AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006138.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006138.01.T01 MTR_1g115255 96.000 125 5 0 45 169 10 134 4.87e-83 241
MsG0180006138.01.T01 MTR_1g115255 96.721 122 4 0 48 169 1 122 1.95e-81 236
MsG0180006138.01.T01 MTR_1g115255 92.913 127 4 1 48 169 1 127 1.09e-78 230
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006138.01.T01 AT5G08535 60.526 114 35 2 57 169 12 116 1.42e-35 120
MsG0180006138.01.T01 AT5G08535 60.526 114 35 2 57 169 12 116 1.42e-35 120
MsG0180006138.01.T01 AT5G08535 60.526 114 35 2 57 169 12 116 1.42e-35 120
MsG0180006138.01.T01 AT5G08535 60.526 114 35 2 57 169 37 141 2.60e-35 120
MsG0180006138.01.T01 AT3G52350 57.143 119 42 3 52 169 70 180 1.62e-29 107

Find 49 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTCTAATATAGGGTTTC+AGG 0.106839 1:+100601554 MsG0180006138.01.T01:CDS
ACAATCAACTCTTCTAATAT+AGG 0.290837 1:+100601546 MsG0180006138.01.T01:CDS
TACCTGCTTATTGTCTCCTT+TGG 0.305621 1:-100602353 None:intergenic
CAATCAACTCTTCTAATATA+GGG 0.322273 1:+100601547 MsG0180006138.01.T01:CDS
GCGCTTTCTTTAGAGAGTTC+TGG 0.323271 1:+100604874 MsG0180006138.01.T01:CDS
ATGATAGGCCATGTCCTTCC+TGG 0.332353 1:+100605179 MsG0180006138.01.T01:three_prime_UTR
AAGAATAATAAACGAGGTTT+GGG 0.354264 1:+100602280 MsG0180006138.01.T01:CDS
CCAGGATACTTACAGGATAT+AGG 0.358028 1:+100605025 MsG0180006138.01.T01:three_prime_UTR
CTGCTTATTGTCTCCTTTGG+AGG 0.363940 1:-100602350 None:intergenic
AAAGAATAATAAACGAGGTT+TGG 0.364649 1:+100602279 MsG0180006138.01.T01:CDS
TATTTATCTGTCTCCTACCT+TGG 0.381141 1:+100601226 MsG0180006138.01.T01:CDS
TGGAAAGAAGGGACTGGTCT+TGG 0.385117 1:+100601700 MsG0180006138.01.T01:CDS
CCTATATCCTGTAAGTATCC+TGG 0.397988 1:-100605025 None:intergenic
AAGCCAAAGCACTTTCTAAA+CGG 0.409716 1:+100604799 MsG0180006138.01.T01:CDS
CGACGTTTCTTCCATGGCTA+TGG 0.409832 1:-100601508 None:intergenic
CACCCGTTTAGAAAGTGCTT+TGG 0.422675 1:-100604802 None:intergenic
TCTGTCTCCTACCTTGGTTA+AGG 0.425474 1:+100601232 MsG0180006138.01.T01:CDS
TTGGAGGAATCACCGTGATC+AGG 0.437824 1:-100602334 None:intergenic
AAGAAGCATGGTTGGAAAGA+AGG 0.444986 1:+100601688 MsG0180006138.01.T01:CDS
GATAAATATACAAAATTCAG+AGG 0.460514 1:+100605149 MsG0180006138.01.T01:three_prime_UTR
AGCCAAAGCACTTTCTAAAC+GGG 0.461909 1:+100604800 MsG0180006138.01.T01:CDS
TGGTCTTGGAATCTCTGAGC+AGG 0.482435 1:+100601714 MsG0180006138.01.T01:CDS
ACTAAGAAAGTGAATGCAAA+AGG 0.483023 1:-100604951 None:intergenic
AGCAGATATAGTGAAGAAGA+AGG 0.498955 1:+100602303 MsG0180006138.01.T01:CDS
TTCAGAGGGAAGGTAATGAT+AGG 0.500568 1:+100605164 MsG0180006138.01.T01:three_prime_UTR
CTATATCCTGTAAGTATCCT+GGG 0.500671 1:-100605024 None:intergenic
TAAACTCGACGTTTCTTCCA+TGG 0.501987 1:-100601514 None:intergenic
TGAAAAGAAGATGCAAGAGA+AGG 0.518345 1:+100604842 MsG0180006138.01.T01:CDS
TTCTTTACACGAGTTTCCAC+AGG 0.518432 1:-100602262 None:intergenic
GGAGAAGAGAAGAGACAGAG+AGG 0.534554 1:+100601259 MsG0180006138.01.T01:CDS
AGAAGCATGGTTGGAAAGAA+GGG 0.546784 1:+100601689 MsG0180006138.01.T01:CDS
TCCTACCTTGGTTAAGGAGA+GGG 0.546895 1:+100601238 MsG0180006138.01.T01:CDS
GAAGAGAAGAGACAGAGAGG+AGG 0.548384 1:+100601262 MsG0180006138.01.T01:CDS
TTTCAAAGTCGTGTGCAAGT+TGG 0.562551 1:+100604985 MsG0180006138.01.T01:three_prime_UTR
CTCCAAAGGAGACAATAAGC+AGG 0.587624 1:+100602351 MsG0180006138.01.T01:CDS
CTTGTGTAAATCCATAGCCA+TGG 0.590413 1:+100601497 MsG0180006138.01.T01:CDS
CTTCTCCCTCTCCTTAACCA+AGG 0.596337 1:-100601243 None:intergenic
