AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023488.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023488.01.T01 MTR_8g094180 70.507 217 2 2 15 169 15 231 1.03e-96 284
MsG0480023488.01.T01 MTR_8g094180 70.507 217 2 2 15 169 15 231 1.39e-96 285
MsG0480023488.01.T01 MTR_2g024120 34.711 242 78 4 1 170 6 239 6.50e-39 137
MsG0480023488.01.T01 MTR_1g016880 32.597 181 58 5 55 173 106 284 9.54e-21 88.6
MsG0480023488.01.T01 MTR_5g055480 32.184 174 56 3 55 166 122 295 2.69e-19 84.3
MsG0480023488.01.T01 MTR_6g083830 33.333 183 57 5 53 172 147 327 4.93e-19 84.0
MsG0480023488.01.T01 MTR_2g037600 31.609 174 58 3 54 166 104 277 1.85e-18 82.0
MsG0480023488.01.T01 MTR_1g110290 30.460 174 59 2 55 166 124 297 5.98e-18 80.9
MsG0480023488.01.T01 MTR_2g037620 32.184 174 58 4 53 166 95 268 1.07e-17 80.1
MsG0480023488.01.T01 MTR_5g006930 30.682 176 59 2 53 165 114 289 1.62e-17 79.3
MsG0480023488.01.T01 MTR_3g108740 30.114 176 63 3 51 166 88 263 2.13e-17 79.0
MsG0480023488.01.T01 MTR_4g127550 30.460 174 61 3 53 166 105 278 2.52e-17 79.0
MsG0480023488.01.T01 MTR_1g009960 30.114 176 63 3 51 166 107 282 4.50e-17 78.2
MsG0480023488.01.T01 MTR_1g009960 30.114 176 63 3 51 166 107 282 5.01e-17 78.2
MsG0480023488.01.T01 MTR_8g015500 29.714 175 61 3 53 165 141 315 1.47e-16 77.0
MsG0480023488.01.T01 MTR_3g104840 31.844 179 73 5 40 172 127 302 4.68e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023488.01.T01 AT5G14550 45.417 240 54 6 1 166 1 237 3.23e-60 191
MsG0480023488.01.T01 AT5G14550 45.417 240 54 6 1 166 1 237 1.68e-59 190
MsG0480023488.01.T01 AT5G14550 45.417 240 54 6 1 166 1 237 1.71e-59 190
MsG0480023488.01.T01 AT5G14550 43.192 213 44 6 1 139 1 210 1.48e-44 150
MsG0480023488.01.T01 AT1G62305 48.026 152 39 2 54 166 67 217 3.89e-37 132
MsG0480023488.01.T01 AT1G11940 35.983 239 80 4 2 170 16 251 1.69e-36 128
MsG0480023488.01.T01 AT1G11940 35.983 239 80 4 2 170 16 251 7.35e-36 129
MsG0480023488.01.T01 AT1G62305 41.714 175 40 3 54 166 67 241 9.70e-33 119
MsG0480023488.01.T01 AT1G62305 41.714 175 40 3 54 166 67 241 1.34e-32 120
MsG0480023488.01.T01 AT1G51770 34.416 154 64 2 55 173 123 274 2.12e-22 93.2
MsG0480023488.01.T01 AT1G73810 33.908 174 51 3 56 165 147 320 1.41e-20 88.2
MsG0480023488.01.T01 AT1G51770 32.597 181 58 4 55 173 123 301 1.64e-20 88.2
MsG0480023488.01.T01 AT1G10880 30.387 181 62 4 55 173 117 295 3.27e-20 87.0
MsG0480023488.01.T01 AT4G31350 30.508 177 63 3 50 166 83 259 8.77e-19 83.2
MsG0480023488.01.T01 AT4G31350 30.508 177 63 3 50 166 83 259 8.77e-19 83.2
MsG0480023488.01.T01 AT4G31350 30.508 177 63 3 50 166 83 259 8.77e-19 83.2
MsG0480023488.01.T01 AT5G16170 31.667 180 59 4 56 173 136 313 1.16e-18 82.8
MsG0480023488.01.T01 AT1G68390 28.571 175 63 2 53 165 135 309 3.64e-18 81.6
MsG0480023488.01.T01 AT5G57270 30.286 175 62 3 52 166 94 268 5.76e-18 80.9
MsG0480023488.01.T01 AT5G57270 30.286 175 62 3 52 166 94 268 5.76e-18 80.9
MsG0480023488.01.T01 AT5G57270 30.286 175 62 3 52 166 94 268 5.76e-18 80.9
MsG0480023488.01.T01 AT5G57270 30.286 175 62 3 52 166 94 268 5.76e-18 80.9
MsG0480023488.01.T01 AT5G57270 30.286 175 62 3 52 166 94 268 5.76e-18 80.9
MsG0480023488.01.T01 AT1G68380 31.868 182 64 3 55 176 123 304 5.47e-17 78.2
MsG0480023488.01.T01 AT4G31350 30.814 172 64 3 50 166 83 254 7.56e-17 77.4
MsG0480023488.01.T01 AT5G11730 28.729 181 65 4 55 173 117 295 1.14e-16 77.0
MsG0480023488.01.T01 AT2G19160 31.214 173 59 3 53 165 103 275 1.73e-16 76.6
MsG0480023488.01.T01 AT2G19160 31.214 173 59 3 53 165 103 275 1.73e-16 76.6
