AlfalfaGEDB | MsG0180006110.01

M. sativa cultivar ZhongmuNo.1 / MsG0180006110.01

KEGG: -
GO: -
PFAM: PF02893

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006110.01.T01	GAU18093.1	86.19	210	29	0	1	210	1	210	2.89E-129	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006110.01.T01	Q9FTA0	57.672	189	69	3	28	211	23	205	6.26E-72	221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006110.01.T01	A0A2Z6M7E6	86.190	210	29	0	1	210	1	210	1.38e-129	374

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048887.01	MsG0180006110.01	-0.801121	1.045540e-48	4.953510e-46
MsG0080048889.01	MsG0180006110.01	0.828377	9.297476e-55	9.225156e-52
MsG0080048918.01	MsG0180006110.01	-0.811963	5.383000e-51	3.378767e-48
MsG0080048919.01	MsG0180006110.01	-0.827834	1.257034e-54	1.227536e-51
MsG0080048986.01	MsG0180006110.01	-0.802854	4.604663e-49	2.279645e-46
MsG0080049023.01	MsG0180006110.01	-0.841429	4.777605e-58	7.018522e-55
MsG0080049038.01	MsG0180006110.01	-0.860322	2.240116e-63	6.098644e-60
MsG0080049066.01	MsG0180006110.01	-0.847382	1.198258e-59	2.125977e-56
MsG0080049133.01	MsG0180006110.01	-0.837371	5.408112e-57	7.009932e-54
MsG0180000367.01	MsG0180006110.01	0.839600	1.438470e-57	1.996309e-54

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PPI

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Gene1	Gene2	Type
MsG0180006110.01	MsG0180006108.01	PPI
MsG0180006110.01	MsG0580024247.01	PPI
MsG0580024249.01	MsG0180006110.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006110.01.T01	MTR_1g114640	85.238	210	31	0	1	210	1	210	5.57e-133	373
MsG0180006110.01.T01	MTR_1g114640	83.636	165	27	0	1	165	1	165	1.55e-97	281
MsG0180006110.01.T01	MTR_1g033750	63.810	210	73	2	5	211	4	213	5.73e-92	269
MsG0180006110.01.T01	MTR_1g114690	52.607	211	97	2	1	211	1	208	4.45e-72	218
MsG0180006110.01.T01	MTR_1g114690	50.235	213	103	2	1	213	1	210	3.26e-69	211
MsG0180006110.01.T01	MTR_1g114750	48.372	215	107	2	1	213	1	213	3.61e-68	209
MsG0180006110.01.T01	MTR_1g114690	45.850	253	84	4	1	211	1	242	4.25e-65	202
MsG0180006110.01.T01	MTR_1g115130	47.393	211	84	3	1	211	1	184	6.24e-58	182
MsG0180006110.01.T01	MTR_6g077990	52.469	162	77	0	49	210	26	187	3.76e-56	177
MsG0180006110.01.T01	MTR_6g077990	53.165	158	74	0	53	210	31	188	4.52e-56	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006110.01.T01	AT5G08350	57.672	189	69	3	28	211	23	205	6.39e-73	221
MsG0180006110.01.T01	AT5G23370	53.081	211	94	1	1	211	1	206	1.26e-72	220
MsG0180006110.01.T01	AT5G23350	56.614	189	72	2	28	211	23	206	3.95e-70	213
MsG0180006110.01.T01	AT5G23360	50.000	212	91	3	1	211	1	198	1.02e-67	207
MsG0180006110.01.T01	AT4G01600	40.000	170	94	2	46	207	5	174	3.98e-40	136
MsG0180006110.01.T01	AT4G01600	37.000	200	117	3	16	207	15	213	6.11e-40	137
MsG0180006110.01.T01	AT5G13200	35.429	175	113	0	35	209	77	251	2.37e-38	134
MsG0180006110.01.T01	AT4G01600	36.923	195	119	3	16	207	15	208	1.07e-36	128
MsG0180006110.01.T01	AT1G28200	38.667	150	89	2	60	208	97	244	6.02e-34	122
MsG0180006110.01.T01	AT1G28200	38.667	150	89	2	60	208	97	244	6.02e-34	122

