Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006160.01.T01 | XP_013470448.1 | 82.579 | 442 | 6 | 2 | 1 | 371 | 60 | 501 | 0 | 670 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006160.01.T01 | Q9ZT96 | 49.697 | 330 | 137 | 1 | 13 | 313 | 112 | 441 | 1.05E-109 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006160.01.T01 | A0A072VS35 | 82.579 | 442 | 6 | 2 | 1 | 371 | 60 | 501 | 0.0 | 670 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180006160.01.T01 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180006160.01 | MsG0280007066.01 | 0.805579 | 1.247037e-49 | 6.621432e-47 |
| MsG0180006160.01 | MsG0280007955.01 | 0.811907 | 5.535193e-51 | 3.469009e-48 |
| MsG0180006160.01 | MsG0380015555.01 | 0.800567 | 1.356627e-48 | 6.337450e-46 |
| MsG0180006160.01 | MsG0380016163.01 | 0.838876 | 2.216648e-57 | 3.008864e-54 |
| MsG0180006160.01 | MsG0480023488.01 | 0.807748 | 4.344334e-50 | 2.439357e-47 |
| MsG0180006160.01 | MsG0580029236.01 | 0.802079 | 6.651360e-49 | 3.228446e-46 |
| MsG0180006160.01 | MsG0680034739.01 | 0.800064 | 1.717250e-48 | 7.920533e-46 |
| MsG0180006160.01 | MsG0780039170.01 | 0.807600 | 4.670428e-50 | 2.612160e-47 |
| MsG0180006160.01 | MsG0780041662.01 | 0.804374 | 2.227246e-49 | 1.146509e-46 |
| MsG0180006160.01 | MsG0880043937.01 | 0.810280 | 1.246592e-50 | 7.482810e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006160.01.T01 | MTR_1g115415 | 82.579 | 442 | 6 | 2 | 1 | 371 | 60 | 501 | 0.0 | 670 |
| MsG0180006160.01.T01 | MTR_8g105560 | 75.837 | 418 | 21 | 3 | 1 | 369 | 38 | 424 | 0.0 | 596 |
| MsG0180006160.01.T01 | MTR_5g068860 | 49.245 | 331 | 139 | 1 | 12 | 313 | 103 | 433 | 3.33e-106 | 322 |
| MsG0180006160.01.T01 | MTR_2g034600 | 26.543 | 162 | 109 | 2 | 149 | 308 | 208 | 361 | 8.30e-16 | 79.0 |
| MsG0180006160.01.T01 | MTR_2g034600 | 22.456 | 285 | 197 | 7 | 79 | 351 | 210 | 482 | 5.41e-14 | 73.6 |
| MsG0180006160.01.T01 | MTR_2g034600 | 22.881 | 236 | 156 | 5 | 8 | 239 | 189 | 402 | 1.77e-11 | 65.9 |
| MsG0180006160.01.T01 | MTR_4g084630 | 25.463 | 216 | 135 | 3 | 23 | 237 | 45 | 235 | 8.40e-16 | 77.8 |
| MsG0180006160.01.T01 | MTR_2g034600 | 26.543 | 162 | 109 | 2 | 149 | 308 | 273 | 426 | 1.21e-15 | 78.6 |
| MsG0180006160.01.T01 | MTR_2g034600 | 22.456 | 285 | 197 | 7 | 79 | 351 | 275 | 547 | 9.10e-14 | 72.8 |
| MsG0180006160.01.T01 | MTR_2g034600 | 22.881 | 236 | 156 | 5 | 8 | 239 | 254 | 467 | 2.05e-11 | 65.9 |
| MsG0180006160.01.T01 | MTR_2g034600 | 26.543 | 162 | 109 | 2 | 149 | 308 | 269 | 422 | 1.23e-15 | 78.6 |
| MsG0180006160.01.T01 | MTR_2g034600 | 22.456 | 285 | 197 | 7 | 79 | 351 | 271 | 543 | 1.01e-13 | 72.8 |
| MsG0180006160.01.T01 | MTR_2g034600 | 22.881 | 236 | 156 | 5 | 8 | 239 | 250 | 463 | 2.02e-11 | 65.9 |
| MsG0180006160.01.T01 | MTR_4g070060 | 24.138 | 261 | 183 | 6 | 45 | 299 | 235 | 486 | 8.18e-15 | 76.3 |
| MsG0180006160.01.T01 | MTR_4g070060 | 21.622 | 296 | 168 | 7 | 20 | 269 | 328 | 605 | 2.48e-13 | 71.6 |
| MsG0180006160.01.T01 | MTR_6g003960 | 21.961 | 255 | 153 | 4 | 24 | 233 | 283 | 536 | 2.26e-13 | 71.6 |
| MsG0180006160.01.T01 | MTR_6g003960 | 25.466 | 161 | 109 | 2 | 78 | 230 | 417 | 574 | 9.71e-13 | 69.7 |
| MsG0180006160.01.T01 | MTR_5g094610 | 24.107 | 224 | 158 | 5 | 22 | 233 | 194 | 417 | 2.55e-13 | 71.6 |