MsG0480023488.01.T01 AT1G10280 29.310 174 61 3 55 166 142 315 2.28e-16 76.3
MsG0480023488.01.T01 AT3G21310 28.729 181 65 3 55 173 114 292 9.18e-16 74.7
MsG0480023488.01.T01 AT3G21310 28.729 181 65 3 55 173 114 292 9.18e-16 74.7
MsG0480023488.01.T01 AT4G25870 28.161 174 65 3 52 165 95 268 1.43e-14 71.2
MsG0480023488.01.T01 AT4G30060 28.902 173 63 3 53 165 106 278 3.26e-14 70.1
MsG0480023488.01.T01 AT4G30060 28.902 173 63 3 53 165 106 278 3.26e-14 70.1
MsG0480023488.01.T01 AT5G25970 29.282 181 64 5 55 173 118 296 5.62e-14 69.3
MsG0480023488.01.T01 AT5G25970 29.282 181 64 5 55 173 118 296 5.62e-14 69.3
MsG0480023488.01.T01 AT5G25970 29.282 181 64 5 55 173 118 296 5.62e-14 69.3

Find 46 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGCGGTATACTCATGTTT+TGG 0.236011 4:+85895623 MsG0480023488.01.T01:CDS
TGGTTTGGGATGCATTCTTT+AGG 0.289253 4:+85895739 MsG0480023488.01.T01:CDS
CAGTTATTCCAGTTTATAAC+TGG 0.289938 4:+85898759 MsG0480023488.01.T01:CDS
TTCTTGCTAAATTCTTTATT+AGG 0.305249 4:+85895351 MsG0480023488.01.T01:five_prime_UTR
GCTTCCTTTGGAATTGGTTT+GGG 0.305701 4:+85895725 MsG0480023488.01.T01:CDS
GGTTTGGGATGCATTCTTTA+GGG 0.307058 4:+85895740 MsG0480023488.01.T01:CDS
TTGGTGGTGGTGCTTTGTTT+TGG 0.307690 4:+85895582 MsG0480023488.01.T01:CDS
TAAATTCTTTATTAGGCTAT+TGG 0.309438 4:+85895358 MsG0480023488.01.T01:five_prime_UTR
TTGAAATGAGTGTTAAAGTT+TGG 0.313532 4:+85895426 MsG0480023488.01.T01:five_prime_UTR
GGCTTCCTTTGGAATTGGTT+TGG 0.319839 4:+85895724 MsG0480023488.01.T01:CDS
TACAACCTTGGCATGCTTCC+TGG 0.336465 4:-85898929 None:intergenic
CTTATATTATGTGTCTCAAT+TGG 0.341081 4:+85899010 MsG0480023488.01.T01:CDS
AGAAAGTGGTTCAGCAGAAA+TGG 0.341229 4:+85895535 MsG0480023488.01.T01:CDS
CAGTTATAAACTGGAATAAC+TGG 0.344271 4:-85898758 None:intergenic
ATGAAGAGAAAAGCAATCTT+AGG 0.355547 4:-85895690 None:intergenic
TGCAAGGAATAGGCTTCCTT+TGG 0.360242 4:+85895713 MsG0480023488.01.T01:CDS
GAATAGGCTTCCTTTGGAAT+TGG 0.368624 4:+85895719 MsG0480023488.01.T01:CDS
ATTAGGCTATTGGTTTGGTA+TGG 0.398215 4:+85895368 MsG0480023488.01.T01:five_prime_UTR
TTCTCTTCATTGCAAGGAAT+AGG 0.401929 4:+85895703 MsG0480023488.01.T01:CDS
TGCAGTGGGCTGTGCTGACC+AGG 0.406399 4:+85898911 MsG0480023488.01.T01:intron
AAAACAAAGCGGTCATTTAG+AGG 0.415697 4:-85897814 None:intergenic
CCAGTTTATAACTGGAGAAA+AGG 0.418484 4:+85898767 MsG0480023488.01.T01:CDS
TTGGTTTGGTATGGATCTGT+TGG 0.428962 4:+85895377 MsG0480023488.01.T01:five_prime_UTR
CTATCCACAAAGCAATATAA+AGG 0.433889 4:-85895315 None:intergenic
TCTTTATTAGGCTATTGGTT+TGG 0.435068 4:+85895363 MsG0480023488.01.T01:five_prime_UTR
TAACTGGAGAAAAGGATCTC+AGG 0.503043 4:+85898775 MsG0480023488.01.T01:CDS
TACAGCTTCGCTGACACAAA+AGG 0.505137 4:+85898710 MsG0480023488.01.T01:intron
ATCGTCCTCCACTACAACCT+TGG 0.509580 4:-85898941 None:intergenic
GTAGAATATGAAGAAGAAAG+TGG 0.518812 4:+85895521 MsG0480023488.01.T01:exon
TTGAATTGATTTGAAATGGT+GGG 0.531524 4:+85895472 MsG0480023488.01.T01:five_prime_UTR
GGGTGAAGCAAGCATGATAG+AGG 0.536814 4:+85897756 MsG0480023488.01.T01:CDS
TCAGCAGAAATGGAAGAAGA+AGG 0.538184 4:+85895545 MsG0480023488.01.T01:CDS
TTGAGACACATAATATAAGA+AGG 0.541670 4:-85899006 None:intergenic
TTTGAATTGATTTGAAATGG+TGG 0.548180 4:+85895471 MsG0480023488.01.T01:five_prime_UTR
GAAGCATGCCAAGGTTGTAG+TGG 0.562145 4:+85898933 MsG0480023488.01.T01:CDS
ATTGATTTGAAATGGTGGGT+TGG 0.566299 4:+85895476 MsG0480023488.01.T01:five_prime_UTR
ATGTCTAAGTAAAATTCGCT+CGG 0.583854 4:-85897779 None:intergenic
GTTTGTTGTTTATGCAGATG+CGG 0.596175 4:+85895607 MsG0480023488.01.T01:CDS
GCATGCCAAGGTTGTAGTGG+AGG 0.609985 4:+85898936 MsG0480023488.01.T01:CDS
