MsG0180006108.01.T01:intron | 25.0% |
! | ATACATAGAAATAGTCACTA+TGG | - | Chr1:100242790-100242809 | MsG0180006108.01.T01:intron | 25.0% |
! | ATTCATTAGAGTTCACTATA+AGG | - | Chr1:100242700-100242719 | MsG0180006108.01.T01:intron | 25.0% |
! | TAGAATGAAGTAGTAATTGA+TGG | - | Chr1:100242398-100242417 | MsG0180006108.01.T01:CDS | 25.0% |
! | TTTACTGTATCTGTTATCTT+TGG | + | Chr1:100242461-100242480 | None:intergenic | 25.0% |
! | TTTCTTCATGAGTTACTTAA+TGG | - | Chr1:100242021-100242040 | MsG0180006108.01.T01:CDS | 25.0% |
!! | ATGATGCATCATACATATTT+TGG | + | Chr1:100242354-100242373 | None:intergenic | 25.0% |
!! | ATGATGCATCATTTGAAATT+TGG | - | Chr1:100242362-100242381 | MsG0180006108.01.T01:CDS | 25.0% |
!! | CATTTGAAATTTGGAATGAT+TGG | - | Chr1:100242371-100242390 | MsG0180006108.01.T01:CDS | 25.0% |
!! | TTTAATGTCATTGATGATCA+TGG | - | Chr1:100242175-100242194 | MsG0180006108.01.T01:CDS | 25.0% |
!!! | ACTTGTTGTATTTTTTCATG+TGG | + | Chr1:100242734-100242753 | None:intergenic | 25.0% |
!!! | GTTTCATCATATTTTGACTT+TGG | + | Chr1:100242760-100242779 | None:intergenic | 25.0% |
ATAGAAATAGTCACTATGGA+TGG | - | Chr1:100242794-100242813 | MsG0180006108.01.T01:CDS | 30.0% | |
ATCAAAATTTCTTCCTCGAA+TGG | - | Chr1:100242674-100242693 | MsG0180006108.01.T01:CDS | 30.0% | |
ATGAACATGTTTGGAAGAAA+GGG | - | Chr1:100242241-100242260 | MsG0180006108.01.T01:CDS | 30.0% | |
ATGACTAAGATGAACATGTT+TGG | - | Chr1:100242232-100242251 | MsG0180006108.01.T01:CDS | 30.0% | |
! | ATTCGAGGAAGAAATTTTGA+TGG | + | Chr1:100242675-100242694 | None:intergenic | 30.0% |
! | CATGGTCATTTCATATTTTC+AGG | - | Chr1:100242193-100242212 | MsG0180006108.01.T01:CDS | 30.0% |
AAGATTACATACCATGCTCT+CGG | + | Chr1:100242288-100242307 | None:intergenic | 35.0% | |
ATACAGTAAAAGGGAAACTG+AGG | - | Chr1:100242471-100242490 | MsG0180006108.01.T01:intron | 35.0% | |
GATGAACATGTTTGGAAGAA+AGG | - | Chr1:100242240-100242259 | MsG0180006108.01.T01:CDS | 35.0% | |
TCTAATGAATTCTCCATTCG+AGG | + | Chr1:100242690-100242709 | None:intergenic | 35.0% | |
!! | AGCTTTAAGATATCTTCAGC+AGG | - | Chr1:100242856-100242875 | MsG0180006108.01.T01:CDS | 35.0% |
ACAGAAAGCAACTTTGTGAG+TGG | + | Chr1:100242642-100242661 | None:intergenic | 40.0% | |
AGGCTATCTCTAAATCTCAG+AGG | - | Chr1:100242876-100242895 | MsG0180006108.01.T01:CDS | 40.0% | |
AGTAAAAGGGAAACTGAGGT+TGG | - | Chr1:100242475-100242494 | MsG0180006108.01.T01:intron | 40.0% | |
CACAAAGTCAAAGCAAGGTA+TGG | - | Chr1:100242110-100242129 | MsG0180006108.01.T01:CDS | 40.0% | |
CTCTAAATCTCAGAGGGAAA+AGG | - | Chr1:100242883-100242902 | MsG0180006108.01.T01:CDS | 40.0% | |
GGCTATCTCTAAATCTCAGA+GGG | - | Chr1:100242877-100242896 | MsG0180006108.01.T01:CDS | 40.0% | |
GTAAAAGGGAAACTGAGGTT+GGG | - | Chr1:100242476-100242495 | MsG0180006108.01.T01:intron | 40.0% | |
TATATGCCAGAAGAATCAGC+TGG | + | Chr1:100242078-100242097 | None:intergenic | 40.0% | |
TCCATCACAAAGTCAAAGCA+AGG | - | Chr1:100242105-100242124 | MsG0180006108.01.T01:CDS | 40.0% | |
TGGCAGATATCTCTTTGATG+AGG | + | Chr1:100242058-100242077 | None:intergenic | 40.0% | |
