Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024247.01.T01 | XP_013470383.1 | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 1.69E-108 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024247.01.T01 | Q9FTA0 | 52.459 | 183 | 76 | 3 | 28 | 205 | 23 | 199 | 2.82E-54 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024247.01.T01 | B7FJD2 | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 8.09e-109 | 320 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180006110.01 | MsG0580024247.01 | 0.819260 | 1.275114e-52 | 9.763799e-50 |
| MsG0480023067.01 | MsG0580024247.01 | 0.814447 | 1.533280e-51 | 1.029087e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580024247.01 | MsG0180006108.01 | PPI |
| MsG0180006108.01 | MsG0580024247.01 | PPI |
| MsG0580024249.01 | MsG0580024247.01 | PPI |
| MsG0180006110.01 | MsG0580024247.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024247.01.T01 | MTR_1g114640 | 83.957 | 187 | 30 | 0 | 1 | 187 | 1 | 187 | 2.05e-112 | 320 |
| MsG0580024247.01.T01 | MTR_1g114640 | 81.818 | 165 | 30 | 0 | 1 | 165 | 1 | 165 | 1.03e-95 | 276 |
| MsG0580024247.01.T01 | MTR_1g033750 | 59.804 | 204 | 79 | 2 | 5 | 205 | 4 | 207 | 1.37e-76 | 229 |
| MsG0580024247.01.T01 | MTR_1g114690 | 50.794 | 189 | 86 | 3 | 1 | 187 | 1 | 184 | 8.32e-55 | 174 |
| MsG0580024247.01.T01 | MTR_1g114690 | 49.198 | 187 | 92 | 2 | 1 | 187 | 1 | 184 | 3.63e-54 | 172 |
| MsG0580024247.01.T01 | MTR_1g114750 | 47.619 | 189 | 95 | 2 | 1 | 187 | 1 | 187 | 3.36e-53 | 170 |
| MsG0580024247.01.T01 | MTR_1g114690 | 43.498 | 223 | 85 | 4 | 1 | 187 | 1 | 218 | 6.45e-48 | 157 |
| MsG0580024247.01.T01 | MTR_6g077990 | 53.793 | 145 | 59 | 2 | 65 | 205 | 43 | 183 | 2.07e-46 | 152 |
| MsG0580024247.01.T01 | MTR_6g077990 | 53.793 | 145 | 59 | 2 | 65 | 205 | 42 | 182 | 2.17e-46 | 152 |
| MsG0580024247.01.T01 | MTR_1g114690 | 50.000 | 168 | 77 | 3 | 1 | 166 | 1 | 163 | 6.53e-46 | 151 |
| MsG0580024247.01.T01 | MTR_1g115130 | 42.927 | 205 | 90 | 3 | 1 | 205 | 1 | 178 | 1.36e-43 | 145 |
| MsG0580024247.01.T01 | MTR_8g100065 | 50.993 | 151 | 65 | 3 | 60 | 205 | 23 | 169 | 4.86e-43 | 143 |
| MsG0580024247.01.T01 | MTR_6g077990 | 54.015 | 137 | 55 | 2 | 73 | 205 | 8 | 140 | 1.62e-42 | 140 |
| MsG0580024247.01.T01 | MTR_8g100065 | 50.993 | 151 | 65 | 3 | 60 | 205 | 45 | 191 | 1.72e-42 | 142 |