TTGGATCTTCTACTTCTGAG+TGG 0.624570 4:+85895396 MsG0480023488.01.T01:five_prime_UTR
GCATCCCAAACCAATTCCAA+AGG 0.633005 4:-85895729 None:intergenic
AGACACATAATATAAGAAGG+AGG 0.662841 4:-85899003 None:intergenic
TATACCCTCACCTATCTGAG+AGG 0.685286 4:-85897837 None:intergenic
AGCTTCGCTGACACAAAAGG+AGG 0.705360 4:+85898713 MsG0480023488.01.T01:intron
GCTGACCAGGAAGCATGCCA+AGG 0.707493 4:+85898924 MsG0480023488.01.T01:CDS
TATCTGAGAGGAAAACAAAG+CGG 0.756541 4:-85897825 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAATAATTAACTACAA+AGG - Chr4:85898651-85898670 None:intergenic 15.0%
!! ATTTAACAAAACTAATTGTT+GGG - Chr4:85898579-85898598 None:intergenic 15.0%
!! TATATAATGATTGAAGTTTA+TGG - Chr4:85897876-85897895 None:intergenic 15.0%
!! TATTTAACAAAACTAATTGT+TGG - Chr4:85898580-85898599 None:intergenic 15.0%
!!! TAATAGTAGTTTTTACTTTT+TGG + Chr4:85896299-85896318 MsG0480023488.01.T01:intron 15.0%
!!! TTGAAATAATCTCATTTTAT+CGG + Chr4:85897576-85897595 MsG0480023488.01.T01:intron 15.0%
!!! TTTTGTTTCTATTTGTTTTT+TGG + Chr4:85895790-85895809 MsG0480023488.01.T01:intron 15.0%
!! AACTATATAGAGAAACTATT+AGG + Chr4:85897030-85897049 MsG0480023488.01.T01:intron 20.0%
!! AACTATTTGGTAGAATATTA+TGG + Chr4:85897090-85897109 MsG0480023488.01.T01:intron 20.0%
!! AGAAGAATTCATAAAAAGAT+AGG - Chr4:85898892-85898911 None:intergenic 20.0%
!! AGATTAATGTCGTATATATA+TGG - Chr4:85898472-85898491 None:intergenic 20.0%
!! ATAAAAAGATAGGTATAAGA+TGG - Chr4:85898882-85898901 None:intergenic 20.0%
!! ATGTTAACTAAATATCATGA+AGG - Chr4:85897715-85897734 None:intergenic 20.0%
!! GATAGAAATAAGAAACTATT+TGG + Chr4:85897077-85897096 MsG0480023488.01.T01:intron 20.0%
!! GGTTTCAAAAAAATTTAGTT+TGG - Chr4:85898064-85898083 None:intergenic 20.0%
!! TAAATTCTTTATTAGGCTAT+TGG + Chr4:85895358-85895377 MsG0480023488.01.T01:five_prime_UTR 20.0%
!! TTATGTGTTTATTTATCACA+TGG + Chr4:85897499-85897518 MsG0480023488.01.T01:intron 20.0%
!! TTCTTGCTAAATTCTTTATT+AGG + Chr4:85895351-85895370 MsG0480023488.01.T01:five_prime_UTR 20.0%
!! TTGTTTATGGTAAGATAATA+TGG + Chr4:85896250-85896269 MsG0480023488.01.T01:intron 20.0%
!!! AAATGAAATTTGTTAGTAGA+AGG + Chr4:85896049-85896068 MsG0480023488.01.T01:intron 20.0%
!!! AATGTTTCAAAAATTTTGCA+AGG + Chr4:85898975-85898994 MsG0480023488.01.T01:CDS 20.0%
!!! TTCTTTTGATGTTTTAAACA+TGG - Chr4:85897644-85897663 None:intergenic 20.0%
!!! TTGCAAAATTTTTGAAACAT+TGG - Chr4:85898976-85898995 None:intergenic 20.0%
!!! TTTCTCTATATAGTTTTTCT+AGG - Chr4:85897025-85897044 None:intergenic 20.0%
!!! TTTGACTTTATTTGATCTTT+TGG + Chr4:85897353-85897372 MsG0480023488.01.T01:intron 20.0%
! AAAAAAGCTGATAACAACTT+AGG - Chr4:85897278-85897297 None:intergenic 25.0%
! AAAAAGCTGATAACAACTTA+GGG - Chr4:85897277-85897296 None:intergenic 25.0%
! AAATCATTATTCCAAAGAAG+AGG - Chr4:85896516-85896535 None:intergenic 25.0%
! AACATATGGTCAATAAGTTA+TGG - Chr4:85896599-85896618 None:intergenic 25.0%
! AAGCTCTTCTGTATAATTTA+TGG + Chr4:85897302-85897321 MsG0480023488.01.T01:intron 25.0%
! AAGTCAAACTTCTTTCATAT+AGG - Chr4:85897341-85897360 None:intergenic 25.0%
! ACTGAATTGTTCATAAAGTT+TGG + Chr4:85897952-85897971 MsG0480023488.01.T01:intron 25.0%
! ACTTTATGAACAATTCAGTT+CGG - Chr4:85897951-85897970 None:intergenic 25.0%
! ATCTGGAAAAAGAAACATAT+AGG - Chr4:85895928-85895947 None:intergenic 25.0%
! ATTAATCTGTTTATCCAAAC+AGG + Chr4:85897408-85897427 MsG0480023488.01.T01:intron 25.0%
! CAATCAACTGAAATATAGTA+AGG - Chr4:85898311-85898330 None:intergenic 25.0%
! CTAACATTTGCCTATAAAAA+AGG - Chr4:85896010-85896029 None:intergenic 25.0%