| MsG0180006160.01.T01 | MTR_5g094610 | 24.793 | 242 | 163 | 9 | 81 | 315 | 192 | 421 | 1.81e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180006160.01.T01 | AT2G44020 | 67.043 | 443 | 74 | 3 | 1 | 371 | 65 | 507 | 0.0 | 566 |
| MsG0180006160.01.T01 | AT4G02990 | 49.697 | 330 | 137 | 1 | 13 | 313 | 112 | 441 | 1.07e-110 | 334 |
| MsG0180006160.01.T01 | AT4G02990 | 49.697 | 330 | 137 | 1 | 13 | 313 | 112 | 441 | 1.07e-110 | 334 |
| MsG0180006160.01.T01 | AT1G78930 | 28.249 | 177 | 124 | 3 | 58 | 233 | 349 | 523 | 1.28e-18 | 87.8 |
| MsG0180006160.01.T01 | AT1G78930 | 22.581 | 248 | 177 | 5 | 48 | 290 | 264 | 501 | 8.08e-11 | 63.9 |
| MsG0180006160.01.T01 | AT2G21710 | 26.222 | 225 | 155 | 4 | 77 | 299 | 278 | 493 | 3.02e-18 | 86.7 |
| MsG0180006160.01.T01 | AT2G21710 | 26.033 | 242 | 165 | 5 | 7 | 237 | 272 | 510 | 5.01e-16 | 80.1 |
| MsG0180006160.01.T01 | AT2G21710 | 26.222 | 225 | 155 | 4 | 77 | 299 | 278 | 493 | 3.31e-18 | 86.7 |
| MsG0180006160.01.T01 | AT2G21710 | 26.033 | 242 | 165 | 5 | 7 | 237 | 272 | 510 | 4.89e-16 | 80.1 |
| MsG0180006160.01.T01 | AT2G21710 | 24.038 | 208 | 142 | 3 | 20 | 222 | 335 | 531 | 4.89e-16 | 80.1 |
| MsG0180006160.01.T01 | AT2G21710 | 26.222 | 225 | 155 | 4 | 77 | 299 | 278 | 493 | 3.38e-18 | 86.7 |
| MsG0180006160.01.T01 | AT2G21710 | 24.038 | 208 | 142 | 3 | 20 | 222 | 335 | 531 | 3.96e-16 | 80.1 |
| MsG0180006160.01.T01 | AT2G21710 | 26.033 | 242 | 165 | 5 | 7 | 237 | 272 | 510 | 4.46e-16 | 80.1 |
| MsG0180006160.01.T01 | AT4G14605 | 24.725 | 182 | 129 | 3 | 52 | 229 | 236 | 413 | 1.79e-15 | 78.2 |
| MsG0180006160.01.T01 | AT4G14605 | 22.613 | 199 | 142 | 4 | 43 | 237 | 263 | 453 | 1.30e-14 | 75.5 |
| MsG0180006160.01.T01 | AT4G14605 | 22.689 | 238 | 171 | 4 | 76 | 311 | 122 | 348 | 2.89e-11 | 65.1 |
| MsG0180006160.01.T01 | AT4G14605 | 24.725 | 182 | 129 | 3 | 52 | 229 | 236 | 413 | 1.79e-15 | 78.2 |
| MsG0180006160.01.T01 | AT4G14605 | 22.613 | 199 | 142 | 4 | 43 | 237 | 263 | 453 | 1.30e-14 | 75.5 |
| MsG0180006160.01.T01 | AT4G14605 | 22.689 | 238 | 171 | 4 | 76 | 311 | 122 | 348 | 2.89e-11 | 65.1 |
| MsG0180006160.01.T01 | AT5G55580 | 25.664 | 226 | 156 | 5 | 20 | 233 | 79 | 304 | 1.11e-14 | 75.1 |
| MsG0180006160.01.T01 | AT5G55580 | 26.455 | 189 | 129 | 4 | 84 | 270 | 117 | 297 | 4.64e-13 | 70.5 |
| MsG0180006160.01.T01 | AT4G38160 | 25.446 | 224 | 152 | 6 | 86 | 305 | 47 | 259 | 1.23e-14 | 74.7 |
| MsG0180006160.01.T01 | AT4G38160 | 24.561 | 228 | 156 | 7 | 65 | 286 | 63 | 280 | 2.34e-13 | 70.9 |
| MsG0180006160.01.T01 | AT4G38160 | 25.446 | 224 | 152 | 6 | 86 | 305 | 47 | 259 | 1.23e-14 | 74.7 |
| MsG0180006160.01.T01 | AT4G38160 | 24.561 | 228 | 156 | 7 | 65 | 286 | 63 | 280 | 2.34e-13 | 70.9 |
| MsG0180006160.01.T01 | AT4G38160 | 25.446 | 224 | 152 | 6 | 86 | 305 | 47 | 259 | 1.90e-14 | 74.3 |
| MsG0180006160.01.T01 | AT4G38160 | 24.561 | 228 | 156 | 7 | 65 | 286 | 63 | 280 | 3.87e-13 | 70.5 |
| MsG0180006160.01.T01 | AT4G38160 | 25.446 | 224 | 152 | 6 | 86 | 305 | 47 | 259 | 1.91e-14 | 74.3 |
| MsG0180006160.01.T01 | AT4G38160 | 24.561 | 228 | 156 | 7 | 65 | 286 | 63 | 280 | 3.97e-13 | 70.5 |
| MsG0180006160.01.T01 | AT5G55580 | 25.664 | 226 | 156 | 5 | 20 | 233 | 185 | 410 | 1.93e-14 | 75.1 |
| MsG0180006160.01.T01 | AT5G55580 | 26.455 | 189 | 129 | 4 | 84 | 270 | 223 | 403 | 1.28e-12 | 69.3 |
