AlfalfaGEDB | MsG0180006138.01

M. sativa cultivar ZhongmuNo.1 / MsG0180006138.01

KEGG: -
GO: GO:0003676
PFAM: PF01585

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006138.01.T01	KEH44457.1	96	125	5	0	45	169	10	134	4.02E-79	241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006138.01.T01	A0A072VRR3	96.000	125	5	0	45	169	10	134	1.92e-79	241

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047791.01	MsG0180006138.01	0.800089	1.697133e-48	7.832678e-46
MsG0080047912.01	MsG0180006138.01	0.808047	3.752229e-50	2.123411e-47
MsG0080047944.01	MsG0180006138.01	0.800066	1.715982e-48	7.914955e-46
MsG0080047957.01	MsG0180006138.01	0.808598	2.862459e-50	1.643519e-47
MsG0080047959.01	MsG0180006138.01	0.820155	7.963273e-53	6.252031e-50
MsG0080048205.01	MsG0180006138.01	0.812692	3.730862e-51	2.388124e-48
MsG0080048830.01	MsG0180006138.01	0.820211	7.733847e-53	6.080959e-50
MsG0080048964.01	MsG0180006138.01	0.831410	1.696051e-55	1.838871e-52
MsG0080049032.01	MsG0180006138.01	0.824825	6.542070e-54	5.860066e-51
MsG0080049050.01	MsG0180006138.01	0.810540	1.095465e-50	6.621124e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006138.01.T01	MTR_1g115255	96.000	125	5	0	45	169	10	134	4.87e-83	241
MsG0180006138.01.T01	MTR_1g115255	96.721	122	4	0	48	169	1	122	1.95e-81	236
MsG0180006138.01.T01	MTR_1g115255	92.913	127	4	1	48	169	1	127	1.09e-78	230

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180006138.01.T01	AT5G08535	60.526	114	35	2	57	169	12	116	1.42e-35	120
MsG0180006138.01.T01	AT5G08535	60.526	114	35	2	57	169	12	116	1.42e-35	120
MsG0180006138.01.T01	AT5G08535	60.526	114	35	2	57	169	12	116	1.42e-35	120
MsG0180006138.01.T01	AT5G08535	60.526	114	35	2	57	169	37	141	2.60e-35	120
MsG0180006138.01.T01	AT3G52350	57.143	119	42	3	52	169	70	180	1.62e-29	107