! CTTATATTATGTGTCTCAAT+TGG + Chr4:85899010-85899029 MsG0480023488.01.T01:CDS 25.0%
! GACATAACTGTGTATTTAAA+AGG - Chr4:85896374-85896393 None:intergenic 25.0%
! TAGAATATCATTGCTCTATT+TGG - Chr4:85895025-85895044 None:intergenic 25.0%
! TCCACAATAATTTAGCTAAA+GGG - Chr4:85896631-85896650 None:intergenic 25.0%
! TGAAACAAAACTGATAACTA+GGG + Chr4:85898183-85898202 MsG0480023488.01.T01:intron 25.0%
! TTAATCTGTTTATCCAAACA+GGG + Chr4:85897409-85897428 MsG0480023488.01.T01:intron 25.0%
! TTCCACAATAATTTAGCTAA+AGG - Chr4:85896632-85896651 None:intergenic 25.0%
! TTGAAATGAGTGTTAAAGTT+TGG + Chr4:85895426-85895445 MsG0480023488.01.T01:five_prime_UTR 25.0%
! TTGAGACACATAATATAAGA+AGG - Chr4:85899009-85899028 None:intergenic 25.0%
!! AACAGTTCTAATATTCGATT+TGG - Chr4:85898134-85898153 None:intergenic 25.0%
!! AACATTTGTATTGCATTTTC+AGG + Chr4:85896771-85896790 MsG0480023488.01.T01:intron 25.0%
!! ACATTTGTATTGCATTTTCA+GGG + Chr4:85896772-85896791 MsG0480023488.01.T01:intron 25.0%
!! TTTTAGATTCAAAAGGGTTA+GGG + Chr4:85895499-85895518 MsG0480023488.01.T01:five_prime_UTR 25.0%
!! TTTTCCTTTATATTGCTTTG+TGG + Chr4:85895311-85895330 MsG0480023488.01.T01:five_prime_UTR 25.0%
!! TTTTTATAGGCAAATGTTAG+TGG + Chr4:85896010-85896029 MsG0480023488.01.T01:intron 25.0%
!!! ACTTTTCCTTTGAAAATTGA+TGG - Chr4:85895078-85895097 None:intergenic 25.0%
!!! GCTTTTGAATTGATTTGAAA+TGG + Chr4:85895468-85895487 MsG0480023488.01.T01:five_prime_UTR 25.0%
!!! GTTAGTGGTTGTTTTATTAA+GGG + Chr4:85896025-85896044 MsG0480023488.01.T01:intron 25.0%
!!! GTTGATGTTACCTTTTTTAT+AGG + Chr4:85895997-85896016 MsG0480023488.01.T01:intron 25.0%
!!! TAGTTATCAGTTTTGTTTCA+CGG - Chr4:85898183-85898202 None:intergenic 25.0%
!!! TCACAAAAGTTGTTGATTTT+TGG - Chr4:85895052-85895071 None:intergenic 25.0%
!!! TGTTAGTGGTTGTTTTATTA+AGG + Chr4:85896024-85896043 MsG0480023488.01.T01:intron 25.0%
!!! TTAGTGGTTGTTTTATTAAG+GGG + Chr4:85896026-85896045 MsG0480023488.01.T01:intron 25.0%
!!! TTCTAATATTCGATTTGGTT+TGG - Chr4:85898129-85898148 None:intergenic 25.0%
!!! TTGAATTGATTTGAAATGGT+GGG + Chr4:85895472-85895491 MsG0480023488.01.T01:five_prime_UTR 25.0%
!!! TTTGAATTGATTTGAAATGG+TGG + Chr4:85895471-85895490 MsG0480023488.01.T01:five_prime_UTR 25.0%
AAACCAAATGATTCTTTGTG+AGG + Chr4:85898079-85898098 MsG0480023488.01.T01:intron 30.0%
AAATACACAGTTATGTCCTT+TGG + Chr4:85896377-85896396 MsG0480023488.01.T01:intron 30.0%
AATAAGCTGTTATAGTTGAC+TGG + Chr4:85896988-85897007 MsG0480023488.01.T01:intron 30.0%
AATACACAGTTATGTCCTTT+GGG + Chr4:85896378-85896397 MsG0480023488.01.T01:intron 30.0%
ACTTTCTCTCTCTATTACTT+TGG - Chr4:85895118-85895137 None:intergenic 30.0%
AGACACATAATATAAGAAGG+AGG - Chr4:85899006-85899025 None:intergenic 30.0%
AGACTATAGAACTTCATAGT+TGG - Chr4:85897474-85897493 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG + Chr4:85897055-85897074 MsG0480023488.01.T01:intron 30.0%
AGGAAAAGTAGATAGTAACA+CGG + Chr4:85895089-85895108 MsG0480023488.01.T01:intron 30.0%
ATAAGCTGTTATAGTTGACT+GGG + Chr4:85896989-85897008 MsG0480023488.01.T01:intron 30.0%
ATGAAGAGAAAAGCAATCTT+AGG - Chr4:85895693-85895712 None:intergenic 30.0%
ATGTCTAAGTAAAATTCGCT+CGG - Chr4:85897782-85897801 None:intergenic 30.0%
ATTTCATAGAATGCTAGTTG+TGG + Chr4:85896719-85896738 MsG0480023488.01.T01:intron 30.0%
CAGTTATAAACTGGAATAAC+TGG - Chr4:85898761-85898780 None:intergenic 30.0%
CAGTTATTCCAGTTTATAAC+TGG + Chr4:85898759-85898778 MsG0480023488.01.T01:CDS 30.0%
CATAAGATAGTAAATGGACA+TGG - Chr4:85896958-85896977 None:intergenic 30.0%
CCAACACATAAGATAGTAAA+TGG - Chr4:85896964-85896983 None:intergenic 30.0%