| MsG0580024247.01.T01 | MTR_6g077990 | 58.095 | 105 | 44 | 0 | 65 | 169 | 42 | 146 | 4.97e-38 | 129 |
| MsG0580024247.01.T01 | MTR_8g100065 | 57.009 | 107 | 45 | 1 | 60 | 165 | 23 | 129 | 2.19e-36 | 124 |
| MsG0580024247.01.T01 | MTR_8g100065 | 57.009 | 107 | 45 | 1 | 60 | 165 | 45 | 151 | 5.77e-36 | 124 |
| MsG0580024247.01.T01 | MTR_5g015750 | 80.556 | 72 | 14 | 0 | 1 | 72 | 1 | 72 | 6.88e-35 | 120 |
| MsG0580024247.01.T01 | MTR_1g114680 | 85.714 | 77 | 11 | 0 | 111 | 187 | 53 | 129 | 3.27e-31 | 112 |
| MsG0580024247.01.T01 | MTR_7g083570 | 32.215 | 149 | 101 | 0 | 28 | 176 | 84 | 232 | 1.20e-24 | 98.2 |
| MsG0580024247.01.T01 | MTR_3g100750 | 35.766 | 137 | 81 | 3 | 71 | 202 | 109 | 243 | 2.81e-23 | 94.0 |
| MsG0580024247.01.T01 | MTR_8g069110 | 31.176 | 170 | 98 | 4 | 50 | 205 | 90 | 254 | 3.26e-22 | 91.7 |
| MsG0580024247.01.T01 | MTR_2g076350 | 41.176 | 102 | 59 | 1 | 46 | 146 | 52 | 153 | 7.97e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024247.01.T01 | AT5G08350 | 52.459 | 183 | 76 | 3 | 28 | 205 | 23 | 199 | 2.88e-55 | 175 |
| MsG0580024247.01.T01 | AT5G23370 | 48.293 | 205 | 101 | 1 | 1 | 205 | 1 | 200 | 4.15e-55 | 175 |
| MsG0580024247.01.T01 | AT5G23350 | 56.364 | 165 | 62 | 2 | 28 | 187 | 23 | 182 | 4.55e-54 | 172 |
| MsG0580024247.01.T01 | AT5G23360 | 47.525 | 202 | 87 | 4 | 1 | 197 | 1 | 188 | 3.47e-52 | 167 |
| MsG0580024247.01.T01 | AT4G01600 | 36.905 | 168 | 98 | 2 | 46 | 205 | 5 | 172 | 8.15e-30 | 109 |
| MsG0580024247.01.T01 | AT4G01600 | 34.343 | 198 | 121 | 3 | 16 | 205 | 15 | 211 | 1.58e-29 | 109 |
| MsG0580024247.01.T01 | AT4G01600 | 34.694 | 196 | 118 | 4 | 16 | 205 | 15 | 206 | 2.01e-26 | 101 |
| MsG0580024247.01.T01 | AT5G13200 | 31.373 | 153 | 105 | 0 | 35 | 187 | 77 | 229 | 6.21e-24 | 96.3 |
| MsG0580024247.01.T01 | AT1G28200 | 35.664 | 143 | 85 | 3 | 60 | 197 | 97 | 237 | 1.20e-22 | 92.4 |
| MsG0580024247.01.T01 | AT1G28200 | 35.664 | 143 | 85 | 3 | 60 | 197 | 97 | 237 | 1.20e-22 | 92.4 |
| MsG0580024247.01.T01 | AT5G13200 | 32.576 | 132 | 89 | 0 | 35 | 166 | 77 | 208 | 2.12e-22 | 90.9 |
| MsG0580024247.01.T01 | AT2G22475 | 32.895 | 152 | 91 | 4 | 59 | 205 | 133 | 278 | 6.27e-21 | 88.6 |
| MsG0580024247.01.T01 | AT2G22475 | 39.241 | 79 | 48 | 0 | 71 | 149 | 145 | 223 | 5.16e-16 | 74.3 |
Find 39 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACTCACAAAGTTGCTTTC+TGG | 0.165974 | 5:+2518160 | MsG0580024247.01.T01:CDS |