AAATGTATGAGAATTGATGA+TGG 0.601449 1:+100604902 MsG0180006138.01.T01:exon
ATATACAAAATTCAGAGGGA+AGG 0.608055 1:+100605154 MsG0180006138.01.T01:three_prime_UTR
CTCCTACCTTGGTTAAGGAG+AGG 0.610109 1:+100601237 MsG0180006138.01.T01:CDS
CATGGTTGGAAAGAAGGGAC+TGG 0.614326 1:+100601694 MsG0180006138.01.T01:CDS
GATCACGGTGATTCCTCCAA+AGG 0.624641 1:+100602337 MsG0180006138.01.T01:CDS
ACAGGGTAGATTAGAACCTG+TGG 0.628498 1:+100602246 MsG0180006138.01.T01:intron
AATGTATGAGAATTGATGAT+GGG 0.631074 1:+100604903 MsG0180006138.01.T01:exon
TCCCTCTCCTTAACCAAGGT+AGG 0.647767 1:-100601239 None:intergenic
GTGTGCAAGTTGGATCTCGA+AGG 0.648173 1:+100604995 MsG0180006138.01.T01:three_prime_UTR
ATAAATATACAAAATTCAGA+GGG 0.657730 1:+100605150 MsG0180006138.01.T01:three_prime_UTR
AAGGTTGTGAAACCTGATCA+CGG 0.667061 1:+100602322 MsG0180006138.01.T01:CDS
CGTGTAAAGAATAATAAACG+AGG 0.690122 1:+100602274 MsG0180006138.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAGAAAAAAAAAA+AGG - Chr1:100605110-100605129 None:intergenic 10.0%
!! ATAAAAATAAAAAAGCTATA+GGG + Chr1:100604243-100604262 MsG0180006138.01.T01:intron 10.0%
!! TATAAAAATAAAAAAGCTAT+AGG + Chr1:100604242-100604261 MsG0180006138.01.T01:intron 10.0%
!!! TTAAAAATATATTTAAAGTG+GGG + Chr1:100603541-100603560 MsG0180006138.01.T01:intron 10.0%
!! AATAGAATTATGCAAATAAT+AGG + Chr1:100602774-100602793 MsG0180006138.01.T01:intron 15.0%
!! AATTATTAGAAAGAAAATTG+AGG + Chr1:100603897-100603916 MsG0180006138.01.T01:intron 15.0%
!! ATAAATATACAAAATTCAGA+GGG + Chr1:100605150-100605169 MsG0180006138.01.T01:three_prime_UTR 15.0%
!! ATAGAATTATGCAAATAATA+GGG + Chr1:100602775-100602794 MsG0180006138.01.T01:intron 15.0%
!! ATGTGCATTTAAATTAAATT+AGG - Chr1:100601989-100602008 None:intergenic 15.0%
!! TATGCATTCTTAAAAAAAAA+TGG + Chr1:100602971-100602990 MsG0180006138.01.T01:intron 15.0%
!! TCTTAAAAAAAAATGGAAAA+GGG + Chr1:100602978-100602997 MsG0180006138.01.T01:intron 15.0%
!! TGTGCATTTAAATTAAATTA+GGG - Chr1:100601988-100602007 None:intergenic 15.0%
!! TTAAATTAGTATAAGATTGT+AGG + Chr1:100602055-100602074 MsG0180006138.01.T01:intron 15.0%
!! TTCTTAAAAAAAAATGGAAA+AGG + Chr1:100602977-100602996 MsG0180006138.01.T01:intron 15.0%
!! AAACTTCAAAAATAGGAAAT+AGG + Chr1:100604507-100604526 MsG0180006138.01.T01:intron 20.0%
!! AACAATTTACAATAGTAGAA+GGG + Chr1:100602424-100602443 MsG0180006138.01.T01:intron 20.0%
!! AACTACATAACTATGTAAAA+CGG + Chr1:100602448-100602467 MsG0180006138.01.T01:intron 20.0%
!! ACCTCAAAAATATATATGAA+GGG + Chr1:100603064-100603083 MsG0180006138.01.T01:intron 20.0%
!! AGAATATCTTAAAATAAGCA+TGG + Chr1:100604210-100604229 MsG0180006138.01.T01:intron 20.0%
!! ATCATTTGTAATCAAATGAA+TGG + Chr1:100602710-100602729 MsG0180006138.01.T01:intron 20.0%
!! ATGGTAAAAACTTCAAAAAT+AGG + Chr1:100604500-100604519 MsG0180006138.01.T01:intron 20.0%
!! ATTCATTTCTTAGATATGTT+TGG - Chr1:100603224-100603243 None:intergenic 20.0%
!! CATATTTAACAATAATGCAA+GGG + Chr1:100604607-100604626 MsG0180006138.01.T01:intron 20.0%
!! CTATCTCAAGATTTAATAAA+TGG + Chr1:100604100-100604119 MsG0180006138.01.T01:intron 20.0%
!! CTCTTCAAATTAAAAAGAAA+TGG + Chr1:100604481-100604500 MsG0180006138.01.T01:intron 20.0%
!! CTTAAAAAAAAATGGAAAAG+GGG + Chr1:100602979-100602998 MsG0180006138.01.T01:intron 20.0%
!! GAAAATAGAAAATGAAAGAA+GGG - Chr1:100601594-100601613 None:intergenic 20.0%
!! GATAAATATACAAAATTCAG+AGG + Chr1:100605149-100605168 MsG0180006138.01.T01:three_prime_UTR 20.0%
!! TAACAATTTACAATAGTAGA+AGG + Chr1:100602423-100602442 MsG0180006138.01.T01:intron 20.0%