CCACAATAATTTAGCTAAAG+GGG - Chr4:85896630-85896649 None:intergenic 30.0%
CCATACGTTGCTTAATTATA+TGG + Chr4:85898240-85898259 MsG0480023488.01.T01:intron 30.0%
CCATATAATTAAGCAACGTA+TGG - Chr4:85898243-85898262 None:intergenic 30.0%
CCATTTACTATCTTATGTGT+TGG + Chr4:85896961-85896980 MsG0480023488.01.T01:intron 30.0%
CTATCCACAAAGCAATATAA+AGG - Chr4:85895318-85895337 None:intergenic 30.0%
GATTGAGTATTTAAGTGACT+TGG + Chr4:85896428-85896447 MsG0480023488.01.T01:intron 30.0%
GTAGAATATGAAGAAGAAAG+TGG + Chr4:85895521-85895540 MsG0480023488.01.T01:exon 30.0%
GTGAAACAAAACTGATAACT+AGG + Chr4:85898182-85898201 MsG0480023488.01.T01:intron 30.0%
TAATCTGTTTATCCAAACAG+GGG + Chr4:85897410-85897429 MsG0480023488.01.T01:intron 30.0%
TAATGTTACATTCCTTTCCT+TGG + Chr4:85897435-85897454 MsG0480023488.01.T01:intron 30.0%
TCAAGTTAATGATAGCATAC+AGG + Chr4:85896885-85896904 MsG0480023488.01.T01:intron 30.0%
TTAAAAGCTAGCTATCAAGA+GGG - Chr4:85896459-85896478 None:intergenic 30.0%
TTTATGAATTCTTCTGCAGT+GGG + Chr4:85898897-85898916 MsG0480023488.01.T01:intron 30.0%
! ATCTTTTTGCAGATAGATTG+GGG + Chr4:85897736-85897755 MsG0480023488.01.T01:intron 30.0%
! GATCTTTTTGCAGATAGATT+GGG + Chr4:85897735-85897754 MsG0480023488.01.T01:intron 30.0%
! TCAAATAAGTCGATTCAAAC+AGG - Chr4:85897186-85897205 None:intergenic 30.0%
! TCTTTATTAGGCTATTGGTT+TGG + Chr4:85895363-85895382 MsG0480023488.01.T01:five_prime_UTR 30.0%
! TGACAACCATCAATTTTCAA+AGG + Chr4:85895069-85895088 MsG0480023488.01.T01:intron 30.0%
! TGATCTTTTTGCAGATAGAT+TGG + Chr4:85897734-85897753 MsG0480023488.01.T01:intron 30.0%
! TTTTATGAATTCTTCTGCAG+TGG + Chr4:85898896-85898915 MsG0480023488.01.T01:intron 30.0%
!! GAAGGTTTTTGCTTTGATTT+TGG + Chr4:85895563-85895582 MsG0480023488.01.T01:CDS 30.0%
!! GTGAAAGTGTTGCTATTATT+TGG - Chr4:85895219-85895238 None:intergenic 30.0%
!! GTTTTAGATTCAAAAGGGTT+AGG + Chr4:85895498-85895517 MsG0480023488.01.T01:five_prime_UTR 30.0%
!!! GGTTGGTTTTAGATTCAAAA+GGG + Chr4:85895493-85895512 MsG0480023488.01.T01:five_prime_UTR 30.0%
!!! TTTTACTTTTTGGAGAGCTT+AGG + Chr4:85896309-85896328 MsG0480023488.01.T01:intron 30.0%
AAAACAAAGCGGTCATTTAG+AGG - Chr4:85897817-85897836 None:intergenic 35.0%
AAATGTTGTTATGACAAGCG+AGG - Chr4:85896556-85896575 None:intergenic 35.0%
AAGTACTCTCCACTTACTAT+AGG + Chr4:85897895-85897914 MsG0480023488.01.T01:intron 35.0%
AATATTACGAACGAGGATCT+AGG - Chr4:85896082-85896101 None:intergenic 35.0%
ACTTACTATAGGACTCTTCA+TGG + Chr4:85897906-85897925 MsG0480023488.01.T01:intron 35.0%
AGGTCGTTACAATCCAAAAA+TGG + Chr4:85898733-85898752 MsG0480023488.01.T01:CDS 35.0%
AGTCCTCACAAAGAATCATT+TGG - Chr4:85898085-85898104 None:intergenic 35.0%
AGTGTAGGGACAATTGTTTA+TGG + Chr4:85896237-85896256 MsG0480023488.01.T01:intron 35.0%
ATACACAGTTATGTCCTTTG+GGG + Chr4:85896379-85896398 MsG0480023488.01.T01:intron 35.0%
ATACTTGTCATCCTCTTCTT+TGG + Chr4:85896502-85896521 MsG0480023488.01.T01:intron 35.0%
ATCAACACATCCTCAAAGAA+GGG - Chr4:85896115-85896134 None:intergenic 35.0%
ATGAAGAGTCCTATAGTAAG+TGG - Chr4:85897907-85897926 None:intergenic 35.0%
CCAGTTTATAACTGGAGAAA+AGG + Chr4:85898767-85898786 MsG0480023488.01.T01:CDS 35.0%
CCCCTTTAGCTAAATTATTG+TGG + Chr4:85896627-85896646 MsG0480023488.01.T01:intron 35.0%
CTTAAAAGCTAGCTATCAAG+AGG - Chr4:85896460-85896479 None:intergenic 35.0%
GAAAAAGCAAAAAACTGAGC+TGG + Chr4:85898156-85898175 MsG0480023488.01.T01:intron 35.0%
GAGAGATAAAGTTGTCACAT+AGG + Chr4:85895157-85895176 MsG0480023488.01.T01:intron 35.0%
GAGATTGAATGAGAGAACTT+AGG + Chr4:85897232-85897251 MsG0480023488.01.T01:intron 35.0%