| TTCCTTCATGAGCTACTTAA+TGG | 0.213634 | 5:+2517299 | MsG0580024247.01.T01:CDS |
| GCGTAGATGGTTTCGACTTC+TGG | 0.218018 | 5:+2518416 | MsG0580024247.01.T01:CDS |
| AAGATAACAGATACAGTAAA+AGG | 0.228633 | 5:+2517982 | MsG0580024247.01.T01:CDS |
| TTTACTGTATCTGTTATCTT+TGG | 0.247894 | 5:-2517979 | None:intergenic |
| ACTCTAATCAATTCTCCTTT+TGG | 0.287784 | 5:-2518210 | None:intergenic |
| AGATACTTGGCCGATTCTTC+TGG | 0.307658 | 5:+2517365 | MsG0580024247.01.T01:CDS |
| ATACAGTAAAAGGGAAATTA+AGG | 0.314014 | 5:+2517992 | MsG0580024247.01.T01:CDS |
| CTGACTAAGATGAACATGTT+TGG | 0.338683 | 5:+2517728 | MsG0580024247.01.T01:CDS |
| TGTTACTTATCAACCACATT+AGG | 0.368586 | 5:+2518111 | MsG0580024247.01.T01:CDS |
| TGACTAAGATGAACATGTTT+GGG | 0.379362 | 5:+2517729 | MsG0580024247.01.T01:CDS |
| GATGAACATGTTTGGGAGAA+AGG | 0.393124 | 5:+2517736 | MsG0580024247.01.T01:CDS |
| ATTGATTAGAGTTCTCTATA+AGG | 0.399862 | 5:+2518221 | MsG0580024247.01.T01:CDS |
| AGTAAAAGGGAAATTAAGGT+TGG | 0.443877 | 5:+2517996 | MsG0580024247.01.T01:CDS |
| GTTGTATATGCCAGAAGAAT+CGG | 0.444156 | 5:-2517375 | None:intergenic |
| GGAGGCAAAATTATTCAAGT+TGG | 0.454364 | 5:+2518018 | MsG0580024247.01.T01:CDS |
| ATGAACATGTTTGGGAGAAA+GGG | 0.454867 | 5:+2517737 | MsG0580024247.01.T01:CDS |
| GGCAAAATTATTCAAGTTGG+AGG | 0.471062 | 5:+2518021 | MsG0580024247.01.T01:CDS |
| ATCACCTCAACTCATTCAGT+TGG | 0.473136 | 5:+2517329 | MsG0580024247.01.T01:CDS |
| ATAGAAATAGTCAGCGTAGA+TGG | 0.474979 | 5:+2518403 | MsG0580024247.01.T01:CDS |
| ATGAAGAGGAGGCCAGCTAT+AGG | 0.476519 | 5:-2518135 | None:intergenic |
| CTGTAACCTGCAGTGAGACT+TGG | 0.489945 | 5:+2517955 | MsG0580024247.01.T01:intron |
| ATCAAGATCTCGTCACCAAA+AGG | 0.523407 | 5:+2518195 | MsG0580024247.01.T01:CDS |
| GTAAAAGGGAAATTAAGGTT+GGG | 0.528971 | 5:+2517997 | MsG0580024247.01.T01:CDS |
| TCACCTCAACTCATTCAGTT+GGG | 0.537734 | 5:+2517330 | MsG0580024247.01.T01:CDS |
| AGATAACAGATACAGTAAAA+GGG | 0.540258 | 5:+2517983 | MsG0580024247.01.T01:CDS |
| GTGTATGCAGTCCGAGAGCA+TGG | 0.564348 | 5:+2517770 | MsG0580024247.01.T01:CDS |
| CTGATTACATACCATGCTCT+CGG | 0.564630 | 5:-2517781 | None:intergenic |
| ATGTTTGGGAGAAAGGGTGA+TGG | 0.565214 | 5:+2517743 | MsG0580024247.01.T01:CDS |
| TCCATTACAAAATCAAAGCA+AGG | 0.583726 | 5:+2517401 | MsG0580024247.01.T01:CDS |
| TTCCATTAAGTAGCTCATGA+AGG | 0.584791 | 5:-2517301 | None:intergenic |