!! TCAAATTAATTCTTATGTCT+AGG + Chr1:100601954-100601973 MsG0180006138.01.T01:intron 20.0%
!! TCATATTTAACAATAATGCA+AGG + Chr1:100604606-100604625 MsG0180006138.01.T01:intron 20.0%
!! TGAAAATAGAAAATGAAAGA+AGG - Chr1:100601595-100601614 None:intergenic 20.0%
!! TGAAAGAATTGATATGAAAT+TGG - Chr1:100601365-100601384 None:intergenic 20.0%
!! TGACTATTTACAGAAAAAAA+AGG - Chr1:100605086-100605105 None:intergenic 20.0%
!! TTAATTTAAATGCACATTCA+GGG + Chr1:100601992-100602011 MsG0180006138.01.T01:intron 20.0%
!! TTGAACTAATAAACACTTTA+CGG + Chr1:100603111-100603130 MsG0180006138.01.T01:intron 20.0%
!!! ACAATTTTATTTTGGTAACA+GGG + Chr1:100602229-100602248 MsG0180006138.01.T01:intron 20.0%
!!! ACCATTTTTTTTTTAAAACC+AGG - Chr1:100605200-100605219 None:intergenic 20.0%
!!! ACTATATTTTGCTTTTACTT+TGG - Chr1:100603366-100603385 None:intergenic 20.0%
!!! ATGCTTATTTTAAGATATTC+TGG - Chr1:100604211-100604230 None:intergenic 20.0%
!!! TCCTGGTTTTAAAAAAAAAA+TGG + Chr1:100605196-100605215 MsG0180006138.01.T01:three_prime_UTR 20.0%
!!! TCTGATACACAATTTTATTT+TGG + Chr1:100602221-100602240 MsG0180006138.01.T01:intron 20.0%
!!! TTAATTTGATCTTTCAATGA+AGG - Chr1:100601767-100601786 None:intergenic 20.0%
!!! TTATTTTATTGAATTTGGTG+AGG + Chr1:100602591-100602610 MsG0180006138.01.T01:intron 20.0%
!!! TTCTCTTATTTGAGTTTAAA+GGG - Chr1:100603634-100603653 None:intergenic 20.0%
!!! TTTAATTTAAATGCACATTC+AGG + Chr1:100601991-100602010 MsG0180006138.01.T01:intron 20.0%
!!! TTTTCAGTCATTTGAATTTT+TGG + Chr1:100604688-100604707 MsG0180006138.01.T01:intron 20.0%
!!! TTTTTTTCAGAGAGAAAAAA+GGG - Chr1:100604353-100604372 None:intergenic 20.0%
!!! TTTTTTTTTTAAAACCAGGA+AGG - Chr1:100605196-100605215 None:intergenic 20.0%
!!! TTTTTTTTTTTGCAAACAGA+AGG + Chr1:100605049-100605068 MsG0180006138.01.T01:three_prime_UTR 20.0%
! AAAGAATAATAAACGAGGTT+TGG + Chr1:100602279-100602298 MsG0180006138.01.T01:CDS 25.0%
! AAATGTATGAGAATTGATGA+TGG + Chr1:100604902-100604921 MsG0180006138.01.T01:exon 25.0%
! AAGAATAATAAACGAGGTTT+GGG + Chr1:100602280-100602299 MsG0180006138.01.T01:CDS 25.0%
! ACAATCAACTCTTCTAATAT+AGG + Chr1:100601546-100601565 MsG0180006138.01.T01:CDS 25.0%
! ACCTAAAATAAGAAAACCTT+CGG - Chr1:100602515-100602534 None:intergenic 25.0%
! AGATATACTTTGTTGACATA+TGG + Chr1:100602677-100602696 MsG0180006138.01.T01:intron 25.0%
! ATAATATGATATCCGTGAAA+GGG - Chr1:100604639-100604658 None:intergenic 25.0%
! CAATCAACTCTTCTAATATA+GGG + Chr1:100601547-100601566 MsG0180006138.01.T01:CDS 25.0%
! GAAGTAAAGTGAATTAAAAG+AGG + Chr1:100603743-100603762 MsG0180006138.01.T01:intron 25.0%
! GACCTCAAAAATATATATGA+AGG + Chr1:100603063-100603082 MsG0180006138.01.T01:intron 25.0%
! TAAGATTGTAGGTTAATTGA+TGG + Chr1:100602066-100602085 MsG0180006138.01.T01:intron 25.0%
! TAATAAATGGCATAACTGTA+AGG + Chr1:100604113-100604132 MsG0180006138.01.T01:intron 25.0%
! TACAAGAGAAATACTGAAAT+AGG - Chr1:100602165-100602184 None:intergenic 25.0%
! TATAATATGATATCCGTGAA+AGG - Chr1:100604640-100604659 None:intergenic 25.0%
! TCTAAATCATTCTTAATGTC+AGG - Chr1:100604070-100604089 None:intergenic 25.0%
! TCTTATACTAATTTAACCCA+AGG - Chr1:100602051-100602070 None:intergenic 25.0%
! TGACATTAAGAATGATTTAG+AGG + Chr1:100604069-100604088 MsG0180006138.01.T01:intron 25.0%
! TGACTGAAAATGAAAAACAA+CGG - Chr1:100604678-100604697 None:intergenic 25.0%
! TTCTACCATCTCTATTATAA+AGG - Chr1:100603926-100603945 None:intergenic 25.0%
!! AATGTATGAGAATTGATGAT+GGG + Chr1:100604903-100604922 MsG0180006138.01.T01:exon 25.0%
!! ATCAATTCTCATACATTTTC+AGG - Chr1:100604900-100604919 None:intergenic 25.0%
!! CTGTTCAACAATTTCTTTTA+AGG + Chr1:100601401-100601420 MsG0180006138.01.T01:intron 25.0%
!! CTTTTATATTGAACAACTCT+AGG + Chr1:100604270-100604289 MsG0180006138.01.T01:intron 25.0%
!! GTTCTCTTATTTGAGTTTAA+AGG - Chr1:100603635-100603654 None:intergenic 25.0%
!!! AAACCATATATTTGCTATAC+AGG + Chr1:100602912-100602931 MsG0180006138.01.T01:intron 25.0%
!!! AATTTCTTTTAAGGCTTCAA+GGG + Chr1:100601410-100601429 MsG0180006138.01.T01:intron 25.0%
!!! CACAATTTTATTTTGGTAAC+AGG + Chr1:100602228-100602247 MsG0180006138.01.T01:intron 25.0%
!!! CTTTTTAATTTGAAGAGAAG+AGG - Chr1:100604478-100604497 None:intergenic 25.0%
!!! GTTTTTTTCAGAGAGAAAAA+AGG - Chr1:100604354-100604373 None:intergenic 25.0%
!!! TGAAAACAAATCTTTTTGAG+AGG - Chr1:100603776-100603795 None:intergenic 25.0%
!!! TGTATTCTGAAACAGTTTTA+GGG + Chr1:100602181-100602200 MsG0180006138.01.T01:intron 25.0%
!!! TTGTATTCTGAAACAGTTTT+AGG + Chr1:100602180-100602199 MsG0180006138.01.T01:intron 25.0%
!!! TTTTTTCAGAGAGAAAAAAG+GGG - Chr1:100604352-100604371 None:intergenic 25.0%
AAACACTTTACGGTAACTAT+AGG + Chr1:100603121-100603140 MsG0180006138.01.T01:intron 30.0%
AACATAGAGGTGAAAATAAG+AGG + Chr1:100603423-100603442 MsG0180006138.01.T01:intron 30.0%
AATTGCATATTTAGTAGCCT+TGG + Chr1:100602031-100602050 MsG0180006138.01.T01:intron 30.0%
ACAAACACATCATAACATAG+AGG + Chr1:100603410-100603429 MsG0180006138.01.T01:intron 30.0%
ACTAAGAAAGTGAATGCAAA+AGG - Chr1:100604954-100604973 None:intergenic 30.0%
AGTCCAATTGTTATAGACAA+AGG + Chr1:100604023-100604042 MsG0180006138.01.T01:intron 30.0%
AGTCGTATTATAAATCTACG+AGG + Chr1:100602809-100602828 MsG0180006138.01.T01:intron 30.0%
ATATACAAAATTCAGAGGGA+AGG + Chr1:100605154-100605173 MsG0180006138.01.T01:three_prime_UTR 30.0%
ATCCAATTTACTCTTCTTAC+AGG - Chr1:100603996-100604015 None:intergenic 30.0%
ATTGAACAACTCTAGGTAAT+TGG + Chr1:100604277-100604296 MsG0180006138.01.T01:intron 30.0%
ATTGCATATTTAGTAGCCTT+GGG + Chr1:100602032-100602051 MsG0180006138.01.T01:intron 30.0%
CAACCTGTATAGCAAATATA+TGG - Chr1:100602918-100602937 None:intergenic 30.0%
CATGTGTATGTTTCACTAAA+GGG + Chr1:100604431-100604450 MsG0180006138.01.T01:intron 30.0%
CGTGTAAAGAATAATAAACG+AGG + Chr1:100602274-100602293 MsG0180006138.01.T01:CDS 30.0%
GATATCAACTTGAATTACTG+CGG + Chr1:100604710-100604729 MsG0180006138.01.T01:intron 30.0%
GTAGATTTATAATACGACTC+AGG - Chr1:100602808-100602827 None:intergenic 30.0%
GTCCAATTGTTATAGACAAA+GGG + Chr1:100604024-100604043 MsG0180006138.01.T01:intron 30.0%
GTCGTATTATAAATCTACGA+GGG + Chr1:100602810-100602829 MsG0180006138.01.T01:intron 30.0%
GTGTTTGTAGTTTCTAAACT+TGG - Chr1:100603398-100603417 None:intergenic 30.0%
GTTTGTCATACAAAGTGATA+GGG + Chr1:100603691-100603710 MsG0180006138.01.T01:intron 30.0%
TAACTATAGGTGTGCATTAA+AGG + Chr1:100603134-100603153 MsG0180006138.01.T01:intron 30.0%
TAATATGATATCCGTGAAAG+GGG - Chr1:100604638-100604657 None:intergenic 30.0%
TCATGTGTATGTTTCACTAA+AGG + Chr1:100604430-100604449 MsG0180006138.01.T01:intron 30.0%
TCCAAATTTAATGCCCTTAA+AGG - Chr1:100601927-100601946 None:intergenic 30.0%
TGAAAATAAGAGGACCTAAA+GGG + Chr1:100603433-100603452 MsG0180006138.01.T01:intron 30.0%
TGTAAGAAGAGTAAATTGGA+TGG + Chr1:100603995-100604014 MsG0180006138.01.T01:intron 30.0%
TGTTTATATCAGTTCTCCTT+AGG - Chr1:100602096-100602115 None:intergenic 30.0%
TTTCACATTTGTCATTCTGA+TGG + Chr1:100604382-100604401 MsG0180006138.01.T01:intron 30.0%
TTTGTCATACAAAGTGATAG+GGG + Chr1:100603692-100603711 MsG0180006138.01.T01:intron 30.0%
! ATAAAGATGAGTTGAATGAG+TGG + Chr1:100603837-100603856 MsG0180006138.01.T01:intron 30.0%
! ATATCTGTCTCTAAGAACAA+AGG + Chr1:100602748-100602767 MsG0180006138.01.T01:intron 30.0%
! ATTTGATTTCCTGTTGTTGA+TGG + Chr1:100604740-100604759 MsG0180006138.01.T01:intron 30.0%
! GTTTTACGATGTATTTTCAG+TGG + Chr1:100601432-100601451 MsG0180006138.01.T01:intron 30.0%
! TGGTATAGTACTTGGTAATT+AGG + Chr1:100602621-100602640 MsG0180006138.01.T01:intron 30.0%
! TTTATTGAATTTGGTGAGGT+GGG + Chr1:100602595-100602614 MsG0180006138.01.T01:intron 30.0%
! TTTTCGATTCTTCTGTACAA+TGG + Chr1:100605127-100605146 MsG0180006138.01.T01:three_prime_UTR 30.0%
!! AAAGTTTGCTTTTGTTCTCA+AGG + Chr1:100602384-100602403 MsG0180006138.01.T01:intron 30.0%
!! AAGTTTGCTTTTGTTCTCAA+GGG + Chr1:100602385-100602404 MsG0180006138.01.T01:intron 30.0%
!! ACCTTTAAGGGCATTAAATT+TGG + Chr1:100601923-100601942 MsG0180006138.01.T01:intron 30.0%
!! ATATTTGCTATACAGGTTGA+TGG + Chr1:100602919-100602938 MsG0180006138.01.T01:intron 30.0%
!! CTGAGTTTTTCATTTGGAAT+TGG + Chr1:100602473-100602492 MsG0180006138.01.T01:intron 30.0%
!! GCCCTTCATATATATTTTTG+AGG - Chr1:100603068-100603087 None:intergenic 30.0%
!! TTTTATTGAATTTGGTGAGG+TGG + Chr1:100602594-100602613 MsG0180006138.01.T01:intron 30.0%
!!! CAATTTCTTTTAAGGCTTCA+AGG + Chr1:100601409-100601428 MsG0180006138.01.T01:intron 30.0%
!!! GTATTCTGAAACAGTTTTAG+GGG + Chr1:100602182-100602201 MsG0180006138.01.T01:intron 30.0%
!!! GTGTATCAGAATTTTTTGCA+AGG - Chr1:100602211-100602230 None:intergenic 30.0%
AAACCAGCTTTGCTTATGTT+TGG + Chr1:100602875-100602894 MsG0180006138.01.T01:intron 35.0%
AACCAGCTTTGCTTATGTTT+GGG + Chr1:100602876-100602895 MsG0180006138.01.T01:intron 35.0%
AATTGAAGTCCATCAACAAC+AGG - Chr1:100604752-100604771 None:intergenic 35.0%
ACTATCCTGTATTGAATCAG+TGG + Chr1:100604576-100604595 MsG0180006138.01.T01:intron 35.0%
AGCAGATATAGTGAAGAAGA+AGG + Chr1:100602303-100602322 MsG0180006138.01.T01:CDS 35.0%
CACCTGTAAGAAGAGTAAAT+TGG + Chr1:100603991-100604010 MsG0180006138.01.T01:intron 35.0%
CTACTAAATATGCAATTCCC+TGG - Chr1:100602028-100602047 None:intergenic 35.0%
CTATATCCTGTAAGTATCCT+GGG - Chr1:100605027-100605046 None:intergenic 35.0%
CTATCCTGTATTGAATCAGT+GGG + Chr1:100604577-100604596 MsG0180006138.01.T01:intron 35.0%
CTATCTATCTCTATCTCTCT+TGG - Chr1:100603291-100603310 None:intergenic 35.0%
CTCCCTTTGTCTATAACAAT+TGG - Chr1:100604029-100604048 None:intergenic 35.0%
CTCTTCTAATATAGGGTTTC+AGG + Chr1:100601554-100601573 MsG0180006138.01.T01:CDS 35.0%
GAAAATAAGAGGACCTAAAG+GGG + Chr1:100603434-100603453 MsG0180006138.01.T01:intron 35.0%
GGTAGCCTTTATAATAGAGA+TGG + Chr1:100603918-100603937 MsG0180006138.01.T01:intron 35.0%
GGTTTGTCATACAAAGTGAT+AGG + Chr1:100603690-100603709 MsG0180006138.01.T01:intron 35.0%
GTGAAAATAAGAGGACCTAA+AGG + Chr1:100603432-100603451 MsG0180006138.01.T01:intron 35.0%
TATTTATCTGTCTCCTACCT+TGG + Chr1:100601226-100601245 MsG0180006138.01.T01:CDS 35.0%
TCTCACATTTGTAGTACCTT+GGG + Chr1:100603669-100603688 MsG0180006138.01.T01:intron 35.0%
TGAAAAGAAGATGCAAGAGA+AGG + Chr1:100604842-100604861 MsG0180006138.01.T01:CDS 35.0%
TTCTCACATTTGTAGTACCT+TGG + Chr1:100603668-100603687 MsG0180006138.01.T01:intron 35.0%
TTTGTCATTCTGATGGTACT+TGG + Chr1:100604389-100604408 MsG0180006138.01.T01:intron 35.0%
! AAGCCAAAGCACTTTCTAAA+CGG + Chr1:100604799-100604818 MsG0180006138.01.T01:CDS 35.0%
! ACGATGTATTTTCAGTGGTT+TGG + Chr1:100601437-100601456 MsG0180006138.01.T01:intron 35.0%
! GAGAATCTAGAGAGGTTTTA+TGG + Chr1:100603009-100603028 MsG0180006138.01.T01:intron 35.0%
! GATGGACTTCAATTGATTTC+AGG + Chr1:100604758-100604777 MsG0180006138.01.T01:intron 35.0%
! TTATTGAATTTGGTGAGGTG+GGG + Chr1:100602596-100602615 MsG0180006138.01.T01:intron 35.0%
!! ATCTAGAGAGGTTTTATGGA+AGG + Chr1:100603013-100603032 MsG0180006138.01.T01:intron 35.0%
!!! GCCGAAGGTTTTCTTATTTT+AGG + Chr1:100602511-100602530 MsG0180006138.01.T01:intron 35.0%
!!! TTTTAAAACCAGGAAGGACA+TGG - Chr1:100605190-100605209 None:intergenic 35.0%
AAATTTGCAATAGCTGCCGA+AGG + Chr1:100602496-100602515 MsG0180006138.01.T01:intron 40.0%
AAGGTTGTGAAACCTGATCA+CGG + Chr1:100602322-100602341 MsG0180006138.01.T01:CDS 40.0%
AAGTGCAGAAGTGGCAATAT+TGG - Chr1:100603509-100603528 None:intergenic 40.0%
ACGATACTATCATGTCTGTG+CGG + Chr1:100601820-100601839 MsG0180006138.01.T01:intron 40.0%
AGTGCAGAAGTGGCAATATT+GGG - Chr1:100603508-100603527 None:intergenic 40.0%
ATGCCCAAAACACCATAAGT+CGG - Chr1:100603951-100603970 None:intergenic 40.0%
ATTCAGGGACTAATTTGACC+AGG + Chr1:100602007-100602026 MsG0180006138.01.T01:intron 40.0%
CACTTTGTATGACAAACCCA+AGG - Chr1:100603688-100603707 None:intergenic 40.0%
CCAGGATACTTACAGGATAT+AGG + Chr1:100605025-100605044 MsG0180006138.01.T01:three_prime_UTR 40.0%
CCTATATCCTGTAAGTATCC+TGG - Chr1:100605028-100605047 None:intergenic 40.0%
CTTGTGTAAATCCATAGCCA+TGG + Chr1:100601497-100601516 MsG0180006138.01.T01:CDS 40.0%
GAGTCTGCTACAAAGATCAA+TGG - Chr1:100604142-100604161 None:intergenic 40.0%
GCAAGATAGAGAATCTAGAG+AGG + Chr1:100603001-100603020 MsG0180006138.01.T01:intron 40.0%
GGCAATATTGGGAGTTCTTA+TGG - Chr1:100603497-100603516 None:intergenic 40.0%
GTTAATTGATGGAACGCCTA+AGG + Chr1:100602077-100602096 MsG0180006138.01.T01:intron 40.0%
GTTTGTATGAAGTGCAGAAG+TGG - Chr1:100603518-100603537 None:intergenic 40.0%
TAAACTCGACGTTTCTTCCA+TGG - Chr1:100601517-100601536 None:intergenic 40.0%
TACCTGCTTATTGTCTCCTT+TGG - Chr1:100602356-100602375 None:intergenic 40.0%
TGTAGCAGACTCTACATAGT+GGG + Chr1:100604150-100604169 MsG0180006138.01.T01:intron 40.0%
TTATAGACAAAGGGAGACCA+AGG + Chr1:100604033-100604052 MsG0180006138.01.T01:intron 40.0%
TTCAGAGAGAAAAAAGGGGA+GGG - Chr1:100604348-100604367 None:intergenic 40.0%
TTCAGAGGGAAGGTAATGAT+AGG + Chr1:100605164-100605183 MsG0180006138.01.T01:three_prime_UTR 40.0%
TTCAGGGACTAATTTGACCA+GGG + Chr1:100602008-100602027 MsG0180006138.01.T01:intron 40.0%
TTCTTTACACGAGTTTCCAC+AGG - Chr1:100602265-100602284 None:intergenic 40.0%
TTGTAGCAGACTCTACATAG+TGG + Chr1:100604149-100604168 MsG0180006138.01.T01:intron 40.0%
TTTCAAAGTCGTGTGCAAGT+TGG + Chr1:100604985-100605004 MsG0180006138.01.T01:three_prime_UTR 40.0%
TTTCAGAGAGAAAAAAGGGG+AGG - Chr1:100604349-100604368 None:intergenic 40.0%
! AAGAAGCATGGTTGGAAAGA+AGG + Chr1:100601688-100601707 MsG0180006138.01.T01:CDS 40.0%
! AATCCCGACTTATGGTGTTT+TGG + Chr1:100603944-100603963 MsG0180006138.01.T01:intron 40.0%
! AGAAGCATGGTTGGAAAGAA+GGG + Chr1:100601689-100601708 MsG0180006138.01.T01:CDS 40.0%
! AGACTCTACATAGTGGGAAA+AGG + Chr1:100604156-100604175 MsG0180006138.01.T01:intron 40.0%
! AGCCAAAGCACTTTCTAAAC+GGG + Chr1:100604800-100604819 MsG0180006138.01.T01:CDS 40.0%
! ATCCCGACTTATGGTGTTTT+GGG + Chr1:100603945-100603964 MsG0180006138.01.T01:intron 40.0%
! GCTTTTGTTCTCAAGGGTTT+TGG + Chr1:100602391-100602410 MsG0180006138.01.T01:intron 40.0%
! GTCAGGTCTATCATTTTCCT+TGG - Chr1:100604053-100604072 None:intergenic 40.0%
! TATTGAATTTGGTGAGGTGG+GGG + Chr1:100602597-100602616 MsG0180006138.01.T01:intron 40.0%
! TGTTTTCCCAGGATACTTAC+AGG + Chr1:100605018-100605037 MsG0180006138.01.T01:three_prime_UTR 40.0%
! TTAGGTAGTACTAGCTTGTC+AGG + Chr1:100602529-100602548 MsG0180006138.01.T01:intron 40.0%
! TTGCGACAATCTTTAGAAGC+AGG + Chr1:100603330-100603349 MsG0180006138.01.T01:intron 40.0%
!! ACGGTGCTGAGTTTTTCATT+TGG + Chr1:100602467-100602486 MsG0180006138.01.T01:intron 40.0%
!! AGCTTTTGAAGAAGCATGGT+TGG + Chr1:100601680-100601699 MsG0180006138.01.T01:intron 40.0%
!! CTGTAGCTTTTGAAGAAGCA+TGG + Chr1:100601676-100601695 MsG0180006138.01.T01:intron 40.0%
ACAGGGTAGATTAGAACCTG+TGG + Chr1:100602246-100602265 MsG0180006138.01.T01:intron 45.0%
ATGGGGGAAGCTACCTTTAA+GGG + Chr1:100601911-100601930 MsG0180006138.01.T01:intron 45.0%
CGATACTATCATGTCTGTGC+GGG + Chr1:100601821-100601840 MsG0180006138.01.T01:intron 45.0%
CTCCAAAGGAGACAATAAGC+AGG + Chr1:100602351-100602370 MsG0180006138.01.T01:CDS 45.0%
CTCCCAAACATAAGCAAAGC+TGG - Chr1:100602881-100602900 None:intergenic 45.0%
CTGACATTGTATGCCCCTTT+AGG - Chr1:100603450-100603469 None:intergenic 45.0%
CTGCTTATTGTCTCCTTTGG+AGG - Chr1:100602353-100602372 None:intergenic 45.0%
GATGGTAGAATCCCGACTTA+TGG + Chr1:100603936-100603955 MsG0180006138.01.T01:intron 45.0%
TCAGAGAGAAAAAAGGGGAG+GGG - Chr1:100604347-100604366 None:intergenic 45.0%
TCCTACCTTGGTTAAGGAGA+GGG + Chr1:100601238-100601257 MsG0180006138.01.T01:CDS 45.0%
TCTGTCTCCTACCTTGGTTA+AGG + Chr1:100601232-100601251 MsG0180006138.01.T01:CDS 45.0%
TGCCCAAAACACCATAAGTC+GGG - Chr1:100603950-100603969 None:intergenic 45.0%
! CGACAATCTTTAGAAGCAGG+TGG + Chr1:100603333-100603352 MsG0180006138.01.T01:intron 45.0%
! GCGCTTTCTTTAGAGAGTTC+TGG + Chr1:100604874-100604893 MsG0180006138.01.T01:CDS 45.0%
!! CACCCGTTTAGAAAGTGCTT+TGG - Chr1:100604805-100604824 None:intergenic 45.0%
!! CTGTCCCACTGATTCAATAC+AGG - Chr1:100604584-100604603 None:intergenic 45.0%
!! AAATTCAATAAAATAAAATA+AGG - Chr1:100602587-100602606 None:intergenic 5.0%
!! AATTAAAAATATATTTAAAG+TGG + Chr1:100603539-100603558 MsG0180006138.01.T01:intron 5.0%
!!! ATTAAAAATATATTTAAAGT+GGG + Chr1:100603540-100603559 MsG0180006138.01.T01:intron 5.0%
!!! TTATTTTATTTTATTGAATT+TGG + Chr1:100602586-100602605 MsG0180006138.01.T01:intron 5.0%
ATGATAGGCCATGTCCTTCC+TGG + Chr1:100605179-100605198 MsG0180006138.01.T01:three_prime_UTR 50.0%
CAAGGGAAAAGCCCCTTTCA+CGG + Chr1:100604624-100604643 MsG0180006138.01.T01:intron 50.0%
CAGAGAGAAAAAAGGGGAGG+GGG - Chr1:100604346-100604365 None:intergenic 50.0%
CATGGTTGGAAAGAAGGGAC+TGG + Chr1:100601694-100601713 MsG0180006138.01.T01:CDS 50.0%
CGACGTTTCTTCCATGGCTA+TGG - Chr1:100601511-100601530 None:intergenic 50.0%
CTCCTACCTTGGTTAAGGAG+AGG + Chr1:100601237-100601256 MsG0180006138.01.T01:CDS 50.0%
CTTCTCCCTCTCCTTAACCA+AGG - Chr1:100601246-100601265 None:intergenic 50.0%
GAAGAGAAGAGACAGAGAGG+AGG + Chr1:100601262-100601281 MsG0180006138.01.T01:CDS 50.0%
GATCACGGTGATTCCTCCAA+AGG + Chr1:100602337-100602356 MsG0180006138.01.T01:CDS 50.0%
GATGGGGGAAGCTACCTTTA+AGG + Chr1:100601910-100601929 MsG0180006138.01.T01:intron 50.0%
GGAGAAGAGAAGAGACAGAG+AGG + Chr1:100601259-100601278 MsG0180006138.01.T01:CDS 50.0%
TCCCTCTCCTTAACCAAGGT+AGG - Chr1:100601242-100601261 None:intergenic 50.0%
TTGGAGGAATCACCGTGATC+AGG - Chr1:100602337-100602356 None:intergenic 50.0%
! ACGCCTTCGATCAGAAGTGT+CGG + Chr1:100601870-100601889 MsG0180006138.01.T01:intron 50.0%
! CTTCTGATCGAAGGCGTGTT+CGG - Chr1:100601867-100601886 None:intergenic 50.0%
! GTGTGCAAGTTGGATCTCGA+AGG + Chr1:100604995-100605014 MsG0180006138.01.T01:three_prime_UTR 50.0%