GTGTAGCTGAAGTTGTATAA+AGG - Chr4:85898354-85898373 None:intergenic 35.0%
TATCTGAGAGGAAAACAAAG+CGG - Chr4:85897828-85897847 None:intergenic 35.0%
TCACATAGGTTGTCACAAAA+TGG + Chr4:85895171-85895190 MsG0480023488.01.T01:intron 35.0%
TGTAACATTAAACCCCTGTT+TGG - Chr4:85897425-85897444 None:intergenic 35.0%
TTCAATCTCACAAGCGTTTA+TGG - Chr4:85897221-85897240 None:intergenic 35.0%
TTCTCTTCATTGCAAGGAAT+AGG + Chr4:85895703-85895722 MsG0480023488.01.T01:CDS 35.0%
! ATCATTGATTAGTGCAGTGT+AGG + Chr4:85896222-85896241 MsG0480023488.01.T01:intron 35.0%
! ATGACAAGTATCAAAGCACT+TGG - Chr4:85896493-85896512 None:intergenic 35.0%
! ATGCGGTATACTCATGTTTT+GGG + Chr4:85895624-85895643 MsG0480023488.01.T01:CDS 35.0%
! CCTTTTCTCCAGTTATAAAC+TGG - Chr4:85898770-85898789 None:intergenic 35.0%
! GGAATAACTGGATCCATTTT+TGG - Chr4:85898749-85898768 None:intergenic 35.0%
! GTGTGTACTTGGTGATTAAT+AGG + Chr4:85895833-85895852 MsG0480023488.01.T01:intron 35.0%
! GTTGTTGTTGTAGTTGACTT+AGG + Chr4:85897160-85897179 MsG0480023488.01.T01:intron 35.0%
! TCATTGATTAGTGCAGTGTA+GGG + Chr4:85896223-85896242 MsG0480023488.01.T01:intron 35.0%
! TCTCAATTTTCGTTCATCCT+AGG + Chr4:85896809-85896828 MsG0480023488.01.T01:intron 35.0%
! TGACAAGTATCAAAGCACTT+GGG - Chr4:85896492-85896511 None:intergenic 35.0%
! TGTACTTGGTGATTAATAGG+AGG + Chr4:85895836-85895855 MsG0480023488.01.T01:intron 35.0%
!! AGTGTTACAAGTTCTGAATC+TGG - Chr4:85895945-85895964 None:intergenic 35.0%
!! ATTAGGCTATTGGTTTGGTA+TGG + Chr4:85895368-85895387 MsG0480023488.01.T01:five_prime_UTR 35.0%
!! ATTGATTTGAAATGGTGGGT+TGG + Chr4:85895476-85895495 MsG0480023488.01.T01:five_prime_UTR 35.0%
!! GGTTTTTGCTTTGATTTTGG+TGG + Chr4:85895566-85895585 MsG0480023488.01.T01:CDS 35.0%
!! GTTTGTTGTTTATGCAGATG+CGG + Chr4:85895607-85895626 MsG0480023488.01.T01:CDS 35.0%
!! TTGCTTTTCTCTTCATTGCA+AGG + Chr4:85895697-85895716 MsG0480023488.01.T01:CDS 35.0%
!! TTTGTATTGCATTTTCAGGG+AGG + Chr4:85896775-85896794 MsG0480023488.01.T01:intron 35.0%
!! TTTTGCTTTGATTTTGGTGG+TGG + Chr4:85895569-85895588 MsG0480023488.01.T01:CDS 35.0%
!!! GATAGCTAGCTTTTAAGAGA+GGG + Chr4:85896463-85896482 MsG0480023488.01.T01:intron 35.0%
!!! GGGTTGGTTTTAGATTCAAA+AGG + Chr4:85895492-85895511 MsG0480023488.01.T01:five_prime_UTR 35.0%
!!! TGATAGCTAGCTTTTAAGAG+AGG + Chr4:85896462-85896481 MsG0480023488.01.T01:intron 35.0%
AAGGGGAGTCTCTTAACATA+TGG - Chr4:85896613-85896632 None:intergenic 40.0%
AGAAAGTGGTTCAGCAGAAA+TGG + Chr4:85895535-85895554 MsG0480023488.01.T01:CDS 40.0%
CACCTATCGACAAAACTAGT+TGG - Chr4:85898399-85898418 None:intergenic 40.0%
CATCAACACATCCTCAAAGA+AGG - Chr4:85896116-85896135 None:intergenic 40.0%
CTAGAGGAATATTACGAACG+AGG - Chr4:85896089-85896108 None:intergenic 40.0%
GAAATGTTGAGGTGCAGTAA+TGG + Chr4:85896741-85896760 MsG0480023488.01.T01:intron 40.0%
GTCTATGGAGTTCTATCAGA+AGG + Chr4:85896337-85896356 MsG0480023488.01.T01:intron 40.0%
GTTTCAAACAACGAGAGAAG+AGG - Chr4:85896913-85896932 None:intergenic 40.0%
TAACTGGAGAAAAGGATCTC+AGG + Chr4:85898775-85898794 MsG0480023488.01.T01:CDS 40.0%
TATGTGTGTGTGTGTGTACT+TGG + Chr4:85895822-85895841 MsG0480023488.01.T01:intron 40.0%
TCAGCAGAAATGGAAGAAGA+AGG + Chr4:85895545-85895564 MsG0480023488.01.T01:CDS 40.0%
TGATTCTTTGTGAGGACTGT+TGG + Chr4:85898087-85898106 MsG0480023488.01.T01:intron 40.0%
TGCTAGTTGTGGAAATGTTG+AGG + Chr4:85896730-85896749 MsG0480023488.01.T01:intron 40.0%
TGTTATAGTTGACTGGGTAG+AGG + Chr4:85896995-85897014 MsG0480023488.01.T01:intron 40.0%
TTGGATCTTCTACTTCTGAG+TGG + Chr4:85895396-85895415 MsG0480023488.01.T01:five_prime_UTR 40.0%