| GAAGTCATCAAAGAGATACT+TGG | 0.585940 | 5:+2517352 | MsG0580024247.01.T01:CDS |
| ACCACATTAGGTCCTATAGC+TGG | 0.588201 | 5:+2518123 | MsG0580024247.01.T01:CDS |
| CCAGAAAGCAACTTTGTGAG+TGG | 0.608051 | 5:-2518160 | None:intergenic |
| CTTTGTGAGTGGATATGAAG+AGG | 0.608902 | 5:-2518149 | None:intergenic |
| AAAGGGAAATTAAGGTTGGG+AGG | 0.624997 | 5:+2518000 | MsG0580024247.01.T01:CDS |
| GCCAGCTATAGGACCTAATG+TGG | 0.654715 | 5:-2518124 | None:intergenic |
| TGTGAGTGGATATGAAGAGG+AGG | 0.670894 | 5:-2518146 | None:intergenic |
| CTTCCCAACTGAATGAGTTG+AGG | 0.692685 | 5:-2517333 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATAATTTAATTCATCA+TGG | + | Chr5:2517670-2517689 | MsG0580024247.01.T01:intron | 10.0% |
| !! | TTGTTGCAACAAAAAAAAAA+TGG | - | Chr5:2517568-2517587 | None:intergenic | 20.0% |
| !!! | AAATACAGTTTTGTTAATGT+AGG | - | Chr5:2517437-2517456 | None:intergenic | 20.0% |
| !!! | AATGAAGTTTTAACTGATAA+TGG | + | Chr5:2517919-2517938 | MsG0580024247.01.T01:intron | 20.0% |
| !!! | ATGGTCATTTTTATATTTTC+AGG | + | Chr5:2517689-2517708 | MsG0580024247.01.T01:intron | 20.0% |
| !!! | CTTAATTTGTTTACTATTTC+AGG | + | Chr5:2518308-2518327 | MsG0580024247.01.T01:intron | 20.0% |
| ! | AAGATAACAGATACAGTAAA+AGG | + | Chr5:2517982-2518001 | MsG0580024247.01.T01:CDS | 25.0% |
| ! | AAGTGTGAAGAAAAGATAAA+AGG | - | Chr5:2518291-2518310 | None:intergenic | 25.0% |
| ! | AGATAACAGATACAGTAAAA+GGG | + | Chr5:2517983-2518002 | MsG0580024247.01.T01:CDS | 25.0% |
| ! | ATACAGTAAAAGGGAAATTA+AGG | + | Chr5:2517992-2518011 | MsG0580024247.01.T01:CDS | 25.0% |
| ! | ATCAATGAAAAATTGAAGGT+TGG | - | Chr5:2517820-2517839 | None:intergenic | 25.0% |
| ! | ATTGATTAGAGTTCTCTATA+AGG | + | Chr5:2518221-2518240 | MsG0580024247.01.T01:CDS | 25.0% |
| ! | TGGAATCAATGAAAAATTGA+AGG | - | Chr5:2517824-2517843 | None:intergenic | 25.0% |
| ! | TTTACTGTATCTGTTATCTT+TGG | - | Chr5:2517982-2518001 | None:intergenic | 25.0% |
| !! | TATACTTTGAGTTTGAACTT+TGG | + | Chr5:2517880-2517899 | MsG0580024247.01.T01:intron | 25.0% |
| !!! | TTTCTATGTACTTTTTCTGA+AGG | - | Chr5:2518390-2518409 | None:intergenic | 25.0% |
| AAACTACTATACAATGCTCT+TGG | - | Chr5:2517844-2517863 | None:intergenic | 30.0% | |
| AAGTATACATCATAGCAGTT+TGG | - | Chr5:2517867-2517886 | None:intergenic | 30.0% | |
| AGTAAAAGGGAAATTAAGGT+TGG | + | Chr5:2517996-2518015 | MsG0580024247.01.T01:CDS | 30.0% | |
| CAATCAAAATAACTGATGTC+CGG | + | Chr5:2517522-2517541 | MsG0580024247.01.T01:intron | 30.0% | |
| GTAAAAGGGAAATTAAGGTT+GGG | + | Chr5:2517997-2518016 | MsG0580024247.01.T01:CDS | 30.0% | |
| TACAAAATCAAAGCAAGGTA+TGG | + | Chr5:2517406-2517425 | MsG0580024247.01.T01:intron | 30.0% | |
| TCCATTACAAAATCAAAGCA+AGG | + | Chr5:2517401-2517420 | MsG0580024247.01.T01:CDS | 30.0% | |
| TGACTAAGATGAACATGTTT+GGG | + | Chr5:2517729-2517748 | MsG0580024247.01.T01:CDS | 30.0% | |
| ! | ACTCTAATCAATTCTCCTTT+TGG | - | Chr5:2518213-2518232 | None:intergenic | 30.0% |
| ! | TGTTACTTATCAACCACATT+AGG | + | Chr5:2518111-2518130 | MsG0580024247.01.T01:CDS | 30.0% |
| !! | ACCTTGCTTTGATTTTGTAA+TGG | - | Chr5:2517405-2517424 | None:intergenic | 30.0% |
| AACTTCCCAACAAAATGTCT+CGG | - | Chr5:2517614-2517633 | None:intergenic | 35.0% | |
| ATAGAAATAGTCAGCGTAGA+TGG | + | Chr5:2518403-2518422 | MsG0580024247.01.T01:CDS | 35.0% | |
| ATGAACATGTTTGGGAGAAA+GGG | + | Chr5:2517737-2517756 | MsG0580024247.01.T01:CDS | 35.0% | |
| CTGACTAAGATGAACATGTT+TGG | + | Chr5:2517728-2517747 | MsG0580024247.01.T01:CDS | 35.0% | |
| GAAGTCATCAAAGAGATACT+TGG | + | Chr5:2517352-2517371 | MsG0580024247.01.T01:CDS | 35.0% | |
| GGAGGCAAAATTATTCAAGT+TGG | + | Chr5:2518018-2518037 | MsG0580024247.01.T01:CDS | 35.0% | |
| GTTGTATATGCCAGAAGAAT+CGG | - | Chr5:2517378-2517397 | None:intergenic | 35.0% | |
| TTCCATTAAGTAGCTCATGA+AGG | - | Chr5:2517304-2517323 | None:intergenic | 35.0% | |
| TTCCTTCATGAGCTACTTAA+TGG | + | Chr5:2517299-2517318 | MsG0580024247.01.T01:CDS | 35.0% | |
| ! | ACATGCTGTATCTTTTCATG+TGG | - | Chr5:2518342-2518361 | None:intergenic | 35.0% |
| ! | TTCATTCGGGTTAAATAGCA+TGG | - | Chr5:2517468-2517487 | None:intergenic | 35.0% |
| !! | AAGGAATGAGAGCATTTACA+TGG | - | Chr5:2518272-2518291 | None:intergenic | 35.0% |
| !! | GGCAAAATTATTCAAGTTGG+AGG | + | Chr5:2518021-2518040 | MsG0580024247.01.T01:CDS | 35.0% |
| !!! | CGGACATCAGTTATTTTGAT+TGG | - | Chr5:2517524-2517543 | None:intergenic | 35.0% |
| !!! | GCTTCTTCACATTTTGACTT+TGG | - | Chr5:2518368-2518387 | None:intergenic | 35.0% |
| AAAGGGAAATTAAGGTTGGG+AGG | + | Chr5:2518000-2518019 | MsG0580024247.01.T01:CDS | 40.0% | |
| ACTTCCCAACAAAATGTCTC+GGG | - | Chr5:2517613-2517632 | None:intergenic | 40.0% | |
| AGTTTGAACTTTGGCGTGAT+TGG | + | Chr5:2517889-2517908 | MsG0580024247.01.T01:intron | 40.0% | |
| ATCAAGATCTCGTCACCAAA+AGG | + | Chr5:2518195-2518214 | MsG0580024247.01.T01:CDS | 40.0% | |
| ATCACCTCAACTCATTCAGT+TGG | + | Chr5:2517329-2517348 | MsG0580024247.01.T01:CDS | 40.0% | |
| CTGATTACATACCATGCTCT+CGG | - | Chr5:2517784-2517803 | None:intergenic | 40.0% | |
| CTTTGTGAGTGGATATGAAG+AGG | - | Chr5:2518152-2518171 | None:intergenic | 40.0% | |
| GATGAACATGTTTGGGAGAA+AGG | + | Chr5:2517736-2517755 | MsG0580024247.01.T01:CDS | 40.0% | |
| TAACTGATGTCCGGAATTCA+CGG | + | Chr5:2517531-2517550 | MsG0580024247.01.T01:intron | 40.0% | |
| TCACCTCAACTCATTCAGTT+GGG | + | Chr5:2517330-2517349 | MsG0580024247.01.T01:CDS | 40.0% | |
| ! | AACCTCGGGATGTTTTCATT+CGG | - | Chr5:2517482-2517501 | None:intergenic | 40.0% |
| ! | AACTTTTCAGCGTACAAGAC+GGG | + | Chr5:2518064-2518083 | MsG0580024247.01.T01:CDS | 40.0% |
| ! | ATGTCCCGAGACATTTTGTT+GGG | + | Chr5:2517606-2517625 | MsG0580024247.01.T01:intron | 40.0% |
| ! | CAACTTTTCAGCGTACAAGA+CGG | + | Chr5:2518063-2518082 | MsG0580024247.01.T01:CDS | 40.0% |
| ! | TATGTCCCGAGACATTTTGT+TGG | + | Chr5:2517605-2517624 | MsG0580024247.01.T01:intron | 40.0% |
| !!! | GGTTTCGACTTCTGGTTTTT+GGG | + | Chr5:2518424-2518443 | MsG0580024247.01.T01:CDS | 40.0% |
| !!! | TGGTTTCGACTTCTGGTTTT+TGG | + | Chr5:2518423-2518442 | MsG0580024247.01.T01:CDS | 40.0% |
| !!! | TTTTGGTGACGAGATCTTGA+TGG | - | Chr5:2518196-2518215 | None:intergenic | 40.0% |
| ACCACATTAGGTCCTATAGC+TGG | + | Chr5:2518123-2518142 | MsG0580024247.01.T01:CDS | 45.0% | |
| ATGTTTGGGAGAAAGGGTGA+TGG | + | Chr5:2517743-2517762 | MsG0580024247.01.T01:CDS | 45.0% | |
| CCAGAAAGCAACTTTGTGAG+TGG | - | Chr5:2518163-2518182 | None:intergenic | 45.0% | |
| CTTCCCAACTGAATGAGTTG+AGG | - | Chr5:2517336-2517355 | None:intergenic | 45.0% | |
| TGTGAGTGGATATGAAGAGG+AGG | - | Chr5:2518149-2518168 | None:intergenic | 45.0% | |
| ! | ACCTCGGGATGTTTTCATTC+GGG | - | Chr5:2517481-2517500 | None:intergenic | 45.0% |
| ! | ACTTTTCAGCGTACAAGACG+GGG | + | Chr5:2518065-2518084 | MsG0580024247.01.T01:CDS | 45.0% |
| ! | AGATACTTGGCCGATTCTTC+TGG | + | Chr5:2517365-2517384 | MsG0580024247.01.T01:CDS | 45.0% |
| ! | CCACTCACAAAGTTGCTTTC+TGG | + | Chr5:2518160-2518179 | MsG0580024247.01.T01:CDS | 45.0% |
| !! | TGATTGGCTGCTGCTTTGTT+CGG | - | Chr5:2517508-2517527 | None:intergenic | 45.0% |
| !! | TGAATTAAATTATATTAAAT+TGG | - | Chr5:2517667-2517686 | None:intergenic | 5.0% |
| ACCACTACCTCCGTGAATTC+CGG | - | Chr5:2517544-2517563 | None:intergenic | 50.0% | |