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Find 39 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATAACAGATACAGTAAA+AGG	0.228633	1:-100258251	MsG0180006110.01.T01:CDS
ACCACATTAGGTCCTATAGC+TGG	0.588201	1:-100258110	MsG0180006110.01.T01:CDS
ACTCTAATCAATTCTCCTTT+TGG	0.287784	1:+100258023	None:intergenic
AGAAAACTTATATCTTCAGC+AGG	0.492693	1:-100257773	MsG0180006110.01.T01:CDS
AGATAACAGATACAGTAAAA+GGG	0.540258	1:-100258250	MsG0180006110.01.T01:CDS
AGATACTTGGCTGATTCTTC+TGG	0.277973	1:-100258670	MsG0180006110.01.T01:CDS
AGTAAAAGGGAAATTAAGGT+TGG	0.443877	1:-100258237	MsG0180006110.01.T01:CDS
ATACAGTAAAAGGGAAATTA+AGG	0.314014	1:-100258241	MsG0180006110.01.T01:CDS
ATAGAAATAGTCAGCGTAGA+TGG	0.474979	1:-100257831	MsG0180006110.01.T01:CDS
ATCAAGATCTCGTCACCAAA+AGG	0.523407	1:-100258038	MsG0180006110.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTACTATACAATGCTCT+TGG	+	Chr1:100258126-100258145	None:intergenic	30.0%
AGAAAACTTATATCTTCAGC+AGG	-	Chr1:100258736-100258755	MsG0180006110.01.T01:CDS	30.0%
AGTAAAAGGGAAATTAAGGT+TGG	-	Chr1:100258272-100258291	MsG0180006110.01.T01:intron	30.0%
GTAAAAGGGAAATTAAGGTT+GGG	-	Chr1:100258273-100258292	MsG0180006110.01.T01:intron	30.0%
TCCATTACAAAATCAAAGCA+AGG	-	Chr1:100257875-100257894	MsG0180006110.01.T01:CDS	30.0%
TGACTAAGATGAACATGTTT+GGG	-	Chr1:100258011-100258030	MsG0180006110.01.T01:intron	30.0%
AATTTGAACTTTGGCGTGAT+TGG	-	Chr1:100258165-100258184	MsG0180006110.01.T01:CDS	35.0%
ATAGAAATAGTCAGCGTAGA+TGG	-	Chr1:100258678-100258697	MsG0180006110.01.T01:CDS	35.0%
ATGAACATGTTTGGGAGAAA+GGG	-	Chr1:100258019-100258038	MsG0180006110.01.T01:CDS	35.0%
CTGACTAAGATGAACATGTT+TGG	-	Chr1:100258010-100258029	MsG0180006110.01.T01:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	100257761	100258770	100257761	ID=MsG0180006110.01;Name=MsG0180006110.01
Chr1	mRNA	100257761	100258770	100257761	ID=MsG0180006110.01.T01;Parent=MsG0180006110.01;Name=MsG0180006110.01.T01;_AED=0.38;_eAED=0.40;_QI=0\|0\|0\|1\|1\|1\|4\|0\|218
Chr1	exon	100258635	100258770	100258635	ID=MsG0180006110.01.T01:exon:38174;Parent=MsG0180006110.01.T01
Chr1	exon	100258458	100258538	100258458	ID=MsG0180006110.01.T01:exon:38173;Parent=MsG0180006110.01.T01
Chr1	exon	100258013	100258287	100258013	ID=MsG0180006110.01.T01:exon:38172;Parent=MsG0180006110.01.T01
Chr1	exon	100257761	100257925	100257761	ID=MsG0180006110.01.T01:exon:38171;Parent=MsG0180006110.01.T01
Chr1	CDS	100258635	100258770	100258635	ID=MsG0180006110.01.T01:cds;Parent=MsG0180006110.01.T01
Chr1	CDS	100258458	100258538	100258458	ID=MsG0180006110.01.T01:cds;Parent=MsG0180006110.01.T01
Chr1	CDS	100258013	100258287	100258013	ID=MsG0180006110.01.T01:cds;Parent=MsG0180006110.01.T01
Chr1	CDS	100257761	100257925	100257761	ID=MsG0180006110.01.T01:cds;Parent=MsG0180006110.01.T01

Gene Sequence

>MsG0180006110.01.T01

ATGAAGACGTCATTCCTTCATGAGCTACTTAATGGAATTTCTATCACCTCAACTCATTCAGTTGGGAAGTCATCAAAGAGATACTTGGCTGATTCTTCTGGCATATACAACAAATCCATTACAAAATCAAAGCAAGGTAAATTTAATTCAGTTCTGACTAAGATGAACATGTTTGGGAGAAAGGGTGATGGTTTTGTGCATGCAGTCCGAGAGCATGTGAGACTTGGACCAAAGATAACAGATACAGTAAAAGGGAAATTAAGGTTGGGAGCCAGAATTATTCAAGTTGGAGGAATAGAGAAAGTGTTTATGCAACTTTTCAGCGTACAAGACGGGGAGAAGCTGTTGAAAGCGTCACAATGTTACTTATCAACCACATTAGGTCCTATAGCTGGCCTCCTCTTCATATCCACTCACAAAGTTGCTTTCTGGAGTGACAAATCCATCAAGATCTCGTCACCAAAAGGAGAATTGATTAGAGTTCTCTATAAGGTCTCTATTCCACATGAAAAGATACAGCATGTCAACCAAAGTCAAAATGTGAAGAAGCCTTCAGAAAAGTACATAGAAATAGTCAGCGTAGATGGTTTCGACTTCTGGTTTTTGGGTTTCTTTAATTATAAGAAAACTTATATCTTCAGCAGGCTATTACCCTAG

Protein sequence

>MsG0180006110.01.T01

MKTSFLHELLNGISITSTHSVGKSSKRYLADSSGIYNKSITKSKQGKFNSVLTKMNMFGRKGDGFVHAVREHVRLGPKITDTVKGKLRLGARIIQVGGIEKVFMQLFSVQDGEKLLKASQCYLSTTLGPIAGLLFISTHKVAFWSDKSIKISSPKGELIRVLYKVSIPHEKIQHVNQSQNVKKPSEKYIEIVSVDGFDFWFLGFFNYKKTYIFSRLLP*