TTGGTACGAAACCACATAAC+CGG - Chr4:85898045-85898064 None:intergenic 40.0%
! AAGCTTTATCCCACTAAGTG+GGG - Chr4:85897139-85897158 None:intergenic 40.0%
! CAAGCTTTATCCCACTAAGT+GGG - Chr4:85897140-85897159 None:intergenic 40.0%
! GATGCGGTATACTCATGTTT+TGG + Chr4:85895623-85895642 MsG0480023488.01.T01:CDS 40.0%
! GGTTTGGGATGCATTCTTTA+GGG + Chr4:85895740-85895759 MsG0480023488.01.T01:CDS 40.0%
! TGCGGTATACTCATGTTTTG+GGG + Chr4:85895625-85895644 MsG0480023488.01.T01:CDS 40.0%
! TGGTTTGGGATGCATTCTTT+AGG + Chr4:85895739-85895758 MsG0480023488.01.T01:CDS 40.0%
! TTTTCCTCTCAGATAGGTGA+GGG + Chr4:85897833-85897852 MsG0480023488.01.T01:intron 40.0%
!! AGATTCTAGTTCATCCCCAA+AGG - Chr4:85896396-85896415 None:intergenic 40.0%
!! GAATAGGCTTCCTTTGGAAT+TGG + Chr4:85895719-85895738 MsG0480023488.01.T01:CDS 40.0%
!! GCTTCCTTTGGAATTGGTTT+GGG + Chr4:85895725-85895744 MsG0480023488.01.T01:CDS 40.0%
!! TTGGTTTGGTATGGATCTGT+TGG + Chr4:85895377-85895396 MsG0480023488.01.T01:five_prime_UTR 40.0%
!!! CACCAACTAGTTTTGTCGAT+AGG + Chr4:85898394-85898413 MsG0480023488.01.T01:intron 40.0%
!!! GCTTTGTTTTCCTCTCAGAT+AGG + Chr4:85897827-85897846 MsG0480023488.01.T01:CDS 40.0%
ACCTACACATCAGCTTGGTT+CGG - Chr4:85898014-85898033 None:intergenic 45.0%
ACTGAACCTACACATCAGCT+TGG - Chr4:85898019-85898038 None:intergenic 45.0%
AGAGCTTAGGTGTGTGTCTA+TGG + Chr4:85896322-85896341 MsG0480023488.01.T01:intron 45.0%
CCACTTAGTGGGATAAAGCT+TGG + Chr4:85897138-85897157 MsG0480023488.01.T01:intron 45.0%
CTTCATGGTTTCGTTCAGGA+AGG + Chr4:85897921-85897940 MsG0480023488.01.T01:intron 45.0%
GACTCTTCATGGTTTCGTTC+AGG + Chr4:85897917-85897936 MsG0480023488.01.T01:intron 45.0%
GATGTGTAGGTTCAGTGTAC+CGG + Chr4:85898023-85898042 MsG0480023488.01.T01:intron 45.0%
GCACACTTCAATCCAAGGAA+AGG - Chr4:85897450-85897469 None:intergenic 45.0%
GCATCCCAAACCAATTCCAA+AGG - Chr4:85895732-85895751 None:intergenic 45.0%
GCATTGTCGAGAATAGTGAG+TGG + Chr4:85896146-85896165 MsG0480023488.01.T01:intron 45.0%
GGGGCAAACTATTAGTGGTT+TGG - Chr4:85897988-85898007 None:intergenic 45.0%
GGTAACATCAACGCACTACT+AGG - Chr4:85895989-85896008 None:intergenic 45.0%
TACAGCTTCGCTGACACAAA+AGG + Chr4:85898710-85898729 MsG0480023488.01.T01:intron 45.0%
TATACCCTCACCTATCTGAG+AGG - Chr4:85897840-85897859 None:intergenic 45.0%
TGCAAGGAATAGGCTTCCTT+TGG + Chr4:85895713-85895732 MsG0480023488.01.T01:CDS 45.0%
TTGGAGCACACTTCAATCCA+AGG - Chr4:85897455-85897474 None:intergenic 45.0%
TTTATCCCACTAAGTGGGGT+CGG - Chr4:85897135-85897154 None:intergenic 45.0%
! ATTTTCGTTCATCCTAGGCC+AGG + Chr4:85896814-85896833 MsG0480023488.01.T01:intron 45.0%
! CCAAGCTTTATCCCACTAAG+TGG - Chr4:85897141-85897160 None:intergenic 45.0%
! GAAATGTGCTAGAGAGCGTA+AGG - Chr4:85898440-85898459 None:intergenic 45.0%
! GTTTTCCTCTCAGATAGGTG+AGG + Chr4:85897832-85897851 MsG0480023488.01.T01:intron 45.0%
! TTTTCGTTCATCCTAGGCCA+GGG + Chr4:85896815-85896834 MsG0480023488.01.T01:intron 45.0%
!! GGCTTCCTTTGGAATTGGTT+TGG + Chr4:85895724-85895743 MsG0480023488.01.T01:CDS 45.0%
!!! TGGTGGTGGTGCTTTGTTTT+GGG + Chr4:85895583-85895602 MsG0480023488.01.T01:CDS 45.0%
!!! TTGGTGGTGGTGCTTTGTTT+TGG + Chr4:85895582-85895601 MsG0480023488.01.T01:CDS 45.0%
ACCGAACCAAGCTGATGTGT+AGG + Chr4:85898010-85898029 MsG0480023488.01.T01:intron 50.0%
AGCTTCGCTGACACAAAAGG+AGG + Chr4:85898713-85898732 MsG0480023488.01.T01:intron 50.0%
ATCGTCCTCCACTACAACCT+TGG - Chr4:85898944-85898963 None:intergenic 50.0%
CCTCAAAGAAGGGATGCTAG+AGG - Chr4:85896105-85896124 None:intergenic 50.0%
CCTCTAGCATCCCTTCTTTG+AGG + Chr4:85896102-85896121 MsG0480023488.01.T01:intron 50.0%