| MsG0180006160.01.T01 | AT5G55580 | 26.452 | 155 | 112 | 2 | 84 | 236 | 223 | 377 | 4.96e-12 | 67.4 |
| MsG0180006160.01.T01 | AT5G55580 | 26.425 | 193 | 130 | 5 | 20 | 200 | 185 | 377 | 6.00e-12 | 67.0 |
Find 86 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCAGTATCCTTTGATTT+TGG | 0.075546 | 1:-100823794 | MsG0180006160.01.T01:CDS |
| GTTGAGTTTATTCAGAAATT+AGG | 0.154219 | 1:-100823835 | MsG0180006160.01.T01:CDS |
| GTTGATTACTTGGTTAATTT+AGG | 0.162887 | 1:-100823415 | MsG0180006160.01.T01:CDS |
| TCCTGATGAATTGCAGGATT+TGG | 0.241747 | 1:-100823893 | MsG0180006160.01.T01:CDS |
| AAAGTATAGGTCCTTCATTC+TGG | 0.247502 | 1:-100822783 | MsG0180006160.01.T01:CDS |
| TTGATTACTTGGTTAATTTA+GGG | 0.247846 | 1:-100823414 | MsG0180006160.01.T01:CDS |
| CTTCGATTATCTCAAGGGTT+TGG | 0.298946 | 1:-100823923 | MsG0180006160.01.T01:CDS |
| GTTGATTGTTTGATTAGTTT+TGG | 0.307251 | 1:-100823307 | MsG0180006160.01.T01:CDS |
| TTCGATTATCTCAAGGGTTT+GGG | 0.314201 | 1:-100823922 | MsG0180006160.01.T01:CDS |
| TTGAGTTTATTCAGAAATTA+GGG | 0.329984 | 1:-100823834 | MsG0180006160.01.T01:CDS |
| AGCTTAAACCCTAAAAGTTC+AGG | 0.348375 | 1:+100823568 | None:intergenic |
| ATGTAGAGAAAGATGATATT+GGG | 0.358260 | 1:-100823609 | MsG0180006160.01.T01:CDS |
| AATTATTCCTGATGAATTGC+AGG | 0.358521 | 1:-100823899 | MsG0180006160.01.T01:CDS |
| CCTGTTATTAAGTTTCTTAG+AGG | 0.361016 | 1:-100823637 | MsG0180006160.01.T01:CDS |
| AAAGCCTCTTGTTGATTACT+TGG | 0.364443 | 1:-100823425 | MsG0180006160.01.T01:CDS |
| TCAAAATGTGATTATGAAAC+CGG | 0.364444 | 1:-100823114 | MsG0180006160.01.T01:CDS |
| CTAATCAAACAATCAACATT+AGG | 0.365413 | 1:+100823313 | None:intergenic |
| ATCTGAAACTATATCATTCC+CGG | 0.367449 | 1:+100822738 | None:intergenic |
| CCTCTAAGAAACTTAATAAC+AGG | 0.368936 | 1:+100823637 | None:intergenic |
| GTTGCTTATCTTGTTAGTAT+TGG | 0.373295 | 1:-100823523 | MsG0180006160.01.T01:CDS |
| TTAGTATTGGTGTTAATCCT+AGG | 0.373470 | 1:-100823510 | MsG0180006160.01.T01:CDS |
| GATGTAGAGAAAGATGATAT+TGG | 0.374971 | 1:-100823610 | MsG0180006160.01.T01:CDS |
| GAGATTTGAAGAGAGATTGC+AGG | 0.401297 | 1:-100822824 | MsG0180006160.01.T01:CDS |
| GTCGCAGGATGTGGCTAGTA+TGG | 0.403205 | 1:-100823063 | MsG0180006160.01.T01:CDS |
| TCCTAGGGATATTGGTCCTA+TGG | 0.421118 | 1:-100823494 | MsG0180006160.01.T01:CDS |
| CTCATGACTTCAACGGTTGA+AGG | 0.424949 | 1:+100823865 | None:intergenic |
| GAGAAAAGAGCTTATTTACT+TGG | 0.425844 | 1:-100823361 | MsG0180006160.01.T01:CDS |
| ACCACCCTCGCAAACCCTTC+CGG | 0.428125 | 1:+100823167 | None:intergenic |
| GAATGAAGGACCTATACTTT+CGG | 0.432637 | 1:+100822786 | None:intergenic |
| TATTCAGAAATTAGGGTTAA+CGG | 0.433903 | 1:-100823827 | MsG0180006160.01.T01:CDS |
| GCAATCTCTCTTCAAATCTC+TGG | 0.437449 | 1:+100822827 | None:intergenic |
| TCCGGAAGGGTTTGCGAGGG+TGG | 0.445823 | 1:-100823168 | MsG0180006160.01.T01:CDS |
| GGTGTTAATCCTAGGGATAT+TGG | 0.451217 | 1:-100823502 | MsG0180006160.01.T01:CDS |
| TATAGTTTCAGATGAGGAAG+AGG | 0.454451 | 1:-100822728 | MsG0180006160.01.T01:CDS |
| GGAAGGGTTTGCGAGGGTGG+TGG | 0.459551 | 1:-100823165 | MsG0180006160.01.T01:CDS |
| CGAGATGCCTACTGTTACAT+GGG | 0.462699 | 1:-100823992 | None:intergenic |
| TCCAAATCCTGCAATTCATC+AGG | 0.465291 | 1:+100823892 | None:intergenic |
| GCGAAACGAGTTTCTCTTTG+CGG | 0.473966 | 1:+100823956 | None:intergenic |