TGTGAGTGGAAATGAAGAGA+AGG | + | Chr1:100242628-100242647 | None:intergenic | 40.0% | |
! | ACCTTGCTTTGACTTTGTGA+TGG | + | Chr1:100242109-100242128 | None:intergenic | 40.0% |
! | GAGAGCATGGTATGTAATCT+TGG | - | Chr1:100242287-100242306 | MsG0180006108.01.T01:CDS | 40.0% |
! | TGTTACTTATCAACCACGTC+AGG | - | Chr1:100242590-100242609 | MsG0180006108.01.T01:intron | 40.0% |
!! | GGTTTCGACTTCTGGTTTAT+GGG | - | Chr1:100242815-100242834 | MsG0180006108.01.T01:CDS | 40.0% |
!! | TGGTTTCGACTTCTGGTTTA+TGG | - | Chr1:100242814-100242833 | MsG0180006108.01.T01:CDS | 40.0% |
ATGAAGAGAAGGCCAGCTAT+AGG | + | Chr1:100242617-100242636 | None:intergenic | 45.0% | |
CTATGGATGGTTTCGACTTC+TGG | - | Chr1:100242807-100242826 | MsG0180006108.01.T01:CDS | 45.0% | |
TTGTAACCTGCAGTGAGACT+TGG | - | Chr1:100242434-100242453 | MsG0180006108.01.T01:CDS | 45.0% | |
! | AAGGGTGACAGTTTTGCACA+TGG | - | Chr1:100242259-100242278 | MsG0180006108.01.T01:CDS | 45.0% |
! | TATCTGCCAGCTGATTCTTC+TGG | - | Chr1:100242069-100242088 | MsG0180006108.01.T01:CDS | 45.0% |
GGAGCCAGAATTCTTCAGGT+TGG | - | Chr1:100242497-100242516 | MsG0180006108.01.T01:intron | 50.0% | |
GTTGGGAGCCAGAATTCTTC+AGG | - | Chr1:100242493-100242512 | MsG0180006108.01.T01:intron | 50.0% | |
TTTGGTCCAAGTCTCACTGC+AGG | + | Chr1:100242443-100242462 | None:intergenic | 50.0% | |
!! | CAGAATTCTTCAGGTTGGCG+GGG | - | Chr1:100242502-100242521 | MsG0180006108.01.T01:intron | 50.0% |
!! | CCAGAATTCTTCAGGTTGGC+GGG | - | Chr1:100242501-100242520 | MsG0180006108.01.T01:intron | 50.0% |
!! | GCCAGAATTCTTCAGGTTGG+CGG | - | Chr1:100242500-100242519 | MsG0180006108.01.T01:intron | 50.0% |
ACCACGTCAGGTCCTATAGC+TGG | - | Chr1:100242602-100242621 | MsG0180006108.01.T01:intron | 55.0% | |
CCCGCCAACCTGAAGAATTC+TGG | + | Chr1:100242504-100242523 | None:intergenic | 55.0% | |
GCACATGGAGTCCGAGAGCA+TGG | - | Chr1:100242274-100242293 | MsG0180006108.01.T01:CDS | 60.0% | |
GCCAGCTATAGGACCTGACG+TGG | + | Chr1:100242606-100242625 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 100242009 | 100242910 | 100242009 | ID=MsG0180006108.01;Name=MsG0180006108.01 |
Chr1 | mRNA | 100242009 | 100242910 | 100242009 | ID=MsG0180006108.01.T01;Parent=MsG0180006108.01;Name=MsG0180006108.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|220 |
Chr1 | exon | 100242793 | 100242910 | 100242793 | ID=MsG0180006108.01.T01:exon:58887;Parent=MsG0180006108.01.T01 |
Chr1 | exon | 100242624 | 100242704 | 100242624 | ID=MsG0180006108.01.T01:exon:58886;Parent=MsG0180006108.01.T01 |
Chr1 | exon | 100242009 | 100242472 | 100242009 | ID=MsG0180006108.01.T01:exon:58885;Parent=MsG0180006108.01.T01 |
Chr1 | CDS | 100242793 | 100242910 | 100242793 | ID=MsG0180006108.01.T01:cds;Parent=MsG0180006108.01.T01 |
Chr1 | CDS | 100242624 | 100242704 | 100242624 | ID=MsG0180006108.01.T01:cds;Parent=MsG0180006108.01.T01 |
Chr1 | CDS | 100242009 | 100242472 | 100242009 | ID=MsG0180006108.01.T01:cds;Parent=MsG0180006108.01.T01 |
Gene Sequence |
Protein sequence |