GAAGCATGCCAAGGTTGTAG+TGG + Chr4:85898933-85898952 MsG0480023488.01.T01:CDS 50.0%
GCCAGGGTTTGTGTTGAATG+AGG + Chr4:85896831-85896850 MsG0480023488.01.T01:intron 50.0%
GCCTCATTCAACACAAACCC+TGG - Chr4:85896835-85896854 None:intergenic 50.0%
GGGTGAAGCAAGCATGATAG+AGG + Chr4:85897756-85897775 MsG0480023488.01.T01:CDS 50.0%
GGTTCGGGGCAAACTATTAG+TGG - Chr4:85897993-85898012 None:intergenic 50.0%
TACAACCTTGGCATGCTTCC+TGG - Chr4:85898932-85898951 None:intergenic 50.0%
TTCAACACAAACCCTGGCCT+AGG - Chr4:85896829-85896848 None:intergenic 50.0%
!! ACATCAGCTTGGTTCGGTTC+GGG - Chr4:85898008-85898027 None:intergenic 50.0%
!! CACATCAGCTTGGTTCGGTT+CGG - Chr4:85898009-85898028 None:intergenic 50.0%
!! GGTTCAGTGTACCGGTTATG+TGG + Chr4:85898031-85898050 MsG0480023488.01.T01:intron 50.0%
ACTAAGTGGGGTCGGCTACA+TGG - Chr4:85897127-85897146 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + Chr4:85897126-85897145 MsG0480023488.01.T01:intron 55.0%
GCATGCCAAGGTTGTAGTGG+AGG + Chr4:85898936-85898955 MsG0480023488.01.T01:CDS 55.0%
TGTAGCCGACCCCACTTAGT+GGG + Chr4:85897127-85897146 MsG0480023488.01.T01:intron 55.0%
!! CATCAGCTTGGTTCGGTTCG+GGG - Chr4:85898007-85898026 None:intergenic 55.0%
! GCTGACCAGGAAGCATGCCA+AGG + Chr4:85898924-85898943 MsG0480023488.01.T01:CDS 60.0%
!! TGCAGTGGGCTGTGCTGACC+AGG + Chr4:85898911-85898930 MsG0480023488.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 85895010 85899062 85895010 ID=MsG0480023488.01;Name=MsG0480023488.01
Chr4 mRNA 85895010 85899062 85895010 ID=MsG0480023488.01.T01;Parent=MsG0480023488.01;Name=MsG0480023488.01.T01;_AED=0.47;_eAED=0.47;_QI=324|0.5|0.8|1|0.75|0.6|5|0|187
Chr4 exon 85895010 85895025 85895010 ID=MsG0480023488.01.T01:exon:6354;Parent=MsG0480023488.01.T01
Chr4 exon 85895220 85895761 85895220 ID=MsG0480023488.01.T01:exon:6355;Parent=MsG0480023488.01.T01
Chr4 exon 85897748 85897848 85897748 ID=MsG0480023488.01.T01:exon:6356;Parent=MsG0480023488.01.T01
Chr4 exon 85898715 85898796 85898715 ID=MsG0480023488.01.T01:exon:6357;Parent=MsG0480023488.01.T01
Chr4 exon 85898916 85899062 85898916 ID=MsG0480023488.01.T01:exon:6358;Parent=MsG0480023488.01.T01
Chr4 five_prime_UTR 85895010 85895025 85895010 ID=MsG0480023488.01.T01:five_prime_utr;Parent=MsG0480023488.01.T01
Chr4 five_prime_UTR 85895220 85895527 85895220 ID=MsG0480023488.01.T01:five_prime_utr;Parent=MsG0480023488.01.T01
Chr4 CDS 85895528 85895761 85895528 ID=MsG0480023488.01.T01:cds;Parent=MsG0480023488.01.T01
Chr4 CDS 85897748 85897848 85897748 ID=MsG0480023488.01.T01:cds;Parent=MsG0480023488.01.T01
Chr4 CDS 85898715 85898796 85898715 ID=MsG0480023488.01.T01:cds;Parent=MsG0480023488.01.T01
Chr4 CDS 85898916 85899062 85898916 ID=MsG0480023488.01.T01:cds;Parent=MsG0480023488.01.T01
Gene Sequence

>MsG0480023488.01.T01

ATGAAGAAGAAAGTGGTTCAGCAGAAATGGAAGAAGAAGGTTTTTGCTTTGATTTTGGTGGTGGTGCTTTGTTTTGGGAGTTTGTTGTTTATGCAGATGCGGTATACTCATGTTTTGGGGCTTGTTTCATTGCAACATCAACTTGTTTCTCAAGTTCAGAAGCCTAAGATTGCTTTTCTCTTCATTGCAAGGAATAGGCTTCCTTTGGAATTGGTTTGGGATGCATTCTTTAGGATAGATTGGGGTGAAGCAAGCATGATAGAGGCCGAGCGAATTTTACTTAGACATGCTCTTGATGATCCTCTAAATGACCGCTTTGTTTTCCTCTCAGATAGCTTCGCTGACACAAAAGGAGGTCGTTACAATCCAAAAATGGATCCAGTTATTCCAGTTTATAACTGGAGAAAAGGATCTCAGTGGGCTGTGCTGACCAGGAAGCATGCCAAGGTTGTAGTGGAGGACGATACTGTCTTTCCAATGTTTCAAAAATTTTGCAAGGTACTTCCTCCTTCTTATATTATGTGTCTCAATTGGAACATGCACATATCTTACGAAAATGATTAA

Protein sequence

>MsG0480023488.01.T01

MKKKVVQQKWKKKVFALILVVVLCFGSLLFMQMRYTHVLGLVSLQHQLVSQVQKPKIAFLFIARNRLPLELVWDAFFRIDWGEASMIEAERILLRHALDDPLNDRFVFLSDSFADTKGGRYNPKMDPVIPVYNWRKGSQWAVLTRKHAKVVVEDDTVFPMFQKFCKVLPPSYIMCLNWNMHISYEND*