| TACTTCTTCAAAAGTGAGAT+GGG | 0.475534 | 1:-100822984 | MsG0180006160.01.T01:CDS |
| ATCCTAGCTAGAATCTTCTT+AGG | 0.491214 | 1:+100823388 | None:intergenic |
| GGGATTTCTAGGTCTAAACT+TGG | 0.492563 | 1:-100823718 | MsG0180006160.01.T01:CDS |
| GTTACATGGGGTGTCATTCA+AGG | 0.496359 | 1:-100823979 | MsG0180006160.01.T01:CDS |
| CATCATCTTCGATTATCTCA+AGG | 0.503798 | 1:-100823929 | MsG0180006160.01.T01:CDS |
| GGCAATACCGTCGCAGGATG+TGG | 0.504137 | 1:-100823072 | MsG0180006160.01.T01:CDS |
| TTTGAAGCTTAAGATTGATC+CGG | 0.506836 | 1:-100823186 | MsG0180006160.01.T01:intron |
| TTACTTCTTCAAAAGTGAGA+TGG | 0.508844 | 1:-100822985 | MsG0180006160.01.T01:CDS |
| GGTCCTTCATTCTGGATTGG+TGG | 0.510705 | 1:-100822775 | MsG0180006160.01.T01:CDS |
| GTCCTTCATTCTGGATTGGT+GGG | 0.516545 | 1:-100822774 | MsG0180006160.01.T01:CDS |
| ATAGGTCCTTCATTCTGGAT+TGG | 0.517859 | 1:-100822778 | MsG0180006160.01.T01:CDS |
| TAGTATTGGTGTTAATCCTA+GGG | 0.522188 | 1:-100823509 | MsG0180006160.01.T01:CDS |
| ACGAGATGCCTACTGTTACA+TGG | 0.523419 | 1:-100823993 | None:intergenic |
| ATCATCTTCGATTATCTCAA+GGG | 0.534022 | 1:-100823928 | MsG0180006160.01.T01:CDS |
| ATTGTTCTGCTAAAGAGAAA+CGG | 0.538058 | 1:+100822675 | None:intergenic |
| TATATCGAAACCGAAAGTAT+AGG | 0.540273 | 1:-100822796 | MsG0180006160.01.T01:CDS |
| GAGGAAGGAATGTTTGCCCT+CGG | 0.544202 | 1:-100823281 | MsG0180006160.01.T01:intron |
| AGCTTAAGATTGATCCGGAA+GGG | 0.556415 | 1:-100823181 | MsG0180006160.01.T01:intron |
| TTCCCACCAATCCAGAATGA+AGG | 0.560953 | 1:+100822772 | None:intergenic |
| AGATTTGAAGAGAGATTGCA+GGG | 0.561148 | 1:-100822823 | MsG0180006160.01.T01:CDS |
| GCAAAGAGAAACTCGTTTCG+CGG | 0.565498 | 1:-100823954 | MsG0180006160.01.T01:CDS |
| CTTCAACCGTTGAAGTCATG+AGG | 0.566630 | 1:-100823864 | MsG0180006160.01.T01:CDS |
| CAAAGAGAAACTCGTTTCGC+GGG | 0.570276 | 1:-100823953 | MsG0180006160.01.T01:CDS |
| GAAGATTCTAGCTAGGATGT+TGG | 0.572863 | 1:-100823383 | MsG0180006160.01.T01:CDS |
| ACACTAGCATGCAAAACTTG+TGG | 0.577739 | 1:+100823676 | None:intergenic |
| TGGTAGGGCAATACCGTCGC+AGG | 0.580954 | 1:-100823078 | MsG0180006160.01.T01:CDS |
| ACGTTCCCTCATGACTTCAA+CGG | 0.586865 | 1:+100823858 | None:intergenic |
| TAAGGATACTGTGTAACCAT+AGG | 0.587849 | 1:+100823478 | None:intergenic |
| GGTGATCAAGTGTCCTCAGT+TGG | 0.594291 | 1:-100823042 | MsG0180006160.01.T01:CDS |
| ACACTACAACCCAAAATCAA+AGG | 0.594517 | 1:+100823784 | None:intergenic |
| TTAACCAAGTAATCAACAAG+AGG | 0.605793 | 1:+100823421 | None:intergenic |
| TCTGAAACTATATCATTCCC+GGG | 0.612098 | 1:+100822739 | None:intergenic |
| TTGATCCGGAAGGGTTTGCG+AGG | 0.614047 | 1:-100823172 | MsG0180006160.01.T01:CDS |
| GTGGGAAATTAGAGCTACCC+GGG | 0.615038 | 1:-100822756 | MsG0180006160.01.T01:CDS |
| ACTCGCAGCGCAACCAACTG+AGG | 0.617167 | 1:+100823029 | None:intergenic |
| GGTGGGAAATTAGAGCTACC+CGG | 0.618425 | 1:-100822757 | MsG0180006160.01.T01:CDS |
| TGCCTAAGAAGATTCTAGCT+AGG | 0.620780 | 1:-100823390 | MsG0180006160.01.T01:CDS |
| AAGCTTAAGATTGATCCGGA+AGG | 0.621599 | 1:-100823182 | MsG0180006160.01.T01:intron |
| GGTGGTGGAGAAGATGCCAC+AGG | 0.628330 | 1:-100823150 | MsG0180006160.01.T01:CDS |
| TTCAACCGTTGAAGTCATGA+GGG | 0.641557 | 1:-100823863 | MsG0180006160.01.T01:CDS |
| ACCATAGGACCAATATCCCT+AGG | 0.641670 | 1:+100823493 | None:intergenic |
| ATGACACCCCATGTAACAGT+AGG | 0.649004 | 1:+100823985 | None:intergenic |
| TGATGAAGACTAACCACCTG+TGG | 0.651476 | 1:+100823134 | None:intergenic |
| TGATCCGGAAGGGTTTGCGA+GGG | 0.652425 | 1:-100823171 | MsG0180006160.01.T01:CDS |
| GAATGATATAGTTTCAGATG+AGG | 0.656227 | 1:-100822734 | MsG0180006160.01.T01:CDS |
| ATACTAGCCACATCCTGCGA+CGG | 0.678965 | 1:+100823065 | None:intergenic |
| GGTGGAGAAGATGCCACAGG+TGG | 0.679410 | 1:-100823147 | MsG0180006160.01.T01:CDS |
| GAGATGCCTACTGTTACATG+GGG | 0.725465 | 1:-100823991 | MsG0180006160.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAGTTTATTCAGAAATTA+GGG | - | Chr1:100822838-100822857 | MsG0180006160.01.T01:intron | 20.0% |
| !! | TTGATTACTTGGTTAATTTA+GGG | - | Chr1:100823258-100823277 | MsG0180006160.01.T01:intron | 20.0% |
| !!! | AAAAATATCCTGAACTTTTA+GGG | - | Chr1:100823096-100823115 | MsG0180006160.01.T01:CDS | 20.0% |
| !!! | TAGGGTATTTAGAAAAAATT+GGG | - | Chr1:100822934-100822953 | MsG0180006160.01.T01:intron | 20.0% |
| !!! | TTAGGGTATTTAGAAAAAAT+TGG | - | Chr1:100822933-100822952 | MsG0180006160.01.T01:intron | 20.0% |
| ! | AGAATACTTCACTTATAGTT+TGG | - | Chr1:100823740-100823759 | MsG0180006160.01.T01:CDS | 25.0% |
| ! | ATGTAGAGAAAGATGATATT+GGG | - | Chr1:100823063-100823082 | MsG0180006160.01.T01:CDS | 25.0% |
| ! | CTAATCAAACAATCAACATT+AGG | + | Chr1:100823362-100823381 | None:intergenic | 25.0% |
| ! | GTTGAGTTTATTCAGAAATT+AGG | - | Chr1:100822837-100822856 | MsG0180006160.01.T01:intron | 25.0% |
| ! | GTTGATTACTTGGTTAATTT+AGG | - | Chr1:100823257-100823276 | MsG0180006160.01.T01:intron | 25.0% |
| ! | TAGAAAAAATTGGGATTTCT+AGG | - | Chr1:100822943-100822962 | MsG0180006160.01.T01:intron | 25.0% |
| ! | TATTCAGAAATTAGGGTTAA+CGG | - | Chr1:100822845-100822864 | MsG0180006160.01.T01:intron | 25.0% |
| ! | TCAAAATGTGATTATGAAAC+CGG | - | Chr1:100823558-100823577 | MsG0180006160.01.T01:CDS | 25.0% |
| !! | AAAAACATGATTCCTGTTTT+AGG | - | Chr1:100822915-100822934 | MsG0180006160.01.T01:intron | 25.0% |
| !! | AAAACATGATTCCTGTTTTA+GGG | - | Chr1:100822916-100822935 | MsG0180006160.01.T01:intron | 25.0% |
| !! | AAACTATAAGTGAAGTATTC+TGG | + | Chr1:100823741-100823760 | None:intergenic | 25.0% |
| !! | CAAAAATATCCTGAACTTTT+AGG | - | Chr1:100823095-100823114 | MsG0180006160.01.T01:CDS | 25.0% |
| !! | TTTTCTAAATACCCTAAAAC+AGG | + | Chr1:100822930-100822949 | None:intergenic | 25.0% |
| !!! | AAATCAGTATCCTTTGATTT+TGG | - | Chr1:100822878-100822897 | MsG0180006160.01.T01:intron | 25.0% |
| !!! | AATCAGTATCCTTTGATTTT+GGG | - | Chr1:100822879-100822898 | MsG0180006160.01.T01:intron | 25.0% |
| !!! | ACACAGTATCCTTATTTTTT+AGG | - | Chr1:100823203-100823222 | MsG0180006160.01.T01:intron | 25.0% |
| !!! | CACAGTATCCTTATTTTTTA+GGG | - | Chr1:100823204-100823223 | MsG0180006160.01.T01:intron | 25.0% |
| !!! | GTTGATTGTTTGATTAGTTT+TGG | - | Chr1:100823365-100823384 | MsG0180006160.01.T01:CDS | 25.0% |
| AATTATTCCTGATGAATTGC+AGG | - | Chr1:100822773-100822792 | MsG0180006160.01.T01:CDS | 30.0% | |
| ACTCTCATCCCTAAAAAATA+AGG | + | Chr1:100823215-100823234 | None:intergenic | 30.0% | |
| ATCATCTTCGATTATCTCAA+GGG | - | Chr1:100822744-100822763 | MsG0180006160.01.T01:CDS | 30.0% | |
| CCTGTTATTAAGTTTCTTAG+AGG | - | Chr1:100823035-100823054 | MsG0180006160.01.T01:CDS | 30.0% | |
| GAATGATATAGTTTCAGATG+AGG | - | Chr1:100823938-100823957 | MsG0180006160.01.T01:CDS | 30.0% | |
| GAGAAAAGAGCTTATTTACT+TGG | - | Chr1:100823311-100823330 | MsG0180006160.01.T01:CDS | 30.0% | |
| GATGTAGAGAAAGATGATAT+TGG | - | Chr1:100823062-100823081 | MsG0180006160.01.T01:CDS | 30.0% | |
| GTTGCTTATCTTGTTAGTAT+TGG | - | Chr1:100823149-100823168 | MsG0180006160.01.T01:CDS | 30.0% | |
| TACTTCTTCAAAAGTGAGAT+GGG | - | Chr1:100823688-100823707 | MsG0180006160.01.T01:CDS | 30.0% | |
| TTAACCAAGTAATCAACAAG+AGG | + | Chr1:100823254-100823273 | None:intergenic | 30.0% | |
| TTACTTCTTCAAAAGTGAGA+TGG | - | Chr1:100823687-100823706 | MsG0180006160.01.T01:CDS | 30.0% | |
| ! | ATCTGAAACTATATCATTCC+CGG | + | Chr1:100823937-100823956 | None:intergenic | 30.0% |
| ! | CCTCTAAGAAACTTAATAAC+AGG | + | Chr1:100823038-100823057 | None:intergenic | 30.0% |
| ! | GGATAAAGTGTTCATTGAAT+TGG | - | Chr1:100823805-100823824 | MsG0180006160.01.T01:CDS | 30.0% |
| ! | TATATCGAAACCGAAAGTAT+AGG | - | Chr1:100823876-100823895 | MsG0180006160.01.T01:CDS | 30.0% |
| ! | TCACTTATAGTTTGGAATCT+AGG | - | Chr1:100823748-100823767 | MsG0180006160.01.T01:CDS | 30.0% |
| ! | TTTGAAGCTTAAGATTGATC+CGG | - | Chr1:100823486-100823505 | MsG0180006160.01.T01:CDS | 30.0% |
| !! | TAGTATTGGTGTTAATCCTA+GGG | - | Chr1:100823163-100823182 | MsG0180006160.01.T01:CDS | 30.0% |
| !! | TTAGTATTGGTGTTAATCCT+AGG | - | Chr1:100823162-100823181 | MsG0180006160.01.T01:CDS | 30.0% |
| !!! | GTTTGATTAGTTTTGGTTTG+AGG | - | Chr1:100823372-100823391 | MsG0180006160.01.T01:CDS | 30.0% |
| !!! | TATTTTTTAGGGATGAGAGT+TGG | - | Chr1:100823215-100823234 | MsG0180006160.01.T01:intron | 30.0% |
| AAAGTATAGGTCCTTCATTC+TGG | - | Chr1:100823889-100823908 | MsG0180006160.01.T01:CDS | 35.0% | |
| ACACTACAACCCAAAATCAA+AGG | + | Chr1:100822891-100822910 | None:intergenic | 35.0% | |
| AGATTTGAAGAGAGATTGCA+GGG | - | Chr1:100823849-100823868 | MsG0180006160.01.T01:CDS | 35.0% | |
| AGCTTAAACCCTAAAAGTTC+AGG | + | Chr1:100823107-100823126 | None:intergenic | 35.0% | |
| ATCCTAGCTAGAATCTTCTT+AGG | + | Chr1:100823287-100823306 | None:intergenic | 35.0% | |
| CATCATCTTCGATTATCTCA+AGG | - | Chr1:100822743-100822762 | MsG0180006160.01.T01:CDS | 35.0% | |
| CTACCAAGTAAAAACTCAAC+CGG | + | Chr1:100823580-100823599 | None:intergenic | 35.0% | |
| GAATGAAGGACCTATACTTT+CGG | + | Chr1:100823889-100823908 | None:intergenic | 35.0% | |
| GATTATTGGATTGCCTCTTA+AGG | - | Chr1:100823433-100823452 | MsG0180006160.01.T01:CDS | 35.0% | |
| TAAGGATACTGTGTAACCAT+AGG | + | Chr1:100823197-100823216 | None:intergenic | 35.0% | |
| TATAGTTTCAGATGAGGAAG+AGG | - | Chr1:100823944-100823963 | MsG0180006160.01.T01:CDS | 35.0% | |
| TTCGATTATCTCAAGGGTTT+GGG | - | Chr1:100822750-100822769 | MsG0180006160.01.T01:CDS | 35.0% | |
| ! | AAACCGGTTGAGTTTTTACT+TGG | - | Chr1:100823574-100823593 | MsG0180006160.01.T01:CDS | 35.0% |
| ! | AAAGCCTCTTGTTGATTACT+TGG | - | Chr1:100823247-100823266 | MsG0180006160.01.T01:intron | 35.0% |
| ! | GGTTGAGTTTTTACTTGGTA+GGG | - | Chr1:100823579-100823598 | MsG0180006160.01.T01:CDS | 35.0% |
| ! | TCTGAAACTATATCATTCCC+GGG | + | Chr1:100823936-100823955 | None:intergenic | 35.0% |
| !!! | CTTTTAGGGTTTAAGCTTGA+AGG | - | Chr1:100823110-100823129 | MsG0180006160.01.T01:CDS | 35.0% |