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Find 49 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAATAAACGAGGTT+TGG	0.364649	1:+100602279	MsG0180006138.01.T01:CDS
AAATGTATGAGAATTGATGA+TGG	0.601449	1:+100604902	MsG0180006138.01.T01:exon
AAGAAGCATGGTTGGAAAGA+AGG	0.444986	1:+100601688	MsG0180006138.01.T01:CDS
AAGAATAATAAACGAGGTTT+GGG	0.354264	1:+100602280	MsG0180006138.01.T01:CDS
AAGCCAAAGCACTTTCTAAA+CGG	0.409716	1:+100604799	MsG0180006138.01.T01:CDS
AAGGTTGTGAAACCTGATCA+CGG	0.667061	1:+100602322	MsG0180006138.01.T01:CDS
AATGTATGAGAATTGATGAT+GGG	0.631074	1:+100604903	MsG0180006138.01.T01:exon
ACAATCAACTCTTCTAATAT+AGG	0.290837	1:+100601546	MsG0180006138.01.T01:CDS
ACAGGGTAGATTAGAACCTG+TGG	0.628498	1:+100602246	MsG0180006138.01.T01:intron
ACTAAGAAAGTGAATGCAAA+AGG	0.483023	1:-100604951	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACTTTACGGTAACTAT+AGG	+	Chr1:100603121-100603140	MsG0180006138.01.T01:intron	30.0%
AACATAGAGGTGAAAATAAG+AGG	+	Chr1:100603423-100603442	MsG0180006138.01.T01:intron	30.0%
AATTGCATATTTAGTAGCCT+TGG	+	Chr1:100602031-100602050	MsG0180006138.01.T01:intron	30.0%
ACAAACACATCATAACATAG+AGG	+	Chr1:100603410-100603429	MsG0180006138.01.T01:intron	30.0%
ACTAAGAAAGTGAATGCAAA+AGG	-	Chr1:100604954-100604973	None:intergenic	30.0%
AGTCCAATTGTTATAGACAA+AGG	+	Chr1:100604023-100604042	MsG0180006138.01.T01:intron	30.0%
AGTCGTATTATAAATCTACG+AGG	+	Chr1:100602809-100602828	MsG0180006138.01.T01:intron	30.0%
ATATACAAAATTCAGAGGGA+AGG	+	Chr1:100605154-100605173	MsG0180006138.01.T01:three_prime_UTR	30.0%
ATCCAATTTACTCTTCTTAC+AGG	-	Chr1:100603996-100604015	None:intergenic	30.0%
ATTGAACAACTCTAGGTAAT+TGG	+	Chr1:100604277-100604296	MsG0180006138.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	100601222	100605225	100601222	ID=MsG0180006138.01;Name=MsG0180006138.01
Chr1	mRNA	100601222	100605225	100601222	ID=MsG0180006138.01.T01;Parent=MsG0180006138.01;Name=MsG0180006138.01.T01;_AED=0.40;_eAED=0.40;_QI=0\|1\|0.8\|1\|0.75\|0.8\|5\|314\|169
Chr1	exon	100601222	100601337	100601222	ID=MsG0180006138.01.T01:exon:11552;Parent=MsG0180006138.01.T01
Chr1	exon	100601491	100601575	100601491	ID=MsG0180006138.01.T01:exon:11553;Parent=MsG0180006138.01.T01
Chr1	exon	100601682	100601735	100601682	ID=MsG0180006138.01.T01:exon:11554;Parent=MsG0180006138.01.T01
Chr1	exon	100602250	100602372	100602250	ID=MsG0180006138.01.T01:exon:11555;Parent=MsG0180006138.01.T01
Chr1	exon	100604780	100605225	100604780	ID=MsG0180006138.01.T01:exon:11556;Parent=MsG0180006138.01.T01
Chr1	CDS	100601222	100601337	100601222	ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1	CDS	100601491	100601575	100601491	ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1	CDS	100601682	100601735	100601682	ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1	CDS	100602250	100602372	100602250	ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1	CDS	100604780	100604911	100604780	ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1	three_prime_UTR	100604912	100605225	100604912	ID=MsG0180006138.01.T01:three_prime_utr;Parent=MsG0180006138.01.T01

Gene Sequence

>MsG0180006138.01.T01

TTTTTATTTATCTGTCTCCTACCTTGGTTAAGGAGAGGGAGAAGAGAAGAGACAGAGAGGAGGAGAAAAGAAAAAGAAGAACACGACACGACAAGAAAAGCTCTGATCAATTCGATATTAAGCTTGTGTAAATCCATAGCCATGGAAGAAACGTCGAGTTTAGCAACAACAACAATCAACTCTTCTAATATAGGGTTTCAGCTTTTGAAGAAGCATGGTTGGAAAGAAGGGACTGGTCTTGGAATCTCTGAGCAGGGTAGATTAGAACCTGTGGAAACTCGTGTAAAGAATAATAAACGAGGTTTGGGAGCAGATATAGTGAAGAAGAAGGTTGTGAAACCTGATCACGGTGATTCCTCCAAAGGAGACAATAAGCAGGAACAGTTGTCTCAAAAGAAAGCCAAAGCACTTTCTAAACGGGTGAGAAAGATGCAAGAGATTGAAAAGAAGATGCAAGAGAAGGAATTCGAGCGCGCTTTCTTTAGAGAGTTCTGGCCTGAAAATGTATGA

Protein sequence

>MsG0180006138.01.T01

FLFICLLPWLRRGRREETERRRKEKEEHDTTRKALINSILSLCKSIAMEETSSLATTTINSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPDHGDSSKGDNKQEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPENV*