AlfalfaGEDB | MsG0080047791.01

M. sativa cultivar ZhongmuNo.1 / MsG0080047791.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047791.01.T01	GAU44650.1	92.683	41	3	0	96	136	21	61	3.76E-17	81.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047791.01.T01	A0A2Z6P658	92.683	41	3	0	96	136	21	61	1.79e-17	81.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047791.01	MsG0080048152.01	0.807971	3.895037e-50	2.199810e-47
MsG0080047791.01	MsG0080049011.01	0.803767	2.979517e-49	1.509981e-46
MsG0080047791.01	MsG0180000205.01	0.820950	5.232031e-53	4.199503e-50
MsG0080047791.01	MsG0180000355.01	0.808080	3.691071e-50	2.090697e-47
MsG0080047791.01	MsG0180000384.01	0.810705	1.009092e-50	6.126370e-48
MsG0080047791.01	MsG0180000544.01	-0.807709	4.427668e-50	2.483555e-47
MsG0080047791.01	MsG0180000568.01	0.812699	3.718215e-51	2.380423e-48
MsG0080047791.01	MsG0180000614.01	0.806257	8.982310e-50	4.853045e-47
MsG0080047791.01	MsG0180000982.01	0.823755	1.167600e-53	1.014511e-50
MsG0080047791.01	MsG0180001118.01	0.826285	2.950766e-54	2.755265e-51

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047791.01.T01	MTR_4g134900	81.818	44	8	0	93	136	20	63	1.10e-17	72.4
MsG0080047791.01.T01	MTR_4g134900	75.000	44	7	1	1	44	1	40	4.99e-15	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080047791.01.T01	AT1G09794	63.636	44	12	1	1	44	1	40	9.25e-12	57.0

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Find 16 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTTTGAGAAAATGGGGC+AGG	0.531461	contig103end:+17202	None:intergenic
AAGTTTCTTATAATACTGCT+AGG	0.583345	contig103end:+18184	MsG0080047791.01.T01:CDS
ACAGTCTGACAGGAATGAAG+AGG	0.637824	contig103end:-17516	None:intergenic
ACTCACTGTGCTTCGCTCTC+TGG	0.391788	contig103end:+18264	MsG0080047791.01.T01:CDS
AGTATAATTCATCACTTACT+TGG	0.421958	contig103end:-18304	None:intergenic
ATAGCTTGGTTGGTGAGTTA+AGG	0.376035	contig103end:-18112	None:intergenic
ATGTTAGTGTTAATATAATT+GGG	0.403039	contig103end:+17478	MsG0080047791.01.T01:intron
CAAAGAGCCTTGCAAGAAAG+AGG	0.485000	contig103end:+17229	MsG0080047791.01.T01:CDS
CATTGTTGAAACAAAACTGT+TGG	0.465328	contig103end:+18145	MsG0080047791.01.T01:CDS
CCAGCAATTCAATAACTTTA+AGG	0.154340	contig103end:-18209	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTAGAAAACTTTCTTCTG+CGG	+	contig103end:17696-17715	MsG0080047791.01.T01:intron	30.0%
CATTGTTGAAACAAAACTGT+TGG	+	contig103end:18145-18164	MsG0080047791.01.T01:CDS	30.0%
CCAGCAATTCAATAACTTTA+AGG	-	contig103end:18212-18231	None:intergenic	30.0%
CCTTAAAGTTATTGAATTGC+TGG	+	contig103end:18209-18228	MsG0080047791.01.T01:CDS	30.0%
ACAACGCCAATATTAGAAAC+TGG	+	contig103end:17993-18012	MsG0080047791.01.T01:intron	35.0%
CAAATGATGCAAATGTCAGA+AGG	+	contig103end:17929-17948	MsG0080047791.01.T01:intron	35.0%
CTTCTGACATTTGCATCATT+TGG	-	contig103end:17931-17950	None:intergenic	35.0%
TATGCCGGAATAGAGTTTAA+TGG	-	contig103end:17637-17656	None:intergenic	35.0%
TCCACCATTAAACTCTATTC+CGG	+	contig103end:17630-17649	MsG0080047791.01.T01:intron	35.0%
GCACAGTGGTATCATCTAAA+TGG	+	contig103end:17953-17972	MsG0080047791.01.T01:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
contig103end	gene	17215	18311	17215	ID=MsG0080047791.01;Name=MsG0080047791.01
contig103end	mRNA	17215	18311	17215	ID=MsG0080047791.01.T01;Parent=MsG0080047791.01;Name=MsG0080047791.01.T01;_AED=0.39;_eAED=0.61;_QI=0\|0\|0\|1\|0\|0\|3\|0\|136
contig103end	exon	17215	17351	17215	ID=MsG0080047791.01.T01:exon:2952;Parent=MsG0080047791.01.T01
contig103end	exon	17485	17528	17485	ID=MsG0080047791.01.T01:exon:2951;Parent=MsG0080047791.01.T01
contig103end	exon	18082	18311	18082	ID=MsG0080047791.01.T01:exon:2950;Parent=MsG0080047791.01.T01
contig103end	CDS	17215	17351	17215	ID=MsG0080047791.01.T01:cds;Parent=MsG0080047791.01.T01
contig103end	CDS	17485	17528	17485	ID=MsG0080047791.01.T01:cds;Parent=MsG0080047791.01.T01
contig103end	CDS	18082	18311	18082	ID=MsG0080047791.01.T01:cds;Parent=MsG0080047791.01.T01

Gene Sequence

>MsG0080047791.01.T01

ATGGGGCAGGAAAGCAAAGAGCCTTGCAAGAAAGAGGCTTGTAACATTCAAGCTTGCCTCTCCAAGAACAACTTTCTCCCGCAAAAGTATGTTTTTGTTTGTTTCGATTTTATTTATTTAATTTCTGTTTGCATATATGTTAATATAATTGGGTTAGAAGATCAATTACCTCTTCATTCCTGGATCTCGTGCTTAAAACTTCTTGAGTGTCCCTTAACTCACCAACCAAGCTATCTTTACAAAACATTGTTGAAACAAAACTGTTGGACTGAGTTGCTGTCTGAAGTTTCTTATAATACTGCTAGGTGCCTTAAAGTTATTGAATTGCTGGACTCTTGCTGCTCAAGATGCGATTATAATTCAACTCACTGTGCTTCGCTCTCTGGACTATTGAAGCAAAATTCCAAGTAA

Protein sequence

>MsG0080047791.01.T01

MGQESKEPCKKEACNIQACLSKNNFLPQKYVFVCFDFIYLISVCIYVNIIGLEDQLPLHSWISCLKLLECPLTHQPSYLYKTLLKQNCWTELLSEVSYNTARCLKVIELLDSCCSRCDYNSTHCASLSGLLKQNSK*