| !!! | GATTAGTTTTGGTTTGAGGA+AGG | - | Chr1:100823376-100823395 | MsG0180006160.01.T01:CDS | 35.0% |
| AAGCTTAAGATTGATCCGGA+AGG | - | Chr1:100823490-100823509 | MsG0180006160.01.T01:CDS | 40.0% | |
| ACACTAGCATGCAAAACTTG+TGG | + | Chr1:100822999-100823018 | None:intergenic | 40.0% | |
| AGAGGCAATCCAATAATCTG+CGG | + | Chr1:100823431-100823450 | None:intergenic | 40.0% | |
| AGCTTAAGATTGATCCGGAA+GGG | - | Chr1:100823491-100823510 | MsG0180006160.01.T01:CDS | 40.0% | |
| ATAGGTCCTTCATTCTGGAT+TGG | - | Chr1:100823894-100823913 | MsG0180006160.01.T01:CDS | 40.0% | |
| CTTCGATTATCTCAAGGGTT+TGG | - | Chr1:100822749-100822768 | MsG0180006160.01.T01:CDS | 40.0% | |
| GAAGACAATTTCGCCTTAAG+AGG | + | Chr1:100823449-100823468 | None:intergenic | 40.0% | |
| GAGATTTGAAGAGAGATTGC+AGG | - | Chr1:100823848-100823867 | MsG0180006160.01.T01:CDS | 40.0% | |
| GCAATCTCTCTTCAAATCTC+TGG | + | Chr1:100823848-100823867 | None:intergenic | 40.0% | |
| GGATTAAACCTAGATACCAG+AGG | - | Chr1:100823769-100823788 | MsG0180006160.01.T01:CDS | 40.0% | |
| GGTGTTAATCCTAGGGATAT+TGG | - | Chr1:100823170-100823189 | MsG0180006160.01.T01:CDS | 40.0% | |
| TCCAAATCCTGCAATTCATC+AGG | + | Chr1:100822783-100822802 | None:intergenic | 40.0% | |
| TCCTGATGAATTGCAGGATT+TGG | - | Chr1:100822779-100822798 | MsG0180006160.01.T01:CDS | 40.0% | |
| TTCAACCGTTGAAGTCATGA+GGG | - | Chr1:100822809-100822828 | MsG0180006160.01.T01:CDS | 40.0% | |
| ! | AACTCCACAAGCTCTTTTAC+AGG | + | Chr1:100823717-100823736 | None:intergenic | 40.0% |
| ! | CGGTTGAGTTTTTACTTGGT+AGG | - | Chr1:100823578-100823597 | MsG0180006160.01.T01:CDS | 40.0% |
| ! | GAAGATTCTAGCTAGGATGT+TGG | - | Chr1:100823289-100823308 | MsG0180006160.01.T01:CDS | 40.0% |
| ! | GGGATTTCTAGGTCTAAACT+TGG | - | Chr1:100822954-100822973 | MsG0180006160.01.T01:intron | 40.0% |
| ! | TGCCTAAGAAGATTCTAGCT+AGG | - | Chr1:100823282-100823301 | MsG0180006160.01.T01:CDS | 40.0% |
| ACCATAGGACCAATATCCCT+AGG | + | Chr1:100823182-100823201 | None:intergenic | 45.0% | |
| ACGTTCCCTCATGACTTCAA+CGG | + | Chr1:100822817-100822836 | None:intergenic | 45.0% | |
| ATACCAGAGGCTTAAGAGCA+AGG | - | Chr1:100823782-100823801 | MsG0180006160.01.T01:CDS | 45.0% | |
| ATGACACCCCATGTAACAGT+AGG | + | Chr1:100822690-100822709 | None:intergenic | 45.0% | |
| CAAAGAGAAACTCGTTTCGC+GGG | - | Chr1:100822719-100822738 | MsG0180006160.01.T01:CDS | 45.0% | |
| CTCATGACTTCAACGGTTGA+AGG | + | Chr1:100822810-100822829 | None:intergenic | 45.0% | |
| CTCTTAAGCCTCTGGTATCT+AGG | + | Chr1:100823780-100823799 | None:intergenic | 45.0% | |
| CTTCAACCGTTGAAGTCATG+AGG | - | Chr1:100822808-100822827 | MsG0180006160.01.T01:CDS | 45.0% | |
| GAGACCTGTAAAAGAGCTTG+TGG | - | Chr1:100823710-100823729 | MsG0180006160.01.T01:CDS | 45.0% | |
| GCAAAGAGAAACTCGTTTCG+CGG | - | Chr1:100822718-100822737 | MsG0180006160.01.T01:CDS | 45.0% | |
| GCGAAACGAGTTTCTCTTTG+CGG | + | Chr1:100822719-100822738 | None:intergenic | 45.0% | |
| GCTCAGTATCCGCAGATTAT+TGG | - | Chr1:100823419-100823438 | MsG0180006160.01.T01:CDS | 45.0% | |
| GGATACTGAGCAATAACCGA+GGG | + | Chr1:100823410-100823429 | None:intergenic | 45.0% | |
| TACCAGAGGCTTAAGAGCAA+GGG | - | Chr1:100823783-100823802 | MsG0180006160.01.T01:CDS | 45.0% | |
| TCCTAGGGATATTGGTCCTA+TGG | - | Chr1:100823178-100823197 | MsG0180006160.01.T01:intron | 45.0% | |
| TGATGAAGACTAACCACCTG+TGG | + | Chr1:100823541-100823560 | None:intergenic | 45.0% | |
| TTCCCACCAATCCAGAATGA+AGG | + | Chr1:100823903-100823922 | None:intergenic | 45.0% | |
| !! | GTCCTTCATTCTGGATTGGT+GGG | - | Chr1:100823898-100823917 | MsG0180006160.01.T01:CDS | 45.0% |
| !! | GTTACATGGGGTGTCATTCA+AGG | - | Chr1:100822693-100822712 | MsG0180006160.01.T01:CDS | 45.0% |
| ACCAGAGGCTTAAGAGCAAG+GGG | - | Chr1:100823784-100823803 | MsG0180006160.01.T01:CDS | 50.0% | |
| ATACTAGCCACATCCTGCGA+CGG | + | Chr1:100823610-100823629 | None:intergenic | 50.0% | |
| CGGATACTGAGCAATAACCG+AGG | + | Chr1:100823411-100823430 | None:intergenic | 50.0% | |
| GAGGAAGGAATGTTTGCCCT+CGG | - | Chr1:100823391-100823410 | MsG0180006160.01.T01:CDS | 50.0% | |
| GGTGATCAAGTGTCCTCAGT+TGG | - | Chr1:100823630-100823649 | MsG0180006160.01.T01:CDS | 50.0% | |
| GGTGGGAAATTAGAGCTACC+CGG | - | Chr1:100823915-100823934 | MsG0180006160.01.T01:CDS | 50.0% | |
| GTGGGAAATTAGAGCTACCC+GGG | - | Chr1:100823916-100823935 | MsG0180006160.01.T01:CDS | 50.0% | |
| ! | GGTCCTTCATTCTGGATTGG+TGG | - | Chr1:100823897-100823916 | MsG0180006160.01.T01:CDS | 50.0% |
| GTCGCAGGATGTGGCTAGTA+TGG | - | Chr1:100823609-100823628 | MsG0180006160.01.T01:CDS | 55.0% | |
| TCCCCTTGCTCTTAAGCCTC+TGG | + | Chr1:100823788-100823807 | None:intergenic | 55.0% | |
| TGATCCGGAAGGGTTTGCGA+GGG | - | Chr1:100823501-100823520 | MsG0180006160.01.T01:CDS | 55.0% | |
| TTGATCCGGAAGGGTTTGCG+AGG | - | Chr1:100823500-100823519 | MsG0180006160.01.T01:CDS | 55.0% | |
| ACCACCCTCGCAAACCCTTC+CGG | + | Chr1:100823508-100823527 | None:intergenic | 60.0% | |
| ACTCGCAGCGCAACCAACTG+AGG | + | Chr1:100823646-100823665 | None:intergenic | 60.0% | |
| GGCAATACCGTCGCAGGATG+TGG | - | Chr1:100823600-100823619 | MsG0180006160.01.T01:CDS | 60.0% | |
| GGTGGAGAAGATGCCACAGG+TGG | - | Chr1:100823525-100823544 | MsG0180006160.01.T01:CDS | 60.0% | |
| TGGTAGGGCAATACCGTCGC+AGG | - | Chr1:100823594-100823613 | MsG0180006160.01.T01:CDS | 60.0% | |
| !! | GGTGGTGGAGAAGATGCCAC+AGG | - | Chr1:100823522-100823541 | MsG0180006160.01.T01:CDS | 60.0% |
| GGAAGGGTTTGCGAGGGTGG+TGG | - | Chr1:100823507-100823526 | MsG0180006160.01.T01:CDS | 65.0% | |
| TCCGGAAGGGTTTGCGAGGG+TGG | - | Chr1:100823504-100823523 | MsG0180006160.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 100822684 | 100824010 | 100822684 | ID=MsG0180006160.01;Name=MsG0180006160.01 |
| Chr1 | mRNA | 100822684 | 100824010 | 100822684 | ID=MsG0180006160.01.T01;Parent=MsG0180006160.01;Name=MsG0180006160.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0.5|0|3|0|371 |
| Chr1 | exon | 100823282 | 100824010 | 100823282 | ID=MsG0180006160.01.T01:exon:14891;Parent=MsG0180006160.01.T01 |
| Chr1 | exon | 100822978 | 100823195 | 100822978 | ID=MsG0180006160.01.T01:exon:14890;Parent=MsG0180006160.01.T01 |
| Chr1 | exon | 100822684 | 100822852 | 100822684 | ID=MsG0180006160.01.T01:exon:14889;Parent=MsG0180006160.01.T01 |
| Chr1 | CDS | 100823282 | 100824010 | 100823282 | ID=MsG0180006160.01.T01:cds;Parent=MsG0180006160.01.T01 |
| Chr1 | CDS | 100822978 | 100823195 | 100822978 | ID=MsG0180006160.01.T01:cds;Parent=MsG0180006160.01.T01 |
| Chr1 | CDS | 100822684 | 100822852 | 100822684 | ID=MsG0180006160.01.T01:cds;Parent=MsG0180006160.01.T01 |
| Gene Sequence |
| Protein sequence |