! TGGTCTTGGAATCTCTGAGC+AGG + Chr1:100601714-100601733 MsG0180006138.01.T01:CDS 50.0%
!! GTGGGGGTTGGTATAGTACT+TGG + Chr1:100602613-100602632 MsG0180006138.01.T01:intron 50.0%
!! TGCCTTTGAAGTCCCTGGAT+GGG + Chr1:100601893-100601912 MsG0180006138.01.T01:intron 50.0%
!! TGGAAAGAAGGGACTGGTCT+TGG + Chr1:100601700-100601719 MsG0180006138.01.T01:CDS 50.0%
!!! GATCTCGAAGGTGTTTTCCC+AGG + Chr1:100605007-100605026 MsG0180006138.01.T01:three_prime_UTR 50.0%
AAAGGTAGCTTCCCCCATCC+AGG - Chr1:100601909-100601928 None:intergenic 55.0%
AAGGTAGCTTCCCCCATCCA+GGG - Chr1:100601908-100601927 None:intergenic 55.0%
GGGGTGACGTTGCACAATAG+TGG + Chr1:100603560-100603579 MsG0180006138.01.T01:intron 55.0%
! GAATTTGGTGAGGTGGGGGT+TGG + Chr1:100602601-100602620 MsG0180006138.01.T01:intron 55.0%
! GCACCGACACTTCTGATCGA+AGG - Chr1:100601876-100601895 None:intergenic 55.0%
!! CCTTTGAAGTCCCTGGATGG+GGG + Chr1:100601895-100601914 MsG0180006138.01.T01:intron 55.0%
!! GCCTTTGAAGTCCCTGGATG+GGG + Chr1:100601894-100601913 MsG0180006138.01.T01:intron 55.0%
!! GTGCCTTTGAAGTCCCTGGA+TGG + Chr1:100601892-100601911 MsG0180006138.01.T01:intron 55.0%
CCCCCATCCAGGGACTTCAA+AGG - Chr1:100601898-100601917 None:intergenic 60.0%
!! GTCGGTGCCTTTGAAGTCCC+TGG + Chr1:100601888-100601907 MsG0180006138.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 100601222 100605225 100601222 ID=MsG0180006138.01;Name=MsG0180006138.01
Chr1 mRNA 100601222 100605225 100601222 ID=MsG0180006138.01.T01;Parent=MsG0180006138.01;Name=MsG0180006138.01.T01;_AED=0.40;_eAED=0.40;_QI=0|1|0.8|1|0.75|0.8|5|314|169
Chr1 exon 100601222 100601337 100601222 ID=MsG0180006138.01.T01:exon:11552;Parent=MsG0180006138.01.T01
Chr1 exon 100601491 100601575 100601491 ID=MsG0180006138.01.T01:exon:11553;Parent=MsG0180006138.01.T01
Chr1 exon 100601682 100601735 100601682 ID=MsG0180006138.01.T01:exon:11554;Parent=MsG0180006138.01.T01
Chr1 exon 100602250 100602372 100602250 ID=MsG0180006138.01.T01:exon:11555;Parent=MsG0180006138.01.T01
Chr1 exon 100604780 100605225 100604780 ID=MsG0180006138.01.T01:exon:11556;Parent=MsG0180006138.01.T01
Chr1 CDS 100601222 100601337 100601222 ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1 CDS 100601491 100601575 100601491 ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1 CDS 100601682 100601735 100601682 ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1 CDS 100602250 100602372 100602250 ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1 CDS 100604780 100604911 100604780 ID=MsG0180006138.01.T01:cds;Parent=MsG0180006138.01.T01
Chr1 three_prime_UTR 100604912 100605225 100604912 ID=MsG0180006138.01.T01:three_prime_utr;Parent=MsG0180006138.01.T01
Gene Sequence

>MsG0180006138.01.T01

TTTTTATTTATCTGTCTCCTACCTTGGTTAAGGAGAGGGAGAAGAGAAGAGACAGAGAGGAGGAGAAAAGAAAAAGAAGAACACGACACGACAAGAAAAGCTCTGATCAATTCGATATTAAGCTTGTGTAAATCCATAGCCATGGAAGAAACGTCGAGTTTAGCAACAACAACAATCAACTCTTCTAATATAGGGTTTCAGCTTTTGAAGAAGCATGGTTGGAAAGAAGGGACTGGTCTTGGAATCTCTGAGCAGGGTAGATTAGAACCTGTGGAAACTCGTGTAAAGAATAATAAACGAGGTTTGGGAGCAGATATAGTGAAGAAGAAGGTTGTGAAACCTGATCACGGTGATTCCTCCAAAGGAGACAATAAGCAGGAACAGTTGTCTCAAAAGAAAGCCAAAGCACTTTCTAAACGGGTGAGAAAGATGCAAGAGATTGAAAAGAAGATGCAAGAGAAGGAATTCGAGCGCGCTTTCTTTAGAGAGTTCTGGCCTGAAAATGTATGA

Protein sequence

>MsG0180006138.01.T01

FLFICLLPWLRRGRREETERRRKEKEEHDTTRKALINSILSLCKSIAMEETSSLATTTINSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADIVKKKVVKPDHGDSSKGDNKQEQLSQKKAKALSKRVRKMQEIEKKMQEKEFERAFFREFWPENV*