| ACCCGAATGAAAACATCCCG+AGG | + | Chr5:2517477-2517496 | MsG0580024247.01.T01:intron | 50.0% | |
| ATGAAGAGGAGGCCAGCTAT+AGG | - | Chr5:2518138-2518157 | None:intergenic | 50.0% | |
| CTGTAACCTGCAGTGAGACT+TGG | + | Chr5:2517955-2517974 | MsG0580024247.01.T01:intron | 50.0% | |
| GCCAGCTATAGGACCTAATG+TGG | - | Chr5:2518127-2518146 | None:intergenic | 50.0% | |
| GCGTAGATGGTTTCGACTTC+TGG | + | Chr5:2518416-2518435 | MsG0580024247.01.T01:CDS | 50.0% | |
| GTCTCGGGACATATTCACGA+TGG | - | Chr5:2517598-2517617 | None:intergenic | 50.0% | |
| TTTGGTCCAAGTCTCACTGC+AGG | - | Chr5:2517964-2517983 | None:intergenic | 50.0% | |
| ! | TGCTTTGTTCGGGACAACCT+CGG | - | Chr5:2517497-2517516 | None:intergenic | 50.0% |
| !! | GATTGGCTGCTGCTTTGTTC+GGG | - | Chr5:2517507-2517526 | None:intergenic | 50.0% |
| CTGATGTCCGGAATTCACGG+AGG | + | Chr5:2517534-2517553 | MsG0580024247.01.T01:intron | 55.0% | |
| GTGTATGCAGTCCGAGAGCA+TGG | + | Chr5:2517770-2517789 | MsG0580024247.01.T01:CDS | 55.0% | |
| TCCGGAATTCACGGAGGTAG+TGG | + | Chr5:2517540-2517559 | MsG0580024247.01.T01:intron | 55.0% | |
| ! | GCTTTGTTCGGGACAACCTC+GGG | - | Chr5:2517496-2517515 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 2517287 | 2518455 | 2517287 | ID=MsG0580024247.01;Name=MsG0580024247.01 |
| Chr5 | mRNA | 2517287 | 2518455 | 2517287 | ID=MsG0580024247.01.T01;Parent=MsG0580024247.01;Name=MsG0580024247.01.T01;_AED=0.20;_eAED=0.21;_QI=0|1|0.5|1|1|1|4|0|205 |
| Chr5 | exon | 2517287 | 2517422 | 2517287 | ID=MsG0580024247.01.T01:exon:1737;Parent=MsG0580024247.01.T01 |
| Chr5 | exon | 2517711 | 2517791 | 2517711 | ID=MsG0580024247.01.T01:exon:1738;Parent=MsG0580024247.01.T01 |
| Chr5 | exon | 2517968 | 2518242 | 2517968 | ID=MsG0580024247.01.T01:exon:1739;Parent=MsG0580024247.01.T01 |
| Chr5 | exon | 2518330 | 2518455 | 2518330 | ID=MsG0580024247.01.T01:exon:1740;Parent=MsG0580024247.01.T01 |
| Chr5 | CDS | 2517287 | 2517422 | 2517287 | ID=MsG0580024247.01.T01:cds;Parent=MsG0580024247.01.T01 |
| Chr5 | CDS | 2517711 | 2517791 | 2517711 | ID=MsG0580024247.01.T01:cds;Parent=MsG0580024247.01.T01 |
| Chr5 | CDS | 2517968 | 2518242 | 2517968 | ID=MsG0580024247.01.T01:cds;Parent=MsG0580024247.01.T01 |
| Chr5 | CDS | 2518330 | 2518455 | 2518330 | ID=MsG0580024247.01.T01:cds;Parent=MsG0580024247.01.T01 |
| Gene Sequence |
| Protein sequence |
